Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68929.t1 | XP_013450931.1 | 93.7 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 7.40E-146 | 526.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68929.t1 | Q6K550 | 82.0 | 283 | 51 | 0 | 1 | 283 | 1 | 283 | 3.4e-131 | 469.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68929.t1 | A0A072U6I0 | 93.7 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 5.4e-146 | 526.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68929 | MS.gene066087 | PPI |
| MS.gene68929 | MS.gene51044 | PPI |
| MS.gene68929 | MS.gene51046 | PPI |
| MS.gene066091 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene51051 | PPI |
| MS.gene68929 | MS.gene066097 | PPI |
| MS.gene68929 | MS.gene055768 | PPI |
| MS.gene68929 | MS.gene066086 | PPI |
| MS.gene033161 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene43265 | PPI |
| MS.gene68929 | MS.gene066085 | PPI |
| MS.gene43264 | MS.gene68929 | PPI |
| MS.gene033158 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene029948 | PPI |
| MS.gene68929 | MS.gene43234 | PPI |
| MS.gene68929 | MS.gene028857 | PPI |
| MS.gene68929 | MS.gene59292 | PPI |
| MS.gene68929 | MS.gene066093 | PPI |
| MS.gene31416 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene066088 | PPI |
| MS.gene043467 | MS.gene68929 | PPI |
| MS.gene51045 | MS.gene68929 | PPI |
| MS.gene51054 | MS.gene68929 | PPI |
| MS.gene033163 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene033162 | PPI |
| MS.gene51047 | MS.gene68929 | PPI |
| MS.gene68929 | MS.gene033164 | PPI |
| MS.gene058043 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68929.t1 | MTR_6g011380 | 93.706 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 0.0 | 557 |
| MS.gene68929.t1 | MTR_8g469160 | 78.873 | 284 | 60 | 0 | 1 | 284 | 1 | 284 | 5.40e-173 | 479 |
| MS.gene68929.t1 | MTR_4g107810 | 80.702 | 285 | 55 | 0 | 1 | 285 | 1 | 285 | 7.22e-167 | 464 |
| MS.gene68929.t1 | MTR_4g107760 | 80.702 | 285 | 55 | 0 | 1 | 285 | 1 | 285 | 7.22e-167 | 464 |
| MS.gene68929.t1 | MTR_4g107810 | 80.702 | 285 | 55 | 0 | 1 | 285 | 61 | 345 | 2.67e-165 | 462 |
| MS.gene68929.t1 | MTR_4g107830 | 75.084 | 297 | 59 | 1 | 1 | 282 | 1 | 297 | 1.27e-163 | 456 |
| MS.gene68929.t1 | MTR_4g107720 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 1.01e-162 | 453 |
| MS.gene68929.t1 | MTR_4g107730 | 73.944 | 284 | 68 | 2 | 1 | 282 | 1 | 280 | 4.59e-148 | 416 |
| MS.gene68929.t1 | MTR_6g460470 | 57.092 | 282 | 121 | 0 | 5 | 286 | 7 | 288 | 1.74e-113 | 329 |
| MS.gene68929.t1 | MTR_4g107700 | 83.951 | 81 | 13 | 0 | 202 | 282 | 6 | 86 | 3.67e-43 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68929.t1 | AT5G62740 | 82.867 | 286 | 49 | 0 | 1 | 286 | 1 | 286 | 4.61e-179 | 495 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT1G69840 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 1.02e-173 | 481 |
| MS.gene68929.t1 | AT3G01290 | 71.579 | 285 | 81 | 0 | 1 | 285 | 1 | 285 | 1.53e-156 | 438 |
| MS.gene68929.t1 | AT5G51570 | 57.143 | 280 | 118 | 1 | 6 | 285 | 10 | 287 | 1.55e-118 | 342 |
Find 62 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACCATGAAGGAAAT+TGG | 0.266220 | 6.2:+21384816 | MS.gene68929:CDS |
| ACCGAGTCCTGATAGATATT+TGG | 0.278834 | 6.2:-21384673 | None:intergenic |
| GGATGCACCAATTTCCTTCA+TGG | 0.336344 | 6.2:-21384823 | None:intergenic |
| CGCATTCAATGTCAAGTTGC+TGG | 0.344461 | 6.2:-21383293 | None:intergenic |
| TTGGAAAATGGGGCAAGCTT+TGG | 0.344643 | 6.2:+21383134 | None:intergenic |
| TGGAAAATGGGGCAAGCTTT+GGG | 0.358890 | 6.2:+21383135 | None:intergenic |
| GCGTTCTCCGAGAATGTACC+TGG | 0.378150 | 6.2:+21384747 | MS.gene68929:CDS |
| GCTGAGTCCAAATATCTATC+AGG | 0.383086 | 6.2:+21384666 | MS.gene68929:CDS |
| CACATGGTCCAGGTGCTGTT+AGG | 0.383951 | 6.2:+21384871 | MS.gene68929:CDS |
| CATTGTTTGCCTTGGTGTCT+AGG | 0.391009 | 6.2:+21383237 | MS.gene68929:CDS |
| GCGACAACCAACCAGCTATC+TGG | 0.414487 | 6.2:-21383263 | None:intergenic |
| CTGGATGCCATTGTTTGCCT+TGG | 0.421129 | 6.2:+21383229 | MS.gene68929:CDS |
| ATTAGAGATGGTCTTCTTCA+AGG | 0.428122 | 6.2:+21384909 | MS.gene68929:CDS |
| CAATATCAACAATGAGAGTC+TGG | 0.437796 | 6.2:-21384059 | None:intergenic |
| ACATGGTCCAGGTGCTGTTA+GGG | 0.460398 | 6.2:+21384872 | MS.gene68929:CDS |
| GCTCTCTTAACTTTAACATC+AGG | 0.465195 | 6.2:-21384084 | None:intergenic |
| ACAGCATCCAGTTCCAACTT+TGG | 0.465414 | 6.2:-21383838 | None:intergenic |
| AACAGCTGCGAGAATGAGAT+TGG | 0.474379 | 6.2:+21384584 | MS.gene68929:intron |
| GAACACAGATGAACACTTTG+AGG | 0.475166 | 6.2:-21384844 | None:intergenic |
| AAGGGCCAGTGTGCCAAAGT+TGG | 0.480570 | 6.2:+21383825 | MS.gene68929:CDS |
| GGATAATGTCTTTGTGAATG+TGG | 0.494005 | 6.2:+21383417 | MS.gene68929:intron |
| GTTGCTATCAAAGAACACTT+TGG | 0.494815 | 6.2:+21383183 | MS.gene68929:CDS |
| TGTCTAGGTTACCAGATAGC+TGG | 0.505139 | 6.2:+21383252 | MS.gene68929:CDS |
| GTGAGCCTATAAAATGCATC+AGG | 0.510751 | 6.2:-21383478 | None:intergenic |
| CAACATTGGACTGTAATACT+TGG | 0.511250 | 6.2:-21383164 | None:intergenic |
| CAGTGTGCCAAAGTTGGAAC+TGG | 0.511810 | 6.2:+21383831 | MS.gene68929:CDS |
| TGTTGTCCCAGGTACATTCT+CGG | 0.512908 | 6.2:-21384754 | None:intergenic |
| TTGGATCTGTTCCCTTGTGT+TGG | 0.521954 | 6.2:-21383500 | None:intergenic |
| GTGTTCTTTGATAGCAACAT+TGG | 0.527774 | 6.2:-21383178 | None:intergenic |
| CAAGGCAAACAATGGCATCC+AGG | 0.531320 | 6.2:-21383228 | None:intergenic |
| AAGCCATTGTGGAAGGAATG+AGG | 0.536337 | 6.2:+21384712 | MS.gene68929:CDS |
| ACATCTTTAGCTGTTGTCCC+AGG | 0.540151 | 6.2:-21384765 | None:intergenic |
| CAGTTCCAACTTTGGCACAC+TGG | 0.540727 | 6.2:-21383830 | None:intergenic |
| TCCAAATATCTATCAGGACT+CGG | 0.541016 | 6.2:+21384672 | MS.gene68929:CDS |
| GCTATGAACGAGATCAATGC+AGG | 0.548484 | 6.2:+21384105 | MS.gene68929:CDS |
| GTGTTCATACCACATGGTCC+AGG | 0.549237 | 6.2:+21384861 | MS.gene68929:CDS |
| ACAATACTTTGACACCATGA+AGG | 0.552560 | 6.2:+21384809 | MS.gene68929:CDS |
| GCAATGTCCCTAACAGCACC+TGG | 0.563513 | 6.2:-21384879 | None:intergenic |
| CTGCAGATCAAGAAAGCTGA+GGG | 0.568434 | 6.2:+21384639 | MS.gene68929:CDS |
| GACAACAGCTAAAGATGTCA+TGG | 0.586366 | 6.2:+21384770 | MS.gene68929:CDS |
| GTCCCTCATTCCTTCCACAA+TGG | 0.590245 | 6.2:-21384715 | None:intergenic |
| TTTATAGGCTCACCAACACA+AGG | 0.592761 | 6.2:+21383488 | MS.gene68929:CDS |
| AGATGTCATGGACATGGTGT+TGG | 0.601697 | 6.2:+21384782 | MS.gene68929:CDS |
| TATTGAAGAGGAGCTTGAGA+AGG | 0.601952 | 6.2:+21383891 | MS.gene68929:CDS |
| CAACGTCAAGCCATTGTGGA+AGG | 0.602968 | 6.2:+21384705 | MS.gene68929:CDS |
| TAGGTTACCAGATAGCTGGT+TGG | 0.610782 | 6.2:+21383256 | MS.gene68929:CDS |
| AGCCATTGTGGAAGGAATGA+GGG | 0.615154 | 6.2:+21384713 | MS.gene68929:CDS |
| CATAGCAAAGGCTATTGAAG+AGG | 0.621293 | 6.2:+21383879 | MS.gene68929:CDS |
| TCATCTGTGTTCATACCACA+TGG | 0.624805 | 6.2:+21384855 | MS.gene68929:CDS |
| CTAGACACCAAGGCAAACAA+TGG | 0.625157 | 6.2:-21383236 | None:intergenic |
| ATTGCAGTGCAGATTAGAGA+TGG | 0.626434 | 6.2:+21384897 | MS.gene68929:CDS |
| GAGATTGGCTACGAACGAGA+AGG | 0.633667 | 6.2:+21384599 | MS.gene68929:CDS |
| GCAGAAGAATGACATAGCAA+AGG | 0.640484 | 6.2:+21383867 | MS.gene68929:CDS |
| AGCTAAAGATGTCATGGACA+TGG | 0.640832 | 6.2:+21384776 | MS.gene68929:CDS |
| ACGACAACGTCAAGCCATTG+TGG | 0.655201 | 6.2:+21384701 | MS.gene68929:CDS |
| ACTGCAGATCAAGAAAGCTG+AGG | 0.659916 | 6.2:+21384638 | MS.gene68929:CDS |
| ATCTGGTAACCTAGACACCA+AGG | 0.681433 | 6.2:-21383246 | None:intergenic |
| CTAACAGCACCTGGACCATG+TGG | 0.686861 | 6.2:-21384870 | None:intergenic |
| CGTTCTCCGAGAATGTACCT+GGG | 0.693439 | 6.2:+21384748 | MS.gene68929:CDS |
| GTCTGTACAATACCGCGTTG+TGG | 0.711465 | 6.2:+21383444 | MS.gene68929:CDS |
| TTATAGGCTCACCAACACAA+GGG | 0.716086 | 6.2:+21383489 | MS.gene68929:CDS |
| GCGCTTTCTCAGCCACAACG+CGG | 0.750700 | 6.2:-21383456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATAAAATGTTTCTT+CGG | + | chr6.2:21383944-21383963 | MS.gene68929:intron | 10.0% |
| !!! | ATTTTTATTTTCAGTTTTAA+GGG | + | chr6.2:21383807-21383826 | MS.gene68929:intron | 10.0% |
| !! | TTAAATTATATGAAATGTCA+TGG | + | chr6.2:21383587-21383606 | MS.gene68929:intron | 15.0% |
| !!! | CATTTTTATTTTCAGTTTTA+AGG | + | chr6.2:21383806-21383825 | MS.gene68929:intron | 15.0% |
| !! | AACAACTAGATTATCAATTA+TGG | - | chr6.2:21383761-21383780 | None:intergenic | 20.0% |
| !! | TTTGTTCCAATATATTTGTT+TGG | - | chr6.2:21384464-21384483 | None:intergenic | 20.0% |
| !!! | AATGCTAAGAAAAATGTTTT+TGG | - | chr6.2:21384152-21384171 | None:intergenic | 20.0% |
| !!! | GGTGTTTATTCTTTTTTTTT+CGG | + | chr6.2:21383912-21383931 | MS.gene68929:intron | 20.0% |
| !!! | TTTTTCTTAGCATTGTTAAA+TGG | + | chr6.2:21384158-21384177 | MS.gene68929:intron | 20.0% |
| ! | AACAATGTGTAACACATAAT+TGG | + | chr6.2:21383675-21383694 | MS.gene68929:intron | 25.0% |
| ! | AATAGTAGTTATAGACATAG+TGG | + | chr6.2:21384324-21384343 | MS.gene68929:intron | 25.0% |
| ! | AGATATAACTGTAATTGCTA+TGG | - | chr6.2:21384544-21384563 | None:intergenic | 25.0% |
| ! | GTTAAACGAATTAGTTAATG+AGG | - | chr6.2:21383997-21384016 | None:intergenic | 25.0% |
| ! | TACCATCAAAAACATATGAT+TGG | - | chr6.2:21383522-21383541 | None:intergenic | 25.0% |
| !! | TCGTTTAACCATAATGTTTT+AGG | + | chr6.2:21384008-21384027 | MS.gene68929:intron | 25.0% |
| !!! | AAGAAAAATGTTTTTGGTTG+AGG | - | chr6.2:21384146-21384165 | None:intergenic | 25.0% |
| !!! | ATCCAATCATATGTTTTTGA+TGG | + | chr6.2:21383517-21383536 | MS.gene68929:CDS | 25.0% |
| !!! | CATATGTTTTTGATGGTATA+AGG | + | chr6.2:21383524-21383543 | MS.gene68929:intron | 25.0% |
| AATCAAATTACACGCACAAA+AGG | - | chr6.2:21384519-21384538 | None:intergenic | 30.0% | |
| ATAGAATCATGAAGCAGAAT+AGG | - | chr6.2:21383362-21383381 | None:intergenic | 30.0% | |
| ATGAAATGTCATGGTGAAAT+CGG | + | chr6.2:21383596-21383615 | MS.gene68929:intron | 30.0% | |
| CATTGTTAATGAGTGTAACT+TGG | - | chr6.2:21383662-21383681 | None:intergenic | 30.0% | |
| CTGTTGACAAAATCGAAAAA+AGG | - | chr6.2:21384569-21384588 | None:intergenic | 30.0% | |
| GTGAGTCCAAACAAATATAT+TGG | + | chr6.2:21384455-21384474 | MS.gene68929:intron | 30.0% | |
| TTAGTTAGTACTTATGTTCG+TGG | + | chr6.2:21384274-21384293 | MS.gene68929:intron | 30.0% | |
| ! | CAACATTTTGTACCAAATAG+CGG | - | chr6.2:21384301-21384320 | None:intergenic | 30.0% |
| ! | CTGTCATGAATTTGTTTGTT+AGG | + | chr6.2:21383396-21383415 | MS.gene68929:intron | 30.0% |
| !! | GGTTTTGTGTATAAGTATGT+TGG | + | chr6.2:21384242-21384261 | MS.gene68929:intron | 30.0% |
| AAATGTAGTGTTGTCAACCA+CGG | - | chr6.2:21384400-21384419 | None:intergenic | 35.0% | |
| AACCAACACAAAAACAAGCT+AGG | - | chr6.2:21384226-21384245 | None:intergenic | 35.0% | |
| ACAATACTTTGACACCATGA+AGG | + | chr6.2:21384809-21384828 | MS.gene68929:CDS | 35.0% | |
| ACCAACACAAAAACAAGCTA+GGG | - | chr6.2:21384225-21384244 | None:intergenic | 35.0% | |
| ATTAGAGATGGTCTTCTTCA+AGG | + | chr6.2:21384909-21384928 | MS.gene68929:CDS | 35.0% | |
| CAACATTGGACTGTAATACT+TGG | - | chr6.2:21383167-21383186 | None:intergenic | 35.0% | |
| CAATATCAACAATGAGAGTC+TGG | - | chr6.2:21384062-21384081 | None:intergenic | 35.0% | |
| CGACATCACCTAAAACATTA+TGG | - | chr6.2:21384019-21384038 | None:intergenic | 35.0% | |
| GCTCTCTTAACTTTAACATC+AGG | - | chr6.2:21384087-21384106 | None:intergenic | 35.0% | |
| GGATAATGTCTTTGTGAATG+TGG | + | chr6.2:21383417-21383436 | MS.gene68929:intron | 35.0% | |
| GTATAAGTATGTTGGCACAT+TGG | + | chr6.2:21384250-21384269 | MS.gene68929:intron | 35.0% | |
| GTTGCTATCAAAGAACACTT+TGG | + | chr6.2:21383183-21383202 | MS.gene68929:CDS | 35.0% | |
| TCCAAATATCTATCAGGACT+CGG | + | chr6.2:21384672-21384691 | MS.gene68929:CDS | 35.0% | |
| TTTGACACCATGAAGGAAAT+TGG | + | chr6.2:21384816-21384835 | MS.gene68929:CDS | 35.0% | |
| ! | GTGTTCTTTGATAGCAACAT+TGG | - | chr6.2:21383181-21383200 | None:intergenic | 35.0% |
| !! | TTTTAGGTGATGTCGATGTA+CGG | + | chr6.2:21384024-21384043 | MS.gene68929:intron | 35.0% |
| !!! | ATGTTTTTGGTTGAGGAACT+CGG | - | chr6.2:21384139-21384158 | None:intergenic | 35.0% |
| AAACGAAGAGTCACAAACCT+TGG | - | chr6.2:21383328-21383347 | None:intergenic | 40.0% | |
| ACAAGCTAGGGTGTAATTTG+CGG | - | chr6.2:21384213-21384232 | None:intergenic | 40.0% | |
| ACCGAGTCCTGATAGATATT+TGG | - | chr6.2:21384676-21384695 | None:intergenic | 40.0% | |
| AGCATTGTTAAATGGCGTCA+TGG | + | chr6.2:21384166-21384185 | MS.gene68929:intron | 40.0% | |
| AGCTAAAGATGTCATGGACA+TGG | + | chr6.2:21384776-21384795 | MS.gene68929:CDS | 40.0% | |
| ATTGCAGTGCAGATTAGAGA+TGG | + | chr6.2:21384897-21384916 | MS.gene68929:CDS | 40.0% | |
| CATAGCAAAGGCTATTGAAG+AGG | + | chr6.2:21383879-21383898 | MS.gene68929:CDS | 40.0% | |
| CTCACGTAGTAACACATCAT+TGG | - | chr6.2:21383635-21383654 | None:intergenic | 40.0% | |
| CTTCGGTAGATCATCATTGA+AGG | + | chr6.2:21383961-21383980 | MS.gene68929:intron | 40.0% | |
| GAACACAGATGAACACTTTG+AGG | - | chr6.2:21384847-21384866 | None:intergenic | 40.0% | |
| GACAACAGCTAAAGATGTCA+TGG | + | chr6.2:21384770-21384789 | MS.gene68929:CDS | 40.0% | |
| GCAGAAGAATGACATAGCAA+AGG | + | chr6.2:21383867-21383886 | MS.gene68929:CDS | 40.0% | |
| GCTGAGTCCAAATATCTATC+AGG | + | chr6.2:21384666-21384685 | MS.gene68929:CDS | 40.0% | |
| GTGAGCCTATAAAATGCATC+AGG | - | chr6.2:21383481-21383500 | None:intergenic | 40.0% | |
| TATTGAAGAGGAGCTTGAGA+AGG | + | chr6.2:21383891-21383910 | MS.gene68929:CDS | 40.0% | |
| TCATCTGTGTTCATACCACA+TGG | + | chr6.2:21384855-21384874 | MS.gene68929:CDS | 40.0% | |
| TGAATGCGAGACAAAAACCA+AGG | + | chr6.2:21383308-21383327 | MS.gene68929:CDS | 40.0% | |
| TTATAGGCTCACCAACACAA+GGG | + | chr6.2:21383489-21383508 | MS.gene68929:CDS | 40.0% | |
| TTTATAGGCTCACCAACACA+AGG | + | chr6.2:21383488-21383507 | MS.gene68929:CDS | 40.0% | |
| ! | AAGCGCCTGATGCATTTTAT+AGG | + | chr6.2:21383473-21383492 | MS.gene68929:CDS | 40.0% |
| ! | TTTGCTGATGTTTTGCAACC+TGG | + | chr6.2:21383210-21383229 | MS.gene68929:CDS | 40.0% |
| !!! | ACCCTAGCTTGTTTTTGTGT+TGG | + | chr6.2:21384221-21384240 | MS.gene68929:intron | 40.0% |
| AACAGCTGCGAGAATGAGAT+TGG | + | chr6.2:21384584-21384603 | MS.gene68929:intron | 45.0% | |
| AAGCCATTGTGGAAGGAATG+AGG | + | chr6.2:21384712-21384731 | MS.gene68929:CDS | 45.0% | |
| ACAGCATCCAGTTCCAACTT+TGG | - | chr6.2:21383841-21383860 | None:intergenic | 45.0% | |
| ACATCTTTAGCTGTTGTCCC+AGG | - | chr6.2:21384768-21384787 | None:intergenic | 45.0% | |
| ACTGCAGATCAAGAAAGCTG+AGG | + | chr6.2:21384638-21384657 | MS.gene68929:CDS | 45.0% | |
| AGATGTCATGGACATGGTGT+TGG | + | chr6.2:21384782-21384801 | MS.gene68929:CDS | 45.0% | |
| AGCCATTGTGGAAGGAATGA+GGG | + | chr6.2:21384713-21384732 | MS.gene68929:CDS | 45.0% | |
| ATCATGAAGCAGAATAGGCG+CGG | - | chr6.2:21383357-21383376 | None:intergenic | 45.0% | |
| ATCTGGTAACCTAGACACCA+AGG | - | chr6.2:21383249-21383268 | None:intergenic | 45.0% | |
| CTAGACACCAAGGCAAACAA+TGG | - | chr6.2:21383239-21383258 | None:intergenic | 45.0% | |
| CTGCAGATCAAGAAAGCTGA+GGG | + | chr6.2:21384639-21384658 | MS.gene68929:CDS | 45.0% | |
| GCTATGAACGAGATCAATGC+AGG | + | chr6.2:21384105-21384124 | MS.gene68929:CDS | 45.0% | |
| GGATGCACCAATTTCCTTCA+TGG | - | chr6.2:21384826-21384845 | None:intergenic | 45.0% | |
| TAGGTTACCAGATAGCTGGT+TGG | + | chr6.2:21383256-21383275 | MS.gene68929:CDS | 45.0% | |
| TATGTTCGTGGTCCGCTATT+TGG | + | chr6.2:21384286-21384305 | MS.gene68929:intron | 45.0% | |
| TGTCTAGGTTACCAGATAGC+TGG | + | chr6.2:21383252-21383271 | MS.gene68929:CDS | 45.0% | |
| TGTTGTCCCAGGTACATTCT+CGG | - | chr6.2:21384757-21384776 | None:intergenic | 45.0% | |
| TTGGATCTGTTCCCTTGTGT+TGG | - | chr6.2:21383503-21383522 | None:intergenic | 45.0% | |
| ! | CCACGGATTGTGGAAAATAG+CGG | - | chr6.2:21384383-21384402 | None:intergenic | 45.0% |
| ! | CGCATTCAATGTCAAGTTGC+TGG | - | chr6.2:21383296-21383315 | None:intergenic | 45.0% |
| !! | CATTGTTTGCCTTGGTGTCT+AGG | + | chr6.2:21383237-21383256 | MS.gene68929:CDS | 45.0% |
| ACGACAACGTCAAGCCATTG+TGG | + | chr6.2:21384701-21384720 | MS.gene68929:CDS | 50.0% | |
| CAACGTCAAGCCATTGTGGA+AGG | + | chr6.2:21384705-21384724 | MS.gene68929:CDS | 50.0% | |
| CAAGGCAAACAATGGCATCC+AGG | - | chr6.2:21383231-21383250 | None:intergenic | 50.0% | |
| CAGTGTGCCAAAGTTGGAAC+TGG | + | chr6.2:21383831-21383850 | MS.gene68929:CDS | 50.0% | |
| CAGTTCCAACTTTGGCACAC+TGG | - | chr6.2:21383833-21383852 | None:intergenic | 50.0% | |
| CGTTCTCCGAGAATGTACCT+GGG | + | chr6.2:21384748-21384767 | MS.gene68929:CDS | 50.0% | |
| CTGGATGCCATTGTTTGCCT+TGG | + | chr6.2:21383229-21383248 | MS.gene68929:CDS | 50.0% | |
| GTCCCTCATTCCTTCCACAA+TGG | - | chr6.2:21384718-21384737 | None:intergenic | 50.0% | |
| GTCTGTACAATACCGCGTTG+TGG | + | chr6.2:21383444-21383463 | MS.gene68929:CDS | 50.0% | |
| GTGTTCATACCACATGGTCC+AGG | + | chr6.2:21384861-21384880 | MS.gene68929:CDS | 50.0% | |
| ! | GAGATTGGCTACGAACGAGA+AGG | + | chr6.2:21384599-21384618 | MS.gene68929:CDS | 50.0% |
| ! | GTGTTGTCAACCACGGATTG+TGG | - | chr6.2:21384393-21384412 | None:intergenic | 50.0% |
| !! | ACATGGTCCAGGTGCTGTTA+GGG | + | chr6.2:21384872-21384891 | MS.gene68929:CDS | 50.0% |
| !! | CCGCTATTTTCCACAATCCG+TGG | + | chr6.2:21384380-21384399 | MS.gene68929:intron | 50.0% |
| AAGGGCCAGTGTGCCAAAGT+TGG | + | chr6.2:21383825-21383844 | MS.gene68929:CDS | 55.0% | |
| CTAACAGCACCTGGACCATG+TGG | - | chr6.2:21384873-21384892 | None:intergenic | 55.0% | |
| GCAATGTCCCTAACAGCACC+TGG | - | chr6.2:21384882-21384901 | None:intergenic | 55.0% | |
| GCGACAACCAACCAGCTATC+TGG | - | chr6.2:21383266-21383285 | None:intergenic | 55.0% | |
| GCGTTCTCCGAGAATGTACC+TGG | + | chr6.2:21384747-21384766 | MS.gene68929:CDS | 55.0% | |
| !! | CACATGGTCCAGGTGCTGTT+AGG | + | chr6.2:21384871-21384890 | MS.gene68929:CDS | 55.0% |
| GCGCTTTCTCAGCCACAACG+CGG | - | chr6.2:21383459-21383478 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 21383141 | 21384950 | 21383141 | ID=MS.gene68929 |
| chr6.2 | mRNA | 21383141 | 21384950 | 21383141 | ID=MS.gene68929.t1;Parent=MS.gene68929 |
| chr6.2 | exon | 21383141 | 21383329 | 21383141 | ID=MS.gene68929.t1.exon1;Parent=MS.gene68929.t1 |
| chr6.2 | CDS | 21383141 | 21383329 | 21383141 | ID=cds.MS.gene68929.t1;Parent=MS.gene68929.t1 |
| chr6.2 | exon | 21383418 | 21383538 | 21383418 | ID=MS.gene68929.t1.exon2;Parent=MS.gene68929.t1 |
| chr6.2 | CDS | 21383418 | 21383538 | 21383418 | ID=cds.MS.gene68929.t1;Parent=MS.gene68929.t1 |
| chr6.2 | exon | 21383821 | 21383912 | 21383821 | ID=MS.gene68929.t1.exon3;Parent=MS.gene68929.t1 |
| chr6.2 | CDS | 21383821 | 21383912 | 21383821 | ID=cds.MS.gene68929.t1;Parent=MS.gene68929.t1 |
| chr6.2 | exon | 21384030 | 21384126 | 21384030 | ID=MS.gene68929.t1.exon4;Parent=MS.gene68929.t1 |
| chr6.2 | CDS | 21384030 | 21384126 | 21384030 | ID=cds.MS.gene68929.t1;Parent=MS.gene68929.t1 |
| chr6.2 | exon | 21384589 | 21384950 | 21384589 | ID=MS.gene68929.t1.exon5;Parent=MS.gene68929.t1 |
| chr6.2 | CDS | 21384589 | 21384950 | 21384589 | ID=cds.MS.gene68929.t1;Parent=MS.gene68929.t1 |
| Gene Sequence |
| Protein sequence |