Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055768.t1 | XP_013465165.1 | 98.9 | 285 | 3 | 0 | 2 | 286 | 3 | 287 | 1.80E-147 | 531.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055768.t1 | O49460 | 86.3 | 285 | 39 | 0 | 2 | 286 | 3 | 287 | 4.4e-131 | 468.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055768.t1 | A0A072VM16 | 98.9 | 285 | 3 | 0 | 2 | 286 | 3 | 287 | 1.3e-147 | 531.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055768.t1 | MTR_2g090760 | 98.947 | 285 | 3 | 0 | 2 | 286 | 3 | 287 | 0.0 | 568 |
MS.gene055768.t1 | MTR_4g078200 | 84.775 | 289 | 41 | 1 | 1 | 286 | 4 | 292 | 1.21e-179 | 496 |
MS.gene055768.t1 | MTR_4g078200 | 89.565 | 230 | 24 | 0 | 57 | 286 | 2 | 231 | 8.19e-150 | 419 |
MS.gene055768.t1 | MTR_3g008250 | 51.786 | 280 | 127 | 4 | 10 | 285 | 3 | 278 | 2.76e-92 | 275 |
MS.gene055768.t1 | MTR_8g046300 | 53.755 | 253 | 114 | 2 | 25 | 274 | 20 | 272 | 3.18e-92 | 275 |
MS.gene055768.t1 | MTR_5g093030 | 32.044 | 181 | 108 | 3 | 3 | 182 | 12 | 178 | 5.47e-26 | 101 |
MS.gene055768.t1 | MTR_6g004320 | 35.075 | 134 | 49 | 1 | 95 | 228 | 1 | 96 | 2.98e-18 | 79.0 |
MS.gene055768.t1 | MTR_5g093040 | 36.842 | 95 | 54 | 1 | 25 | 119 | 18 | 106 | 3.94e-15 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055768.t1 | AT1G03860 | 81.119 | 286 | 53 | 1 | 1 | 285 | 1 | 286 | 3.96e-166 | 462 |
MS.gene055768.t1 | AT1G03860 | 81.119 | 286 | 53 | 1 | 1 | 285 | 1 | 286 | 3.96e-166 | 462 |
MS.gene055768.t1 | AT4G28510 | 86.316 | 285 | 39 | 0 | 2 | 286 | 3 | 287 | 1.39e-165 | 461 |
MS.gene055768.t1 | AT2G20530 | 81.469 | 286 | 52 | 1 | 1 | 286 | 1 | 285 | 1.64e-164 | 458 |
MS.gene055768.t1 | AT2G20530 | 81.469 | 286 | 52 | 1 | 1 | 286 | 1 | 285 | 1.64e-164 | 458 |
MS.gene055768.t1 | AT5G44140 | 76.259 | 278 | 65 | 1 | 1 | 277 | 1 | 278 | 4.92e-153 | 429 |
MS.gene055768.t1 | AT1G03860 | 86.878 | 221 | 29 | 0 | 65 | 285 | 1 | 221 | 2.82e-133 | 376 |
MS.gene055768.t1 | AT3G27280 | 51.838 | 272 | 126 | 2 | 15 | 285 | 12 | 279 | 6.42e-93 | 276 |
MS.gene055768.t1 | AT3G27280 | 51.838 | 272 | 126 | 2 | 15 | 285 | 12 | 279 | 6.42e-93 | 276 |
MS.gene055768.t1 | AT5G40770 | 53.257 | 261 | 121 | 1 | 15 | 274 | 12 | 272 | 2.95e-92 | 275 |
MS.gene055768.t1 | AT5G14300 | 46.091 | 243 | 104 | 2 | 33 | 274 | 22 | 238 | 8.03e-72 | 221 |
Find 80 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACACTTTACAGGTGAAAAT+TGG | 0.119569 | 2.1:+10112108 | MS.gene055768:intron |
TGCATCAACACTGGCGAAAT+TGG | 0.141061 | 2.1:+10110116 | MS.gene055768:CDS |
CATTTGGTTGAGAGTACTTC+TGG | 0.173279 | 2.1:+10110420 | MS.gene055768:CDS |
CTGGCGAAATTGGGAATTAT+TGG | 0.260992 | 2.1:+10110126 | MS.gene055768:CDS |
TTGGGAATTATTGGTGGAAT+TGG | 0.287106 | 2.1:+10110135 | MS.gene055768:CDS |
GCAAAAGATCACCTGCTTCC+AGG | 0.365181 | 2.1:-10113542 | None:intergenic |
GTCCTTACTCGTCCTTTGCC+TGG | 0.375759 | 2.1:+10112138 | MS.gene055768:CDS |
TTCTTGTGCAGCCACCTGCT+TGG | 0.376184 | 2.1:-10112775 | None:intergenic |
ATCACAAAATGCGTTCCTTC+AGG | 0.381268 | 2.1:-10110351 | None:intergenic |
CCCTCTCAGTCAGAATCTTC+CGG | 0.382058 | 2.1:-10112671 | None:intergenic |
AAAGTTTCATGTATGATTGA+AGG | 0.395524 | 2.1:-10112216 | None:intergenic |
TAAGTTGGCTGGCATTGTAC+TGG | 0.400052 | 2.1:-10112254 | None:intergenic |
GCCAGCTACCTACAGTTTAT+CGG | 0.406328 | 2.1:+10112160 | MS.gene055768:CDS |
CAATGGCTTGTCCGATCAGT+TGG | 0.421036 | 2.1:-10113431 | None:intergenic |
TGGAGAGAATTATAATGAAC+GGG | 0.425726 | 2.1:+10112188 | MS.gene055768:CDS |
ACACTTTACAGGTGAAAATT+GGG | 0.431100 | 2.1:+10112109 | MS.gene055768:intron |
GCATCAACACTGGCGAAATT+GGG | 0.431369 | 2.1:+10110117 | MS.gene055768:CDS |
ATTTGGTTGAGAGTACTTCT+GGG | 0.432938 | 2.1:+10110421 | MS.gene055768:CDS |
TGTTCGTGCACGTCCTCATT+TGG | 0.454482 | 2.1:+10110404 | MS.gene055768:CDS |
TTCCTCAGTGTGATGAAAGC+TGG | 0.472587 | 2.1:-10113462 | None:intergenic |
TCAATTACTAGTCTGACCTT+TGG | 0.487774 | 2.1:+10112726 | MS.gene055768:CDS |
TTCAGCAAACAAGGTTTACC+TGG | 0.493035 | 2.1:+10113524 | MS.gene055768:CDS |
TGCTGCAATTGAAGCCAAGC+AGG | 0.493081 | 2.1:+10112761 | MS.gene055768:CDS |
AACAGTCTTTACAATGTTGA+GGG | 0.493383 | 2.1:+10110174 | MS.gene055768:CDS |
GAATCTTCAGCGGATCAACT+TGG | 0.494004 | 2.1:+10113566 | MS.gene055768:CDS |
AAGTGCTGTAATTAGAGCAC+AGG | 0.500292 | 2.1:+10112845 | MS.gene055768:CDS |
GCGAAATTGGGAATTATTGG+TGG | 0.507313 | 2.1:+10110129 | MS.gene055768:CDS |
ATCAAGAGCAATGTTGAAGT+TGG | 0.509611 | 2.1:-10112697 | None:intergenic |
TGTGATGAAAGCTGGATTGT+TGG | 0.511259 | 2.1:-10113454 | None:intergenic |
GTTGATGCAGCGCCACCACT+TGG | 0.517803 | 2.1:-10110102 | None:intergenic |
CCTACAGTTTATCGGACCCT+TGG | 0.517966 | 2.1:+10112168 | MS.gene055768:CDS |
AGGCTGTTAGTCGTGAAATC+CGG | 0.519390 | 2.1:+10112652 | MS.gene055768:intron |
AATGGCTTGTCCGATCAGTT+GGG | 0.519729 | 2.1:-10113430 | None:intergenic |
TAACAGTCTTTACAATGTTG+AGG | 0.522899 | 2.1:+10110173 | MS.gene055768:CDS |
GTTCATTATAATTCTCTCCA+AGG | 0.524825 | 2.1:-10112185 | None:intergenic |
GGCCAGGCAAAGGACGAGTA+AGG | 0.525565 | 2.1:-10112140 | None:intergenic |
ATCGTGTTTAACCGTCTCGT+TGG | 0.527718 | 2.1:+10110210 | MS.gene055768:CDS |
GTTGTGTAGGTTTATCCTGA+AGG | 0.531470 | 2.1:+10110336 | MS.gene055768:intron |
TATTGCAAATTCAGCAAACA+AGG | 0.537639 | 2.1:+10113515 | MS.gene055768:CDS |
AACAAGGTTTACCTGGAAGC+AGG | 0.540987 | 2.1:+10113531 | MS.gene055768:CDS |
CCTCCCGCTGTGTAATAAGT+TGG | 0.543103 | 2.1:-10112269 | None:intergenic |
TCCGATAAACTGTAGGTAGC+TGG | 0.544929 | 2.1:-10112161 | None:intergenic |
TTGTGATTCCGTGGTTTGAG+AGG | 0.547203 | 2.1:+10110367 | MS.gene055768:CDS |
TTGGAGAGAATTATAATGAA+CGG | 0.549347 | 2.1:+10112187 | MS.gene055768:CDS |
CCGCTGTGTAATAAGTTGGC+TGG | 0.549719 | 2.1:-10112265 | None:intergenic |
GTAGGTAGCTGGCCAGGCAA+AGG | 0.551902 | 2.1:-10112150 | None:intergenic |
ATCACCGGCCTCTCAAACCA+CGG | 0.552231 | 2.1:-10110375 | None:intergenic |
AAGTTGGCTGGCATTGTACT+GGG | 0.555741 | 2.1:-10112253 | None:intergenic |
TTCATTATAATTCTCTCCAA+GGG | 0.556280 | 2.1:-10112184 | None:intergenic |
GAAGTACTCTCAACCAAATG+AGG | 0.567361 | 2.1:-10110417 | None:intergenic |
TACTAGTCTGACCTTTGGCA+AGG | 0.569845 | 2.1:+10112731 | MS.gene055768:CDS |
GATTCCGTGGTTTGAGAGGC+CGG | 0.570682 | 2.1:+10110371 | MS.gene055768:CDS |
CAGCCAACTTATTACACAGC+GGG | 0.571868 | 2.1:+10112266 | MS.gene055768:CDS |
GGCTGCACAAGAAGCTGAGA+GGG | 0.572538 | 2.1:+10112785 | MS.gene055768:CDS |
TGGTGGCGCTGCATCAACAC+TGG | 0.572841 | 2.1:+10110107 | MS.gene055768:CDS |
GCTAAAAGTGCCCAACTGAT+CGG | 0.574265 | 2.1:+10113420 | MS.gene055768:CDS |
TAAACTGTAGGTAGCTGGCC+AGG | 0.578326 | 2.1:-10112156 | None:intergenic |
TGAGAGGGCTAAATTTGTTG+TGG | 0.593905 | 2.1:+10112800 | MS.gene055768:CDS |
CCAAGGGTCCGATAAACTGT+AGG | 0.602094 | 2.1:-10112168 | None:intergenic |
AACGCGAAAGTTCCAAGTGG+TGG | 0.602185 | 2.1:+10110090 | MS.gene055768:CDS |
GAGGAAGATAGAAGCCGCGA+GGG | 0.603991 | 2.1:+10113479 | MS.gene055768:CDS |
TGGGAGTCGTGATCTGCAGA+TGG | 0.609717 | 2.1:+10110440 | MS.gene055768:CDS |
CCGGAAGATTCTGACTGAGA+GGG | 0.615174 | 2.1:+10112671 | MS.gene055768:CDS |
TCCGGAAGATTCTGACTGAG+AGG | 0.615920 | 2.1:+10112670 | MS.gene055768:CDS |
TGTCTTTGACACCAACGAGA+CGG | 0.624230 | 2.1:-10110221 | None:intergenic |
TGCAATTGAAGCCAAGCAGG+TGG | 0.632190 | 2.1:+10112764 | MS.gene055768:CDS |
GAAAGCTGGATTGTTGGCAA+TGG | 0.633552 | 2.1:-10113448 | None:intergenic |
ACATGAAACTTTGAAAGCTG+TGG | 0.633777 | 2.1:+10112227 | MS.gene055768:CDS |
TGGCTGCACAAGAAGCTGAG+AGG | 0.639141 | 2.1:+10112784 | MS.gene055768:CDS |
GCACGAACATCATAGATCAC+CGG | 0.645792 | 2.1:-10110390 | None:intergenic |
GACGGTTAAACACGATAGCA+CGG | 0.646783 | 2.1:-10110203 | None:intergenic |
AGCAGTAAACTCCTTGCCAA+AGG | 0.656274 | 2.1:-10112742 | None:intergenic |
AGTCTTTACAATGTTGAGGG+AGG | 0.662722 | 2.1:+10110177 | MS.gene055768:CDS |
TCTCGTTGGTGTCAAAGACA+AGG | 0.674892 | 2.1:+10110224 | MS.gene055768:CDS |
CCAACTTATTACACAGCGGG+AGG | 0.682391 | 2.1:+10112269 | MS.gene055768:CDS |
TGAGGAAGATAGAAGCCGCG+AGG | 0.696862 | 2.1:+10113478 | MS.gene055768:CDS |
AACATGTGCTATCTCCCTCG+CGG | 0.711001 | 2.1:-10113493 | None:intergenic |
AAGAACGCGAAAGTTCCAAG+TGG | 0.742151 | 2.1:+10110087 | MS.gene055768:CDS |
ATCCAGCTTTCATCACACTG+AGG | 0.780168 | 2.1:+10113460 | MS.gene055768:CDS |
CCAGCCAACTTATTACACAG+CGG | 0.790079 | 2.1:+10112265 | MS.gene055768:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAACATTTCTAAATTTAA+AGG | - | chr2.1:10111223-10111242 | None:intergenic | 10.0% |
!! | TAAACATTTCTAAATTTAAA+GGG | - | chr2.1:10111222-10111241 | None:intergenic | 10.0% |
!!! | AGTTTTAATTAATAATTCAT+AGG | + | chr2.1:10111970-10111989 | MS.gene055768:intron | 10.0% |
!! | ATATAAGCTATTTATAAAAC+TGG | - | chr2.1:10111147-10111166 | None:intergenic | 15.0% |
!! | GAATATGATATATCAAAAAT+GGG | - | chr2.1:10111333-10111352 | None:intergenic | 15.0% |
!! | GTTAAATGTTTCTTATAAAT+AGG | - | chr2.1:10111519-10111538 | None:intergenic | 15.0% |
!! | TGAATATGATATATCAAAAA+TGG | - | chr2.1:10111334-10111353 | None:intergenic | 15.0% |
!! | TTTGATATATCATATTCAAA+TGG | + | chr2.1:10111336-10111355 | MS.gene055768:intron | 15.0% |
!!! | ATTATGTCTTCTAATATTTT+TGG | + | chr2.1:10111933-10111952 | MS.gene055768:intron | 15.0% |
!!! | TTTATTTTATCTTTAGCTAT+AGG | - | chr2.1:10110558-10110577 | None:intergenic | 15.0% |
!! | AAACATAATGAAACATATAG+AGG | - | chr2.1:10110960-10110979 | None:intergenic | 20.0% |
!! | AAATAATCTAACATAATGAC+AGG | - | chr2.1:10112380-10112399 | None:intergenic | 20.0% |
!! | ACATCCTACAATTTATTTAT+TGG | + | chr2.1:10112517-10112536 | MS.gene055768:intron | 20.0% |
!! | ATGTTTCTTATAAATAGGAA+AGG | - | chr2.1:10111514-10111533 | None:intergenic | 20.0% |
!! | ATTCATGAAAATTATATCAC+TGG | - | chr2.1:10110985-10111004 | None:intergenic | 20.0% |
!! | ATTTACACATAATACTTTCA+AGG | - | chr2.1:10112454-10112473 | None:intergenic | 20.0% |
!! | CAAACCAATAAATAAATTGT+AGG | - | chr2.1:10112524-10112543 | None:intergenic | 20.0% |
!! | GAGAAAAATCTAAATACTAA+CGG | - | chr2.1:10111412-10111431 | None:intergenic | 20.0% |
!! | TTAATAGATCTATTCTTTGT+AGG | + | chr2.1:10112632-10112651 | MS.gene055768:intron | 20.0% |
!! | TTTGTGAATTGAAATGATAT+GGG | + | chr2.1:10110303-10110322 | MS.gene055768:intron | 20.0% |
!!! | AACTGTATTCAGATTTTAAA+AGG | + | chr2.1:10111020-10111039 | MS.gene055768:intron | 20.0% |
!!! | ATTTTCATGTAGAATACATT+CGG | + | chr2.1:10112937-10112956 | MS.gene055768:intron | 20.0% |
!!! | GTCAACTTTTTCTTATAAAT+AGG | + | chr2.1:10111618-10111637 | MS.gene055768:intron | 20.0% |
!!! | TCGTTTTACAAAGTTTATAT+TGG | + | chr2.1:10111094-10111113 | MS.gene055768:intron | 20.0% |
!!! | TGATTTGAAATAGTTCTTAA+GGG | - | chr2.1:10111700-10111719 | None:intergenic | 20.0% |
!!! | TTTTGTGAATTGAAATGATA+TGG | + | chr2.1:10110302-10110321 | MS.gene055768:intron | 20.0% |
! | AAAGTTTCATGTATGATTGA+AGG | - | chr2.1:10112219-10112238 | None:intergenic | 25.0% |
! | AATCTATAAACTTGAAGTAC+TGG | - | chr2.1:10112029-10112048 | None:intergenic | 25.0% |
! | CATTGCATAAATGATGTATT+TGG | + | chr2.1:10111549-10111568 | MS.gene055768:intron | 25.0% |
! | CTTATGTATAAGTTTGCATA+AGG | + | chr2.1:10110528-10110547 | MS.gene055768:intron | 25.0% |
! | TATCATATTCAAATGGTGTA+AGG | + | chr2.1:10111343-10111362 | MS.gene055768:intron | 25.0% |
! | TATTGATCAACATTGAATGT+TGG | + | chr2.1:10113333-10113352 | MS.gene055768:intron | 25.0% |
! | TCTAAATAAAACTGGATTTC+AGG | - | chr2.1:10110761-10110780 | None:intergenic | 25.0% |
! | TGAAAAAAGCTTATGCAAAA+TGG | + | chr2.1:10110647-10110666 | MS.gene055768:intron | 25.0% |
! | TTCATAAAACATATGCTACT+GGG | - | chr2.1:10112488-10112507 | None:intergenic | 25.0% |
! | TTCATTATAATTCTCTCCAA+GGG | - | chr2.1:10112187-10112206 | None:intergenic | 25.0% |
! | TTCTTATAAATAGGAAAGGA+GGG | - | chr2.1:10111510-10111529 | None:intergenic | 25.0% |
! | TTGGAGAGAATTATAATGAA+CGG | + | chr2.1:10112187-10112206 | MS.gene055768:CDS | 25.0% |
! | TTTCATAAAACATATGCTAC+TGG | - | chr2.1:10112489-10112508 | None:intergenic | 25.0% |
! | TTTCTTAAACAATGACCTTA+GGG | + | chr2.1:10113239-10113258 | MS.gene055768:intron | 25.0% |
! | TTTCTTATAAATAGGAAAGG+AGG | - | chr2.1:10111511-10111530 | None:intergenic | 25.0% |
!! | ATACATAATGATTTTCAGAC+AGG | - | chr2.1:10110873-10110892 | None:intergenic | 25.0% |
!! | CTGATTTGAAATAGTTCTTA+AGG | - | chr2.1:10111701-10111720 | None:intergenic | 25.0% |
!! | CTTTTTCTTATAAATAGGAC+CGG | + | chr2.1:10111623-10111642 | MS.gene055768:intron | 25.0% |
!! | GATTTGAAATAGTTCTTAAG+GGG | - | chr2.1:10111699-10111718 | None:intergenic | 25.0% |
!! | TGGTTTGAATTCATTTTAAG+TGG | + | chr2.1:10112537-10112556 | MS.gene055768:intron | 25.0% |
!! | TTATTTTCATAAGTTCTCCA+AGG | - | chr2.1:10110625-10110644 | None:intergenic | 25.0% |
!!! | ATATTTTTGGATGTCAATGT+TGG | + | chr2.1:10111946-10111965 | MS.gene055768:intron | 25.0% |
!!! | GGTTTGAATTCATTTTAAGT+GGG | + | chr2.1:10112538-10112557 | MS.gene055768:intron | 25.0% |
!!! | TCTTTTGATTCCTTAAACAA+TGG | - | chr2.1:10113141-10113160 | None:intergenic | 25.0% |
AAACAACAAAAACATGTACC+AGG | - | chr2.1:10112913-10112932 | None:intergenic | 30.0% | |
AAATCTGGTTGTGTTTAATG+TGG | + | chr2.1:10113078-10113097 | MS.gene055768:intron | 30.0% | |
AACAGTCTTTACAATGTTGA+GGG | + | chr2.1:10110174-10110193 | MS.gene055768:CDS | 30.0% | |
AATAAGTTGTTCATCCAAAC+AGG | - | chr2.1:10110472-10110491 | None:intergenic | 30.0% | |
AATCTGGTTGTGTTTAATGT+GGG | + | chr2.1:10113079-10113098 | MS.gene055768:intron | 30.0% | |
AATTGACTGAGATGTAAAAC+TGG | - | chr2.1:10113314-10113333 | None:intergenic | 30.0% | |
ACACTTTACAGGTGAAAATT+GGG | + | chr2.1:10112109-10112128 | MS.gene055768:intron | 30.0% | |
ACATTACTTTGTTAACTAGG+GGG | - | chr2.1:10110930-10110949 | None:intergenic | 30.0% | |
AGCTATTTATAAAACTGGAG+AGG | - | chr2.1:10111142-10111161 | None:intergenic | 30.0% | |
AGGACATTACTTTGTTAACT+AGG | - | chr2.1:10110933-10110952 | None:intergenic | 30.0% | |
AGTAACTGCATAAGAATTCA+CGG | - | chr2.1:10112881-10112900 | None:intergenic | 30.0% | |
AGTATGAATGATGCACATAA+CGG | - | chr2.1:10110900-10110919 | None:intergenic | 30.0% | |
ATAAGTTGTTCATCCAAACA+GGG | - | chr2.1:10110471-10110490 | None:intergenic | 30.0% | |
ATACCATCACAAAGAATAGA+GGG | - | chr2.1:10110849-10110868 | None:intergenic | 30.0% | |
ATGAAACATATAGAGGATTG+AGG | - | chr2.1:10110953-10110972 | None:intergenic | 30.0% | |
ATTCAGAGGCTAAACATAAA+AGG | - | chr2.1:10111842-10111861 | None:intergenic | 30.0% | |
ATTGGAGTTTACCTTTGTTA+AGG | + | chr2.1:10111112-10111131 | MS.gene055768:intron | 30.0% | |
CATGCAAGTCTAAATAAAAC+TGG | - | chr2.1:10110769-10110788 | None:intergenic | 30.0% | |
CATTGAGTAACTAATGTACT+TGG | - | chr2.1:10111588-10111607 | None:intergenic | 30.0% | |
CTTGATTTCGTTGAATTCAT+CGG | + | chr2.1:10110279-10110298 | MS.gene055768:intron | 30.0% | |
GACATTACTTTGTTAACTAG+GGG | - | chr2.1:10110931-10110950 | None:intergenic | 30.0% | |
GGACATTACTTTGTTAACTA+GGG | - | chr2.1:10110932-10110951 | None:intergenic | 30.0% | |
GTCATTGTTTAAGAAACTCA+AGG | - | chr2.1:10113235-10113254 | None:intergenic | 30.0% | |
GTTCATTATAATTCTCTCCA+AGG | - | chr2.1:10112188-10112207 | None:intergenic | 30.0% | |
GTTTCTTAAACAATGACCTT+AGG | + | chr2.1:10113238-10113257 | MS.gene055768:intron | 30.0% | |
TAACAGTCTTTACAATGTTG+AGG | + | chr2.1:10110173-10110192 | MS.gene055768:CDS | 30.0% | |
TATACCATCACAAAGAATAG+AGG | - | chr2.1:10110850-10110869 | None:intergenic | 30.0% | |
TATTGCAAATTCAGCAAACA+AGG | + | chr2.1:10113515-10113534 | MS.gene055768:CDS | 30.0% | |
TGGAGAGAATTATAATGAAC+GGG | + | chr2.1:10112188-10112207 | MS.gene055768:CDS | 30.0% | |
TTCAGAGGCTAAACATAAAA+GGG | - | chr2.1:10111841-10111860 | None:intergenic | 30.0% | |
TTGATGTGTAAAAAAGGTCA+GGG | - | chr2.1:10113391-10113410 | None:intergenic | 30.0% | |
! | TCAACAATGATTTTGCAATC+AGG | - | chr2.1:10111262-10111281 | None:intergenic | 30.0% |
!! | AAACTTGAAGTACTGGAAAT+TGG | - | chr2.1:10112022-10112041 | None:intergenic | 30.0% |
!! | AAAGACAAGGTCATTTTCTA+GGG | + | chr2.1:10110237-10110256 | MS.gene055768:intron | 30.0% |
!! | ATTTTTCAAACCATGTTGCT+TGG | + | chr2.1:10112332-10112351 | MS.gene055768:intron | 30.0% |
!! | TTTTTCAAACCATGTTGCTT+GGG | + | chr2.1:10112333-10112352 | MS.gene055768:intron | 30.0% |
!!! | ACCTTTTTTACACATCAACA+GGG | + | chr2.1:10113393-10113412 | MS.gene055768:intron | 30.0% |
!!! | TTCCACATGAATTTGTTTTG+AGG | + | chr2.1:10111054-10111073 | MS.gene055768:intron | 30.0% |
AAAGGGAAATTCAGACTACA+AGG | - | chr2.1:10111824-10111843 | None:intergenic | 35.0% | |
AAATACTAACAAGTGCCCTT+AGG | + | chr2.1:10113115-10113134 | MS.gene055768:intron | 35.0% | |
AACTCAAGGAAACTTTGTCT+AGG | - | chr2.1:10113221-10113240 | None:intergenic | 35.0% | |
ACATTTCAATCTTGTGATCC+TGG | + | chr2.1:10111443-10111462 | MS.gene055768:intron | 35.0% | |
ACCCTGTTGATGTGTAAAAA+AGG | - | chr2.1:10113397-10113416 | None:intergenic | 35.0% | |
ACTGTCTTTGTTCACAAATC+TGG | + | chr2.1:10113063-10113082 | MS.gene055768:intron | 35.0% | |
AGAGTATGATGCAAATTCAG+AGG | - | chr2.1:10111856-10111875 | None:intergenic | 35.0% | |
AGGGAGTAGACAATAATCAT+CGG | - | chr2.1:10111491-10111510 | None:intergenic | 35.0% | |
ATCAAGAGCAATGTTGAAGT+TGG | - | chr2.1:10112700-10112719 | None:intergenic | 35.0% | |
ATTCCTTAAACAATGGCCTA+AGG | - | chr2.1:10113134-10113153 | None:intergenic | 35.0% | |
CAACAATTAAATACTCCCTC+CGG | - | chr2.1:10111645-10111664 | None:intergenic | 35.0% | |
CACACTTTACAGGTGAAAAT+TGG | + | chr2.1:10112108-10112127 | MS.gene055768:intron | 35.0% | |
CATGATGTTGGATACATCTT+TGG | + | chr2.1:10113028-10113047 | MS.gene055768:intron | 35.0% | |
CATTACTTTGTTAACTAGGG+GGG | - | chr2.1:10110929-10110948 | None:intergenic | 35.0% | |
CTCCTCAAAACAAATTCATG+TGG | - | chr2.1:10111059-10111078 | None:intergenic | 35.0% | |
GTCTGTGTGGTGATTTAAAA+TGG | + | chr2.1:10111754-10111773 | MS.gene055768:intron | 35.0% | |
GTTATGTGCATCATTCATAC+TGG | + | chr2.1:10110899-10110918 | MS.gene055768:intron | 35.0% | |
GTTGATGTGTAAAAAAGGTC+AGG | - | chr2.1:10113392-10113411 | None:intergenic | 35.0% | |
TAGACTTGCATGTCATCATT+AGG | + | chr2.1:10110777-10110796 | MS.gene055768:intron | 35.0% | |
TATAGTTAAGTCCAAATGCC+AGG | - | chr2.1:10111464-10111483 | None:intergenic | 35.0% | |
TCATAGGTAGCAAAGATGTT+TGG | + | chr2.1:10111986-10112005 | MS.gene055768:intron | 35.0% | |
TGATGTGTAAAAAAGGTCAG+GGG | - | chr2.1:10113390-10113409 | None:intergenic | 35.0% | |
TGTTCTCTTGATCATGATGT+TGG | + | chr2.1:10113016-10113035 | MS.gene055768:intron | 35.0% | |
TTAAATCACCACACAGACAA+CGG | - | chr2.1:10111752-10111771 | None:intergenic | 35.0% | |
TTCCTTAAACAATGGCCTAA+GGG | - | chr2.1:10113133-10113152 | None:intergenic | 35.0% | |
TTCTTATAAATAGGACCGGA+GGG | + | chr2.1:10111627-10111646 | MS.gene055768:intron | 35.0% | |
TTGAGCTAATCTCTTGACAT+AGG | - | chr2.1:10110715-10110734 | None:intergenic | 35.0% | |
TTGGGAATTATTGGTGGAAT+TGG | + | chr2.1:10110135-10110154 | MS.gene055768:CDS | 35.0% | |
TTTCCCTCTATTCTTTGTGA+TGG | + | chr2.1:10110843-10110862 | MS.gene055768:intron | 35.0% | |
TTTCTTATAAATAGGACCGG+AGG | + | chr2.1:10111626-10111645 | MS.gene055768:intron | 35.0% | |
! | ACATGAAACTTTGAAAGCTG+TGG | + | chr2.1:10112227-10112246 | MS.gene055768:CDS | 35.0% |
! | ATCTTTTGCTGAATCTTCAG+CGG | + | chr2.1:10113556-10113575 | MS.gene055768:CDS | 35.0% |
! | GAAGTATTTGAACAACTGCT+AGG | + | chr2.1:10111280-10111299 | MS.gene055768:intron | 35.0% |
! | TCAATTACTAGTCTGACCTT+TGG | + | chr2.1:10112726-10112745 | MS.gene055768:CDS | 35.0% |
! | TTTTGATGCCGTTAAACATC+TGG | + | chr2.1:10111791-10111810 | MS.gene055768:intron | 35.0% |
!! | AGATAAGACAGTGCTAGTTT+TGG | - | chr2.1:10112993-10113012 | None:intergenic | 35.0% |
!! | ATTTGGTTGAGAGTACTTCT+GGG | + | chr2.1:10110421-10110440 | MS.gene055768:CDS | 35.0% |
!! | CAAAGACAAGGTCATTTTCT+AGG | + | chr2.1:10110236-10110255 | MS.gene055768:intron | 35.0% |
!!! | AAGGTCATTTTCTAGGGTTT+AGG | + | chr2.1:10110243-10110262 | MS.gene055768:intron | 35.0% |
!!! | AGGTCATTTTCTAGGGTTTA+GGG | + | chr2.1:10110244-10110263 | MS.gene055768:intron | 35.0% |
!!! | ATAAGACAGTGCTAGTTTTG+GGG | - | chr2.1:10112991-10113010 | None:intergenic | 35.0% |
!!! | GACCTTTTTTACACATCAAC+AGG | + | chr2.1:10113392-10113411 | MS.gene055768:intron | 35.0% |
!!! | GATAAGACAGTGCTAGTTTT+GGG | - | chr2.1:10112992-10113011 | None:intergenic | 35.0% |
AACTGGATTTCAGGCATGTT+TGG | - | chr2.1:10110752-10110771 | None:intergenic | 40.0% | |
AATCTTGTGATCCTGGCATT+TGG | + | chr2.1:10111450-10111469 | MS.gene055768:intron | 40.0% | |
ACCTGTAAAGTGTGTACATG+CGG | - | chr2.1:10112102-10112121 | None:intergenic | 40.0% | |
AGTCTTTACAATGTTGAGGG+AGG | + | chr2.1:10110177-10110196 | MS.gene055768:CDS | 40.0% | |
ATCAAACAACCCTGTGAAAG+TGG | - | chr2.1:10111908-10111927 | None:intergenic | 40.0% | |
ATCACAAAATGCGTTCCTTC+AGG | - | chr2.1:10110354-10110373 | None:intergenic | 40.0% | |
ATGTGTAAAAAAGGTCAGGG+GGG | - | chr2.1:10113388-10113407 | None:intergenic | 40.0% | |
CTGGCGAAATTGGGAATTAT+TGG | + | chr2.1:10110126-10110145 | MS.gene055768:CDS | 40.0% | |
GATGTGTAAAAAAGGTCAGG+GGG | - | chr2.1:10113389-10113408 | None:intergenic | 40.0% | |
GATTTCAGGCATGTTTGGAT+TGG | - | chr2.1:10110747-10110766 | None:intergenic | 40.0% | |
GCCAATCACCAGATGTTTAA+CGG | - | chr2.1:10111802-10111821 | None:intergenic | 40.0% | |
GCGAAATTGGGAATTATTGG+TGG | + | chr2.1:10110129-10110148 | MS.gene055768:CDS | 40.0% | |
GTATTTGAACAACTGCTAGG+TGG | + | chr2.1:10111283-10111302 | MS.gene055768:intron | 40.0% | |
GTTGTGTAGGTTTATCCTGA+AGG | + | chr2.1:10110336-10110355 | MS.gene055768:intron | 40.0% | |
TCAAACAACCCTGTGAAAGT+GGG | - | chr2.1:10111907-10111926 | None:intergenic | 40.0% | |
TGTGATGAAAGCTGGATTGT+TGG | - | chr2.1:10113457-10113476 | None:intergenic | 40.0% | |
TTCAGCAAACAAGGTTTACC+TGG | + | chr2.1:10113524-10113543 | MS.gene055768:CDS | 40.0% | |
TTCTTATGCAGTTACTGCTG+TGG | + | chr2.1:10112885-10112904 | MS.gene055768:intron | 40.0% | |
! | AAGTGCTGTAATTAGAGCAC+AGG | + | chr2.1:10112845-10112864 | MS.gene055768:CDS | 40.0% |
! | CTCTTGACATAGGTATTGTG+AGG | - | chr2.1:10110705-10110724 | None:intergenic | 40.0% |
! | GAAGTACTCTCAACCAAATG+AGG | - | chr2.1:10110420-10110439 | None:intergenic | 40.0% |
! | TTTTACACATCAACAGGGTG+AGG | + | chr2.1:10113398-10113417 | MS.gene055768:intron | 40.0% |
!! | CATTTGGTTGAGAGTACTTC+TGG | + | chr2.1:10110420-10110439 | MS.gene055768:CDS | 40.0% |
!! | GCTGTTTTCATAAGCTACCT+TGG | + | chr2.1:10110605-10110624 | MS.gene055768:intron | 40.0% |
!! | TGAGAGGGCTAAATTTGTTG+TGG | + | chr2.1:10112800-10112819 | MS.gene055768:CDS | 40.0% |
!!! | GGTCATTTTCTAGGGTTTAG+GGG | + | chr2.1:10110245-10110264 | MS.gene055768:intron | 40.0% |
AACAAGGTTTACCTGGAAGC+AGG | + | chr2.1:10113531-10113550 | MS.gene055768:CDS | 45.0% | |
AACACGTCATGCTAACCCTA+AGG | - | chr2.1:10113257-10113276 | None:intergenic | 45.0% | |
AAGAACGCGAAAGTTCCAAG+TGG | + | chr2.1:10110087-10110106 | MS.gene055768:CDS | 45.0% | |
AAGTTGGCTGGCATTGTACT+GGG | - | chr2.1:10112256-10112275 | None:intergenic | 45.0% | |
ACCGCATGTACACACTTTAC+AGG | + | chr2.1:10112098-10112117 | MS.gene055768:intron | 45.0% | |
AGCAGTAAACTCCTTGCCAA+AGG | - | chr2.1:10112745-10112764 | None:intergenic | 45.0% | |
AGGCTGTTAGTCGTGAAATC+CGG | + | chr2.1:10112652-10112671 | MS.gene055768:intron | 45.0% | |
ATCCAGCTTTCATCACACTG+AGG | + | chr2.1:10113460-10113479 | MS.gene055768:CDS | 45.0% | |
ATCGTGTTTAACCGTCTCGT+TGG | + | chr2.1:10110210-10110229 | MS.gene055768:CDS | 45.0% | |
CAGCCAACTTATTACACAGC+GGG | + | chr2.1:10112266-10112285 | MS.gene055768:CDS | 45.0% | |
CCAGCCAACTTATTACACAG+CGG | + | chr2.1:10112265-10112284 | MS.gene055768:CDS | 45.0% | |
GAAAGCTGGATTGTTGGCAA+TGG | - | chr2.1:10113451-10113470 | None:intergenic | 45.0% | |
GAATCTTCAGCGGATCAACT+TGG | + | chr2.1:10113566-10113585 | MS.gene055768:CDS | 45.0% | |
GACGGTTAAACACGATAGCA+CGG | - | chr2.1:10110206-10110225 | None:intergenic | 45.0% | |
GATCATTTCCGTTGTCTGTG+TGG | + | chr2.1:10111741-10111760 | MS.gene055768:intron | 45.0% | |
GCACGAACATCATAGATCAC+CGG | - | chr2.1:10110393-10110412 | None:intergenic | 45.0% | |
GCATCAACACTGGCGAAATT+GGG | + | chr2.1:10110117-10110136 | MS.gene055768:CDS | 45.0% | |
GCCAGCTACCTACAGTTTAT+CGG | + | chr2.1:10112160-10112179 | MS.gene055768:CDS | 45.0% | |
GCCGTTAAACATCTGGTGAT+TGG | + | chr2.1:10111798-10111817 | MS.gene055768:intron | 45.0% | |
GGAGAGGCAATCCTTAACAA+AGG | - | chr2.1:10111126-10111145 | None:intergenic | 45.0% | |
TACTTTGTTAACTAGGGGGG+TGG | - | chr2.1:10110926-10110945 | None:intergenic | 45.0% | |
TCCGATAAACTGTAGGTAGC+TGG | - | chr2.1:10112164-10112183 | None:intergenic | 45.0% | |
TCCTTTCTCCCACTTTCACA+GGG | + | chr2.1:10111896-10111915 | MS.gene055768:intron | 45.0% | |
TGCATCAACACTGGCGAAAT+TGG | + | chr2.1:10110116-10110135 | MS.gene055768:CDS | 45.0% | |
TGCCCTTAGGCCATTGTTTA+AGG | + | chr2.1:10113128-10113147 | MS.gene055768:intron | 45.0% | |
TGTCTTTGACACCAACGAGA+CGG | - | chr2.1:10110224-10110243 | None:intergenic | 45.0% | |
TTCCTCAGTGTGATGAAAGC+TGG | - | chr2.1:10113465-10113484 | None:intergenic | 45.0% | |
TTGTGATTCCGTGGTTTGAG+AGG | + | chr2.1:10110367-10110386 | MS.gene055768:CDS | 45.0% | |
! | AATGGCTTGTCCGATCAGTT+GGG | - | chr2.1:10113433-10113452 | None:intergenic | 45.0% |
! | GAACGCATTTTGTGATTCCG+TGG | + | chr2.1:10110358-10110377 | MS.gene055768:CDS | 45.0% |
! | TAAGTTGGCTGGCATTGTAC+TGG | - | chr2.1:10112257-10112276 | None:intergenic | 45.0% |
! | TACTAGTCTGACCTTTGGCA+AGG | + | chr2.1:10112731-10112750 | MS.gene055768:CDS | 45.0% |
!! | GCTAAAAGTGCCCAACTGAT+CGG | + | chr2.1:10113420-10113439 | MS.gene055768:CDS | 45.0% |
!! | GGGTGTGTTGTTTGTTGTGT+AGG | + | chr2.1:10110323-10110342 | MS.gene055768:intron | 45.0% |
!! | TCTCGTTGGTGTCAAAGACA+AGG | + | chr2.1:10110224-10110243 | MS.gene055768:CDS | 45.0% |
AACATGTGCTATCTCCCTCG+CGG | - | chr2.1:10113496-10113515 | None:intergenic | 50.0% | |
AACGCGAAAGTTCCAAGTGG+TGG | + | chr2.1:10110090-10110109 | MS.gene055768:CDS | 50.0% | |
ACCCTGTGAAAGTGGGAGAA+AGG | - | chr2.1:10111900-10111919 | None:intergenic | 50.0% | |
CCAACTTATTACACAGCGGG+AGG | + | chr2.1:10112269-10112288 | MS.gene055768:CDS | 50.0% | |
CCAAGGGTCCGATAAACTGT+AGG | - | chr2.1:10112171-10112190 | None:intergenic | 50.0% | |
CCCTCTCAGTCAGAATCTTC+CGG | - | chr2.1:10112674-10112693 | None:intergenic | 50.0% | |
CCGGAAGATTCTGACTGAGA+GGG | + | chr2.1:10112671-10112690 | MS.gene055768:CDS | 50.0% | |
CCTACAGTTTATCGGACCCT+TGG | + | chr2.1:10112168-10112187 | MS.gene055768:CDS | 50.0% | |
CCTCCCGCTGTGTAATAAGT+TGG | - | chr2.1:10112272-10112291 | None:intergenic | 50.0% | |
GATACCTCACCCAAGCAACA+TGG | - | chr2.1:10112345-10112364 | None:intergenic | 50.0% | |
GCAAAAGATCACCTGCTTCC+AGG | - | chr2.1:10113545-10113564 | None:intergenic | 50.0% | |
GCAGATGGTAAGTCCCTGTT+TGG | + | chr2.1:10110455-10110474 | MS.gene055768:intron | 50.0% | |
GTCCTTTCTCCCACTTTCAC+AGG | + | chr2.1:10111895-10111914 | MS.gene055768:intron | 50.0% | |
TAAACTGTAGGTAGCTGGCC+AGG | - | chr2.1:10112159-10112178 | None:intergenic | 50.0% | |
TCCGGAAGATTCTGACTGAG+AGG | + | chr2.1:10112670-10112689 | MS.gene055768:CDS | 50.0% | |
TGCAATTGAAGCCAAGCAGG+TGG | + | chr2.1:10112764-10112783 | MS.gene055768:CDS | 50.0% | |
TGCTGCAATTGAAGCCAAGC+AGG | + | chr2.1:10112761-10112780 | MS.gene055768:CDS | 50.0% | |
TGTTCGTGCACGTCCTCATT+TGG | + | chr2.1:10110404-10110423 | MS.gene055768:CDS | 50.0% | |
! | CAAACCATGTTGCTTGGGTG+AGG | + | chr2.1:10112338-10112357 | MS.gene055768:intron | 50.0% |
! | CAATGGCTTGTCCGATCAGT+TGG | - | chr2.1:10113434-10113453 | None:intergenic | 50.0% |
! | CCGCTGTGTAATAAGTTGGC+TGG | - | chr2.1:10112268-10112287 | None:intergenic | 50.0% |
ATCACCGGCCTCTCAAACCA+CGG | - | chr2.1:10110378-10110397 | None:intergenic | 55.0% | |
GAGGAAGATAGAAGCCGCGA+GGG | + | chr2.1:10113479-10113498 | MS.gene055768:CDS | 55.0% | |
GATTCCGTGGTTTGAGAGGC+CGG | + | chr2.1:10110371-10110390 | MS.gene055768:CDS | 55.0% | |
GGCTGCACAAGAAGCTGAGA+GGG | + | chr2.1:10112785-10112804 | MS.gene055768:CDS | 55.0% | |
GTCCTTACTCGTCCTTTGCC+TGG | + | chr2.1:10112138-10112157 | MS.gene055768:CDS | 55.0% | |
TGAGGAAGATAGAAGCCGCG+AGG | + | chr2.1:10113478-10113497 | MS.gene055768:CDS | 55.0% | |
TGGCTGCACAAGAAGCTGAG+AGG | + | chr2.1:10112784-10112803 | MS.gene055768:CDS | 55.0% | |
TGGGAGTCGTGATCTGCAGA+TGG | + | chr2.1:10110440-10110459 | MS.gene055768:CDS | 55.0% | |
TTCTTGTGCAGCCACCTGCT+TGG | - | chr2.1:10112778-10112797 | None:intergenic | 55.0% | |
GCAGTTACTGCTGTGGTGCC+TGG | + | chr2.1:10112892-10112911 | MS.gene055768:intron | 60.0% | |
GGCCAGGCAAAGGACGAGTA+AGG | - | chr2.1:10112143-10112162 | None:intergenic | 60.0% | |
GTAGGTAGCTGGCCAGGCAA+AGG | - | chr2.1:10112153-10112172 | None:intergenic | 60.0% | |
GTTGATGCAGCGCCACCACT+TGG | - | chr2.1:10110105-10110124 | None:intergenic | 60.0% | |
! | TGGTGGCGCTGCATCAACAC+TGG | + | chr2.1:10110107-10110126 | MS.gene055768:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 10110078 | 10113605 | 10110078 | ID=MS.gene055768 |
chr2.1 | mRNA | 10110078 | 10113605 | 10110078 | ID=MS.gene055768.t1;Parent=MS.gene055768 |
chr2.1 | exon | 10110078 | 10110245 | 10110078 | ID=MS.gene055768.t1.exon1;Parent=MS.gene055768.t1 |
chr2.1 | CDS | 10110078 | 10110245 | 10110078 | ID=cds.MS.gene055768.t1;Parent=MS.gene055768.t1 |
chr2.1 | exon | 10110345 | 10110461 | 10110345 | ID=MS.gene055768.t1.exon2;Parent=MS.gene055768.t1 |
chr2.1 | CDS | 10110345 | 10110461 | 10110345 | ID=cds.MS.gene055768.t1;Parent=MS.gene055768.t1 |
chr2.1 | exon | 10112120 | 10112290 | 10112120 | ID=MS.gene055768.t1.exon3;Parent=MS.gene055768.t1 |
chr2.1 | CDS | 10112120 | 10112290 | 10112120 | ID=cds.MS.gene055768.t1;Parent=MS.gene055768.t1 |
chr2.1 | exon | 10112654 | 10112866 | 10112654 | ID=MS.gene055768.t1.exon4;Parent=MS.gene055768.t1 |
chr2.1 | CDS | 10112654 | 10112866 | 10112654 | ID=cds.MS.gene055768.t1;Parent=MS.gene055768.t1 |
chr2.1 | exon | 10113414 | 10113605 | 10113414 | ID=MS.gene055768.t1.exon5;Parent=MS.gene055768.t1 |
chr2.1 | CDS | 10113414 | 10113605 | 10113414 | ID=cds.MS.gene055768.t1;Parent=MS.gene055768.t1 |
Gene Sequence |
Protein sequence |