Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31416.t1 | XP_013465165.1 | 98.6 | 285 | 4 | 0 | 2 | 286 | 3 | 287 | 3.00E-147 | 531.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31416.t1 | O49460 | 86.0 | 285 | 40 | 0 | 2 | 286 | 3 | 287 | 7.5e-131 | 468.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31416.t1 | A0A072VM16 | 98.6 | 285 | 4 | 0 | 2 | 286 | 3 | 287 | 2.2e-147 | 531.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31416.t1 | MTR_2g090760 | 98.596 | 285 | 4 | 0 | 2 | 286 | 3 | 287 | 0.0 | 566 |
MS.gene31416.t1 | MTR_4g078200 | 84.429 | 289 | 42 | 1 | 1 | 286 | 4 | 292 | 3.62e-179 | 495 |
MS.gene31416.t1 | MTR_4g078200 | 89.565 | 230 | 24 | 0 | 57 | 286 | 2 | 231 | 9.55e-150 | 418 |
MS.gene31416.t1 | MTR_3g008250 | 52.143 | 280 | 126 | 4 | 10 | 285 | 3 | 278 | 5.37e-93 | 276 |
MS.gene31416.t1 | MTR_8g046300 | 54.150 | 253 | 113 | 2 | 25 | 274 | 20 | 272 | 5.80e-93 | 276 |
MS.gene31416.t1 | MTR_5g093030 | 32.044 | 181 | 108 | 3 | 3 | 182 | 12 | 178 | 1.02e-25 | 100 |
MS.gene31416.t1 | MTR_6g004320 | 35.075 | 134 | 49 | 1 | 95 | 228 | 1 | 96 | 3.24e-18 | 78.6 |
MS.gene31416.t1 | MTR_5g093040 | 36.842 | 95 | 54 | 1 | 25 | 119 | 18 | 106 | 4.28e-15 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31416.t1 | AT1G03860 | 81.469 | 286 | 52 | 1 | 1 | 285 | 1 | 286 | 5.63e-167 | 464 |
MS.gene31416.t1 | AT1G03860 | 81.469 | 286 | 52 | 1 | 1 | 285 | 1 | 286 | 5.63e-167 | 464 |
MS.gene31416.t1 | AT2G20530 | 81.818 | 286 | 51 | 1 | 1 | 286 | 1 | 285 | 3.07e-165 | 460 |
MS.gene31416.t1 | AT2G20530 | 81.818 | 286 | 51 | 1 | 1 | 286 | 1 | 285 | 3.07e-165 | 460 |
MS.gene31416.t1 | AT4G28510 | 85.965 | 285 | 40 | 0 | 2 | 286 | 3 | 287 | 5.23e-165 | 459 |
MS.gene31416.t1 | AT5G44140 | 76.619 | 278 | 64 | 1 | 1 | 277 | 1 | 278 | 8.43e-154 | 431 |
MS.gene31416.t1 | AT1G03860 | 86.878 | 221 | 29 | 0 | 65 | 285 | 1 | 221 | 2.70e-133 | 376 |
MS.gene31416.t1 | AT3G27280 | 52.206 | 272 | 125 | 2 | 15 | 285 | 12 | 279 | 1.57e-93 | 278 |
MS.gene31416.t1 | AT3G27280 | 52.206 | 272 | 125 | 2 | 15 | 285 | 12 | 279 | 1.57e-93 | 278 |
MS.gene31416.t1 | AT5G40770 | 53.640 | 261 | 120 | 1 | 15 | 274 | 12 | 272 | 5.21e-93 | 276 |
MS.gene31416.t1 | AT5G14300 | 46.502 | 243 | 103 | 2 | 33 | 274 | 22 | 238 | 1.24e-72 | 223 |
Find 81 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACACTTTACAGGTGAAAAT+TGG | 0.119569 | 2.4:+9645127 | MS.gene31416:intron |
TGCATCAACACTGGCGAAAT+TGG | 0.141061 | 2.4:+9643171 | MS.gene31416:CDS |
CATTTGGTTGAGAGTACTTC+TGG | 0.173279 | 2.4:+9643475 | MS.gene31416:CDS |
CTGGCGAAATTGGGAATTAT+TGG | 0.260992 | 2.4:+9643181 | MS.gene31416:CDS |
TTGGGAATTATTGGTGGAAT+TGG | 0.287106 | 2.4:+9643190 | MS.gene31416:CDS |
GCAAAAGATCACCTGCTTCC+AGG | 0.365181 | 2.4:-9646561 | None:intergenic |
TTCTTGTGCAGCCACCTGCT+TGG | 0.376184 | 2.4:-9645794 | None:intergenic |
ATCACAAAATGCGTTCCTTC+AGG | 0.381268 | 2.4:-9643406 | None:intergenic |
CCCTCTCAGTCAGAATCTTC+CGG | 0.382058 | 2.4:-9645690 | None:intergenic |
AAAGTTTCATGTATGATTGA+AGG | 0.395524 | 2.4:-9645235 | None:intergenic |
TAAGTTGGCTGGCATTGTAC+TGG | 0.400052 | 2.4:-9645273 | None:intergenic |
AACAGTCTTTACAACGTTGA+TGG | 0.406724 | 2.4:+9643229 | MS.gene31416:CDS |
CAATGGCTTGTCCGATCAGT+TGG | 0.421036 | 2.4:-9646450 | None:intergenic |
TGGAGAGAATTATAATGAAC+GGG | 0.425726 | 2.4:+9645207 | MS.gene31416:CDS |
ACACTTTACAGGTGAAAATT+GGG | 0.431100 | 2.4:+9645128 | MS.gene31416:intron |
GCATCAACACTGGCGAAATT+GGG | 0.431369 | 2.4:+9643172 | MS.gene31416:CDS |
ATTTGGTTGAGAGTACTTCT+GGG | 0.432938 | 2.4:+9643476 | MS.gene31416:CDS |
GCCAGCTACCTACAGTTTAT+CGG | 0.442274 | 2.4:+9645179 | MS.gene31416:CDS |
TGTTCGTGCACGTCCTCATT+TGG | 0.454482 | 2.4:+9643459 | MS.gene31416:CDS |
GTCCTTACTCGTCCTTTGCC+CGG | 0.458860 | 2.4:+9645157 | MS.gene31416:CDS |
TTCCTCAGTGTGATGAAAGC+TGG | 0.472587 | 2.4:-9646481 | None:intergenic |
TCAATTACTAGTCTGACCTT+TGG | 0.487774 | 2.4:+9645745 | MS.gene31416:CDS |
TTCAGCAAACAAGGTTTACC+TGG | 0.493035 | 2.4:+9646543 | MS.gene31416:CDS |
TGCTGCAATTGAAGCCAAGC+AGG | 0.493081 | 2.4:+9645780 | MS.gene31416:CDS |
GAATCTTCAGCGGATCAACT+TGG | 0.494004 | 2.4:+9646585 | MS.gene31416:CDS |
AAGTGCTGTAATTAGAGCAC+AGG | 0.500292 | 2.4:+9645864 | MS.gene31416:CDS |
GGCCGGGCAAAGGACGAGTA+AGG | 0.504744 | 2.4:-9645159 | None:intergenic |
GCGAAATTGGGAATTATTGG+TGG | 0.507313 | 2.4:+9643184 | MS.gene31416:CDS |
ATCAAGAGCAATGTTGAAGT+TGG | 0.509611 | 2.4:-9645716 | None:intergenic |
TGTGATGAAAGCTGGATTGT+TGG | 0.511259 | 2.4:-9646473 | None:intergenic |
GTTGATGCAGCGCCACCACT+TGG | 0.517803 | 2.4:-9643157 | None:intergenic |
CCTACAGTTTATCGGACCCT+TGG | 0.517966 | 2.4:+9645187 | MS.gene31416:CDS |
AGGCTGTTAGTCGTGAAATC+CGG | 0.519390 | 2.4:+9645671 | MS.gene31416:intron |
AATGGCTTGTCCGATCAGTT+GGG | 0.519729 | 2.4:-9646449 | None:intergenic |
GTTCATTATAATTCTCTCCA+AGG | 0.524825 | 2.4:-9645204 | None:intergenic |
ATCGTGTTTAACCGTCTCGT+TGG | 0.527718 | 2.4:+9643265 | MS.gene31416:CDS |
GTTGTGTAGGTTTATCCTGA+AGG | 0.531470 | 2.4:+9643391 | MS.gene31416:intron |
TATTGCAAATTCAGCAAACA+AGG | 0.537639 | 2.4:+9646534 | MS.gene31416:CDS |
AACAAGGTTTACCTGGAAGC+AGG | 0.540987 | 2.4:+9646550 | MS.gene31416:CDS |
CCTCCCGCTGTGTAATAAGT+TGG | 0.543103 | 2.4:-9645288 | None:intergenic |
TCCGATAAACTGTAGGTAGC+TGG | 0.544929 | 2.4:-9645180 | None:intergenic |
GTAGGTAGCTGGCCGGGCAA+AGG | 0.546160 | 2.4:-9645169 | None:intergenic |
TTGTGATTCCGTGGTTTGAG+AGG | 0.547203 | 2.4:+9643422 | MS.gene31416:CDS |
TTGGAGAGAATTATAATGAA+CGG | 0.549347 | 2.4:+9645206 | MS.gene31416:CDS |
CCGCTGTGTAATAAGTTGGC+TGG | 0.549719 | 2.4:-9645284 | None:intergenic |
ATCACCGGCCTCTCAAACCA+CGG | 0.552231 | 2.4:-9643430 | None:intergenic |
AAGTTGGCTGGCATTGTACT+GGG | 0.555741 | 2.4:-9645272 | None:intergenic |
TTCATTATAATTCTCTCCAA+GGG | 0.556280 | 2.4:-9645203 | None:intergenic |
GTCTTTACAACGTTGATGGA+GGG | 0.558535 | 2.4:+9643233 | MS.gene31416:CDS |
GAAGTACTCTCAACCAAATG+AGG | 0.567361 | 2.4:-9643472 | None:intergenic |
TACTAGTCTGACCTTTGGCA+AGG | 0.569845 | 2.4:+9645750 | MS.gene31416:CDS |
GATTCCGTGGTTTGAGAGGC+CGG | 0.570682 | 2.4:+9643426 | MS.gene31416:CDS |
CAGCCAACTTATTACACAGC+GGG | 0.571868 | 2.4:+9645285 | MS.gene31416:CDS |
GGCTGCACAAGAAGCTGAGA+GGG | 0.572538 | 2.4:+9645804 | MS.gene31416:CDS |
TGGTGGCGCTGCATCAACAC+TGG | 0.572841 | 2.4:+9643162 | MS.gene31416:CDS |
GCTAAAAGTGCCCAACTGAT+CGG | 0.574265 | 2.4:+9646439 | MS.gene31416:CDS |
ATAAACTGTAGGTAGCTGGC+CGG | 0.578623 | 2.4:-9645176 | None:intergenic |
TGAGAGGGCTAAATTTGTTG+TGG | 0.593905 | 2.4:+9645819 | MS.gene31416:CDS |
AGTCTTTACAACGTTGATGG+AGG | 0.595744 | 2.4:+9643232 | MS.gene31416:CDS |
TAAACTGTAGGTAGCTGGCC+GGG | 0.598757 | 2.4:-9645175 | None:intergenic |
CCAAGGGTCCGATAAACTGT+AGG | 0.602094 | 2.4:-9645187 | None:intergenic |
AACGCGAAAGTTCCAAGTGG+TGG | 0.602185 | 2.4:+9643145 | MS.gene31416:CDS |
GAGGAAGATAGAAGCCGCGA+GGG | 0.603991 | 2.4:+9646498 | MS.gene31416:CDS |
TGGGAGTCGTGATCTGCAGA+TGG | 0.609717 | 2.4:+9643495 | MS.gene31416:CDS |
CCGGAAGATTCTGACTGAGA+GGG | 0.615174 | 2.4:+9645690 | MS.gene31416:CDS |
TCCGGAAGATTCTGACTGAG+AGG | 0.615920 | 2.4:+9645689 | MS.gene31416:CDS |
TGTCTTTGACACCAACGAGA+CGG | 0.624230 | 2.4:-9643276 | None:intergenic |
TGCAATTGAAGCCAAGCAGG+TGG | 0.632190 | 2.4:+9645783 | MS.gene31416:CDS |
GAAAGCTGGATTGTTGGCAA+TGG | 0.633552 | 2.4:-9646467 | None:intergenic |
ACATGAAACTTTGAAAGCTG+TGG | 0.633777 | 2.4:+9645246 | MS.gene31416:CDS |
TGGCTGCACAAGAAGCTGAG+AGG | 0.639141 | 2.4:+9645803 | MS.gene31416:CDS |
GCACGAACATCATAGATCAC+CGG | 0.645792 | 2.4:-9643445 | None:intergenic |
GACGGTTAAACACGATAGCA+CGG | 0.646783 | 2.4:-9643258 | None:intergenic |
AGCAGTAAACTCCTTGCCAA+AGG | 0.656274 | 2.4:-9645761 | None:intergenic |
TCTCGTTGGTGTCAAAGACA+AGG | 0.674892 | 2.4:+9643279 | MS.gene31416:CDS |
CCAACTTATTACACAGCGGG+AGG | 0.682391 | 2.4:+9645288 | MS.gene31416:CDS |
TGAGGAAGATAGAAGCCGCG+AGG | 0.696862 | 2.4:+9646497 | MS.gene31416:CDS |
AACATGTGCTATCTCCCTCG+CGG | 0.711001 | 2.4:-9646512 | None:intergenic |
AAGAACGCGAAAGTTCCAAG+TGG | 0.742151 | 2.4:+9643142 | MS.gene31416:CDS |
ATCCAGCTTTCATCACACTG+AGG | 0.780168 | 2.4:+9646479 | MS.gene31416:CDS |
CCAGCCAACTTATTACACAG+CGG | 0.790079 | 2.4:+9645284 | MS.gene31416:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAACATTTCTAAATTTAA+AGG | - | chr2.4:9644244-9644263 | None:intergenic | 10.0% |
!! | TAAACATTTCTAAATTTAAA+GGG | - | chr2.4:9644243-9644262 | None:intergenic | 10.0% |
!!! | AGTTTTAATTAATAATTCAT+AGG | + | chr2.4:9644989-9645008 | MS.gene31416:intron | 10.0% |
!! | GAATATGATATATCAAAAAT+GGG | - | chr2.4:9644354-9644373 | None:intergenic | 15.0% |
!! | GTTAAATGTTTCTTATAAAT+AGG | - | chr2.4:9644540-9644559 | None:intergenic | 15.0% |
!! | TGAATATGATATATCAAAAA+TGG | - | chr2.4:9644355-9644374 | None:intergenic | 15.0% |
!! | TTTGATATATCATATTCAAA+TGG | + | chr2.4:9644357-9644376 | MS.gene31416:intron | 15.0% |
!!! | ATTATGTCTTCTAATATTTT+TGG | + | chr2.4:9644952-9644971 | MS.gene31416:intron | 15.0% |
!!! | TTTATTTTATCTTTAGCTAT+AGG | - | chr2.4:9643613-9643632 | None:intergenic | 15.0% |
!! | AAACATAATGAAACATATAG+AGG | - | chr2.4:9644014-9644033 | None:intergenic | 20.0% |
!! | AAATAATCTAACATAATGAC+AGG | - | chr2.4:9645399-9645418 | None:intergenic | 20.0% |
!! | ACATCCTACAATTTATTTAT+TGG | + | chr2.4:9645536-9645555 | MS.gene31416:intron | 20.0% |
!! | ATATATTTATAAAACTGGAG+AGG | - | chr2.4:9644197-9644216 | None:intergenic | 20.0% |
!! | ATGTTTCTTATAAATAGGAA+AGG | - | chr2.4:9644535-9644554 | None:intergenic | 20.0% |
!! | ATTCATGAAAATTATATCAC+TGG | - | chr2.4:9644039-9644058 | None:intergenic | 20.0% |
!! | ATTTACACATAATACTTTCA+AGG | - | chr2.4:9645473-9645492 | None:intergenic | 20.0% |
!! | CAAACCAATAAATAAATTGT+AGG | - | chr2.4:9645543-9645562 | None:intergenic | 20.0% |
!! | GAGAAAAATCTAAATACTAA+CGG | - | chr2.4:9644433-9644452 | None:intergenic | 20.0% |
!! | TTAATAGATCTATTCTTTGT+AGG | + | chr2.4:9645651-9645670 | MS.gene31416:intron | 20.0% |
!! | TTTGTGAATTGAAATGATAT+GGG | + | chr2.4:9643358-9643377 | MS.gene31416:intron | 20.0% |
!!! | AACTGTATTCAGATTTTAAA+AGG | + | chr2.4:9644074-9644093 | MS.gene31416:intron | 20.0% |
!!! | ATTTTCATGTAGAATACATT+CGG | + | chr2.4:9645956-9645975 | MS.gene31416:intron | 20.0% |
!!! | CGTTTTTACAAAGTTTATAT+TGG | + | chr2.4:9644149-9644168 | MS.gene31416:intron | 20.0% |
!!! | GTCAACTTTTTCTTATAAAT+AGG | + | chr2.4:9644639-9644658 | MS.gene31416:intron | 20.0% |
!!! | TGATTTGAAATAGTTCTTAA+GGG | - | chr2.4:9644721-9644740 | None:intergenic | 20.0% |
!!! | TTTTGTGAATTGAAATGATA+TGG | + | chr2.4:9643357-9643376 | MS.gene31416:intron | 20.0% |
! | AAAGTTTCATGTATGATTGA+AGG | - | chr2.4:9645238-9645257 | None:intergenic | 25.0% |
! | AATCTATAAACTTGAAGTAC+TGG | - | chr2.4:9645048-9645067 | None:intergenic | 25.0% |
! | CATTGCATAAATGATGTATT+TGG | + | chr2.4:9644570-9644589 | MS.gene31416:intron | 25.0% |
! | CTTATGTATAAGTTTGCATA+AGG | + | chr2.4:9643583-9643602 | MS.gene31416:intron | 25.0% |
! | CTTGATTTCGTTGAATTTAT+CGG | + | chr2.4:9643334-9643353 | MS.gene31416:intron | 25.0% |
! | TATCATATTCAAATGGTGTA+AGG | + | chr2.4:9644364-9644383 | MS.gene31416:intron | 25.0% |
! | TATTGATCAACATTGAATGT+TGG | + | chr2.4:9646352-9646371 | MS.gene31416:intron | 25.0% |
! | TCTAAATAAAACTGGATTTC+AGG | - | chr2.4:9643816-9643835 | None:intergenic | 25.0% |
! | TGAAAAAAGCTTATGCAAAA+TGG | + | chr2.4:9643702-9643721 | MS.gene31416:intron | 25.0% |
! | TTCATTATAATTCTCTCCAA+GGG | - | chr2.4:9645206-9645225 | None:intergenic | 25.0% |
! | TTCTTATAAATAGGAAAGGA+GGG | - | chr2.4:9644531-9644550 | None:intergenic | 25.0% |
! | TTGGAGAGAATTATAATGAA+CGG | + | chr2.4:9645206-9645225 | MS.gene31416:CDS | 25.0% |
! | TTTCATAAAACATATGCTAC+CGG | - | chr2.4:9645508-9645527 | None:intergenic | 25.0% |
! | TTTCTTAAACAATGACCTTA+GGG | + | chr2.4:9646258-9646277 | MS.gene31416:intron | 25.0% |
! | TTTCTTATAAATAGGAAAGG+AGG | - | chr2.4:9644532-9644551 | None:intergenic | 25.0% |
!! | ATTCATAATGATTTTCAGAC+AGG | - | chr2.4:9643927-9643946 | None:intergenic | 25.0% |
!! | CTGATTTGAAATAGTTCTTA+AGG | - | chr2.4:9644722-9644741 | None:intergenic | 25.0% |
!! | CTTTTTCTTATAAATAGGAC+CGG | + | chr2.4:9644644-9644663 | MS.gene31416:intron | 25.0% |
!! | GATTTGAAATAGTTCTTAAG+GGG | - | chr2.4:9644720-9644739 | None:intergenic | 25.0% |
!! | TGGTTTGAATTCATTTTAAG+TGG | + | chr2.4:9645556-9645575 | MS.gene31416:intron | 25.0% |
!! | TTATTTTCATAAGTTCTCCA+AGG | - | chr2.4:9643680-9643699 | None:intergenic | 25.0% |
!!! | ATATTTTTGGATGTCAATGT+TGG | + | chr2.4:9644965-9644984 | MS.gene31416:intron | 25.0% |
!!! | GGTTTGAATTCATTTTAAGT+GGG | + | chr2.4:9645557-9645576 | MS.gene31416:intron | 25.0% |
!!! | TCTTTTGATTCCTTAAACAA+TGG | - | chr2.4:9646160-9646179 | None:intergenic | 25.0% |
AAACAACAAAAACATGTACC+AGG | - | chr2.4:9645932-9645951 | None:intergenic | 30.0% | |
AAATCTGGTTGTGTTTAATG+TGG | + | chr2.4:9646097-9646116 | MS.gene31416:intron | 30.0% | |
AATAAGTTGTTCATCCAAAC+AGG | - | chr2.4:9643527-9643546 | None:intergenic | 30.0% | |
AATCTGGTTGTGTTTAATGT+GGG | + | chr2.4:9646098-9646117 | MS.gene31416:intron | 30.0% | |
AATTGACTGAGATGTAAAAC+TGG | - | chr2.4:9646333-9646352 | None:intergenic | 30.0% | |
ACACTTTACAGGTGAAAATT+GGG | + | chr2.4:9645128-9645147 | MS.gene31416:intron | 30.0% | |
ACATTACTTTGTTAACTAGG+GGG | - | chr2.4:9643984-9644003 | None:intergenic | 30.0% | |
AGGACATTACTTTGTTAACT+AGG | - | chr2.4:9643987-9644006 | None:intergenic | 30.0% | |
AGTAACTGCATAAGAATTCA+CGG | - | chr2.4:9645900-9645919 | None:intergenic | 30.0% | |
AGTATGAATGATGCACATAA+CGG | - | chr2.4:9643954-9643973 | None:intergenic | 30.0% | |
ATAAGTTGTTCATCCAAACA+GGG | - | chr2.4:9643526-9643545 | None:intergenic | 30.0% | |
ATACCATCACAAAGAATAGA+GGG | - | chr2.4:9643903-9643922 | None:intergenic | 30.0% | |
ATGAAACATATAGAGGATTG+AGG | - | chr2.4:9644007-9644026 | None:intergenic | 30.0% | |
ATTCAGAGGCTAAACATAAA+AGG | - | chr2.4:9644863-9644882 | None:intergenic | 30.0% | |
ATTGGAGTTTACCTTTGTTA+AGG | + | chr2.4:9644167-9644186 | MS.gene31416:intron | 30.0% | |
CATGCAAGTCTAAATAAAAC+TGG | - | chr2.4:9643824-9643843 | None:intergenic | 30.0% | |
CATTGAGTAACTAATGTACT+TGG | - | chr2.4:9644609-9644628 | None:intergenic | 30.0% | |
GACATTACTTTGTTAACTAG+GGG | - | chr2.4:9643985-9644004 | None:intergenic | 30.0% | |
GGACATTACTTTGTTAACTA+GGG | - | chr2.4:9643986-9644005 | None:intergenic | 30.0% | |
GTCATTGTTTAAGAAACTCA+AGG | - | chr2.4:9646254-9646273 | None:intergenic | 30.0% | |
GTTCATTATAATTCTCTCCA+AGG | - | chr2.4:9645207-9645226 | None:intergenic | 30.0% | |
GTTTCTTAAACAATGACCTT+AGG | + | chr2.4:9646257-9646276 | MS.gene31416:intron | 30.0% | |
TATACCATCACAAAGAATAG+AGG | - | chr2.4:9643904-9643923 | None:intergenic | 30.0% | |
TATTGCAAATTCAGCAAACA+AGG | + | chr2.4:9646534-9646553 | MS.gene31416:CDS | 30.0% | |
TGGAGAGAATTATAATGAAC+GGG | + | chr2.4:9645207-9645226 | MS.gene31416:CDS | 30.0% | |
TGTAAATTCTTGTCATTACC+CGG | + | chr2.4:9645486-9645505 | MS.gene31416:intron | 30.0% | |
TTCAGAGGCTAAACATAAAA+GGG | - | chr2.4:9644862-9644881 | None:intergenic | 30.0% | |
TTCATAAAACATATGCTACC+GGG | - | chr2.4:9645507-9645526 | None:intergenic | 30.0% | |
TTGATGTGTAAAAAAGGTCA+GGG | - | chr2.4:9646410-9646429 | None:intergenic | 30.0% | |
! | TCAACAATGATTTTGCAATC+AGG | - | chr2.4:9644283-9644302 | None:intergenic | 30.0% |
!! | AAACTTGAAGTACTGGAAAT+TGG | - | chr2.4:9645041-9645060 | None:intergenic | 30.0% |
!! | AAAGACAAGGTCATTTTCTA+GGG | + | chr2.4:9643292-9643311 | MS.gene31416:intron | 30.0% |
!! | ATTTTTCAAACCATGTTGCT+TGG | + | chr2.4:9645351-9645370 | MS.gene31416:intron | 30.0% |
!! | TTTTTCAAACCATGTTGCTT+GGG | + | chr2.4:9645352-9645371 | MS.gene31416:intron | 30.0% |
!!! | ACCTTTTTTACACATCAACA+GGG | + | chr2.4:9646412-9646431 | MS.gene31416:intron | 30.0% |
!!! | TTCCACATGAATTTGTTTTG+AGG | + | chr2.4:9644108-9644127 | MS.gene31416:intron | 30.0% |
AAAGGGAAATTCAGACTACA+AGG | - | chr2.4:9644845-9644864 | None:intergenic | 35.0% | |
AAATACTAACAAGTGCCCTT+AGG | + | chr2.4:9646134-9646153 | MS.gene31416:intron | 35.0% | |
AACAGTCTTTACAACGTTGA+TGG | + | chr2.4:9643229-9643248 | MS.gene31416:CDS | 35.0% | |
AACTCAAGGAAACTTTGTCT+AGG | - | chr2.4:9646240-9646259 | None:intergenic | 35.0% | |
ACATTTCAATCTTGTGATCC+TGG | + | chr2.4:9644464-9644483 | MS.gene31416:intron | 35.0% | |
ACCCTGTTGATGTGTAAAAA+AGG | - | chr2.4:9646416-9646435 | None:intergenic | 35.0% | |
ACTGTCTTTGTTCACAAATC+TGG | + | chr2.4:9646082-9646101 | MS.gene31416:intron | 35.0% | |
AGGGAGTAGACAATAATCAT+CGG | - | chr2.4:9644512-9644531 | None:intergenic | 35.0% | |
ATCAAGAGCAATGTTGAAGT+TGG | - | chr2.4:9645719-9645738 | None:intergenic | 35.0% | |
ATTCCTTAAACAATGGCCTA+AGG | - | chr2.4:9646153-9646172 | None:intergenic | 35.0% | |
CAACAATTAAATACTCCCTC+CGG | - | chr2.4:9644666-9644685 | None:intergenic | 35.0% | |
CACACTTTACAGGTGAAAAT+TGG | + | chr2.4:9645127-9645146 | MS.gene31416:intron | 35.0% | |
CATGATGTTGGATACATCTT+TGG | + | chr2.4:9646047-9646066 | MS.gene31416:intron | 35.0% | |
CATTACTTTGTTAACTAGGG+GGG | - | chr2.4:9643983-9644002 | None:intergenic | 35.0% | |
CTCCTCAAAACAAATTCATG+TGG | - | chr2.4:9644113-9644132 | None:intergenic | 35.0% | |
GTCTGTGTGGTGATTTAAAA+TGG | + | chr2.4:9644775-9644794 | MS.gene31416:intron | 35.0% | |
GTTATGTGCATCATTCATAC+TGG | + | chr2.4:9643953-9643972 | MS.gene31416:intron | 35.0% | |
GTTGATGTGTAAAAAAGGTC+AGG | - | chr2.4:9646411-9646430 | None:intergenic | 35.0% | |
TAGACTTGCATGTCATCATT+AGG | + | chr2.4:9643832-9643851 | MS.gene31416:intron | 35.0% | |
TATAGTTAAGTCCAAATGCC+AGG | - | chr2.4:9644485-9644504 | None:intergenic | 35.0% | |
TCATAGGTAGCAAAGATGTT+TGG | + | chr2.4:9645005-9645024 | MS.gene31416:intron | 35.0% | |
TGAGTATGATGCAAATTCAG+AGG | - | chr2.4:9644877-9644896 | None:intergenic | 35.0% | |
TGATGTGTAAAAAAGGTCAG+GGG | - | chr2.4:9646409-9646428 | None:intergenic | 35.0% | |
TGTTCTCTTGATCATGATGT+TGG | + | chr2.4:9646035-9646054 | MS.gene31416:intron | 35.0% | |
TTAAATCACCACACAGACAA+CGG | - | chr2.4:9644773-9644792 | None:intergenic | 35.0% | |
TTCCTTAAACAATGGCCTAA+GGG | - | chr2.4:9646152-9646171 | None:intergenic | 35.0% | |
TTCTTATAAATAGGACCGGA+GGG | + | chr2.4:9644648-9644667 | MS.gene31416:intron | 35.0% | |
TTGAGCTAATCTCTTGACAT+AGG | - | chr2.4:9643770-9643789 | None:intergenic | 35.0% | |
TTGGGAATTATTGGTGGAAT+TGG | + | chr2.4:9643190-9643209 | MS.gene31416:CDS | 35.0% | |
TTTCCCTCTATTCTTTGTGA+TGG | + | chr2.4:9643897-9643916 | MS.gene31416:intron | 35.0% | |
TTTCTTATAAATAGGACCGG+AGG | + | chr2.4:9644647-9644666 | MS.gene31416:intron | 35.0% | |
! | ACATGAAACTTTGAAAGCTG+TGG | + | chr2.4:9645246-9645265 | MS.gene31416:CDS | 35.0% |
! | ATCTTTTGCTGAATCTTCAG+CGG | + | chr2.4:9646575-9646594 | MS.gene31416:CDS | 35.0% |
! | GAAGTATTTGAACAACTGCT+AGG | + | chr2.4:9644301-9644320 | MS.gene31416:intron | 35.0% |
! | TCAATTACTAGTCTGACCTT+TGG | + | chr2.4:9645745-9645764 | MS.gene31416:CDS | 35.0% |
! | TTTTGATGCCGTTAAACATC+TGG | + | chr2.4:9644812-9644831 | MS.gene31416:intron | 35.0% |
!! | AGATAAGACAGTGCTAGTTT+TGG | - | chr2.4:9646012-9646031 | None:intergenic | 35.0% |
!! | ATTTGGTTGAGAGTACTTCT+GGG | + | chr2.4:9643476-9643495 | MS.gene31416:CDS | 35.0% |
!! | CAAAGACAAGGTCATTTTCT+AGG | + | chr2.4:9643291-9643310 | MS.gene31416:intron | 35.0% |
!!! | AAGGTCATTTTCTAGGGTTT+AGG | + | chr2.4:9643298-9643317 | MS.gene31416:intron | 35.0% |
!!! | AGGTCATTTTCTAGGGTTTA+GGG | + | chr2.4:9643299-9643318 | MS.gene31416:intron | 35.0% |
!!! | ATAAGACAGTGCTAGTTTTG+GGG | - | chr2.4:9646010-9646029 | None:intergenic | 35.0% |
!!! | GACCTTTTTTACACATCAAC+AGG | + | chr2.4:9646411-9646430 | MS.gene31416:intron | 35.0% |
!!! | GATAAGACAGTGCTAGTTTT+GGG | - | chr2.4:9646011-9646030 | None:intergenic | 35.0% |
AACTGGATTTCAGGCATGTT+TGG | - | chr2.4:9643807-9643826 | None:intergenic | 40.0% | |
AATCTTGTGATCCTGGCATT+TGG | + | chr2.4:9644471-9644490 | MS.gene31416:intron | 40.0% | |
ACCTGTAAAGTGTGTACATG+CGG | - | chr2.4:9645121-9645140 | None:intergenic | 40.0% | |
ATCAAACAACCCTGTGAAAG+TGG | - | chr2.4:9644927-9644946 | None:intergenic | 40.0% | |
ATCACAAAATGCGTTCCTTC+AGG | - | chr2.4:9643409-9643428 | None:intergenic | 40.0% | |
ATGTGTAAAAAAGGTCAGGG+GGG | - | chr2.4:9646407-9646426 | None:intergenic | 40.0% | |
CTGGCGAAATTGGGAATTAT+TGG | + | chr2.4:9643181-9643200 | MS.gene31416:CDS | 40.0% | |
GATGTGTAAAAAAGGTCAGG+GGG | - | chr2.4:9646408-9646427 | None:intergenic | 40.0% | |
GATTTCAGGCATGTTTGGAT+TGG | - | chr2.4:9643802-9643821 | None:intergenic | 40.0% | |
GCCAATCACCAGATGTTTAA+CGG | - | chr2.4:9644823-9644842 | None:intergenic | 40.0% | |
GCGAAATTGGGAATTATTGG+TGG | + | chr2.4:9643184-9643203 | MS.gene31416:CDS | 40.0% | |
GTATTTGAACAACTGCTAGG+TGG | + | chr2.4:9644304-9644323 | MS.gene31416:intron | 40.0% | |
GTTGTGTAGGTTTATCCTGA+AGG | + | chr2.4:9643391-9643410 | MS.gene31416:intron | 40.0% | |
TCAAACAACCCTGTGAAAGT+GGG | - | chr2.4:9644926-9644945 | None:intergenic | 40.0% | |
TGTGATGAAAGCTGGATTGT+TGG | - | chr2.4:9646476-9646495 | None:intergenic | 40.0% | |
TTCAGCAAACAAGGTTTACC+TGG | + | chr2.4:9646543-9646562 | MS.gene31416:CDS | 40.0% | |
TTCTTATGCAGTTACTGCTG+TGG | + | chr2.4:9645904-9645923 | MS.gene31416:intron | 40.0% | |
! | AAGTGCTGTAATTAGAGCAC+AGG | + | chr2.4:9645864-9645883 | MS.gene31416:CDS | 40.0% |
! | AGTCTTTACAACGTTGATGG+AGG | + | chr2.4:9643232-9643251 | MS.gene31416:CDS | 40.0% |
! | CTCTTGACATAGGTATTGTG+AGG | - | chr2.4:9643760-9643779 | None:intergenic | 40.0% |
! | GAAGTACTCTCAACCAAATG+AGG | - | chr2.4:9643475-9643494 | None:intergenic | 40.0% |
! | GTCTTTACAACGTTGATGGA+GGG | + | chr2.4:9643233-9643252 | MS.gene31416:CDS | 40.0% |
! | TTTTACACATCAACAGGGTG+AGG | + | chr2.4:9646417-9646436 | MS.gene31416:intron | 40.0% |
!! | CATTTGGTTGAGAGTACTTC+TGG | + | chr2.4:9643475-9643494 | MS.gene31416:CDS | 40.0% |
!! | GCTGTTTTCATAAGCTACCT+TGG | + | chr2.4:9643660-9643679 | MS.gene31416:intron | 40.0% |
!! | TGAGAGGGCTAAATTTGTTG+TGG | + | chr2.4:9645819-9645838 | MS.gene31416:CDS | 40.0% |
!!! | GGTCATTTTCTAGGGTTTAG+GGG | + | chr2.4:9643300-9643319 | MS.gene31416:intron | 40.0% |
AACAAGGTTTACCTGGAAGC+AGG | + | chr2.4:9646550-9646569 | MS.gene31416:CDS | 45.0% | |
AACACGTCATGCTAACCCTA+AGG | - | chr2.4:9646276-9646295 | None:intergenic | 45.0% | |
AAGAACGCGAAAGTTCCAAG+TGG | + | chr2.4:9643142-9643161 | MS.gene31416:CDS | 45.0% | |
AAGTTGGCTGGCATTGTACT+GGG | - | chr2.4:9645275-9645294 | None:intergenic | 45.0% | |
ACCGCATGTACACACTTTAC+AGG | + | chr2.4:9645117-9645136 | MS.gene31416:intron | 45.0% | |
AGCAGTAAACTCCTTGCCAA+AGG | - | chr2.4:9645764-9645783 | None:intergenic | 45.0% | |
AGGCTGTTAGTCGTGAAATC+CGG | + | chr2.4:9645671-9645690 | MS.gene31416:intron | 45.0% | |
ATAAACTGTAGGTAGCTGGC+CGG | - | chr2.4:9645179-9645198 | None:intergenic | 45.0% | |
ATCCAGCTTTCATCACACTG+AGG | + | chr2.4:9646479-9646498 | MS.gene31416:CDS | 45.0% | |
ATCGTGTTTAACCGTCTCGT+TGG | + | chr2.4:9643265-9643284 | MS.gene31416:CDS | 45.0% | |
CAGCCAACTTATTACACAGC+GGG | + | chr2.4:9645285-9645304 | MS.gene31416:CDS | 45.0% | |
CCAGCCAACTTATTACACAG+CGG | + | chr2.4:9645284-9645303 | MS.gene31416:CDS | 45.0% | |
GAAAGCTGGATTGTTGGCAA+TGG | - | chr2.4:9646470-9646489 | None:intergenic | 45.0% | |
GAATCTTCAGCGGATCAACT+TGG | + | chr2.4:9646585-9646604 | MS.gene31416:CDS | 45.0% | |
GACGGTTAAACACGATAGCA+CGG | - | chr2.4:9643261-9643280 | None:intergenic | 45.0% | |
GATCATTTCCGTTGTCTGTG+TGG | + | chr2.4:9644762-9644781 | MS.gene31416:intron | 45.0% | |
GCACGAACATCATAGATCAC+CGG | - | chr2.4:9643448-9643467 | None:intergenic | 45.0% | |
GCATCAACACTGGCGAAATT+GGG | + | chr2.4:9643172-9643191 | MS.gene31416:CDS | 45.0% | |
GCCAGCTACCTACAGTTTAT+CGG | + | chr2.4:9645179-9645198 | MS.gene31416:CDS | 45.0% | |
GCCGTTAAACATCTGGTGAT+TGG | + | chr2.4:9644819-9644838 | MS.gene31416:intron | 45.0% | |
GGAGAGGCAATCCTTAACAA+AGG | - | chr2.4:9644181-9644200 | None:intergenic | 45.0% | |
TACTTTGTTAACTAGGGGGG+TGG | - | chr2.4:9643980-9643999 | None:intergenic | 45.0% | |
TCCGATAAACTGTAGGTAGC+TGG | - | chr2.4:9645183-9645202 | None:intergenic | 45.0% | |
TCCTTTCTCCCACTTTCACA+GGG | + | chr2.4:9644915-9644934 | MS.gene31416:intron | 45.0% | |
TGCATCAACACTGGCGAAAT+TGG | + | chr2.4:9643171-9643190 | MS.gene31416:CDS | 45.0% | |
TGCCCTTAGGCCATTGTTTA+AGG | + | chr2.4:9646147-9646166 | MS.gene31416:intron | 45.0% | |
TGTCTTTGACACCAACGAGA+CGG | - | chr2.4:9643279-9643298 | None:intergenic | 45.0% | |
TTCCTCAGTGTGATGAAAGC+TGG | - | chr2.4:9646484-9646503 | None:intergenic | 45.0% | |
TTGTGATTCCGTGGTTTGAG+AGG | + | chr2.4:9643422-9643441 | MS.gene31416:CDS | 45.0% | |
! | AATGGCTTGTCCGATCAGTT+GGG | - | chr2.4:9646452-9646471 | None:intergenic | 45.0% |
! | GAACGCATTTTGTGATTCCG+TGG | + | chr2.4:9643413-9643432 | MS.gene31416:CDS | 45.0% |
! | TAAGTTGGCTGGCATTGTAC+TGG | - | chr2.4:9645276-9645295 | None:intergenic | 45.0% |
! | TACTAGTCTGACCTTTGGCA+AGG | + | chr2.4:9645750-9645769 | MS.gene31416:CDS | 45.0% |
!! | GCTAAAAGTGCCCAACTGAT+CGG | + | chr2.4:9646439-9646458 | MS.gene31416:CDS | 45.0% |
!! | GGGTGTGTTGTTTGTTGTGT+AGG | + | chr2.4:9643378-9643397 | MS.gene31416:intron | 45.0% |
!! | TCTCGTTGGTGTCAAAGACA+AGG | + | chr2.4:9643279-9643298 | MS.gene31416:CDS | 45.0% |
!! | TTTATATATATTTATAAAAC+TGG | - | chr2.4:9644202-9644221 | None:intergenic | 5.0% |
AACATGTGCTATCTCCCTCG+CGG | - | chr2.4:9646515-9646534 | None:intergenic | 50.0% | |
AACGCGAAAGTTCCAAGTGG+TGG | + | chr2.4:9643145-9643164 | MS.gene31416:CDS | 50.0% | |
ACCCTGTGAAAGTGGGAGAA+AGG | - | chr2.4:9644919-9644938 | None:intergenic | 50.0% | |
CCAACTTATTACACAGCGGG+AGG | + | chr2.4:9645288-9645307 | MS.gene31416:CDS | 50.0% | |
CCAAGGGTCCGATAAACTGT+AGG | - | chr2.4:9645190-9645209 | None:intergenic | 50.0% | |
CCCTCTCAGTCAGAATCTTC+CGG | - | chr2.4:9645693-9645712 | None:intergenic | 50.0% | |
CCGGAAGATTCTGACTGAGA+GGG | + | chr2.4:9645690-9645709 | MS.gene31416:CDS | 50.0% | |
CCTACAGTTTATCGGACCCT+TGG | + | chr2.4:9645187-9645206 | MS.gene31416:CDS | 50.0% | |
CCTCCCGCTGTGTAATAAGT+TGG | - | chr2.4:9645291-9645310 | None:intergenic | 50.0% | |
GATACCTCACCCAAGCAACA+TGG | - | chr2.4:9645364-9645383 | None:intergenic | 50.0% | |
GCAAAAGATCACCTGCTTCC+AGG | - | chr2.4:9646564-9646583 | None:intergenic | 50.0% | |
GCAGATGGTAAGTCCCTGTT+TGG | + | chr2.4:9643510-9643529 | MS.gene31416:intron | 50.0% | |
GTCCTTTCTCCCACTTTCAC+AGG | + | chr2.4:9644914-9644933 | MS.gene31416:intron | 50.0% | |
TAAACTGTAGGTAGCTGGCC+GGG | - | chr2.4:9645178-9645197 | None:intergenic | 50.0% | |
TCCGGAAGATTCTGACTGAG+AGG | + | chr2.4:9645689-9645708 | MS.gene31416:CDS | 50.0% | |
TGCAATTGAAGCCAAGCAGG+TGG | + | chr2.4:9645783-9645802 | MS.gene31416:CDS | 50.0% | |
TGCTGCAATTGAAGCCAAGC+AGG | + | chr2.4:9645780-9645799 | MS.gene31416:CDS | 50.0% | |
TGTTCGTGCACGTCCTCATT+TGG | + | chr2.4:9643459-9643478 | MS.gene31416:CDS | 50.0% | |
! | CAAACCATGTTGCTTGGGTG+AGG | + | chr2.4:9645357-9645376 | MS.gene31416:intron | 50.0% |
! | CAATGGCTTGTCCGATCAGT+TGG | - | chr2.4:9646453-9646472 | None:intergenic | 50.0% |
! | CCGCTGTGTAATAAGTTGGC+TGG | - | chr2.4:9645287-9645306 | None:intergenic | 50.0% |
ATCACCGGCCTCTCAAACCA+CGG | - | chr2.4:9643433-9643452 | None:intergenic | 55.0% | |
GAGGAAGATAGAAGCCGCGA+GGG | + | chr2.4:9646498-9646517 | MS.gene31416:CDS | 55.0% | |
GATTCCGTGGTTTGAGAGGC+CGG | + | chr2.4:9643426-9643445 | MS.gene31416:CDS | 55.0% | |
GGCTGCACAAGAAGCTGAGA+GGG | + | chr2.4:9645804-9645823 | MS.gene31416:CDS | 55.0% | |
GTCCTTACTCGTCCTTTGCC+CGG | + | chr2.4:9645157-9645176 | MS.gene31416:CDS | 55.0% | |
TGAGGAAGATAGAAGCCGCG+AGG | + | chr2.4:9646497-9646516 | MS.gene31416:CDS | 55.0% | |
TGGCTGCACAAGAAGCTGAG+AGG | + | chr2.4:9645803-9645822 | MS.gene31416:CDS | 55.0% | |
TGGGAGTCGTGATCTGCAGA+TGG | + | chr2.4:9643495-9643514 | MS.gene31416:CDS | 55.0% | |
TTCTTGTGCAGCCACCTGCT+TGG | - | chr2.4:9645797-9645816 | None:intergenic | 55.0% | |
GCAGTTACTGCTGTGGTGCC+TGG | + | chr2.4:9645911-9645930 | MS.gene31416:intron | 60.0% | |
GTTGATGCAGCGCCACCACT+TGG | - | chr2.4:9643160-9643179 | None:intergenic | 60.0% | |
! | TGGTGGCGCTGCATCAACAC+TGG | + | chr2.4:9643162-9643181 | MS.gene31416:CDS | 60.0% |
GGCCGGGCAAAGGACGAGTA+AGG | - | chr2.4:9645162-9645181 | None:intergenic | 65.0% | |
GTAGGTAGCTGGCCGGGCAA+AGG | - | chr2.4:9645172-9645191 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 9643133 | 9646624 | 9643133 | ID=MS.gene31416 |
chr2.4 | mRNA | 9643133 | 9646624 | 9643133 | ID=MS.gene31416.t1;Parent=MS.gene31416 |
chr2.4 | exon | 9643133 | 9643300 | 9643133 | ID=MS.gene31416.t1.exon1;Parent=MS.gene31416.t1 |
chr2.4 | CDS | 9643133 | 9643300 | 9643133 | ID=cds.MS.gene31416.t1;Parent=MS.gene31416.t1 |
chr2.4 | exon | 9643400 | 9643516 | 9643400 | ID=MS.gene31416.t1.exon2;Parent=MS.gene31416.t1 |
chr2.4 | CDS | 9643400 | 9643516 | 9643400 | ID=cds.MS.gene31416.t1;Parent=MS.gene31416.t1 |
chr2.4 | exon | 9645139 | 9645309 | 9645139 | ID=MS.gene31416.t1.exon3;Parent=MS.gene31416.t1 |
chr2.4 | CDS | 9645139 | 9645309 | 9645139 | ID=cds.MS.gene31416.t1;Parent=MS.gene31416.t1 |
chr2.4 | exon | 9645673 | 9645885 | 9645673 | ID=MS.gene31416.t1.exon4;Parent=MS.gene31416.t1 |
chr2.4 | CDS | 9645673 | 9645885 | 9645673 | ID=cds.MS.gene31416.t1;Parent=MS.gene31416.t1 |
chr2.4 | exon | 9646433 | 9646624 | 9646433 | ID=MS.gene31416.t1.exon5;Parent=MS.gene31416.t1 |
chr2.4 | CDS | 9646433 | 9646624 | 9646433 | ID=cds.MS.gene31416.t1;Parent=MS.gene31416.t1 |
Gene Sequence |
Protein sequence |