Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043467.t1 | XP_013465165.1 | 99.3 | 285 | 2 | 0 | 2 | 286 | 3 | 287 | 1.60E-148 | 535.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043467.t1 | O49460 | 86.7 | 285 | 38 | 0 | 2 | 286 | 3 | 287 | 4.0e-132 | 472.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043467.t1 | A0A072VM16 | 99.3 | 285 | 2 | 0 | 2 | 286 | 3 | 287 | 1.2e-148 | 535.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043467.t1 | MTR_2g090760 | 99.298 | 285 | 2 | 0 | 2 | 286 | 3 | 287 | 0.0 | 571 |
MS.gene043467.t1 | MTR_4g078200 | 84.775 | 289 | 41 | 1 | 1 | 286 | 4 | 292 | 2.19e-179 | 496 |
MS.gene043467.t1 | MTR_4g078200 | 89.565 | 230 | 24 | 0 | 57 | 286 | 2 | 231 | 1.16e-149 | 418 |
MS.gene043467.t1 | MTR_3g008250 | 51.786 | 280 | 127 | 4 | 10 | 285 | 3 | 278 | 2.88e-92 | 275 |
MS.gene043467.t1 | MTR_8g046300 | 53.755 | 253 | 114 | 2 | 25 | 274 | 20 | 272 | 3.28e-92 | 275 |
MS.gene043467.t1 | MTR_5g093030 | 32.044 | 181 | 108 | 3 | 3 | 182 | 12 | 178 | 5.36e-26 | 101 |
MS.gene043467.t1 | MTR_6g004320 | 35.075 | 134 | 49 | 1 | 95 | 228 | 1 | 96 | 2.83e-18 | 79.0 |
MS.gene043467.t1 | MTR_5g093040 | 36.842 | 95 | 54 | 1 | 25 | 119 | 18 | 106 | 4.06e-15 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043467.t1 | AT4G28510 | 86.667 | 285 | 38 | 0 | 2 | 286 | 3 | 287 | 3.42e-167 | 465 |
MS.gene043467.t1 | AT1G03860 | 81.119 | 286 | 53 | 1 | 1 | 285 | 1 | 286 | 6.62e-166 | 461 |
MS.gene043467.t1 | AT1G03860 | 81.119 | 286 | 53 | 1 | 1 | 285 | 1 | 286 | 6.62e-166 | 461 |
MS.gene043467.t1 | AT2G20530 | 81.469 | 286 | 52 | 1 | 1 | 286 | 1 | 285 | 9.50e-165 | 459 |
MS.gene043467.t1 | AT2G20530 | 81.469 | 286 | 52 | 1 | 1 | 286 | 1 | 285 | 9.50e-165 | 459 |
MS.gene043467.t1 | AT5G44140 | 76.259 | 278 | 65 | 1 | 1 | 277 | 1 | 278 | 5.25e-153 | 429 |
MS.gene043467.t1 | AT1G03860 | 86.878 | 221 | 29 | 0 | 65 | 285 | 1 | 221 | 2.50e-133 | 377 |
MS.gene043467.t1 | AT3G27280 | 51.838 | 272 | 126 | 2 | 15 | 285 | 12 | 279 | 6.49e-93 | 276 |
MS.gene043467.t1 | AT3G27280 | 51.838 | 272 | 126 | 2 | 15 | 285 | 12 | 279 | 6.49e-93 | 276 |
MS.gene043467.t1 | AT5G40770 | 53.257 | 261 | 121 | 1 | 15 | 274 | 12 | 272 | 2.89e-92 | 275 |
MS.gene043467.t1 | AT5G14300 | 45.490 | 255 | 107 | 4 | 33 | 285 | 22 | 246 | 2.00e-72 | 223 |
Find 80 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACACTTTACAGGTGAAAAT+TGG | 0.119569 | 2.2:+8599555 | MS.gene043467:intron |
TGCATCAACACTGGCGAAAT+TGG | 0.141061 | 2.2:+8597563 | MS.gene043467:CDS |
CATTTGGTTGAGAGTACTTC+TGG | 0.173279 | 2.2:+8597867 | MS.gene043467:CDS |
CTGGCGAAATTGGGAATTAT+TGG | 0.260992 | 2.2:+8597573 | MS.gene043467:CDS |
TTGGGAATTATTGGTGGAAT+TGG | 0.287106 | 2.2:+8597582 | MS.gene043467:CDS |
AAAGTTTCATGTATGATAGA+AGG | 0.356950 | 2.2:-8599663 | None:intergenic |
GCAAAAGATCACCTGCTTCC+AGG | 0.365181 | 2.2:-8600992 | None:intergenic |
TTCTTGTGCAGCCACCTGCT+TGG | 0.376184 | 2.2:-8600222 | None:intergenic |
ATCACAAAATGCGTTCCTTC+AGG | 0.381268 | 2.2:-8597798 | None:intergenic |
CCCTCTCAGTCAGAATCTTC+CGG | 0.382058 | 2.2:-8600118 | None:intergenic |
TAAGTTGGCTGGCATTGTAC+TGG | 0.400052 | 2.2:-8599701 | None:intergenic |
GTCAGCTACCTACAGTTTAT+CGG | 0.413419 | 2.2:+8599607 | MS.gene043467:CDS |
CAATGGCTTGTCCGATCAGT+TGG | 0.421036 | 2.2:-8600881 | None:intergenic |
TGGAGAGAATTATAATGAAC+GGG | 0.425726 | 2.2:+8599635 | MS.gene043467:CDS |
ACACTTTACAGGTGAAAATT+GGG | 0.431100 | 2.2:+8599556 | MS.gene043467:intron |
GCATCAACACTGGCGAAATT+GGG | 0.431369 | 2.2:+8597564 | MS.gene043467:CDS |
ATTTGGTTGAGAGTACTTCT+GGG | 0.432938 | 2.2:+8597868 | MS.gene043467:CDS |
GTCCTTACTCGTCCTTTGCC+CGG | 0.436971 | 2.2:+8599585 | MS.gene043467:CDS |
TGTTCGTGCACGTCCTCATT+TGG | 0.454482 | 2.2:+8597851 | MS.gene043467:CDS |
TTCCTCAGTGTGATGAAAGC+TGG | 0.472587 | 2.2:-8600912 | None:intergenic |
TCAATTACTAGTCTGACCTT+TGG | 0.487774 | 2.2:+8600173 | MS.gene043467:CDS |
TTCAGCAAACAAGGTTTACC+TGG | 0.493035 | 2.2:+8600974 | MS.gene043467:CDS |
TGCTGCAATTGAAGCCAAGC+AGG | 0.493081 | 2.2:+8600208 | MS.gene043467:CDS |
AACAGTCTTTACAATGTTGA+GGG | 0.493383 | 2.2:+8597621 | MS.gene043467:CDS |
GAATCTTCAGGGGATCAACT+TGG | 0.495668 | 2.2:+8601016 | MS.gene043467:CDS |
AAGTGCTGTAATTAGAGCAC+AGG | 0.500292 | 2.2:+8600292 | MS.gene043467:CDS |
GCGAAATTGGGAATTATTGG+TGG | 0.507313 | 2.2:+8597576 | MS.gene043467:CDS |
ATCAAGAGCAATGTTGAAGT+TGG | 0.509611 | 2.2:-8600144 | None:intergenic |
TGTGATGAAAGCTGGATTGT+TGG | 0.511259 | 2.2:-8600904 | None:intergenic |
GTTGATGCAGCGCCACCACT+TGG | 0.517803 | 2.2:-8597549 | None:intergenic |
CCTACAGTTTATCGGACCCT+TGG | 0.517966 | 2.2:+8599615 | MS.gene043467:CDS |
AGGCTGTTAGTCGTGAAATC+CGG | 0.519390 | 2.2:+8600099 | MS.gene043467:intron |
AATGGCTTGTCCGATCAGTT+GGG | 0.519729 | 2.2:-8600880 | None:intergenic |
TAACAGTCTTTACAATGTTG+AGG | 0.522899 | 2.2:+8597620 | MS.gene043467:CDS |
GTTCATTATAATTCTCTCCA+AGG | 0.524825 | 2.2:-8599632 | None:intergenic |
ATCGTGTTTAACCGTCTCGT+TGG | 0.527718 | 2.2:+8597657 | MS.gene043467:CDS |
GTTGTGTAGGTTTATCCTGA+AGG | 0.531470 | 2.2:+8597783 | MS.gene043467:intron |
TATTGCAAATTCAGCAAACA+AGG | 0.537639 | 2.2:+8600965 | MS.gene043467:CDS |
GACCGGGCAAAGGACGAGTA+AGG | 0.537984 | 2.2:-8599587 | None:intergenic |
AACAAGGTTTACCTGGAAGC+AGG | 0.540987 | 2.2:+8600981 | MS.gene043467:CDS |
CCTCCCGCTGTGTAATAAGT+TGG | 0.543103 | 2.2:-8599716 | None:intergenic |
TTGTGATTCCGTGGTTTGAG+AGG | 0.547203 | 2.2:+8597814 | MS.gene043467:CDS |
TTGGAGAGAATTATAATGAA+CGG | 0.549347 | 2.2:+8599634 | MS.gene043467:CDS |
CCGCTGTGTAATAAGTTGGC+TGG | 0.549719 | 2.2:-8599712 | None:intergenic |
ATCACCGGCCTCTCAAACCA+CGG | 0.552231 | 2.2:-8597822 | None:intergenic |
AAGTTGGCTGGCATTGTACT+GGG | 0.555741 | 2.2:-8599700 | None:intergenic |
TTCATTATAATTCTCTCCAA+GGG | 0.556280 | 2.2:-8599631 | None:intergenic |
GAAGTACTCTCAACCAAATG+AGG | 0.567361 | 2.2:-8597864 | None:intergenic |
TACTAGTCTGACCTTTGGCA+AGG | 0.569845 | 2.2:+8600178 | MS.gene043467:CDS |
GATTCCGTGGTTTGAGAGGC+CGG | 0.570682 | 2.2:+8597818 | MS.gene043467:CDS |
CAGCCAACTTATTACACAGC+GGG | 0.571868 | 2.2:+8599713 | MS.gene043467:CDS |
GGCTGCACAAGAAGCTGAGA+GGG | 0.572538 | 2.2:+8600232 | MS.gene043467:CDS |
TGGTGGCGCTGCATCAACAC+TGG | 0.572841 | 2.2:+8597554 | MS.gene043467:CDS |
GCTAAAAGTGCCCAACTGAT+CGG | 0.574265 | 2.2:+8600870 | MS.gene043467:CDS |
GTAGGTAGCTGACCGGGCAA+AGG | 0.587280 | 2.2:-8599597 | None:intergenic |
ATAAACTGTAGGTAGCTGAC+CGG | 0.592225 | 2.2:-8599604 | None:intergenic |
TGAGAGGGCTAAATTTGTTG+TGG | 0.593905 | 2.2:+8600247 | MS.gene043467:CDS |
CCAAGGGTCCGATAAACTGT+AGG | 0.602094 | 2.2:-8599615 | None:intergenic |
AACGCGAAAGTTCCAAGTGG+TGG | 0.602185 | 2.2:+8597537 | MS.gene043467:CDS |
GAGGAAGATAGAAGCCGCGA+GGG | 0.603991 | 2.2:+8600929 | MS.gene043467:CDS |
TGGGAGTCGTGATCTGCAGA+TGG | 0.609717 | 2.2:+8597887 | MS.gene043467:CDS |
CCGGAAGATTCTGACTGAGA+GGG | 0.615174 | 2.2:+8600118 | MS.gene043467:CDS |
TCCGGAAGATTCTGACTGAG+AGG | 0.615920 | 2.2:+8600117 | MS.gene043467:CDS |
TAAACTGTAGGTAGCTGACC+GGG | 0.622736 | 2.2:-8599603 | None:intergenic |
TGTCTTTGACACCAACGAGA+CGG | 0.624230 | 2.2:-8597668 | None:intergenic |
TGCAATTGAAGCCAAGCAGG+TGG | 0.632190 | 2.2:+8600211 | MS.gene043467:CDS |
GAAAGCTGGATTGTTGGCAA+TGG | 0.633552 | 2.2:-8600898 | None:intergenic |
ACATGAAACTTTGAAAGCTG+TGG | 0.633777 | 2.2:+8599674 | MS.gene043467:CDS |
TGGCTGCACAAGAAGCTGAG+AGG | 0.639141 | 2.2:+8600231 | MS.gene043467:CDS |
GCACGAACATCATAGATCAC+CGG | 0.645792 | 2.2:-8597837 | None:intergenic |
GACGGTTAAACACGATAGCA+CGG | 0.646783 | 2.2:-8597650 | None:intergenic |
AGCAGTAAACTCCTTGCCAA+AGG | 0.656274 | 2.2:-8600189 | None:intergenic |
AGTCTTTACAATGTTGAGGG+AGG | 0.662722 | 2.2:+8597624 | MS.gene043467:CDS |
TCTCGTTGGTGTCAAAGACA+AGG | 0.674892 | 2.2:+8597671 | MS.gene043467:CDS |
CCAACTTATTACACAGCGGG+AGG | 0.682391 | 2.2:+8599716 | MS.gene043467:CDS |
TGAGGAAGATAGAAGCCGCG+AGG | 0.696862 | 2.2:+8600928 | MS.gene043467:CDS |
AACATGTGCTATCTCCCTCG+CGG | 0.711001 | 2.2:-8600943 | None:intergenic |
AAGAACGCGAAAGTTCCAAG+TGG | 0.742151 | 2.2:+8597534 | MS.gene043467:CDS |
ATCCAGCTTTCATCACACTG+AGG | 0.780168 | 2.2:+8600910 | MS.gene043467:CDS |
CCAGCCAACTTATTACACAG+CGG | 0.790079 | 2.2:+8599712 | MS.gene043467:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAACATTTCTAAATTTAA+AGG | - | chr2.2:8598670-8598689 | None:intergenic | 10.0% |
!! | TAAACATTTCTAAATTTAAA+GGG | - | chr2.2:8598669-8598688 | None:intergenic | 10.0% |
!!! | AGTTTTAATTAATAATTCAT+AGG | + | chr2.2:8599417-8599436 | MS.gene043467:intron | 10.0% |
!! | AAATATAATGAAACATATAG+AGG | - | chr2.2:8598406-8598425 | None:intergenic | 15.0% |
!! | ATATAAGCTATTTATAAAAC+TGG | - | chr2.2:8598594-8598613 | None:intergenic | 15.0% |
!! | GAATATGATATATCAAAAAT+GGG | - | chr2.2:8598780-8598799 | None:intergenic | 15.0% |
!! | GTTAAATGTTTCTTATAAAT+AGG | - | chr2.2:8598966-8598985 | None:intergenic | 15.0% |
!! | TGAATATGATATATCAAAAA+TGG | - | chr2.2:8598781-8598800 | None:intergenic | 15.0% |
!! | TTTGATATATCATATTCAAA+TGG | + | chr2.2:8598783-8598802 | MS.gene043467:intron | 15.0% |
!!! | ATTATGTCTTCTAATTTTTT+TGG | + | chr2.2:8599380-8599399 | MS.gene043467:intron | 15.0% |
!!! | TTTATTTTATCTTTAGCTAT+AGG | - | chr2.2:8598005-8598024 | None:intergenic | 15.0% |
!! | AAATAATCTAACATAATGAC+AGG | - | chr2.2:8599827-8599846 | None:intergenic | 20.0% |
!! | ACATCCTACAATTTATTTAT+TGG | + | chr2.2:8599964-8599983 | MS.gene043467:intron | 20.0% |
!! | ATGTTTCTTATAAATAGGAA+AGG | - | chr2.2:8598961-8598980 | None:intergenic | 20.0% |
!! | ATTCATGAAAATTATATCAC+TGG | - | chr2.2:8598431-8598450 | None:intergenic | 20.0% |
!! | ATTTACACATAATACTTTCA+AGG | - | chr2.2:8599901-8599920 | None:intergenic | 20.0% |
!! | CAAACCAATAAATAAATTGT+AGG | - | chr2.2:8599971-8599990 | None:intergenic | 20.0% |
!! | GAGAAAAATCTAAATACTAA+CGG | - | chr2.2:8598859-8598878 | None:intergenic | 20.0% |
!! | TTAATAGATCTATTCTTTGT+AGG | + | chr2.2:8600079-8600098 | MS.gene043467:intron | 20.0% |
!! | TTTGTGAATTGAAATGATAT+GGG | + | chr2.2:8597750-8597769 | MS.gene043467:intron | 20.0% |
!!! | AACTGTATTCAGATTTTAAA+AGG | + | chr2.2:8598466-8598485 | MS.gene043467:intron | 20.0% |
!!! | ATTTTCATGTAGAATACATT+CGG | + | chr2.2:8600384-8600403 | MS.gene043467:intron | 20.0% |
!!! | CGTTTTTACAAAGTTTATAT+TGG | + | chr2.2:8598541-8598560 | MS.gene043467:intron | 20.0% |
!!! | GTCAACTTTTTCTTATAAAT+AGG | + | chr2.2:8599065-8599084 | MS.gene043467:intron | 20.0% |
!!! | TGATTTGAAATAGTTCTTAA+GGG | - | chr2.2:8599147-8599166 | None:intergenic | 20.0% |
!!! | TTTTGTGAATTGAAATGATA+TGG | + | chr2.2:8597749-8597768 | MS.gene043467:intron | 20.0% |
! | AAAGTTTCATGTATGATAGA+AGG | - | chr2.2:8599666-8599685 | None:intergenic | 25.0% |
! | AATCTATAAACTTGAAGTAC+TGG | - | chr2.2:8599476-8599495 | None:intergenic | 25.0% |
! | ATTCAGAGGATAAACATAAA+AGG | - | chr2.2:8599289-8599308 | None:intergenic | 25.0% |
! | CATTGCATAAATGATGTATT+TGG | + | chr2.2:8598996-8599015 | MS.gene043467:intron | 25.0% |
! | CTTATGTATAAGTTTGCATA+AGG | + | chr2.2:8597975-8597994 | MS.gene043467:intron | 25.0% |
! | CTTGATTTCGTTGAATTTAT+CGG | + | chr2.2:8597726-8597745 | MS.gene043467:intron | 25.0% |
! | TATCATATTCAAATGGTGTA+AGG | + | chr2.2:8598790-8598809 | MS.gene043467:intron | 25.0% |
! | TATTGATCAACATTGAATGT+TGG | + | chr2.2:8600783-8600802 | MS.gene043467:intron | 25.0% |
! | TCTAAATAAAACTGGATTTC+AGG | - | chr2.2:8598208-8598227 | None:intergenic | 25.0% |
! | TGAAAAAAGCTTATGCAAAA+TGG | + | chr2.2:8598094-8598113 | MS.gene043467:intron | 25.0% |
! | TTCATAAAACATATGCTACT+GGG | - | chr2.2:8599935-8599954 | None:intergenic | 25.0% |
! | TTCATTATAATTCTCTCCAA+GGG | - | chr2.2:8599634-8599653 | None:intergenic | 25.0% |
! | TTCTTATAAATAGGAAAGGA+GGG | - | chr2.2:8598957-8598976 | None:intergenic | 25.0% |
! | TTGGAGAGAATTATAATGAA+CGG | + | chr2.2:8599634-8599653 | MS.gene043467:CDS | 25.0% |
! | TTTCATAAAACATATGCTAC+TGG | - | chr2.2:8599936-8599955 | None:intergenic | 25.0% |
! | TTTCTTATAAATAGGAAAGG+AGG | - | chr2.2:8598958-8598977 | None:intergenic | 25.0% |
!! | ATACATAATGATTTTCAGAC+AGG | - | chr2.2:8598319-8598338 | None:intergenic | 25.0% |
!! | CTGATTTGAAATAGTTCTTA+AGG | - | chr2.2:8599148-8599167 | None:intergenic | 25.0% |
!! | CTTTTTCTTATAAATAGGAC+CGG | + | chr2.2:8599070-8599089 | MS.gene043467:intron | 25.0% |
!! | GATTTGAAATAGTTCTTAAG+GGG | - | chr2.2:8599146-8599165 | None:intergenic | 25.0% |
!! | TGGTTTGAATTCATTTTAAG+TGG | + | chr2.2:8599984-8600003 | MS.gene043467:intron | 25.0% |
!! | TTATTTTCATAAGTTCTCCA+AGG | - | chr2.2:8598072-8598091 | None:intergenic | 25.0% |
!!! | ATTTTTTTGGATGTCAATGT+TGG | + | chr2.2:8599393-8599412 | MS.gene043467:intron | 25.0% |
!!! | GGTTTGAATTCATTTTAAGT+GGG | + | chr2.2:8599985-8600004 | MS.gene043467:intron | 25.0% |
!!! | TCTTTTGATTCCTTAAACAA+TGG | - | chr2.2:8600588-8600607 | None:intergenic | 25.0% |
AAACAACAAAAACATGTACC+AGG | - | chr2.2:8600360-8600379 | None:intergenic | 30.0% | |
AAAGGAAAATTCAGACTACA+AGG | - | chr2.2:8599271-8599290 | None:intergenic | 30.0% | |
AAATCTGGTTGTGTTTAATG+TGG | + | chr2.2:8600525-8600544 | MS.gene043467:intron | 30.0% | |
AACAGTCTTTACAATGTTGA+GGG | + | chr2.2:8597621-8597640 | MS.gene043467:CDS | 30.0% | |
AATAAGTTGTTCATCCAAAC+AGG | - | chr2.2:8597919-8597938 | None:intergenic | 30.0% | |
AATCTGGTTGTGTTTAATGT+GGG | + | chr2.2:8600526-8600545 | MS.gene043467:intron | 30.0% | |
AATTGACTGAGATGTAAAAC+TGG | - | chr2.2:8600764-8600783 | None:intergenic | 30.0% | |
ACACTTTACAGGTGAAAATT+GGG | + | chr2.2:8599556-8599575 | MS.gene043467:intron | 30.0% | |
ACATTACTTTGTTAACTAGG+GGG | - | chr2.2:8598376-8598395 | None:intergenic | 30.0% | |
AGCTATTTATAAAACTGGAG+AGG | - | chr2.2:8598589-8598608 | None:intergenic | 30.0% | |
AGGACATTACTTTGTTAACT+AGG | - | chr2.2:8598379-8598398 | None:intergenic | 30.0% | |
AGTAACTGCATAAGAATTCA+CGG | - | chr2.2:8600328-8600347 | None:intergenic | 30.0% | |
AGTATGAATGATGCACATAA+CGG | - | chr2.2:8598346-8598365 | None:intergenic | 30.0% | |
ATAAGTTGTTCATCCAAACA+GGG | - | chr2.2:8597918-8597937 | None:intergenic | 30.0% | |
ATACCATCACAAAGAATAGA+GGG | - | chr2.2:8598295-8598314 | None:intergenic | 30.0% | |
ATGAAACATATAGAGGATTG+AGG | - | chr2.2:8598399-8598418 | None:intergenic | 30.0% | |
ATTGGAGTTTACCTTTGTTA+AGG | + | chr2.2:8598559-8598578 | MS.gene043467:intron | 30.0% | |
CATGCAAGTCTAAATAAAAC+TGG | - | chr2.2:8598216-8598235 | None:intergenic | 30.0% | |
CATTGAGTAACTAATGTACT+TGG | - | chr2.2:8599035-8599054 | None:intergenic | 30.0% | |
GACATTACTTTGTTAACTAG+GGG | - | chr2.2:8598377-8598396 | None:intergenic | 30.0% | |
GGACATTACTTTGTTAACTA+GGG | - | chr2.2:8598378-8598397 | None:intergenic | 30.0% | |
GTTCATTATAATTCTCTCCA+AGG | - | chr2.2:8599635-8599654 | None:intergenic | 30.0% | |
TAACAGTCTTTACAATGTTG+AGG | + | chr2.2:8597620-8597639 | MS.gene043467:CDS | 30.0% | |
TATACCATCACAAAGAATAG+AGG | - | chr2.2:8598296-8598315 | None:intergenic | 30.0% | |
TATTGCAAATTCAGCAAACA+AGG | + | chr2.2:8600965-8600984 | MS.gene043467:CDS | 30.0% | |
TGGAGAGAATTATAATGAAC+GGG | + | chr2.2:8599635-8599654 | MS.gene043467:CDS | 30.0% | |
TTGATGTGTAAAAAAGGTCA+GGG | - | chr2.2:8600841-8600860 | None:intergenic | 30.0% | |
TTTCTTAAACAACGACCTTA+GGG | + | chr2.2:8600689-8600708 | MS.gene043467:intron | 30.0% | |
! | TCAACAATGATTTTGCAATC+AGG | - | chr2.2:8598709-8598728 | None:intergenic | 30.0% |
!! | AAACTTGAAGTACTGGAAAT+TGG | - | chr2.2:8599469-8599488 | None:intergenic | 30.0% |
!! | AAAGACAAGGTCATTTTCTA+GGG | + | chr2.2:8597684-8597703 | MS.gene043467:intron | 30.0% |
!! | ATTTTTCAAACCATGTTGCT+TGG | + | chr2.2:8599779-8599798 | MS.gene043467:intron | 30.0% |
!! | TTTTTCAAACCATGTTGCTT+GGG | + | chr2.2:8599780-8599799 | MS.gene043467:intron | 30.0% |
!!! | ACCTTTTTTACACATCAACA+GGG | + | chr2.2:8600843-8600862 | MS.gene043467:intron | 30.0% |
!!! | TTCCACATGAATTTGTTTTG+AGG | + | chr2.2:8598500-8598519 | MS.gene043467:intron | 30.0% |
AAATACTAACAAGTGCCCTT+AGG | + | chr2.2:8600562-8600581 | MS.gene043467:intron | 35.0% | |
AACTCAAGGAAACTTTGTCT+AGG | - | chr2.2:8600671-8600690 | None:intergenic | 35.0% | |
ACATTTCAATCTTGTGATCC+TGG | + | chr2.2:8598890-8598909 | MS.gene043467:intron | 35.0% | |
ACCCTGTTGATGTGTAAAAA+AGG | - | chr2.2:8600847-8600866 | None:intergenic | 35.0% | |
ACTGTCTTTGTTCACAAATC+TGG | + | chr2.2:8600510-8600529 | MS.gene043467:intron | 35.0% | |
AGAGTATGATGCAAATTCAG+AGG | - | chr2.2:8599303-8599322 | None:intergenic | 35.0% | |
AGGGAGTAGACAATAATGAT+CGG | - | chr2.2:8598938-8598957 | None:intergenic | 35.0% | |
ATCAAGAGCAATGTTGAAGT+TGG | - | chr2.2:8600147-8600166 | None:intergenic | 35.0% | |
ATTCCTTAAACAATGGCCTA+AGG | - | chr2.2:8600581-8600600 | None:intergenic | 35.0% | |
CAACAATTAAATACTCCCTC+CGG | - | chr2.2:8599092-8599111 | None:intergenic | 35.0% | |
CACACTTTACAGGTGAAAAT+TGG | + | chr2.2:8599555-8599574 | MS.gene043467:intron | 35.0% | |
CATGATGTTGGATACATCTT+TGG | + | chr2.2:8600475-8600494 | MS.gene043467:intron | 35.0% | |
CATTACTTTGTTAACTAGGG+GGG | - | chr2.2:8598375-8598394 | None:intergenic | 35.0% | |
CTCCTCAAAACAAATTCATG+TGG | - | chr2.2:8598505-8598524 | None:intergenic | 35.0% | |
GTCGTTGTTTAAGAAACTCA+AGG | - | chr2.2:8600685-8600704 | None:intergenic | 35.0% | |
GTCTGTGTGGTGATTTAAAA+TGG | + | chr2.2:8599201-8599220 | MS.gene043467:intron | 35.0% | |
GTTATGTGCATCATTCATAC+TGG | + | chr2.2:8598345-8598364 | MS.gene043467:intron | 35.0% | |
GTTGATGTGTAAAAAAGGTC+AGG | - | chr2.2:8600842-8600861 | None:intergenic | 35.0% | |
GTTTCTTAAACAACGACCTT+AGG | + | chr2.2:8600688-8600707 | MS.gene043467:intron | 35.0% | |
TAGACTTGCATGTCATCATT+AGG | + | chr2.2:8598224-8598243 | MS.gene043467:intron | 35.0% | |
TATAGTTAAGTCCAAATGCC+AGG | - | chr2.2:8598911-8598930 | None:intergenic | 35.0% | |
TCATAGGTAGCAAAGATGTT+TGG | + | chr2.2:8599433-8599452 | MS.gene043467:intron | 35.0% | |
TGATGTGTAAAAAAGGTCAG+GGG | - | chr2.2:8600840-8600859 | None:intergenic | 35.0% | |
TGTTCTCTTGATCATGATGT+TGG | + | chr2.2:8600463-8600482 | MS.gene043467:intron | 35.0% | |
TTAAATCACCACACAGACAA+CGG | - | chr2.2:8599199-8599218 | None:intergenic | 35.0% | |
TTCCTTAAACAATGGCCTAA+GGG | - | chr2.2:8600580-8600599 | None:intergenic | 35.0% | |
TTCTTATAAATAGGACCGGA+GGG | + | chr2.2:8599074-8599093 | MS.gene043467:intron | 35.0% | |
TTGAGCTAATCTCTTGACAT+AGG | - | chr2.2:8598162-8598181 | None:intergenic | 35.0% | |
TTGGGAATTATTGGTGGAAT+TGG | + | chr2.2:8597582-8597601 | MS.gene043467:CDS | 35.0% | |
TTTCCCTCTATTCTTTGTGA+TGG | + | chr2.2:8598289-8598308 | MS.gene043467:intron | 35.0% | |
TTTCTTATAAATAGGACCGG+AGG | + | chr2.2:8599073-8599092 | MS.gene043467:intron | 35.0% | |
! | ACATGAAACTTTGAAAGCTG+TGG | + | chr2.2:8599674-8599693 | MS.gene043467:CDS | 35.0% |
! | ATCTTTTGCTGAATCTTCAG+GGG | + | chr2.2:8601006-8601025 | MS.gene043467:CDS | 35.0% |
! | GAAGTATTTGAACAACTGCT+AGG | + | chr2.2:8598727-8598746 | MS.gene043467:intron | 35.0% |
! | GATCTTTTGCTGAATCTTCA+GGG | + | chr2.2:8601005-8601024 | MS.gene043467:CDS | 35.0% |
! | TCAATTACTAGTCTGACCTT+TGG | + | chr2.2:8600173-8600192 | MS.gene043467:CDS | 35.0% |
! | TGATCTTTTGCTGAATCTTC+AGG | + | chr2.2:8601004-8601023 | MS.gene043467:CDS | 35.0% |
! | TTTTGATGCCGTTAAACATC+TGG | + | chr2.2:8599238-8599257 | MS.gene043467:intron | 35.0% |
!! | AGATAAGACAGTGCTAGTTT+TGG | - | chr2.2:8600440-8600459 | None:intergenic | 35.0% |
!! | ATTTGGTTGAGAGTACTTCT+GGG | + | chr2.2:8597868-8597887 | MS.gene043467:CDS | 35.0% |
!! | CAAAGACAAGGTCATTTTCT+AGG | + | chr2.2:8597683-8597702 | MS.gene043467:intron | 35.0% |
!!! | AAGGTCATTTTCTAGGGTTT+AGG | + | chr2.2:8597690-8597709 | MS.gene043467:intron | 35.0% |
!!! | AGGTCATTTTCTAGGGTTTA+GGG | + | chr2.2:8597691-8597710 | MS.gene043467:intron | 35.0% |
!!! | ATAAGACAGTGCTAGTTTTG+GGG | - | chr2.2:8600438-8600457 | None:intergenic | 35.0% |
!!! | GACCTTTTTTACACATCAAC+AGG | + | chr2.2:8600842-8600861 | MS.gene043467:intron | 35.0% |
!!! | GATAAGACAGTGCTAGTTTT+GGG | - | chr2.2:8600439-8600458 | None:intergenic | 35.0% |
AACTGGATTTCAGGCATGTT+TGG | - | chr2.2:8598199-8598218 | None:intergenic | 40.0% | |
AATCTTGTGATCCTGGCATT+TGG | + | chr2.2:8598897-8598916 | MS.gene043467:intron | 40.0% | |
ACCTGTAAAGTGTGTACATG+CGG | - | chr2.2:8599549-8599568 | None:intergenic | 40.0% | |
AGTCTTTACAATGTTGAGGG+AGG | + | chr2.2:8597624-8597643 | MS.gene043467:CDS | 40.0% | |
ATAAACTGTAGGTAGCTGAC+CGG | - | chr2.2:8599607-8599626 | None:intergenic | 40.0% | |
ATCAAACAACCCTGTGAAAG+TGG | - | chr2.2:8599355-8599374 | None:intergenic | 40.0% | |
ATCACAAAATGCGTTCCTTC+AGG | - | chr2.2:8597801-8597820 | None:intergenic | 40.0% | |
ATGTGTAAAAAAGGTCAGGG+GGG | - | chr2.2:8600838-8600857 | None:intergenic | 40.0% | |
CTGGCGAAATTGGGAATTAT+TGG | + | chr2.2:8597573-8597592 | MS.gene043467:CDS | 40.0% | |
GATGTGTAAAAAAGGTCAGG+GGG | - | chr2.2:8600839-8600858 | None:intergenic | 40.0% | |
GATTTCAGGCATGTTTGGAT+TGG | - | chr2.2:8598194-8598213 | None:intergenic | 40.0% | |
GCCAATCACCAGATGTTTAA+CGG | - | chr2.2:8599249-8599268 | None:intergenic | 40.0% | |
GCGAAATTGGGAATTATTGG+TGG | + | chr2.2:8597576-8597595 | MS.gene043467:CDS | 40.0% | |
GTATTTGAACAACTGCTAGG+TGG | + | chr2.2:8598730-8598749 | MS.gene043467:intron | 40.0% | |
GTCAGCTACCTACAGTTTAT+CGG | + | chr2.2:8599607-8599626 | MS.gene043467:CDS | 40.0% | |
GTTGTGTAGGTTTATCCTGA+AGG | + | chr2.2:8597783-8597802 | MS.gene043467:intron | 40.0% | |
TCAAACAACCCTGTGAAAGT+GGG | - | chr2.2:8599354-8599373 | None:intergenic | 40.0% | |
TGTGATGAAAGCTGGATTGT+TGG | - | chr2.2:8600907-8600926 | None:intergenic | 40.0% | |
TTCAGCAAACAAGGTTTACC+TGG | + | chr2.2:8600974-8600993 | MS.gene043467:CDS | 40.0% | |
TTCTTATGCAGTTACTGCTG+TGG | + | chr2.2:8600332-8600351 | MS.gene043467:intron | 40.0% | |
! | AAGTGCTGTAATTAGAGCAC+AGG | + | chr2.2:8600292-8600311 | MS.gene043467:CDS | 40.0% |
! | CTCTTGACATAGGTATTGTG+AGG | - | chr2.2:8598152-8598171 | None:intergenic | 40.0% |
! | GAAGTACTCTCAACCAAATG+AGG | - | chr2.2:8597867-8597886 | None:intergenic | 40.0% |
! | TTTTACACATCAACAGGGTG+AGG | + | chr2.2:8600848-8600867 | MS.gene043467:intron | 40.0% |
!! | CATTTGGTTGAGAGTACTTC+TGG | + | chr2.2:8597867-8597886 | MS.gene043467:CDS | 40.0% |
!! | GCTGTTTTCATAAGCTACCT+TGG | + | chr2.2:8598052-8598071 | MS.gene043467:intron | 40.0% |
!! | TGAGAGGGCTAAATTTGTTG+TGG | + | chr2.2:8600247-8600266 | MS.gene043467:CDS | 40.0% |
!!! | GGTCATTTTCTAGGGTTTAG+GGG | + | chr2.2:8597692-8597711 | MS.gene043467:intron | 40.0% |
AACAAGGTTTACCTGGAAGC+AGG | + | chr2.2:8600981-8601000 | MS.gene043467:CDS | 45.0% | |
AACACGTCATGCTAACCCTA+AGG | - | chr2.2:8600707-8600726 | None:intergenic | 45.0% | |
AAGAACGCGAAAGTTCCAAG+TGG | + | chr2.2:8597534-8597553 | MS.gene043467:CDS | 45.0% | |
AAGTTGGCTGGCATTGTACT+GGG | - | chr2.2:8599703-8599722 | None:intergenic | 45.0% | |
ACCGCATGTACACACTTTAC+AGG | + | chr2.2:8599545-8599564 | MS.gene043467:intron | 45.0% | |
AGCAGTAAACTCCTTGCCAA+AGG | - | chr2.2:8600192-8600211 | None:intergenic | 45.0% | |
AGGCTGTTAGTCGTGAAATC+CGG | + | chr2.2:8600099-8600118 | MS.gene043467:intron | 45.0% | |
ATCCAGCTTTCATCACACTG+AGG | + | chr2.2:8600910-8600929 | MS.gene043467:CDS | 45.0% | |
ATCGTGTTTAACCGTCTCGT+TGG | + | chr2.2:8597657-8597676 | MS.gene043467:CDS | 45.0% | |
CAGCCAACTTATTACACAGC+GGG | + | chr2.2:8599713-8599732 | MS.gene043467:CDS | 45.0% | |
CCAGCCAACTTATTACACAG+CGG | + | chr2.2:8599712-8599731 | MS.gene043467:CDS | 45.0% | |
GAAAGCTGGATTGTTGGCAA+TGG | - | chr2.2:8600901-8600920 | None:intergenic | 45.0% | |
GAATCTTCAGGGGATCAACT+TGG | + | chr2.2:8601016-8601035 | MS.gene043467:CDS | 45.0% | |
GACGGTTAAACACGATAGCA+CGG | - | chr2.2:8597653-8597672 | None:intergenic | 45.0% | |
GATAACTCACCCAAGCAACA+TGG | - | chr2.2:8599792-8599811 | None:intergenic | 45.0% | |
GATCATTTCCGTTGTCTGTG+TGG | + | chr2.2:8599188-8599207 | MS.gene043467:intron | 45.0% | |
GCACGAACATCATAGATCAC+CGG | - | chr2.2:8597840-8597859 | None:intergenic | 45.0% | |
GCATCAACACTGGCGAAATT+GGG | + | chr2.2:8597564-8597583 | MS.gene043467:CDS | 45.0% | |
GCCGTTAAACATCTGGTGAT+TGG | + | chr2.2:8599245-8599264 | MS.gene043467:intron | 45.0% | |
GGAGAGGCAATCCTTAACAA+AGG | - | chr2.2:8598573-8598592 | None:intergenic | 45.0% | |
TAAACTGTAGGTAGCTGACC+GGG | - | chr2.2:8599606-8599625 | None:intergenic | 45.0% | |
TACTTTGTTAACTAGGGGGG+TGG | - | chr2.2:8598372-8598391 | None:intergenic | 45.0% | |
TCCTTTCTCCCACTTTCACA+GGG | + | chr2.2:8599343-8599362 | MS.gene043467:intron | 45.0% | |
TGCATCAACACTGGCGAAAT+TGG | + | chr2.2:8597563-8597582 | MS.gene043467:CDS | 45.0% | |
TGCCCTTAGGCCATTGTTTA+AGG | + | chr2.2:8600575-8600594 | MS.gene043467:intron | 45.0% | |
TGTCTTTGACACCAACGAGA+CGG | - | chr2.2:8597671-8597690 | None:intergenic | 45.0% | |
TTCCTCAGTGTGATGAAAGC+TGG | - | chr2.2:8600915-8600934 | None:intergenic | 45.0% | |
TTGTGATTCCGTGGTTTGAG+AGG | + | chr2.2:8597814-8597833 | MS.gene043467:CDS | 45.0% | |
! | AATGGCTTGTCCGATCAGTT+GGG | - | chr2.2:8600883-8600902 | None:intergenic | 45.0% |
! | GAACGCATTTTGTGATTCCG+TGG | + | chr2.2:8597805-8597824 | MS.gene043467:CDS | 45.0% |
! | TAAGTTGGCTGGCATTGTAC+TGG | - | chr2.2:8599704-8599723 | None:intergenic | 45.0% |
! | TACTAGTCTGACCTTTGGCA+AGG | + | chr2.2:8600178-8600197 | MS.gene043467:CDS | 45.0% |
!! | GCTAAAAGTGCCCAACTGAT+CGG | + | chr2.2:8600870-8600889 | MS.gene043467:CDS | 45.0% |
!! | GGGTGTGTTGTTTGTTGTGT+AGG | + | chr2.2:8597770-8597789 | MS.gene043467:intron | 45.0% |
!! | TCTCGTTGGTGTCAAAGACA+AGG | + | chr2.2:8597671-8597690 | MS.gene043467:CDS | 45.0% |
AACATGTGCTATCTCCCTCG+CGG | - | chr2.2:8600946-8600965 | None:intergenic | 50.0% | |
AACGCGAAAGTTCCAAGTGG+TGG | + | chr2.2:8597537-8597556 | MS.gene043467:CDS | 50.0% | |
ACCCTGTGAAAGTGGGAGAA+AGG | - | chr2.2:8599347-8599366 | None:intergenic | 50.0% | |
CCAACTTATTACACAGCGGG+AGG | + | chr2.2:8599716-8599735 | MS.gene043467:CDS | 50.0% | |
CCAAGGGTCCGATAAACTGT+AGG | - | chr2.2:8599618-8599637 | None:intergenic | 50.0% | |
CCCTCTCAGTCAGAATCTTC+CGG | - | chr2.2:8600121-8600140 | None:intergenic | 50.0% | |
CCGGAAGATTCTGACTGAGA+GGG | + | chr2.2:8600118-8600137 | MS.gene043467:CDS | 50.0% | |
CCTACAGTTTATCGGACCCT+TGG | + | chr2.2:8599615-8599634 | MS.gene043467:CDS | 50.0% | |
CCTCCCGCTGTGTAATAAGT+TGG | - | chr2.2:8599719-8599738 | None:intergenic | 50.0% | |
GCAAAAGATCACCTGCTTCC+AGG | - | chr2.2:8600995-8601014 | None:intergenic | 50.0% | |
GCAGATGGTAAGTCCCTGTT+TGG | + | chr2.2:8597902-8597921 | MS.gene043467:intron | 50.0% | |
GTCCTTTCTCCCACTTTCAC+AGG | + | chr2.2:8599342-8599361 | MS.gene043467:intron | 50.0% | |
TCCGGAAGATTCTGACTGAG+AGG | + | chr2.2:8600117-8600136 | MS.gene043467:CDS | 50.0% | |
TGCAATTGAAGCCAAGCAGG+TGG | + | chr2.2:8600211-8600230 | MS.gene043467:CDS | 50.0% | |
TGCTGCAATTGAAGCCAAGC+AGG | + | chr2.2:8600208-8600227 | MS.gene043467:CDS | 50.0% | |
TGTTCGTGCACGTCCTCATT+TGG | + | chr2.2:8597851-8597870 | MS.gene043467:CDS | 50.0% | |
! | CAATGGCTTGTCCGATCAGT+TGG | - | chr2.2:8600884-8600903 | None:intergenic | 50.0% |
! | CCGCTGTGTAATAAGTTGGC+TGG | - | chr2.2:8599715-8599734 | None:intergenic | 50.0% |
ATCACCGGCCTCTCAAACCA+CGG | - | chr2.2:8597825-8597844 | None:intergenic | 55.0% | |
GAGGAAGATAGAAGCCGCGA+GGG | + | chr2.2:8600929-8600948 | MS.gene043467:CDS | 55.0% | |
GATTCCGTGGTTTGAGAGGC+CGG | + | chr2.2:8597818-8597837 | MS.gene043467:CDS | 55.0% | |
GGCTGCACAAGAAGCTGAGA+GGG | + | chr2.2:8600232-8600251 | MS.gene043467:CDS | 55.0% | |
GTCCTTACTCGTCCTTTGCC+CGG | + | chr2.2:8599585-8599604 | MS.gene043467:CDS | 55.0% | |
TGAGGAAGATAGAAGCCGCG+AGG | + | chr2.2:8600928-8600947 | MS.gene043467:CDS | 55.0% | |
TGGCTGCACAAGAAGCTGAG+AGG | + | chr2.2:8600231-8600250 | MS.gene043467:CDS | 55.0% | |
TGGGAGTCGTGATCTGCAGA+TGG | + | chr2.2:8597887-8597906 | MS.gene043467:CDS | 55.0% | |
TTCTTGTGCAGCCACCTGCT+TGG | - | chr2.2:8600225-8600244 | None:intergenic | 55.0% | |
GACCGGGCAAAGGACGAGTA+AGG | - | chr2.2:8599590-8599609 | None:intergenic | 60.0% | |
GCAGTTACTGCTGTGGTGCC+TGG | + | chr2.2:8600339-8600358 | MS.gene043467:intron | 60.0% | |
GTAGGTAGCTGACCGGGCAA+AGG | - | chr2.2:8599600-8599619 | None:intergenic | 60.0% | |
GTTGATGCAGCGCCACCACT+TGG | - | chr2.2:8597552-8597571 | None:intergenic | 60.0% | |
! | TGGTGGCGCTGCATCAACAC+TGG | + | chr2.2:8597554-8597573 | MS.gene043467:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 8597525 | 8601055 | 8597525 | ID=MS.gene043467 |
chr2.2 | mRNA | 8597525 | 8601055 | 8597525 | ID=MS.gene043467.t1;Parent=MS.gene043467 |
chr2.2 | exon | 8597525 | 8597692 | 8597525 | ID=MS.gene043467.t1.exon1;Parent=MS.gene043467.t1 |
chr2.2 | CDS | 8597525 | 8597692 | 8597525 | ID=cds.MS.gene043467.t1;Parent=MS.gene043467.t1 |
chr2.2 | exon | 8597792 | 8597908 | 8597792 | ID=MS.gene043467.t1.exon2;Parent=MS.gene043467.t1 |
chr2.2 | CDS | 8597792 | 8597908 | 8597792 | ID=cds.MS.gene043467.t1;Parent=MS.gene043467.t1 |
chr2.2 | exon | 8599567 | 8599737 | 8599567 | ID=MS.gene043467.t1.exon3;Parent=MS.gene043467.t1 |
chr2.2 | CDS | 8599567 | 8599737 | 8599567 | ID=cds.MS.gene043467.t1;Parent=MS.gene043467.t1 |
chr2.2 | exon | 8600101 | 8600313 | 8600101 | ID=MS.gene043467.t1.exon4;Parent=MS.gene043467.t1 |
chr2.2 | CDS | 8600101 | 8600313 | 8600101 | ID=cds.MS.gene043467.t1;Parent=MS.gene043467.t1 |
chr2.2 | exon | 8600864 | 8601055 | 8600864 | ID=MS.gene043467.t1.exon5;Parent=MS.gene043467.t1 |
chr2.2 | CDS | 8600864 | 8601055 | 8600864 | ID=cds.MS.gene043467.t1;Parent=MS.gene043467.t1 |
Gene Sequence |
Protein sequence |