Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033161.t1 | AES91197.1 | 99.3 | 289 | 2 | 0 | 4 | 292 | 58 | 346 | 8.10E-156 | 559.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033161.t1 | Q5GI04 | 88.4 | 285 | 33 | 0 | 7 | 291 | 1 | 285 | 6.3e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033161.t1 | G7JPW9 | 99.3 | 289 | 2 | 0 | 4 | 292 | 58 | 346 | 5.8e-156 | 559.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043467 | MS.gene033161 | PPI |
| MS.gene033161 | MS.gene055768 | PPI |
| MS.gene033161 | MS.gene029948 | PPI |
| MS.gene033161 | MS.gene59292 | PPI |
| MS.gene033161 | MS.gene68929 | PPI |
| MS.gene033161 | MS.gene030984 | PPI |
| MS.gene033161 | MS.gene028857 | PPI |
| MS.gene31416 | MS.gene033161 | PPI |
| MS.gene033161 | MS.gene20481 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033161.t1 | MTR_4g107810 | 99.308 | 289 | 2 | 0 | 4 | 292 | 58 | 346 | 0.0 | 593 |
| MS.gene033161.t1 | MTR_4g107810 | 99.650 | 286 | 1 | 0 | 7 | 292 | 1 | 286 | 0.0 | 591 |
| MS.gene033161.t1 | MTR_4g107760 | 99.650 | 286 | 1 | 0 | 7 | 292 | 1 | 286 | 0.0 | 591 |
| MS.gene033161.t1 | MTR_4g107830 | 90.033 | 301 | 13 | 2 | 7 | 292 | 1 | 299 | 0.0 | 545 |
| MS.gene033161.t1 | MTR_4g107720 | 95.105 | 286 | 12 | 1 | 7 | 292 | 1 | 284 | 0.0 | 541 |
| MS.gene033161.t1 | MTR_6g011380 | 84.211 | 285 | 45 | 0 | 7 | 291 | 1 | 285 | 0.0 | 502 |
| MS.gene033161.t1 | MTR_4g107730 | 88.732 | 284 | 26 | 2 | 7 | 288 | 1 | 280 | 2.32e-178 | 493 |
| MS.gene033161.t1 | MTR_8g469160 | 78.169 | 284 | 62 | 0 | 7 | 290 | 1 | 284 | 5.70e-175 | 484 |
| MS.gene033161.t1 | MTR_6g460470 | 56.446 | 287 | 123 | 1 | 7 | 291 | 1 | 287 | 1.30e-117 | 340 |
| MS.gene033161.t1 | MTR_4g107700 | 96.471 | 85 | 1 | 1 | 208 | 292 | 6 | 88 | 4.56e-51 | 163 |
| MS.gene033161.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 167 | 218 | 1 | 65 | 5.64e-11 | 60.1 |
| MS.gene033161.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 5 | 25 | 205 | 71 | 249 | 5.83e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033161.t1 | AT5G62740 | 90.071 | 282 | 28 | 0 | 7 | 288 | 1 | 282 | 0.0 | 530 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 7 | 288 | 1 | 282 | 1.95e-175 | 486 |
| MS.gene033161.t1 | AT3G01290 | 79.433 | 282 | 58 | 0 | 7 | 288 | 1 | 282 | 1.83e-170 | 473 |
| MS.gene033161.t1 | AT5G51570 | 56.597 | 288 | 123 | 1 | 7 | 292 | 1 | 288 | 1.44e-121 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.222517 | 8.2:-17729759 | MS.gene033161:CDS |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.2:+17729670 | None:intergenic |
| CTTTATTTGCAAGATCTTCT+CGG | 0.287861 | 8.2:+17729947 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.2:+17730753 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.326852 | 8.2:-17731423 | MS.gene033161:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.2:-17730610 | MS.gene033161:intron |
| CTCTCTTCGGGTACAACAAT+TGG | 0.345701 | 8.2:-17731325 | MS.gene033161:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.373724 | 8.2:-17731354 | MS.gene033161:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.2:-17729799 | MS.gene033161:CDS |
| TTGCTGGGCATCTCTCTCTT+CGG | 0.388662 | 8.2:-17731338 | MS.gene033161:CDS |
| TGCTGGGCATCTCTCTCTTC+GGG | 0.395978 | 8.2:-17731337 | MS.gene033161:CDS |
| GCCCGCTTCACATGGACATC+TGG | 0.415565 | 8.2:+17730550 | None:intergenic |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.2:-17729849 | MS.gene033161:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.2:-17729667 | MS.gene033161:CDS |
| GCAGAGTCTAAATATCTCTC+TGG | 0.440487 | 8.2:-17729909 | MS.gene033161:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.2:-17731397 | MS.gene033161:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.2:-17731369 | MS.gene033161:CDS |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.2:-17729982 | MS.gene033161:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.2:-17730972 | MS.gene033161:CDS |
| GTCTAAATATCTCTCTGGGA+TGG | 0.503702 | 8.2:-17729904 | MS.gene033161:CDS |
| GCCAGATGTCCATGTGAAGC+GGG | 0.510212 | 8.2:-17730551 | MS.gene033161:CDS |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.2:-17731429 | MS.gene033161:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.2:-17731396 | MS.gene033161:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.2:+17731378 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.2:+17729728 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.2:-17729714 | MS.gene033161:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.2:-17731377 | MS.gene033161:CDS |
| TCTAAATATCTCTCTGGGAT+GGG | 0.549740 | 8.2:-17729903 | MS.gene033161:CDS |
| CATTCATAGCCCGCTTCACA+TGG | 0.551008 | 8.2:+17730542 | None:intergenic |
| CAACGTCAAGCTATTGTGGA+TGG | 0.553453 | 8.2:-17729870 | MS.gene033161:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.553484 | 8.2:-17729931 | MS.gene033161:CDS |
| TTTAGACTCTGCCTCACCCT+CGG | 0.553899 | 8.2:+17729920 | None:intergenic |
| ATAGTAACGAACCTTTGTCT+TGG | 0.554746 | 8.2:+17731287 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.2:+17729696 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.2:-17729720 | MS.gene033161:CDS |
| CAGAGTCTAAATATCTCTCT+GGG | 0.570826 | 8.2:-17729908 | MS.gene033161:CDS |
| TCCTTGGAAAACGAATTGCT+GGG | 0.571212 | 8.2:-17731353 | MS.gene033161:CDS |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.2:-17729805 | MS.gene033161:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.2:+17729731 | None:intergenic |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.2:+17731370 | None:intergenic |
| GGCAGCTAAGGAGAAGGCTG+AGG | 0.585754 | 8.2:-17729970 | MS.gene033161:CDS |
| TCGCCAACGTCAAGCTATTG+TGG | 0.586819 | 8.2:-17729874 | MS.gene033161:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.2:-17730963 | MS.gene033161:CDS |
| AGCCAGATGTCCATGTGAAG+CGG | 0.595395 | 8.2:-17730552 | MS.gene033161:CDS |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.2:+17730955 | None:intergenic |
| GCTATGAATGAAATCAATGC+AGG | 0.600928 | 8.2:-17730529 | MS.gene033161:intron |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.2:-17730718 | MS.gene033161:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.607568 | 8.2:-17729991 | MS.gene033161:intron |
| TGTGATCAGCTGCAAGAATG+AGG | 0.607950 | 8.2:-17729995 | MS.gene033161:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.610923 | 8.2:-17730760 | MS.gene033161:CDS |
| GAGGTTGGCAGCTAAGGAGA+AGG | 0.617756 | 8.2:-17729976 | MS.gene033161:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.2:-17731442 | MS.gene033161:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.2:-17730700 | MS.gene033161:intron |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.2:-17729678 | MS.gene033161:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.2:+17730960 | None:intergenic |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.2:-17729666 | MS.gene033161:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.2:-17729937 | MS.gene033161:CDS |
| ACTGATGAGATAGAGAACCC+TGG | 0.648950 | 8.2:+17729649 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.2:-17729936 | MS.gene033161:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.653157 | 8.2:-17731298 | MS.gene033161:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.2:+17729705 | None:intergenic |
| CATCCACAATAGCTTGACGT+TGG | 0.677687 | 8.2:+17729871 | None:intergenic |
| TGTCAAAATATTGAGTGACA+AGG | 0.695273 | 8.2:+17729775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTTTTATTGATA+TGG | - | chr8.2:17730464-17730483 | MS.gene033161:intron | 10.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.2:17729913-17729932 | None:intergenic | 15.0% |
| !!! | TCCTAAATCTAATTTTATTT+AGG | - | chr8.2:17730864-17730883 | MS.gene033161:intron | 15.0% |
| !! | AATATGCAAATTATCTACTA+AGG | - | chr8.2:17730314-17730333 | MS.gene033161:intron | 20.0% |
| !! | GCCTAAATAAAATTAGATTT+AGG | + | chr8.2:17730868-17730887 | None:intergenic | 20.0% |
| !! | GTTAAAATATAAGTCAAACA+AGG | + | chr8.2:17730982-17731001 | None:intergenic | 20.0% |
| !!! | TAAATACTTTCTTTTTGACT+AGG | - | chr8.2:17729919-17729938 | MS.gene033161:CDS | 20.0% |
| !!! | TTTTGACTAGGATTTTTTTT+AGG | - | chr8.2:17729931-17729950 | MS.gene033161:CDS | 20.0% |
| ! | AATTCAATGGAAAATATACG+AGG | + | chr8.2:17730081-17730100 | None:intergenic | 25.0% |
| ! | ACCAATCAACATTAATTCAA+TGG | + | chr8.2:17730094-17730113 | None:intergenic | 25.0% |
| ! | ATTGCAGTAAAAAGAAAATG+GGG | - | chr8.2:17729648-17729667 | MS.gene033161:CDS | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.2:17729904-17729923 | None:intergenic | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.2:17730230-17730249 | None:intergenic | 25.0% |
| ! | CATTGCAGTAAAAAGAAAAT+GGG | - | chr8.2:17729647-17729666 | MS.gene033161:CDS | 25.0% |
| ! | TCCATTGAATTAATGTTGAT+TGG | - | chr8.2:17730090-17730109 | MS.gene033161:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.2:17731371-17731390 | MS.gene033161:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.2:17730231-17730250 | MS.gene033161:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.2:17730031-17730050 | None:intergenic | 25.0% |
| !!! | TTTTATTTAGGCATTTCCTT+TGG | - | chr8.2:17730876-17730895 | MS.gene033161:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.2:17730412-17730431 | MS.gene033161:intron | 30.0% | |
| AATCAAATTAACATAGCACC+AGG | + | chr8.2:17729963-17729982 | None:intergenic | 30.0% | |
| ACCATATAAAGAAAACACGT+AGG | + | chr8.2:17729986-17730005 | None:intergenic | 30.0% | |
| ATATAGCAATTCGCGAATAA+AGG | + | chr8.2:17731093-17731112 | None:intergenic | 30.0% | |
| GATATTTGGCAAATAGAACT+CGG | + | chr8.2:17731069-17731088 | None:intergenic | 30.0% | |
| GTACATAAACATGCAATAAG+TGG | - | chr8.2:17730285-17730304 | MS.gene033161:intron | 30.0% | |
| TAACTTTGAATCATCTCAAC+AGG | - | chr8.2:17730504-17730523 | MS.gene033161:intron | 30.0% | |
| TGTCAAAATATTGAGTGACA+AGG | + | chr8.2:17731358-17731377 | None:intergenic | 30.0% | |
| TTATCTCTTTCACTAGTATC+AGG | - | chr8.2:17730005-17730024 | MS.gene033161:intron | 30.0% | |
| TTTATCTTATTCCCCAAAAG+AGG | - | chr8.2:17730705-17730724 | MS.gene033161:CDS | 30.0% | |
| TTTATTGATATGGTGAACTG+TGG | - | chr8.2:17730474-17730493 | MS.gene033161:intron | 30.0% | |
| ! | CTTTATTTGCAAGATCTTCT+CGG | + | chr8.2:17731186-17731205 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.2:17731303-17731322 | MS.gene033161:CDS | 30.0% |
| ! | TCCTACGTGTTTTCTTTATA+TGG | - | chr8.2:17729982-17730001 | MS.gene033161:CDS | 30.0% |
| !!! | AGGTTTTGGGAAATTTGAAA+AGG | - | chr8.2:17729721-17729740 | MS.gene033161:CDS | 30.0% |
| !!! | ATTTTTTTTAGGTACCATCC+TGG | - | chr8.2:17729942-17729961 | MS.gene033161:CDS | 30.0% |
| !!! | TGGTTTTAATATTTGCTTGC+AGG | - | chr8.2:17730110-17730129 | MS.gene033161:intron | 30.0% |
| AAATTAACATAGCACCAGGA+TGG | + | chr8.2:17729959-17729978 | None:intergenic | 35.0% | |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.2:17730370-17730389 | MS.gene033161:intron | 35.0% | |
| ATAGTAACGAACCTTTGTCT+TGG | + | chr8.2:17729846-17729865 | None:intergenic | 35.0% | |
| ATGTTTATGTACTGCTAAGC+AGG | + | chr8.2:17730277-17730296 | None:intergenic | 35.0% | |
| CAGAGTCTAAATATCTCTCT+GGG | - | chr8.2:17731222-17731241 | MS.gene033161:intron | 35.0% | |
| CATGTATGGAAAACTATGTG+AGG | - | chr8.2:17730802-17730821 | MS.gene033161:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+AGG | - | chr8.2:17730601-17730620 | MS.gene033161:CDS | 35.0% | |
| TCGCGAATAAAGGAGATATT+TGG | + | chr8.2:17731083-17731102 | None:intergenic | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.2:17731331-17731350 | MS.gene033161:CDS | 35.0% | |
| TGTTTATGTACTGCTAAGCA+GGG | + | chr8.2:17730276-17730295 | None:intergenic | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.2:17731302-17731321 | MS.gene033161:CDS | 35.0% |
| ! | TGGCTATGAAAGAAGGTTTT+GGG | - | chr8.2:17729708-17729727 | MS.gene033161:CDS | 35.0% |
| !! | AAACACTGATTGACCTCTTT+TGG | + | chr8.2:17730721-17730740 | None:intergenic | 35.0% |
| !! | AACACTGATTGACCTCTTTT+GGG | + | chr8.2:17730720-17730739 | None:intergenic | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.2:17730380-17730399 | None:intergenic | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.2:17731227-17731246 | MS.gene033161:intron | 35.0% |
| !!! | CTTGTTTTGTTGCTTCTTTG+GGG | - | chr8.2:17730899-17730918 | MS.gene033161:intron | 35.0% |
| !!! | GCTTGTTTTGTTGCTTCTTT+GGG | - | chr8.2:17730898-17730917 | MS.gene033161:intron | 35.0% |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.2:17731405-17731424 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.2:17729832-17729851 | MS.gene033161:CDS | 40.0% | |
| CATGGAATGACATGAACACT+TGG | + | chr8.2:17729886-17729905 | None:intergenic | 40.0% | |
| GAAGCAACAAAACAAGCCAA+AGG | + | chr8.2:17730895-17730914 | None:intergenic | 40.0% | |
| GCAGAGTCTAAATATCTCTC+TGG | - | chr8.2:17731221-17731240 | MS.gene033161:intron | 40.0% | |
| TCCTTGGAAAACGAATTGCT+GGG | - | chr8.2:17729777-17729796 | MS.gene033161:CDS | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.2:17729701-17729720 | MS.gene033161:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.2:17730430-17730449 | MS.gene033161:intron | 40.0% | |
| TTCACGTAATAGCAATGCTG+TGG | + | chr8.2:17730655-17730674 | None:intergenic | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.2:17729776-17729795 | MS.gene033161:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.2:17730158-17730177 | MS.gene033161:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.2:17729773-17729792 | None:intergenic | 40.0% |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.2:17731226-17731245 | MS.gene033161:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.2:17729707-17729726 | MS.gene033161:CDS | 40.0% |
| !! | ACACTGATTGACCTCTTTTG+GGG | + | chr8.2:17730719-17730738 | None:intergenic | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.2:17729733-17729752 | MS.gene033161:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.2:17729688-17729707 | MS.gene033161:CDS | 40.0% |
| !!! | GGCTTGTTTTGTTGCTTCTT+TGG | - | chr8.2:17730897-17730916 | MS.gene033161:intron | 40.0% |
| AACATAGCATGACCGCCTAT+TGG | + | chr8.2:17730926-17730945 | None:intergenic | 45.0% | |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.2:17731148-17731167 | MS.gene033161:intron | 45.0% | |
| ACTGATGAGATAGAGAACCC+TGG | + | chr8.2:17731484-17731503 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.2:17731139-17731158 | MS.gene033161:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.2:17730520-17730539 | MS.gene033161:intron | 45.0% | |
| CAACGTCAAGCTATTGTGGA+TGG | - | chr8.2:17731260-17731279 | MS.gene033161:intron | 45.0% | |
| CACGGTTCGTCATACATGTA+TGG | - | chr8.2:17730788-17730807 | MS.gene033161:intron | 45.0% | |
| CATCCACAATAGCTTGACGT+TGG | + | chr8.2:17731262-17731281 | None:intergenic | 45.0% | |
| CTCTCTTCGGGTACAACAAT+TGG | - | chr8.2:17729805-17729824 | MS.gene033161:CDS | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.2:17731325-17731344 | MS.gene033161:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.2:17731463-17731482 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.2:17731281-17731300 | MS.gene033161:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.2:17731452-17731471 | MS.gene033161:CDS | 45.0% | |
| TACATGTATGACGAACCGTG+AGG | + | chr8.2:17730788-17730807 | None:intergenic | 45.0% | |
| TAGGCGGTCATGCTATGTTA+TGG | - | chr8.2:17730927-17730946 | MS.gene033161:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.2:17731410-17731429 | MS.gene033161:CDS | 45.0% | |
| TGTACTGCTAAGCAGGGTTA+TGG | + | chr8.2:17730270-17730289 | None:intergenic | 45.0% | |
| TGTGATCAGCTGCAAGAATG+AGG | - | chr8.2:17731135-17731154 | MS.gene033161:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.2:17731194-17731213 | MS.gene033161:intron | 45.0% | |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.2:17731463-17731482 | MS.gene033161:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.2:17730178-17730197 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.2:17731464-17731483 | MS.gene033161:CDS | 45.0% |
| !! | TTGCTTCTTTGGGGTCCAAT+AGG | - | chr8.2:17730908-17730927 | MS.gene033161:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.2:17729734-17729753 | MS.gene033161:CDS | 45.0% |
| AGCCAGATGTCCATGTGAAG+CGG | - | chr8.2:17730578-17730597 | MS.gene033161:CDS | 50.0% | |
| ATGACGAACCGTGAGGACAA+GGG | + | chr8.2:17730781-17730800 | None:intergenic | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.2:17729763-17729782 | None:intergenic | 50.0% | |
| CATTCATAGCCCGCTTCACA+TGG | + | chr8.2:17730591-17730610 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.2:17729761-17729780 | MS.gene033161:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.2:17731193-17731212 | MS.gene033161:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.2:17731402-17731421 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.2:17731416-17731435 | MS.gene033161:CDS | 50.0% | |
| TATGACGAACCGTGAGGACA+AGG | + | chr8.2:17730782-17730801 | None:intergenic | 50.0% | |
| TCGCCAACGTCAAGCTATTG+TGG | - | chr8.2:17731256-17731275 | MS.gene033161:intron | 50.0% | |
| TTGCTGGGCATCTCTCTCTT+CGG | - | chr8.2:17729792-17729811 | MS.gene033161:CDS | 50.0% | |
| TTTAGACTCTGCCTCACCCT+CGG | + | chr8.2:17731213-17731232 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.2:17731323-17731342 | None:intergenic | 50.0% |
| ! | GCCCAGCAATTCGTTTTCCA+AGG | + | chr8.2:17729781-17729800 | None:intergenic | 50.0% |
| !! | CTTCTTTGGGGTCCAATAGG+CGG | - | chr8.2:17730911-17730930 | MS.gene033161:CDS | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.2:17731199-17731218 | MS.gene033161:intron | 55.0% | |
| AATGCCTGCCCTTGTCCTCA+CGG | - | chr8.2:17730770-17730789 | MS.gene033161:CDS | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.2:17730167-17730186 | MS.gene033161:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.2:17729755-17729774 | None:intergenic | 55.0% | |
| GAGGTTGGCAGCTAAGGAGA+AGG | - | chr8.2:17731154-17731173 | MS.gene033161:intron | 55.0% | |
| GCCAGATGTCCATGTGAAGC+GGG | - | chr8.2:17730579-17730598 | MS.gene033161:CDS | 55.0% | |
| TGCTGGGCATCTCTCTCTTC+GGG | - | chr8.2:17729793-17729812 | MS.gene033161:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.2:17730173-17730192 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.2:17731428-17731447 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.2:17729753-17729772 | MS.gene033161:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.2:17731437-17731456 | None:intergenic | 60.0% | |
| GCCCGCTTCACATGGACATC+TGG | + | chr8.2:17730583-17730602 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAGGCTG+AGG | - | chr8.2:17731160-17731179 | MS.gene033161:intron | 60.0% | |
| CGAACCGTGAGGACAAGGGC+AGG | + | chr8.2:17730777-17730796 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17729647 | 17731505 | 17729647 | ID=MS.gene033161 |
| chr8.2 | mRNA | 17729647 | 17731505 | 17729647 | ID=MS.gene033161.t1;Parent=MS.gene033161 |
| chr8.2 | exon | 17731299 | 17731505 | 17731299 | ID=MS.gene033161.t1.exon1;Parent=MS.gene033161.t1 |
| chr8.2 | CDS | 17731299 | 17731505 | 17731299 | ID=cds.MS.gene033161.t1;Parent=MS.gene033161.t1 |
| chr8.2 | exon | 17730900 | 17731020 | 17730900 | ID=MS.gene033161.t1.exon2;Parent=MS.gene033161.t1 |
| chr8.2 | CDS | 17730900 | 17731020 | 17730900 | ID=cds.MS.gene033161.t1;Parent=MS.gene033161.t1 |
| chr8.2 | exon | 17730701 | 17730792 | 17730701 | ID=MS.gene033161.t1.exon3;Parent=MS.gene033161.t1 |
| chr8.2 | CDS | 17730701 | 17730792 | 17730701 | ID=cds.MS.gene033161.t1;Parent=MS.gene033161.t1 |
| chr8.2 | exon | 17730530 | 17730626 | 17730530 | ID=MS.gene033161.t1.exon4;Parent=MS.gene033161.t1 |
| chr8.2 | CDS | 17730530 | 17730626 | 17730530 | ID=cds.MS.gene033161.t1;Parent=MS.gene033161.t1 |
| chr8.2 | exon | 17729647 | 17730008 | 17729647 | ID=MS.gene033161.t1.exon5;Parent=MS.gene033161.t1 |
| chr8.2 | CDS | 17729647 | 17730008 | 17729647 | ID=cds.MS.gene033161.t1;Parent=MS.gene033161.t1 |
| Gene Sequence |
| Protein sequence |
