Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033163.t1 | RHN63602.1 | 100 | 284 | 0 | 0 | 1 | 284 | 6 | 289 | 2.50E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033163.t1 | Q9FM19 | 89.4 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 2.7e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033163.t1 | G7JPW1 | 100.0 | 284 | 0 | 0 | 1 | 284 | 1 | 284 | 1.8e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033163 | MS.gene029948 | PPI |
| MS.gene033163 | MS.gene030984 | PPI |
| MS.gene033163 | MS.gene028857 | PPI |
| MS.gene033163 | MS.gene043467 | PPI |
| MS.gene033163 | MS.gene20481 | PPI |
| MS.gene31416 | MS.gene033163 | PPI |
| MS.gene033163 | MS.gene055768 | PPI |
| MS.gene033163 | MS.gene59292 | PPI |
| MS.gene033163 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033163.t1 | MTR_4g107720 | 100.000 | 284 | 0 | 0 | 1 | 284 | 1 | 284 | 0.0 | 587 |
| MS.gene033163.t1 | MTR_4g107810 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| MS.gene033163.t1 | MTR_4g107760 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| MS.gene033163.t1 | MTR_4g107830 | 88.294 | 299 | 20 | 1 | 1 | 284 | 1 | 299 | 0.0 | 539 |
| MS.gene033163.t1 | MTR_4g107810 | 94.755 | 286 | 13 | 1 | 1 | 284 | 61 | 346 | 0.0 | 538 |
| MS.gene033163.t1 | MTR_4g107730 | 89.510 | 286 | 24 | 2 | 1 | 284 | 1 | 282 | 0.0 | 504 |
| MS.gene033163.t1 | MTR_6g011380 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.30e-178 | 493 |
| MS.gene033163.t1 | MTR_8g469160 | 80.142 | 282 | 56 | 0 | 1 | 282 | 1 | 282 | 1.39e-176 | 488 |
| MS.gene033163.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 1.05e-115 | 334 |
| MS.gene033163.t1 | MTR_4g107700 | 96.386 | 83 | 3 | 0 | 202 | 284 | 6 | 88 | 4.37e-52 | 165 |
| MS.gene033163.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 161 | 212 | 1 | 65 | 6.42e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033163.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 532 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene033163.t1 | AT3G01290 | 78.092 | 283 | 62 | 0 | 1 | 283 | 1 | 283 | 1.04e-168 | 468 |
| MS.gene033163.t1 | AT5G51570 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 4.55e-120 | 345 |
Find 73 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8.3:-16043216 | MS.gene033163:CDS |
| CTATTCTCATTGCAGTAATC+AGG | 0.273861 | 8.3:-16044064 | MS.gene033163:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8.3:+16043127 | None:intergenic |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8.3:-16044674 | MS.gene033163:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8.3:-16043215 | MS.gene033163:CDS |
| GCGTCATCCAAGTAGAGTTT+TGG | 0.342771 | 8.3:+16044032 | None:intergenic |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.3:-16043888 | MS.gene033163:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8.3:-16044629 | MS.gene033163:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.407086 | 8.3:-16044727 | MS.gene033163:CDS |
| TTCCTGGGAAAACGGATTGC+CGG | 0.420365 | 8.3:-16044658 | MS.gene033163:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.3:-16043306 | MS.gene033163:CDS |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8.3:-16043124 | MS.gene033163:CDS |
| TGCTAAAGATGTCATGGATA+TGG | 0.438467 | 8.3:-16043256 | MS.gene033163:CDS |
| GCCCGCTTCACATGCTCATC+GGG | 0.440215 | 8.3:+16043828 | None:intergenic |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.3:-16043366 | MS.gene033163:CDS |
| TGCCATGGTTCCTGGGAAAA+CGG | 0.457814 | 8.3:-16044666 | MS.gene033163:CDS |
| AGCCCGCTTCACATGCTCAT+CGG | 0.481339 | 8.3:+16043827 | None:intergenic |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.3:-16043439 | MS.gene033163:CDS |
| GCCCGATGAGCATGTGAAGC+GGG | 0.484110 | 8.3:-16043829 | MS.gene033163:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.3:-16044245 | MS.gene033163:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8.3:-16044039 | MS.gene033163:CDS |
| CTCATTAGCTTTGTCTGCCA+AGG | 0.498209 | 8.3:+16044228 | None:intergenic |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.3:+16044682 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8.3:+16044626 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.3:-16043361 | MS.gene033163:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8.3:-16043448 | MS.gene033163:intron |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.3:+16043185 | None:intergenic |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8.3:-16044673 | MS.gene033163:CDS |
| TATTCTCATTGCAGTAATCA+GGG | 0.525164 | 8.3:-16044063 | MS.gene033163:intron |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.3:-16043171 | MS.gene033163:CDS |
| TTTGAAGAAGTGCTTCAGCC+AGG | 0.529505 | 8.3:-16044700 | MS.gene033163:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8.3:+16044591 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.3:-16043327 | MS.gene033163:CDS |
| ACATCTTTAGCACTTGTCCC+TGG | 0.540845 | 8.3:+16043267 | None:intergenic |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8.3:+16044639 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.3:-16043360 | MS.gene033163:CDS |
| GACAAGTGCTAAAGATGTCA+TGG | 0.545051 | 8.3:-16043262 | MS.gene033163:CDS |
| CTTGGCAGACAAAGCTAATG+AGG | 0.548543 | 8.3:-16044227 | MS.gene033163:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.3:-16043388 | MS.gene033163:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8.3:-16043214 | MS.gene033163:CDS |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.3:+16043153 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.3:-16043177 | MS.gene033163:CDS |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.567067 | 8.3:-16044642 | MS.gene033163:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.3:-16043365 | MS.gene033163:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.3:-16044681 | MS.gene033163:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.3:+16043188 | None:intergenic |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8.3:+16043106 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8.3:+16044627 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.3:+16044674 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.585634 | 8.3:-16043807 | MS.gene033163:intron |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8.3:-16043430 | MS.gene033163:CDS |
| TAGCTTTGTCTGCCAAGGCA+CGG | 0.593425 | 8.3:+16044233 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.3:+16043377 | None:intergenic |
| TTTGATCAGCTGCAAGAATG+AGG | 0.600186 | 8.3:-16043452 | MS.gene033163:intron |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.3:-16043997 | MS.gene033163:CDS |
| TCTACAGTGGCTATGAGAGA+AGG | 0.612018 | 8.3:-16044733 | MS.gene033163:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.3:-16043979 | MS.gene033163:intron |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.3:-16044199 | MS.gene033163:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.3:-16044201 | MS.gene033163:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8.3:-16043427 | MS.gene033163:CDS |
| AGCCCGATGAGCATGTGAAG+CGG | 0.638188 | 8.3:-16043830 | MS.gene033163:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.3:-16043394 | MS.gene033163:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.3:-16043331 | MS.gene033163:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8.3:-16043135 | MS.gene033163:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.3:+16043328 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.3:-16043393 | MS.gene033163:CDS |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8.3:-16043123 | MS.gene033163:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.3:+16043317 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.3:-16044602 | MS.gene033163:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.3:+16043162 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.3:-16044200 | MS.gene033163:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8.3:+16043232 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.699512 | 8.3:-16044746 | MS.gene033163:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATTATTTATTGATA+TGG | - | chr8.3:16043935-16043954 | MS.gene033163:intron | 10.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | + | chr8.3:16044169-16044188 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | - | chr8.3:16044174-16044193 | MS.gene033163:CDS | 15.0% |
| !! | AATACTTAATAATAAGAACC+TGG | + | chr8.3:16044281-16044300 | None:intergenic | 20.0% |
| !! | ATAGATAAACATGTAATAAG+TGG | - | chr8.3:16043754-16043773 | MS.gene033163:intron | 20.0% |
| !! | TATGTATGTTATAGACTTAT+TGG | + | chr8.3:16043358-16043377 | None:intergenic | 20.0% |
| ! | ATGGTTATCTATTTCGTTAT+TGG | - | chr8.3:16043466-16043485 | MS.gene033163:intron | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.3:16043706-16043725 | None:intergenic | 25.0% |
| ! | CATATAAAAACAATGTTGTG+AGG | + | chr8.3:16044123-16044142 | None:intergenic | 25.0% |
| ! | CCATAGTTAAGAAAACATAT+AGG | + | chr8.3:16043450-16043469 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | + | chr8.3:16044403-16044422 | None:intergenic | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | - | chr8.3:16043975-16043994 | MS.gene033163:intron | 25.0% |
| ! | TTTACTATTTATTTGCTTGC+AGG | - | chr8.3:16043586-16043605 | MS.gene033163:intron | 25.0% |
| ! | TTTATTGATATGGTGAATTG+TGG | - | chr8.3:16043945-16043964 | MS.gene033163:intron | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | - | chr8.3:16044396-16044415 | MS.gene033163:intron | 25.0% |
| !! | CCTATATGTTTTCTTAACTA+TGG | - | chr8.3:16043447-16043466 | MS.gene033163:intron | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | - | chr8.3:16044664-16044683 | MS.gene033163:CDS | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | - | chr8.3:16044663-16044682 | MS.gene033163:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.3:16043707-16043726 | MS.gene033163:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.3:16043882-16043901 | MS.gene033163:CDS | 30.0% | |
| AATCAAAATAACATAGCTCC+TGG | + | chr8.3:16043427-16043446 | None:intergenic | 30.0% | |
| ATAAGAAAATATGGCAATCC+AGG | + | chr8.3:16044394-16044413 | None:intergenic | 30.0% | |
| ATGTTTATCTATTGCTAAGC+AGG | + | chr8.3:16043746-16043765 | None:intergenic | 30.0% | |
| GAAACATCGTAAATGATACA+AGG | + | chr8.3:16044335-16044354 | None:intergenic | 30.0% | |
| TATAGACTTATTGGTATGCA+TGG | + | chr8.3:16043349-16043368 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTAATCA+GGG | - | chr8.3:16043816-16043835 | MS.gene033163:CDS | 30.0% | |
| TCTATTTCGTTATTGGTATC+AGG | - | chr8.3:16043473-16043492 | MS.gene033163:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.3:16043679-16043698 | MS.gene033163:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.3:16043678-16043697 | MS.gene033163:intron | 30.0% | |
| ! | AAACACTTATTGACCTCTTT+TGG | + | chr8.3:16044190-16044209 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.3:16044595-16044614 | MS.gene033163:intron | 30.0% |
| ! | TAACATACATACCTTCGTTT+TGG | - | chr8.3:16043367-16043386 | MS.gene033163:CDS | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | - | chr8.3:16044665-16044684 | MS.gene033163:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | - | chr8.3:16043277-16043296 | MS.gene033163:CDS | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | + | chr8.3:16043291-16043310 | None:intergenic | 35.0% | |
| ATGATGTACCAAGAGGAAAA+AGG | + | chr8.3:16044221-16044240 | None:intergenic | 35.0% | |
| ATTTATATTAGGCGTCATCC+AGG | - | chr8.3:16043406-16043425 | MS.gene033163:CDS | 35.0% | |
| CCAAATATCTACTTTGTTCC+TGG | - | chr8.3:16044373-16044392 | MS.gene033163:intron | 35.0% | |
| CCAGGAACAAAGTAGATATT+TGG | + | chr8.3:16044376-16044395 | None:intergenic | 35.0% | |
| CTATTCTCATTGCAGTAATC+AGG | - | chr8.3:16043815-16043834 | MS.gene033163:CDS | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.3:16044514-16044533 | MS.gene033163:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.3:16044072-16044091 | MS.gene033163:intron | 35.0% | |
| TAAAATCCTAGCCAAAACGA+AGG | + | chr8.3:16043381-16043400 | None:intergenic | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.3:16043680-16043699 | MS.gene033163:intron | 35.0% | |
| TCGATTGAATTCATGCTGAT+TGG | - | chr8.3:16043562-16043581 | MS.gene033163:intron | 35.0% | |
| TCTATTGCTAAGCAGGTTTA+TGG | + | chr8.3:16043739-16043758 | None:intergenic | 35.0% | |
| TGCTAAAGATGTCATGGATA+TGG | - | chr8.3:16044623-16044642 | MS.gene033163:CDS | 35.0% | |
| ! | AAAACCTACCTTTTTCCTCT+TGG | - | chr8.3:16044210-16044229 | MS.gene033163:CDS | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.3:16044594-16044613 | MS.gene033163:intron | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.3:16044519-16044538 | MS.gene033163:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.3:16044650-16044669 | None:intergenic | 35.0% |
| AAGGGATACGTGTAATATCC+AGG | - | chr8.3:16044260-16044279 | MS.gene033163:CDS | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.3:16044697-16044716 | None:intergenic | 40.0% | |
| AATGTTGTGAGGACATCTCA+CGG | + | chr8.3:16044112-16044131 | None:intergenic | 40.0% | |
| ACATGCATGGACAACTATGA+AGG | - | chr8.3:16044241-16044260 | MS.gene033163:CDS | 40.0% | |
| ATCCAATTGTTGTAGCCGAA+GGG | + | chr8.3:16043255-16043274 | None:intergenic | 40.0% | |
| CAGTGTTCCAAAACTCTACT+TGG | - | chr8.3:16043840-16043859 | MS.gene033163:CDS | 40.0% | |
| CATGCATGGACAACTATGAA+GGG | - | chr8.3:16044242-16044261 | MS.gene033163:CDS | 40.0% | |
| CATGGAATGACATGATGGTT+TGG | + | chr8.3:16043331-16043350 | None:intergenic | 40.0% | |
| CTTGGTACATCATACATGCA+TGG | - | chr8.3:16044228-16044247 | MS.gene033163:CDS | 40.0% | |
| GACAAGTGCTAAAGATGTCA+TGG | - | chr8.3:16044617-16044636 | MS.gene033163:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.3:16044513-16044532 | MS.gene033163:intron | 40.0% | |
| GTATGCATGGAATGACATGA+TGG | + | chr8.3:16043336-16043355 | None:intergenic | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | + | chr8.3:16043256-16043275 | None:intergenic | 40.0% | |
| TGCATGTATGATGTACCAAG+AGG | + | chr8.3:16044228-16044247 | None:intergenic | 40.0% | |
| TGTACCAAGAGGAAAAAGGT+AGG | + | chr8.3:16044217-16044236 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.3:16043900-16043919 | MS.gene033163:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.3:16043634-16043653 | MS.gene033163:intron | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | - | chr8.3:16044427-16044446 | MS.gene033163:intron | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.3:16044518-16044537 | MS.gene033163:intron | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | - | chr8.3:16043133-16043152 | MS.gene033163:CDS | 40.0% |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | + | chr8.3:16043842-16043861 | None:intergenic | 40.0% |
| !!! | TACATACCTTCGTTTTGGCT+AGG | - | chr8.3:16043372-16043391 | MS.gene033163:CDS | 40.0% |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.3:16044440-16044459 | MS.gene033163:intron | 45.0% | |
| ACATCTTTAGCACTTGTCCC+TGG | + | chr8.3:16044615-16044634 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.3:16044431-16044450 | MS.gene033163:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.3:16043991-16044010 | MS.gene033163:CDS | 45.0% | |
| CTTGGCAGACAAAGCTAATG+AGG | - | chr8.3:16043652-16043671 | MS.gene033163:intron | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.3:16044573-16044592 | MS.gene033163:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.3:16044565-16044584 | None:intergenic | 45.0% | |
| TCTACAGTGGCTATGAGAGA+AGG | - | chr8.3:16043146-16043165 | MS.gene033163:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.3:16044702-16044721 | MS.gene033163:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.3:16044486-16044505 | MS.gene033163:intron | 45.0% | |
| ! | GCGTCATCCAAGTAGAGTTT+TGG | + | chr8.3:16043850-16043869 | None:intergenic | 45.0% |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.3:16043152-16043171 | MS.gene033163:CDS | 45.0% |
| !! | CTCATTAGCTTTGTCTGCCA+AGG | + | chr8.3:16043654-16043673 | None:intergenic | 45.0% |
| !! | TTTGAAGAAGTGCTTCAGCC+AGG | - | chr8.3:16043179-16043198 | MS.gene033163:CDS | 45.0% |
| !!! | ATTTTATTTTCATTTATATT+AGG | - | chr8.3:16043395-16043414 | MS.gene033163:CDS | 5.0% |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.3:16044552-16044571 | MS.gene033163:intron | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8.3:16044554-16044573 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | - | chr8.3:16043206-16043225 | MS.gene033163:CDS | 50.0% | |
| CTCCCTTCGGCTACAACAAT+TGG | - | chr8.3:16043250-16043269 | MS.gene033163:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.3:16044485-16044504 | MS.gene033163:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.3:16044694-16044713 | None:intergenic | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | + | chr8.3:16044755-16044774 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.3:16044708-16044727 | MS.gene033163:CDS | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | - | chr8.3:16044744-16044763 | MS.gene033163:CDS | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | - | chr8.3:16044449-16044468 | MS.gene033163:intron | 50.0% | |
| TGCCATGGTTCCTGGGAAAA+CGG | - | chr8.3:16043213-16043232 | MS.gene033163:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.3:16044505-16044524 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | - | chr8.3:16044755-16044774 | MS.gene033163:CDS | 50.0% |
| ! | ATCCGTTTTCCCAGGAACCA+TGG | + | chr8.3:16043218-16043237 | None:intergenic | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | - | chr8.3:16044756-16044775 | MS.gene033163:CDS | 50.0% |
| !! | TAGCTTTGTCTGCCAAGGCA+CGG | + | chr8.3:16043649-16043668 | None:intergenic | 50.0% |
| !! | TTCCTGGGAAAACGGATTGC+CGG | - | chr8.3:16043221-16043240 | MS.gene033163:CDS | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.3:16044491-16044510 | MS.gene033163:intron | 55.0% | |
| AGCCCGATGAGCATGTGAAG+CGG | - | chr8.3:16044049-16044068 | MS.gene033163:CDS | 55.0% | |
| AGCCCGCTTCACATGCTCAT+CGG | + | chr8.3:16044055-16044074 | None:intergenic | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | - | chr8.3:16043198-16043217 | MS.gene033163:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | + | chr8.3:16043200-16043219 | None:intergenic | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | + | chr8.3:16043208-16043227 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | - | chr8.3:16043205-16043224 | MS.gene033163:CDS | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | + | chr8.3:16043243-16043262 | None:intergenic | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8.3:16044548-16044567 | MS.gene033163:intron | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | - | chr8.3:16043237-16043256 | MS.gene033163:CDS | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.3:16044720-16044739 | None:intergenic | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.3:16044729-16044748 | None:intergenic | 60.0% | |
| GCCCGATGAGCATGTGAAGC+GGG | - | chr8.3:16044050-16044069 | MS.gene033163:CDS | 60.0% | |
| GCCCGCTTCACATGCTCATC+GGG | + | chr8.3:16044054-16044073 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | - | chr8.3:16044452-16044471 | MS.gene033163:intron | 60.0% | |
| ! | GACCGGCAATCCGTTTTCCC+AGG | + | chr8.3:16043226-16043245 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16043110 | 16044791 | 16043110 | ID=MS.gene033163 |
| chr8.3 | mRNA | 16043110 | 16044791 | 16043110 | ID=MS.gene033163.t1;Parent=MS.gene033163 |
| chr8.3 | exon | 16044603 | 16044791 | 16044603 | ID=MS.gene033163.t1.exon1;Parent=MS.gene033163.t1 |
| chr8.3 | CDS | 16044603 | 16044791 | 16044603 | ID=cds.MS.gene033163.t1;Parent=MS.gene033163.t1 |
| chr8.3 | exon | 16044173 | 16044293 | 16044173 | ID=MS.gene033163.t1.exon2;Parent=MS.gene033163.t1 |
| chr8.3 | CDS | 16044173 | 16044293 | 16044173 | ID=cds.MS.gene033163.t1;Parent=MS.gene033163.t1 |
| chr8.3 | exon | 16043980 | 16044071 | 16043980 | ID=MS.gene033163.t1.exon3;Parent=MS.gene033163.t1 |
| chr8.3 | CDS | 16043980 | 16044071 | 16043980 | ID=cds.MS.gene033163.t1;Parent=MS.gene033163.t1 |
| chr8.3 | exon | 16043808 | 16043904 | 16043808 | ID=MS.gene033163.t1.exon4;Parent=MS.gene033163.t1 |
| chr8.3 | CDS | 16043808 | 16043904 | 16043808 | ID=cds.MS.gene033163.t1;Parent=MS.gene033163.t1 |
| chr8.3 | exon | 16043110 | 16043465 | 16043110 | ID=MS.gene033163.t1.exon5;Parent=MS.gene033163.t1 |
| chr8.3 | CDS | 16043110 | 16043465 | 16043110 | ID=cds.MS.gene033163.t1;Parent=MS.gene033163.t1 |
| Gene Sequence |
| Protein sequence |
