Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033164.t1 | XP_003608997.2 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 4.20E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033164.t1 | Q6L4S3 | 89.7 | 281 | 29 | 0 | 1 | 281 | 1 | 281 | 2.5e-142 | 506.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033164.t1 | G7JPW8 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 3.0e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31416 | MS.gene033164 | PPI |
| MS.gene20481 | MS.gene033164 | PPI |
| MS.gene033164 | MS.gene59292 | PPI |
| MS.gene043467 | MS.gene033164 | PPI |
| MS.gene033164 | MS.gene029948 | PPI |
| MS.gene033164 | MS.gene030984 | PPI |
| MS.gene033164 | MS.gene028857 | PPI |
| MS.gene033164 | MS.gene055768 | PPI |
| MS.gene68929 | MS.gene033164 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033164.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene033164.t1 | MTR_4g107760 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene033164.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 61 | 346 | 0.0 | 550 |
| MS.gene033164.t1 | MTR_4g107830 | 89.226 | 297 | 17 | 1 | 1 | 282 | 1 | 297 | 0.0 | 543 |
| MS.gene033164.t1 | MTR_4g107720 | 95.035 | 282 | 14 | 0 | 1 | 282 | 1 | 282 | 0.0 | 540 |
| MS.gene033164.t1 | MTR_6g011380 | 82.105 | 285 | 51 | 0 | 1 | 285 | 1 | 285 | 1.79e-178 | 493 |
| MS.gene033164.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 9.55e-178 | 491 |
| MS.gene033164.t1 | MTR_8g469160 | 77.817 | 284 | 63 | 0 | 1 | 284 | 1 | 284 | 2.99e-175 | 485 |
| MS.gene033164.t1 | MTR_6g460470 | 55.749 | 287 | 125 | 1 | 1 | 285 | 1 | 287 | 5.31e-116 | 335 |
| MS.gene033164.t1 | MTR_4g107700 | 98.765 | 81 | 1 | 0 | 202 | 282 | 6 | 86 | 4.63e-51 | 163 |
| MS.gene033164.t1 | MTR_3g093220 | 29.508 | 183 | 123 | 5 | 19 | 199 | 71 | 249 | 6.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033164.t1 | AT5G62740 | 88.298 | 282 | 33 | 0 | 1 | 282 | 1 | 282 | 0.0 | 524 |
| MS.gene033164.t1 | AT3G01290 | 79.787 | 282 | 57 | 0 | 1 | 282 | 1 | 282 | 3.18e-171 | 475 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene033164.t1 | AT5G51570 | 56.294 | 286 | 123 | 1 | 1 | 284 | 1 | 286 | 4.26e-120 | 346 |
Find 62 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.3:-16047807 | MS.gene033164:CDS |
| GCATCATCCAAGTTGAGTTT+TGG | 0.266671 | 8.3:+16048804 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.3:+16047718 | None:intergenic |
| CCTCAGCTCGCTTAATTTGC+AGG | 0.287282 | 8.3:+16047985 | None:intergenic |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 8.3:-16049438 | MS.gene033164:CDS |
| ATGTTCTCATTGCAGTGATT+AGG | 0.311568 | 8.3:-16048836 | MS.gene033164:intron |
| TGTTCTCATTGCAGTGATTA+GGG | 0.312025 | 8.3:-16048835 | MS.gene033164:intron |
| CAACAGGCTATGTCAGCTTA+TGG | 0.321761 | 8.3:-16048661 | MS.gene033164:intron |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 8.3:-16049394 | MS.gene033164:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.3:-16047847 | MS.gene033164:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 8.3:-16049423 | MS.gene033164:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 8.3:-16049492 | MS.gene033164:CDS |
| GCCGCCTTCACATGCTGATC+TGG | 0.418175 | 8.3:+16048601 | None:intergenic |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.3:-16047715 | MS.gene033164:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.3:-16047957 | MS.gene033164:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.3:-16049466 | MS.gene033164:CDS |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 8.3:-16049407 | MS.gene033164:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.3:-16049023 | MS.gene033164:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 8.3:-16049446 | MS.gene033164:CDS |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.3:-16047952 | MS.gene033164:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.3:-16049465 | MS.gene033164:CDS |
| TGTGATCAGCTGCAAGATTG+AGG | 0.516144 | 8.3:-16048043 | MS.gene033164:intron |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.3:+16049447 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.3:+16047776 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.3:-16047762 | MS.gene033164:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.3:-16047918 | MS.gene033164:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 8.3:+16049356 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.3:-16047951 | MS.gene033164:CDS |
| GTGATCAGCTGCAAGATTGA+GGG | 0.554251 | 8.3:-16048042 | MS.gene033164:intron |
| GGTTTGAGAGACAGTGTGAT+CGG | 0.554761 | 8.3:-16047897 | MS.gene033164:CDS |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.3:+16047744 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.3:-16047768 | MS.gene033164:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.3:-16047956 | MS.gene033164:CDS |
| AAGCGTTCCAAAACTCAACT+TGG | 0.571578 | 8.3:-16048811 | MS.gene033164:CDS |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.3:-16047853 | MS.gene033164:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.3:+16047779 | None:intergenic |
| AATTAAGCGAGCTGAGGGTG+AGG | 0.574736 | 8.3:-16047979 | MS.gene033164:CDS |
| GCTATGAATGAAATCAATGC+TGG | 0.578813 | 8.3:-16048580 | MS.gene033164:intron |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 8.3:+16049439 | None:intergenic |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8.3:-16048769 | MS.gene033164:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.3:-16049014 | MS.gene033164:CDS |
| CTGCAAATTAAGCGAGCTGA+GGG | 0.594082 | 8.3:-16047984 | MS.gene033164:CDS |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 8.3:-16049498 | MS.gene033164:CDS |
| GCCAGATCAGCATGTGAAGG+CGG | 0.594901 | 8.3:-16048602 | MS.gene033164:CDS |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.3:+16049006 | None:intergenic |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.3:-16048751 | MS.gene033164:intron |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.3:-16049511 | MS.gene033164:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.3:-16047726 | MS.gene033164:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.3:+16049011 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.624349 | 8.3:-16048979 | MS.gene033164:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 8.3:-16048024 | MS.gene033164:CDS |
| CCTGCAAATTAAGCGAGCTG+AGG | 0.634337 | 8.3:-16047985 | MS.gene033164:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.3:-16047714 | MS.gene033164:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.3:-16047922 | MS.gene033164:CDS |
| AGAGCCAGATCAGCATGTGA+AGG | 0.648209 | 8.3:-16048605 | MS.gene033164:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.3:+16047919 | None:intergenic |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.3:-16049367 | MS.gene033164:intron |
| ACTCATGAGATAGAGAACCC+TGG | 0.652343 | 8.3:+16047697 | None:intergenic |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.3:+16047908 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.3:+16047753 | None:intergenic |
| ATCAGCTGCAAGATTGAGGG+TGG | 0.703805 | 8.3:-16048039 | MS.gene033164:intron |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.3:+16047823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGCAAATTATCTAATA+AGG | - | chr8.3:16048362-16048381 | MS.gene033164:intron | 15.0% |
| !! | GAAATAAGTATAAGAAAATA+TGG | + | chr8.3:16049161-16049180 | None:intergenic | 15.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.3:16047953-16047972 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | - | chr8.3:16047972-16047991 | MS.gene033164:CDS | 15.0% |
| !! | TTATACTTCATACAATATCT+AGG | + | chr8.3:16049059-16049078 | None:intergenic | 20.0% |
| !! | TTTAATATTTATTTGGTTGC+AGG | - | chr8.3:16048158-16048177 | MS.gene033164:intron | 20.0% |
| !! | TTTCATTGCACAAATTATTT+AGG | - | chr8.3:16048932-16048951 | MS.gene033164:intron | 20.0% |
| !!! | ACAAATAGTATTTACTGATT+AGG | - | chr8.3:16048512-16048531 | MS.gene033164:intron | 20.0% |
| !!! | GTCTGGTTTTAATATTTATT+TGG | - | chr8.3:16048151-16048170 | MS.gene033164:intron | 20.0% |
| !!! | TAATTTTGAATCATATCAAC+AGG | - | chr8.3:16048552-16048571 | MS.gene033164:intron | 20.0% |
| ! | ACCAGACAACATTAATTTAA+TGG | + | chr8.3:16048138-16048157 | None:intergenic | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.3:16047944-16047963 | None:intergenic | 25.0% |
| ! | CATATAGAAACAATGTTGTA+GGG | + | chr8.3:16048701-16048720 | None:intergenic | 25.0% |
| ! | CTTATATGTTTGCTTAAGTA+TGG | - | chr8.3:16048024-16048043 | MS.gene033164:CDS | 25.0% |
| ! | TCATATAGAAACAATGTTGT+AGG | + | chr8.3:16048702-16048721 | None:intergenic | 25.0% |
| ! | TCCATTAAATTAATGTTGTC+TGG | - | chr8.3:16048134-16048153 | MS.gene033164:intron | 25.0% |
| ! | TGTGCAATGAAAATAGATTT+AGG | + | chr8.3:16048924-16048943 | None:intergenic | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.3:16049422-16049441 | MS.gene033164:CDS | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.3:16047751-16047770 | MS.gene033164:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.3:16048279-16048298 | MS.gene033164:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.3:16048075-16048094 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAGGTGTCATCT+TGG | - | chr8.3:16047983-16048002 | MS.gene033164:CDS | 25.0% |
| AAAGAAGCAAAACAAACCAA+AGG | + | chr8.3:16048963-16048982 | None:intergenic | 30.0% | |
| AAGAAAATATGGACGAACAA+AGG | + | chr8.3:16049150-16049169 | None:intergenic | 30.0% | |
| AAGAAGCAAAACAAACCAAA+GGG | + | chr8.3:16048962-16048981 | None:intergenic | 30.0% | |
| AATTATTTAGGCATTCCCTT+TGG | - | chr8.3:16048944-16048963 | MS.gene033164:intron | 30.0% | |
| ACATGTATGGAAAACTATTG+AGG | - | chr8.3:16048858-16048877 | MS.gene033164:intron | 30.0% | |
| AGAAAATATGGACGAACAAA+GGG | + | chr8.3:16049149-16049168 | None:intergenic | 30.0% | |
| TACATGTATGACGAACTATA+AGG | + | chr8.3:16048845-16048864 | None:intergenic | 30.0% | |
| TATAGTTCGTCATACATGTA+TGG | - | chr8.3:16048845-16048864 | MS.gene033164:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.3:16048250-16048269 | MS.gene033164:intron | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.3:16049354-16049373 | MS.gene033164:intron | 30.0% |
| ! | TTTTATCTTATTCCCCAAAG+AGG | - | chr8.3:16048758-16048777 | MS.gene033164:CDS | 30.0% |
| !!! | TGGTTTGTTTTGCTTCTTTA+GGG | - | chr8.3:16048964-16048983 | MS.gene033164:CDS | 30.0% |
| !!! | TTGGTTTGTTTTGCTTCTTT+AGG | - | chr8.3:16048963-16048982 | MS.gene033164:CDS | 30.0% |
| AAACACTTCTTGACCTCTTT+GGG | + | chr8.3:16048774-16048793 | None:intergenic | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | - | chr8.3:16048460-16048479 | MS.gene033164:intron | 35.0% | |
| ACGAACTATAAGGAAGGAAA+AGG | + | chr8.3:16048835-16048854 | None:intergenic | 35.0% | |
| ATCATAGCATGACTGTCTAT+TGG | + | chr8.3:16048991-16049010 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | - | chr8.3:16048049-16048068 | MS.gene033164:intron | 35.0% | |
| ATGTTCTCATTGCAGTGATT+AGG | - | chr8.3:16048393-16048412 | MS.gene033164:intron | 35.0% | |
| CATGGAATGACATGAAGATT+TGG | + | chr8.3:16047926-16047945 | None:intergenic | 35.0% | |
| CGAACTATAAGGAAGGAAAA+GGG | + | chr8.3:16048834-16048853 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.3:16049273-16049292 | MS.gene033164:intron | 35.0% | |
| GAAAATATGGACGAACAAAG+GGG | + | chr8.3:16049148-16049167 | None:intergenic | 35.0% | |
| GATATTTGGCATATAGCACT+CGG | + | chr8.3:16049126-16049145 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.3:16048649-16048668 | MS.gene033164:CDS | 35.0% | |
| GGTAATACATAGATCACACA+AGG | + | chr8.3:16049038-16049057 | None:intergenic | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | - | chr8.3:16048333-16048352 | MS.gene033164:intron | 35.0% | |
| TAAACACTTCTTGACCTCTT+TGG | + | chr8.3:16048775-16048794 | None:intergenic | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.3:16047876-16047895 | None:intergenic | 35.0% | |
| TAGACAGTCATGCTATGATA+TGG | - | chr8.3:16048992-16049011 | MS.gene033164:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.3:16049382-16049401 | MS.gene033164:CDS | 35.0% | |
| TGTATGACGAACTATAAGGA+AGG | + | chr8.3:16048841-16048860 | None:intergenic | 35.0% | |
| TGTTCTCATTGCAGTGATTA+GGG | - | chr8.3:16048394-16048413 | MS.gene033164:intron | 35.0% | |
| TTTCTTGGAAAACGAATTGC+TGG | - | chr8.3:16047806-16047825 | MS.gene033164:CDS | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | + | chr8.3:16047803-16047822 | None:intergenic | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.3:16049353-16049372 | MS.gene033164:intron | 35.0% |
| ! | GTTTGTTACTGTCTCAAACT+TGG | - | chr8.3:16047888-16047907 | MS.gene033164:CDS | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.3:16049278-16049297 | MS.gene033164:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.3:16049409-16049428 | None:intergenic | 35.0% |
| AACACTTCTTGACCTCTTTG+GGG | + | chr8.3:16048773-16048792 | None:intergenic | 40.0% | |
| AAGCGTTCCAAAACTCAACT+TGG | - | chr8.3:16048418-16048437 | MS.gene033164:intron | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.3:16049456-16049475 | None:intergenic | 40.0% | |
| AATGTTGTAGGGACATCTCA+CGG | + | chr8.3:16048690-16048709 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.3:16047862-16047881 | MS.gene033164:CDS | 40.0% | |
| CTATAAGGAAGGAAAAGGGT+AGG | + | chr8.3:16048830-16048849 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.3:16049272-16049291 | MS.gene033164:intron | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.3:16048478-16048497 | MS.gene033164:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.3:16048206-16048225 | MS.gene033164:intron | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.3:16049277-16049296 | MS.gene033164:intron | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.3:16047763-16047782 | MS.gene033164:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.3:16047718-16047737 | MS.gene033164:CDS | 40.0% |
| !! | GCATCATCCAAGTTGAGTTT+TGG | + | chr8.3:16048428-16048447 | None:intergenic | 40.0% |
| ACTCATGAGATAGAGAACCC+TGG | + | chr8.3:16049535-16049554 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.3:16048568-16048587 | MS.gene033164:intron | 45.0% | |
| CAAGAAACCATGGCATGCAA+TGG | + | chr8.3:16047793-16047812 | None:intergenic | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | - | chr8.3:16047835-16047854 | MS.gene033164:CDS | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | - | chr8.3:16047791-16047810 | MS.gene033164:CDS | 45.0% | |
| CTGCAAATTAAGCGAGCTGA+GGG | - | chr8.3:16049245-16049264 | MS.gene033164:intron | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.3:16049376-16049395 | MS.gene033164:CDS | 45.0% | |
| GGACGAACAAAGGGGATATT+TGG | + | chr8.3:16049140-16049159 | None:intergenic | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.3:16049514-16049533 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+CGG | - | chr8.3:16049332-16049351 | MS.gene033164:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.3:16049324-16049343 | None:intergenic | 45.0% | |
| GTGATCAGCTGCAAGATTGA+GGG | - | chr8.3:16049187-16049206 | MS.gene033164:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.3:16049503-16049522 | MS.gene033164:CDS | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | + | chr8.3:16049113-16049132 | None:intergenic | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | - | chr8.3:16047731-16047750 | MS.gene033164:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.3:16049461-16049480 | MS.gene033164:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.3:16047866-16047885 | MS.gene033164:CDS | 45.0% | |
| TGTGATCAGCTGCAAGATTG+AGG | - | chr8.3:16049186-16049205 | MS.gene033164:intron | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | - | chr8.3:16047822-16047841 | MS.gene033164:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.3:16047737-16047756 | MS.gene033164:CDS | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.3:16049514-16049533 | MS.gene033164:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.3:16048226-16048245 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.3:16049515-16049534 | MS.gene033164:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.3:16047764-16047783 | MS.gene033164:CDS | 45.0% |
| AATTAAGCGAGCTGAGGGTG+AGG | - | chr8.3:16049250-16049269 | MS.gene033164:intron | 50.0% | |
| AGAGCCAGATCAGCATGTGA+AGG | - | chr8.3:16048624-16048643 | MS.gene033164:CDS | 50.0% | |
| ATCAGCTGCAAGATTGAGGG+TGG | - | chr8.3:16049190-16049209 | MS.gene033164:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.3:16049311-16049330 | MS.gene033164:intron | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8.3:16049313-16049332 | None:intergenic | 50.0% | |
| CCTGCAAATTAAGCGAGCTG+AGG | - | chr8.3:16049244-16049263 | MS.gene033164:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.3:16049453-16049472 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.3:16049467-16049486 | MS.gene033164:CDS | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.3:16049374-16049393 | None:intergenic | 50.0% |
| !! | CCTCAGCTCGCTTAATTTGC+AGG | + | chr8.3:16049247-16049266 | None:intergenic | 50.0% |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.3:16048215-16048234 | MS.gene033164:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.3:16047785-16047804 | None:intergenic | 55.0% | |
| GCCAGATCAGCATGTGAAGG+CGG | - | chr8.3:16048627-16048646 | MS.gene033164:CDS | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8.3:16049307-16049326 | MS.gene033164:intron | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.3:16048221-16048240 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.3:16049479-16049498 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.3:16047783-16047802 | MS.gene033164:CDS | 60.0% | |
| GAGGGTGGCAGCGAATGAGA+AGG | - | chr8.3:16049205-16049224 | MS.gene033164:intron | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.3:16049488-16049507 | None:intergenic | 60.0% | |
| GCCGCCTTCACATGCTGATC+TGG | + | chr8.3:16048631-16048650 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16047695 | 16049556 | 16047695 | ID=MS.gene033164 |
| chr8.3 | mRNA | 16047695 | 16049556 | 16047695 | ID=MS.gene033164.t1;Parent=MS.gene033164 |
| chr8.3 | exon | 16049368 | 16049556 | 16049368 | ID=MS.gene033164.t1.exon1;Parent=MS.gene033164.t1 |
| chr8.3 | CDS | 16049368 | 16049556 | 16049368 | ID=cds.MS.gene033164.t1;Parent=MS.gene033164.t1 |
| chr8.3 | exon | 16048951 | 16049071 | 16048951 | ID=MS.gene033164.t1.exon2;Parent=MS.gene033164.t1 |
| chr8.3 | CDS | 16048951 | 16049071 | 16048951 | ID=cds.MS.gene033164.t1;Parent=MS.gene033164.t1 |
| chr8.3 | exon | 16048752 | 16048843 | 16048752 | ID=MS.gene033164.t1.exon3;Parent=MS.gene033164.t1 |
| chr8.3 | CDS | 16048752 | 16048843 | 16048752 | ID=cds.MS.gene033164.t1;Parent=MS.gene033164.t1 |
| chr8.3 | exon | 16048581 | 16048677 | 16048581 | ID=MS.gene033164.t1.exon4;Parent=MS.gene033164.t1 |
| chr8.3 | CDS | 16048581 | 16048677 | 16048581 | ID=cds.MS.gene033164.t1;Parent=MS.gene033164.t1 |
| chr8.3 | exon | 16047695 | 16048056 | 16047695 | ID=MS.gene033164.t1.exon5;Parent=MS.gene033164.t1 |
| chr8.3 | CDS | 16047695 | 16048056 | 16047695 | ID=cds.MS.gene033164.t1;Parent=MS.gene033164.t1 |
| Gene Sequence |
| Protein sequence |
