AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034290.t1 MTR_4g005330 99.346 306 2 0 42 347 56 361 0.0 627
MS.gene034290.t1 MTR_4g005330 99.322 295 2 0 53 347 1 295 0.0 598
MS.gene034290.t1 MTR_1g012030 41.297 293 154 3 49 340 136 411 1.86e-74 236
MS.gene034290.t1 MTR_3g107510 40.956 293 155 4 49 340 119 394 9.79e-73 231
MS.gene034290.t1 MTR_4g114320 38.689 305 168 4 37 340 109 395 5.34e-72 229
MS.gene034290.t1 MTR_2g436930 29.102 323 177 8 54 339 17 324 6.31e-36 133
MS.gene034290.t1 MTR_5g009500 27.744 328 188 8 50 346 36 345 2.38e-34 129
MS.gene034290.t1 MTR_5g009500 29.437 231 143 7 130 343 1 228 5.83e-15 75.5
MS.gene034290.t1 MTR_4g119770 27.327 333 188 8 46 339 8 325 2.70e-34 129
MS.gene034290.t1 MTR_3g104600 28.213 319 174 9 49 336 32 326 2.96e-34 129
MS.gene034290.t1 MTR_8g096050 30.693 303 166 10 50 336 225 499 5.43e-34 131
MS.gene034290.t1 MTR_8g096050 29.609 179 118 3 164 338 228 402 2.67e-14 73.9
MS.gene034290.t1 MTR_8g027975 28.267 329 187 8 50 346 49 360 9.79e-34 128
MS.gene034290.t1 MTR_8g027975 28.696 230 139 6 131 347 28 245 3.11e-15 76.3
MS.gene034290.t1 MTR_3g098460 29.003 331 196 11 29 342 175 483 1.17e-33 130
MS.gene034290.t1 MTR_7g084400 29.139 302 181 8 50 342 211 488 1.34e-29 119
MS.gene034290.t1 MTR_6g091800 25.079 315 190 9 50 341 17 308 4.46e-29 114
MS.gene034290.t1 MTR_7g068340 29.268 287 165 8 63 339 98 356 9.30e-29 115
MS.gene034290.t1 MTR_7g068340 23.958 192 125 2 49 240 184 354 1.41e-12 68.6
MS.gene034290.t1 MTR_7g064980 25.733 307 198 6 49 339 22 314 1.43e-28 113
MS.gene034290.t1 MTR_2g436930 31.048 248 136 6 112 339 2 234 5.49e-28 109
MS.gene034290.t1 MTR_2g436930 24.378 201 126 3 52 236 38 228 3.12e-14 71.6
MS.gene034290.t1 MTR_1g097890 29.231 325 186 10 23 339 16 304 1.33e-27 110
MS.gene034290.t1 MTR_5g081150 25.987 304 199 6 49 339 31 321 6.52e-27 108
MS.gene034290.t1 MTR_8g090210 26.452 310 186 6 54 342 112 400 2.38e-26 108
MS.gene034290.t1 MTR_6g091800 24.611 321 208 8 50 341 17 332 3.03e-26 107
MS.gene034290.t1 MTR_4g119770 26.966 267 151 7 46 283 8 259 2.21e-25 103
MS.gene034290.t1 MTR_4g119770 25.641 195 119 4 165 336 16 207 7.13e-14 71.2
MS.gene034290.t1 MTR_3g074490 25.484 310 189 6 54 342 118 406 4.21e-25 105
MS.gene034290.t1 MTR_7g109135 29.739 306 174 10 54 340 24 307 1.12e-24 102
MS.gene034290.t1 MTR_7g109135 28.426 197 125 5 162 343 21 216 1.85e-12 67.8
MS.gene034290.t1 MTR_7g109135 29.431 299 177 9 54 340 24 300 9.91e-24 99.8
MS.gene034290.t1 MTR_6g091800 25.591 254 146 8 50 283 17 247 3.72e-23 97.4
MS.gene034290.t1 MTR_6g091800 26.842 190 116 6 165 336 22 206 4.98e-11 62.8
MS.gene034290.t1 MTR_6g091800 25.591 254 146 8 50 283 17 247 4.39e-23 97.1
MS.gene034290.t1 MTR_6g091800 26.842 190 116 6 165 336 22 206 3.83e-11 63.2
MS.gene034290.t1 MTR_6g034145 24.275 276 168 8 85 341 1 254 5.75e-23 96.7
MS.gene034290.t1 MTR_4g016730 27.215 316 189 10 34 339 71 355 9.07e-23 98.2
MS.gene034290.t1 MTR_8g092080 28.247 308 176 11 41 343 42 309 2.16e-22 96.3
MS.gene034290.t1 MTR_6g091800 24.013 304 197 8 50 324 17 315 1.09e-21 94.4
MS.gene034290.t1 MTR_6g092210 22.878 271 172 6 85 341 1 248 1.63e-21 92.4
MS.gene034290.t1 MTR_3g104500 26.045 311 183 11 50 336 32 319 1.77e-20 90.9
MS.gene034290.t1 MTR_6g091800 25.000 260 164 7 50 283 17 271 2.43e-20 90.1
MS.gene034290.t1 MTR_6g091800 25.000 260 164 7 50 283 17 271 2.62e-20 90.1
MS.gene034290.t1 MTR_1g087840 28.082 292 173 8 66 340 33 304 7.33e-19 86.3
MS.gene034290.t1 MTR_8g076760 25.685 292 173 7 66 333 28 299 5.92e-18 83.6
MS.gene034290.t1 MTR_5g073040 24.172 302 192 8 51 339 37 314 1.87e-17 82.4
MS.gene034290.t1 MTR_8g098240 24.080 299 193 6 54 345 322 593 1.14e-16 81.6
MS.gene034290.t1 MTR_7g084400 27.753 227 141 6 50 270 205 414 1.56e-16 80.5
MS.gene034290.t1 MTR_7g084400 26.842 190 126 4 164 344 208 393 1.75e-13 71.2
MS.gene034290.t1 MTR_6g091910 27.979 193 119 6 165 341 22 210 1.95e-16 77.4
MS.gene034290.t1 MTR_7g109135 29.084 251 145 8 101 340 1 229 2.75e-16 77.8
MS.gene034290.t1 MTR_2g098070 24.111 253 166 5 83 327 107 341 7.87e-16 78.2
MS.gene034290.t1 MTR_4g012850 23.333 300 203 5 42 333 6 286 8.99e-16 77.4
MS.gene034290.t1 MTR_3g028590 23.667 300 187 7 49 327 90 368 2.84e-15 76.6
MS.gene034290.t1 MTR_3g028590 23.667 300 187 7 49 327 94 372 3.21e-15 76.6
MS.gene034290.t1 MTR_7g109135 30.986 213 120 7 139 340 12 208 4.89e-15 73.6
MS.gene034290.t1 MTR_6g034515 25.430 291 172 7 62 336 77 338 5.06e-15 75.9
MS.gene034290.t1 MTR_4g078545 23.826 298 185 7 51 327 74 350 5.32e-15 75.5
MS.gene034290.t1 MTR_1g095780 26.027 292 174 11 49 333 522 778 6.96e-15 76.3
MS.gene034290.t1 MTR_8g107270 23.077 312 172 10 50 327 16 293 7.25e-15 74.7
MS.gene034290.t1 MTR_8g036880 23.411 299 186 7 51 327 101 378 3.39e-14 73.6
MS.gene034290.t1 MTR_5g055410 27.018 285 171 11 66 333 35 299 1.31e-13 71.2
MS.gene034290.t1 MTR_5g081910 22.476 307 186 11 65 333 21 313 2.05e-13 70.9
MS.gene034290.t1 MTR_2g032610 24.000 300 197 9 38 321 17 301 1.57e-12 67.8
MS.gene034290.t1 MTR_7g015870 27.473 182 114 4 164 332 22 198 2.77e-12 67.4
MS.gene034290.t1 MTR_7g015870 23.826 298 185 8 39 315 10 286 4.27e-11 63.5
MS.gene034290.t1 MTR_7g015870 27.473 182 114 4 164 332 26 202 2.95e-12 67.0
MS.gene034290.t1 MTR_5g081150 23.377 231 154 5 49 269 31 248 5.47e-12 65.5
MS.gene034290.t1 MTR_5g081150 23.377 231 154 5 49 269 31 248 5.70e-12 65.5
MS.gene034290.t1 MTR_3g025800 25.641 312 192 9 50 333 26 325 6.39e-12 66.2
MS.gene034290.t1 MTR_8g066975 25.926 189 126 3 164 339 109 296 1.15e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034290.t1 AT3G20240 75.585 299 73 0 42 340 42 340 4.35e-173 485
MS.gene034290.t1 AT4G32400 39.249 293 160 3 49 340 111 386 5.24e-70 224
MS.gene034290.t1 AT3G21390 29.429 333 177 10 46 337 13 328 7.89e-35 130
MS.gene034290.t1 AT3G21390 29.429 333 177 10 46 337 35 350 8.46e-35 130
MS.gene034290.t1 AT4G01100 29.394 330 182 11 50 346 40 351 3.59e-33 126
MS.gene034290.t1 AT4G01100 28.431 204 130 5 153 343 32 232 2.81e-15 76.3
MS.gene034290.t1 AT5G48970 28.144 334 185 10 46 339 16 334 5.11e-32 123
MS.gene034290.t1 AT4G01100 29.154 319 175 10 61 346 1 301 1.27e-31 121
MS.gene034290.t1 AT3G53940 27.687 307 190 8 49 339 70 360 2.66e-31 121
MS.gene034290.t1 AT4G01100 27.616 344 184 11 50 346 40 365 7.89e-31 120
MS.gene034290.t1 AT4G01100 28.899 218 125 7 153 343 32 246 7.72e-15 75.1
MS.gene034290.t1 AT3G55640 28.239 301 186 7 51 336 37 322 6.54e-30 117
MS.gene034290.t1 AT3G55640 28.239 301 186 7 51 336 37 322 6.54e-30 117
MS.gene034290.t1 AT5G51050 28.523 298 178 7 52 339 223 495 7.76e-30 119
MS.gene034290.t1 AT3G51870 29.655 290 168 8 63 343 102 364 1.45e-29 117
MS.gene034290.t1 AT5G48970 29.044 272 155 7 91 339 7 263 6.99e-28 110
MS.gene034290.t1 AT5G48970 28.218 202 120 8 52 236 64 257 4.59e-14 72.0
MS.gene034290.t1 AT2G37890 25.574 305 197 8 50 339 43 332 7.35e-27 108
MS.gene034290.t1 AT2G37890 29.032 217 116 7 149 336 23 230 2.64e-12 67.4
MS.gene034290.t1 AT1G34065 28.966 290 172 8 50 339 73 328 2.38e-26 107
MS.gene034290.t1 AT5G61810 27.090 299 182 7 52 342 65 335 3.20e-26 107
MS.gene034290.t1 AT1G34065 28.621 290 173 6 50 339 80 335 3.25e-26 107
MS.gene034290.t1 AT5G61810 27.425 299 181 8 52 342 208 478 7.33e-26 108
MS.gene034290.t1 AT5G01500 28.223 287 168 8 63 339 130 388 9.36e-26 107
MS.gene034290.t1 AT5G64970 25.890 309 187 6 55 342 14 301 1.08e-24 102
MS.gene034290.t1 AT5G64970 26.667 330 189 8 45 342 117 425 1.77e-24 103
MS.gene034290.t1 AT1G14560 27.243 301 171 8 63 336 38 317 2.54e-24 102
MS.gene034290.t1 AT4G26180 24.679 312 186 9 50 336 19 306 1.10e-23 100
MS.gene034290.t1 AT1G78180 27.508 309 184 5 54 342 130 418 1.34e-23 101
MS.gene034290.t1 AT5G07320 27.526 287 170 8 59 336 216 473 2.78e-21 95.1
MS.gene034290.t1 AT1G14560 26.923 286 161 8 63 321 38 302 1.58e-20 90.9
MS.gene034290.t1 AT1G14560 26.404 178 113 5 176 336 40 216 5.00e-11 63.5
MS.gene034290.t1 AT4G26180 24.242 297 176 9 50 321 19 291 1.94e-20 90.5
MS.gene034290.t1 AT4G26180 26.396 197 129 6 155 336 13 208 8.33e-13 68.6
MS.gene034290.t1 AT5G66380 26.490 302 181 7 54 333 12 294 9.08e-20 89.0
MS.gene034290.t1 AT5G66380 26.154 195 135 3 154 340 1 194 5.55e-13 69.3
MS.gene034290.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene034290.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene034290.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene034290.t1 AT1G14560 28.426 197 114 4 164 336 26 219 1.57e-19 86.7
MS.gene034290.t1 AT4G11440 25.581 301 188 8 50 339 328 603 1.34e-18 87.4
MS.gene034290.t1 AT4G11440 27.368 190 117 3 163 344 330 506 2.00e-11 65.5
MS.gene034290.t1 AT4G11440 25.581 301 188 8 50 339 328 603 1.34e-18 87.4
MS.gene034290.t1 AT4G11440 27.368 190 117 3 163 344 330 506 2.00e-11 65.5
MS.gene034290.t1 AT5G64970 25.890 309 176 8 45 321 117 404 2.52e-18 85.9
MS.gene034290.t1 AT5G17400 25.379 264 145 6 85 327 57 289 4.89e-18 84.0
MS.gene034290.t1 AT2G47490 27.946 297 170 10 66 342 31 303 1.45e-17 82.4
MS.gene034290.t1 AT1G07030 24.671 304 189 8 51 339 38 316 1.61e-17 82.8
MS.gene034290.t1 AT4G28390 24.832 298 182 7 51 327 82 358 2.48e-17 82.8
MS.gene034290.t1 AT4G28390 24.832 298 182 7 51 327 82 358 2.48e-17 82.8
MS.gene034290.t1 AT3G53940 26.923 234 142 7 49 269 70 287 1.13e-16 79.7
MS.gene034290.t1 AT3G53940 30.457 197 101 6 164 336 74 258 2.23e-13 70.1
MS.gene034290.t1 AT4G03115 25.418 299 189 9 49 338 67 340 1.72e-16 79.7
MS.gene034290.t1 AT4G03115 25.418 299 189 9 49 338 35 308 2.40e-16 79.0
MS.gene034290.t1 AT1G25380 26.183 317 187 11 40 333 8 300 4.18e-16 79.0
MS.gene034290.t1 AT1G25380 26.183 317 187 11 40 333 8 300 4.18e-16 79.0
MS.gene034290.t1 AT3G08580 22.742 299 188 6 51 327 83 360 6.45e-16 78.6
MS.gene034290.t1 AT3G08580 22.742 299 188 6 51 327 83 360 6.45e-16 78.6
MS.gene034290.t1 AT2G30160 23.588 301 194 7 53 339 43 321 7.46e-16 77.8
MS.gene034290.t1 AT5G13490 23.746 299 185 7 51 327 87 364 8.19e-16 78.2
MS.gene034290.t1 AT5G13490 23.746 299 185 7 51 327 87 364 8.19e-16 78.2
MS.gene034290.t1 AT5G56450 23.899 318 190 12 50 339 32 325 1.25e-15 77.0
MS.gene034290.t1 AT3G55640 26.840 231 142 6 51 269 37 252 2.81e-15 75.1
MS.gene034290.t1 AT3G55640 26.840 231 142 6 51 269 37 252 2.81e-15 75.1
MS.gene034290.t1 AT2G35800 25.087 287 182 7 53 336 546 802 3.17e-15 77.4
MS.gene034290.t1 AT4G03115 26.217 267 164 8 80 338 4 245 1.64e-14 72.8
MS.gene034290.t1 AT4G03115 26.172 256 160 7 87 338 7 237 2.06e-14 72.4
MS.gene034290.t1 AT5G42130 26.712 292 168 9 62 336 128 390 4.78e-13 70.1
MS.gene034290.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene034290.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene034290.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene034290.t1 AT5G15640 27.174 184 126 5 164 339 22 205 5.12e-12 66.2
MS.gene034290.t1 AT5G15640 27.174 184 126 5 164 339 29 212 5.73e-12 66.2
MS.gene034290.t1 AT2G17270 23.311 296 184 8 53 336 23 287 7.62e-12 65.9
MS.gene034290.t1 AT2G39970 22.654 309 179 11 68 333 24 315 2.51e-11 64.3
MS.gene034290.t1 AT1G79900 27.879 165 102 2 53 217 111 258 5.90e-11 63.2
MS.gene034290.t1 AT1G72820 22.781 338 205 8 38 338 19 337 7.20e-11 63.2
MS.gene034290.t1 AT1G72820 22.781 338 205 8 38 338 19 337 7.20e-11 63.2

Find 99 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTGCAGCGCCCAAATT+AGG 0.183331 4.3:+89251094 None:intergenic
TCCTGAGATATACCCTAATT+TGG 0.186592 4.3:-89251107 MS.gene034290:CDS
TAAAGACAAGCTCAAATTAA+TGG 0.263095 4.3:+89251872 None:intergenic
TAGATACCTTCAAAACTTCT+AGG 0.264996 4.3:+89251781 None:intergenic
TTGGGGTGCAAGCTGTTTAA+AGG 0.279423 4.3:-89250237 MS.gene034290:CDS
CGTCCGGAGATGCTTATAAT+TGG 0.312484 4.3:-89250920 MS.gene034290:CDS
ATTTGAGCTTGTCTTTATCT+TGG 0.318265 4.3:-89251866 MS.gene034290:CDS
ATTTCACCAACTGCCGTGGC+TGG 0.322741 4.3:-89251843 MS.gene034290:CDS
TCATCCCTATTAGGACTATA+AGG 0.340097 4.3:+89250139 None:intergenic
GAAGGGTCTTTACAGAGGTT+GGG 0.340231 4.3:-89250255 MS.gene034290:CDS
CCAACACAAGCCATTGAGTT+TGG 0.342313 4.3:-89251978 MS.gene034290:CDS
CTTATAATTGGAGCTCTATC+AGG 0.362802 4.3:-89250908 MS.gene034290:intron
TTTATGAGCGGCGCCCTAGC+TGG 0.370801 4.3:-89252964 MS.gene034290:CDS
TATCGCAGGTAGTTTCGTTC+AGG 0.376359 4.3:-89252066 MS.gene034290:CDS
TAATTGCAGCGCCCAAATTA+GGG 0.384769 4.3:+89251095 None:intergenic
GACAATGCTGCTGCCATGTT+TGG 0.394490 4.3:+89250302 None:intergenic
TGAAGGGTCTTTACAGAGGT+TGG 0.398624 4.3:-89250256 MS.gene034290:CDS
ACTATAAGGAAATACCCTTC+TGG 0.401410 4.3:+89250153 None:intergenic
ATTAGAAATATTTATAAAGA+TGG 0.401453 4.3:-89251076 MS.gene034290:CDS
TGGCATCACTGCAAGAGAAA+TGG 0.402783 4.3:-89251929 MS.gene034290:CDS
TACATTTGAATGGACAAAAC+GGG 0.404800 4.3:-89251955 MS.gene034290:CDS
GCCGTGGCTGGGGCAGCTGC+AGG 0.409924 4.3:-89251831 MS.gene034290:CDS
TTGAGTTTGGTACATTTGAA+TGG 0.413507 4.3:-89251965 MS.gene034290:CDS
TTTCACCAACTGCCGTGGCT+GGG 0.413889 4.3:-89251842 MS.gene034290:CDS
GTCATACATGAAATAATAAC+AGG 0.422261 4.3:+89250991 None:intergenic
CGTTCAGGTTGTAGATCAGC+AGG 0.424658 4.3:-89252051 MS.gene034290:CDS
GCTGCCCCAGCCACGGCAGT+TGG 0.433783 4.3:+89251837 None:intergenic
CAAAAGAGCAATGGTGTGTT+TGG 0.435659 4.3:-89253179 None:intergenic
CCTGAGATATACCCTAATTT+GGG 0.436195 4.3:-89251106 MS.gene034290:CDS
ATGGAACCTATCTGCAACTT+AGG 0.439878 4.3:+89251891 None:intergenic
TACAATTAGCTTTCCATTGG+AGG 0.442855 4.3:-89250372 MS.gene034290:CDS
GGTTTATCACCTACTCTAGT+TGG 0.445522 4.3:-89251031 MS.gene034290:CDS
TTGCTCCTCTTGAAACCATC+AGG 0.447108 4.3:-89252921 MS.gene034290:intron
TAAGAAGTCTTTAAATCGTC+CGG 0.453829 4.3:-89250936 MS.gene034290:CDS
TTCACCAACTGCCGTGGCTG+GGG 0.454352 4.3:-89251841 MS.gene034290:CDS
AAGGGTCTTTACAGAGGTTG+GGG 0.458582 4.3:-89250254 MS.gene034290:CDS
GGCATCACTGCAAGAGAAAT+GGG 0.459269 4.3:-89251928 MS.gene034290:CDS
TGAAGCATGGAAAGACATAC+TGG 0.469349 4.3:-89250180 MS.gene034290:CDS
AATGCTGCTGCCATGTTTGG+TGG 0.471036 4.3:+89250305 None:intergenic
AAATAATAACAGGTACTGTA+TGG 0.474057 4.3:+89251001 None:intergenic
GAAGAATATCAACATCTTTG+AGG 0.478085 4.3:+89253141 None:intergenic
AGATACCTTCAAAACTTCTA+GGG 0.482964 4.3:+89251782 None:intergenic
AGCAGGGATGGCAAGGATTG+TGG 0.485061 4.3:-89252034 MS.gene034290:CDS
GCAGGGATGGCAAGGATTGT+GGG 0.490569 4.3:-89252033 MS.gene034290:CDS
TCGGAAGTTATTCGAGAAGA+AGG 0.493790 4.3:-89250281 MS.gene034290:CDS
TTCATCATGCAGGACAAGAA+TGG 0.493874 4.3:-89252111 MS.gene034290:intron
ATTTATAAAGATGGTGGTAT+CGG 0.495173 4.3:-89251067 MS.gene034290:CDS
ACAAGAATGGTAGTTGGTGT+TGG 0.501019 4.3:-89252098 MS.gene034290:CDS
GAATCTCCTAAGTTGCAGAT+AGG 0.503313 4.3:-89251897 MS.gene034290:CDS
CAATGGAAAGCTAATTGTAC+TGG 0.505502 4.3:+89250376 None:intergenic
TTAAAGGTAATGCCATCCTC+TGG 0.506130 4.3:-89250221 MS.gene034290:CDS
GTACATTTGAATGGACAAAA+CGG 0.506453 4.3:-89251956 MS.gene034290:CDS
CAAGAATGGTAGTTGGTGTT+GGG 0.507620 4.3:-89252097 MS.gene034290:CDS
TTCAAATGTACCAAACTCAA+TGG 0.510520 4.3:+89251968 None:intergenic
CTTTAGTCATAGCACCAGCT+AGG 0.513529 4.3:+89252950 None:intergenic
TCCTGCAGCTGCCCCAGCCA+CGG 0.515973 4.3:+89251830 None:intergenic
AGAAATATTTATAAAGATGG+TGG 0.518327 4.3:-89251073 MS.gene034290:CDS
CGCTTTCTAGCTACCTCCAA+TGG 0.519539 4.3:+89250359 None:intergenic
AGTTGAAATCGAAAAGCGTT+GGG 0.531400 4.3:+89253119 None:intergenic
GCTCCAATTATAAGCATCTC+CGG 0.531439 4.3:+89250917 None:intergenic
CCCAAATTAGGGTATATCTC+AGG 0.532002 4.3:+89251106 None:intergenic
CCATGCTTCATAAAACATCC+AGG 0.533125 4.3:+89250193 None:intergenic
AGCTAGAAAGCGTCTGATGG+TGG 0.543913 4.3:-89250348 MS.gene034290:CDS
CAGTACAATTAGCTTTCCAT+TGG 0.546144 4.3:-89250375 MS.gene034290:CDS
ATGCTGCTGCCATGTTTGGT+GGG 0.550249 4.3:+89250306 None:intergenic
AAACATGGCAGCAGCATTGT+CGG 0.551336 4.3:-89250300 MS.gene034290:CDS
GAGAGTAGACCACCTGTGCT+TGG 0.551350 4.3:+89253090 None:intergenic
TTTAGTCATAGCACCAGCTA+GGG 0.554550 4.3:+89252951 None:intergenic
AGACATACTGGTTGTCCAGA+AGG 0.558329 4.3:-89250168 MS.gene034290:CDS
TCAACTTCCTCACCAAGCAC+AGG 0.561063 4.3:-89253102 MS.gene034290:CDS
AGGTAAGTGCCCACCAAACA+TGG 0.561890 4.3:-89250315 MS.gene034290:CDS
TGCCATCCTCTGGAATCACC+TGG 0.566309 4.3:-89250211 MS.gene034290:CDS
TTGGATTTCACCAACTGCCG+TGG 0.569562 4.3:-89251847 MS.gene034290:CDS
TATTCGAGAAGAAGGTCTGA+AGG 0.569713 4.3:-89250273 MS.gene034290:CDS
CCTTCAAAACTTCTAGGGGA+TGG 0.570273 4.3:+89251787 None:intergenic
GGATGGCAAGGATTGTGGGC+TGG 0.572479 4.3:-89252029 MS.gene034290:CDS
TGCAGGACAAGAATGGTAGT+TGG 0.573463 4.3:-89252104 MS.gene034290:intron
GACATACTGGTTGTCCAGAA+GGG 0.578877 4.3:-89250167 MS.gene034290:CDS
GCTAGAAAGCGTCTGATGGT+GGG 0.582168 4.3:-89250347 MS.gene034290:CDS
AAGTTGAAATCGAAAAGCGT+TGG 0.582771 4.3:+89253118 None:intergenic
ATCCAGGTGATTCCAGAGGA+TGG 0.584233 4.3:+89250209 None:intergenic
GTAGATCAGCAGGGATGGCA+AGG 0.584481 4.3:-89252041 MS.gene034290:CDS
AGGTTGTAGATCAGCAGGGA+TGG 0.590078 4.3:-89252046 MS.gene034290:CDS
GGAAGCATGCCAACTAGAGT+AGG 0.599614 4.3:+89251022 None:intergenic
CCAAACTCAATGGCTTGTGT+TGG 0.604946 4.3:+89251978 None:intergenic
ACTTCCTCACCAAGCACAGG+TGG 0.611864 4.3:-89253099 MS.gene034290:CDS
GGTAGCTAGAAAGCGTCTGA+TGG 0.619276 4.3:-89250351 MS.gene034290:CDS
CTGATGGTGGGAGCATTGCA+AGG 0.621069 4.3:-89250335 MS.gene034290:CDS
TAGACCACCTGTGCTTGGTG+AGG 0.642246 4.3:+89253095 None:intergenic
GATACCTTCAAAACTTCTAG+GGG 0.646053 4.3:+89251783 None:intergenic
GTTCAGGTTGTAGATCAGCA+GGG 0.653008 4.3:-89252050 MS.gene034290:CDS
GAATACCTGATGGTTTCAAG+AGG 0.653503 4.3:+89252916 None:intergenic
ACATTTGAATGGACAAAACG+GGG 0.656176 4.3:-89251954 MS.gene034290:CDS
ATTCGAGAAGAAGGTCTGAA+GGG 0.664756 4.3:-89250272 MS.gene034290:CDS
GTTGGGTCGAGAAATATCGC+AGG 0.665608 4.3:-89252080 MS.gene034290:CDS
GAAGTTCGTGAGTTTATGAG+CGG 0.674510 4.3:-89252976 MS.gene034290:CDS
AAACATCCAGGTGATTCCAG+AGG 0.681339 4.3:+89250205 None:intergenic
GGTCTGAAGGGTCTTTACAG+AGG 0.690226 4.3:-89250260 MS.gene034290:CDS
CATTTGAATGGACAAAACGG+GGG 0.732483 4.3:-89251953 MS.gene034290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAATATTTATAAAGA+TGG - chr4.3:89252247-89252266 MS.gene034290:intron 10.0%
!!! TGATAGATTTTTATATATAA+AGG + chr4.3:89250498-89250517 None:intergenic 10.0%
!! AAATAATTAATGACAGATAA+GGG - chr4.3:89251946-89251965 MS.gene034290:CDS 15.0%
!! ATTTATATAGTGAAACAATT+AGG - chr4.3:89251834-89251853 MS.gene034290:CDS 15.0%
!! TAAATTGTATAAATTGTCTT+TGG - chr4.3:89251608-89251627 MS.gene034290:intron 15.0%
!!! CTTGACAATTTTTTTTTAAT+CGG + chr4.3:89252697-89252716 None:intergenic 15.0%
!! AAATGATTAATGAGAGATAA+GGG - chr4.3:89251972-89251991 MS.gene034290:CDS 20.0%
!! AATGATGTAAAATCTAAGTA+AGG - chr4.3:89251120-89251139 MS.gene034290:CDS 20.0%
!! ACTTAAAACGACATTTATTA+AGG - chr4.3:89252015-89252034 MS.gene034290:CDS 20.0%
!! AGAAATATTTATAAAGATGG+TGG - chr4.3:89252250-89252269 MS.gene034290:intron 20.0%
!! ATATGTCATTAACTTTACTT+CGG - chr4.3:89251864-89251883 MS.gene034290:CDS 20.0%
!! CAAATAATTAATGACAGATA+AGG - chr4.3:89251945-89251964 MS.gene034290:CDS 20.0%
!! CCGTTGAAAAATAATAAAAA+CGG + chr4.3:89251677-89251696 None:intergenic 20.0%
!! CGATTAAAAAAAAATTGTCA+AGG - chr4.3:89252695-89252714 MS.gene034290:intron 20.0%
!! GATAATAAATACAAAAGTTG+TGG + chr4.3:89250933-89250952 None:intergenic 20.0%
!!! CCGTTTTTATTATTTTTCAA+CGG - chr4.3:89251674-89251693 MS.gene034290:intron 20.0%
!!! TTTTTAATCCTAATTCTCTT+TGG - chr4.3:89252162-89252181 MS.gene034290:intron 20.0%
! AAAAAATTGTCAAGGTGTAT+TGG - chr4.3:89252703-89252722 MS.gene034290:intron 25.0%
! AAACGACATTTATTAAGGAA+CGG - chr4.3:89252020-89252039 MS.gene034290:CDS 25.0%
! AAATATTTCATGCCATCATA+TGG + chr4.3:89252525-89252544 None:intergenic 25.0%
! AAATTGAATAGAATACCTGA+TGG + chr4.3:89250420-89250439 None:intergenic 25.0%
! ACATTATTATTTCATCATGC+AGG - chr4.3:89251202-89251221 MS.gene034290:intron 25.0%
! ACTGAATGCAATTATGTAAT+TGG - chr4.3:89251086-89251105 MS.gene034290:CDS 25.0%
! ATATGCATAAAGAGAAACTT+TGG + chr4.3:89252794-89252813 None:intergenic 25.0%
! ATCATGTACATTATTGCAAT+AGG - chr4.3:89250518-89250537 MS.gene034290:intron 25.0%
! CATAGATATGAAGCTTAAAA+AGG + chr4.3:89252838-89252857 None:intergenic 25.0%
! GAAATGATTAATGAGAGATA+AGG - chr4.3:89251971-89251990 MS.gene034290:CDS 25.0%
! GTCATACATGAAATAATAAC+AGG + chr4.3:89252335-89252354 None:intergenic 25.0%
! TAAAGACAAGCTCAAATTAA+TGG + chr4.3:89251454-89251473 None:intergenic 25.0%
! TAACAAATCCAAAGAGAATT+AGG + chr4.3:89252173-89252192 None:intergenic 25.0%
! TTAATCGTATATCTGATGAA+CGG - chr4.3:89252728-89252747 MS.gene034290:intron 25.0%
!! AAATAATAACAGGTACTGTA+TGG + chr4.3:89252325-89252344 None:intergenic 25.0%
!! ATTTATAAAGATGGTGGTAT+CGG - chr4.3:89252256-89252275 MS.gene034290:intron 25.0%
!! GTTAACATTCCTTTTTCTTT+AGG + chr4.3:89251795-89251814 None:intergenic 25.0%
!!! AAGACTTCTTATTTTTTGTC+AGG + chr4.3:89252378-89252397 None:intergenic 25.0%
!!! CTTGGTCATTATTTTGTTTT+TGG + chr4.3:89252100-89252119 None:intergenic 25.0%
!!! TACAAAGTATTGTCAAATAG+TGG - chr4.3:89250809-89250828 MS.gene034290:intron 25.0%
!!! TGTCGTTTTAAGTATTTATG+TGG + chr4.3:89252008-89252027 None:intergenic 25.0%
!!! TTATTTTTCAACGGTTATCA+AGG - chr4.3:89251683-89251702 MS.gene034290:intron 25.0%
!!! TTGTTTTTGGTATGATGTTT+TGG + chr4.3:89252087-89252106 None:intergenic 25.0%
AAAATACATTGCCAAGTACA+TGG + chr4.3:89252770-89252789 None:intergenic 30.0%
AATAAAAACGGCATACGTTA+AGG + chr4.3:89251665-89251684 None:intergenic 30.0%
ACATTATTGCAATAGGATAC+AGG - chr4.3:89250525-89250544 MS.gene034290:intron 30.0%
ACATTTATTAAGGAACGGAA+CGG - chr4.3:89252025-89252044 MS.gene034290:CDS 30.0%
AGATACCTTCAAAACTTCTA+GGG + chr4.3:89251544-89251563 None:intergenic 30.0%
AGTTCAATATCTTTGTGTCT+TGG + chr4.3:89252118-89252137 None:intergenic 30.0%
ATTGTAACTCTGTAGCATAT+CGG - chr4.3:89250844-89250863 MS.gene034290:intron 30.0%
ATTTGAGCTTGTCTTTATCT+TGG - chr4.3:89251457-89251476 MS.gene034290:intron 30.0%
CATTAAGGTCCTAAAGAAAA+AGG - chr4.3:89251783-89251802 MS.gene034290:intron 30.0%
GAAGAATATCAACATCTTTG+AGG + chr4.3:89250185-89250204 None:intergenic 30.0%
GCTTAAAAAGGACACATAAA+TGG + chr4.3:89252826-89252845 None:intergenic 30.0%
GTACATTTGAATGGACAAAA+CGG - chr4.3:89251367-89251386 MS.gene034290:intron 30.0%
TAAGAAGTCTTTAAATCGTC+CGG - chr4.3:89252387-89252406 MS.gene034290:intron 30.0%
TAATGAGGAGAGAGATTAAA+AGG + chr4.3:89251768-89251787 None:intergenic 30.0%
TACAAAAGTTGTGGTCAATA+AGG + chr4.3:89250924-89250943 None:intergenic 30.0%
TACATTTGAATGGACAAAAC+GGG - chr4.3:89251368-89251387 MS.gene034290:intron 30.0%
TAGATACCTTCAAAACTTCT+AGG + chr4.3:89251545-89251564 None:intergenic 30.0%
TAGTTTCTATGAGACAAAAC+TGG + chr4.3:89250714-89250733 None:intergenic 30.0%
TGGGTTATAAAAACAGTAGT+AGG + chr4.3:89252594-89252613 None:intergenic 30.0%
TTCAAATGTACCAAACTCAA+TGG + chr4.3:89251358-89251377 None:intergenic 30.0%
TTGAGTTTGGTACATTTGAA+TGG - chr4.3:89251358-89251377 MS.gene034290:intron 30.0%
TTGTACTAAATAGCATATCG+CGG + chr4.3:89250794-89250813 None:intergenic 30.0%
TTTAATCTCTCTCCTCATTA+AGG - chr4.3:89251768-89251787 MS.gene034290:intron 30.0%
! GGCAATAAAATAAGCTTTTG+AGG - chr4.3:89251885-89251904 MS.gene034290:CDS 30.0%
! GTTTTGTCTCATAGAAACTA+TGG - chr4.3:89250714-89250733 MS.gene034290:intron 30.0%
! TTGTTCTGTGATTTGTGATT+TGG - chr4.3:89250637-89250656 MS.gene034290:intron 30.0%
!! GATTTATTTTCCACTATCCA+CGG - chr4.3:89251057-89251076 MS.gene034290:CDS 30.0%
!! TAAAATAAGCTTTTGAGGAG+TGG - chr4.3:89251890-89251909 MS.gene034290:CDS 30.0%
!!! CTACTGTTTTTATAACCCAA+AGG - chr4.3:89252595-89252614 MS.gene034290:intron 30.0%
!!! TTTTCTTTAGGACCTTAATG+AGG + chr4.3:89251783-89251802 None:intergenic 30.0%
AAAGTTGTGGTCAATAAGGA+AGG + chr4.3:89250920-89250939 None:intergenic 35.0%
AAGTTGTGGTCAATAAGGAA+GGG + chr4.3:89250919-89250938 None:intergenic 35.0%
ACATTTGAATGGACAAAACG+GGG - chr4.3:89251369-89251388 MS.gene034290:intron 35.0%
AGAGATTAAAAGGATGAAGC+GGG + chr4.3:89251758-89251777 None:intergenic 35.0%
ATATGGTAGGAACCATATGA+TGG - chr4.3:89252510-89252529 MS.gene034290:intron 35.0%
CAATGGAAAGCTAATTGTAC+TGG + chr4.3:89252950-89252969 None:intergenic 35.0%
CACAGCGATACAAATTGATT+CGG - chr4.3:89252887-89252906 MS.gene034290:intron 35.0%
CCTGAGATATACCCTAATTT+GGG - chr4.3:89252217-89252236 MS.gene034290:intron 35.0%
CTTATAATTGGAGCTCTATC+AGG - chr4.3:89252415-89252434 MS.gene034290:intron 35.0%
GAATACCATCAATACTGGAA+GGG + chr4.3:89250969-89250988 None:intergenic 35.0%
GAGAGATTAAAAGGATGAAG+CGG + chr4.3:89251759-89251778 None:intergenic 35.0%
GATACCTTCAAAACTTCTAG+GGG + chr4.3:89251543-89251562 None:intergenic 35.0%
GTCATGAATACCATCAATAC+TGG + chr4.3:89250974-89250993 None:intergenic 35.0%
TATGGTTCCTACCATATGAT+CGG + chr4.3:89252507-89252526 None:intergenic 35.0%
TCCTGAGATATACCCTAATT+TGG - chr4.3:89252216-89252235 MS.gene034290:intron 35.0%
TGAATACCATCAATACTGGA+AGG + chr4.3:89250970-89250989 None:intergenic 35.0%
TTCTATGAGACAAAACTGGT+AGG + chr4.3:89250710-89250729 None:intergenic 35.0%
TTGAATTGTTTGTGTTGTGC+AGG - chr4.3:89250307-89250326 MS.gene034290:CDS 35.0%
! AAGTTGAAATCGAAAAGCGT+TGG + chr4.3:89250208-89250227 None:intergenic 35.0%
! ACAGCGATACAAATTGATTC+GGG - chr4.3:89252888-89252907 MS.gene034290:intron 35.0%
! TCATGACATGAGCATGTTTT+TGG - chr4.3:89250987-89251006 MS.gene034290:CDS 35.0%
! TCTCTTTGTTTACAGCTCTT+TGG - chr4.3:89252456-89252475 MS.gene034290:intron 35.0%
!! AGTTGAAATCGAAAAGCGTT+GGG + chr4.3:89250207-89250226 None:intergenic 35.0%
!! CAGTACAATTAGCTTTCCAT+TGG - chr4.3:89252948-89252967 MS.gene034290:CDS 35.0%
!! CTCTTTGGATTTGTTATTCC+AGG - chr4.3:89252177-89252196 MS.gene034290:intron 35.0%
!! TACAATTAGCTTTCCATTGG+AGG - chr4.3:89252951-89252970 MS.gene034290:CDS 35.0%
!! TGGATTTGTTATTCCAGGAT+CGG - chr4.3:89252182-89252201 MS.gene034290:intron 35.0%
AAACGGCATACGTTAAGGAA+CGG + chr4.3:89251660-89251679 None:intergenic 40.0%
AAGTGGATGATGAGGGTAAT+AGG + chr4.3:89251733-89251752 None:intergenic 40.0%
AATAGCATATCGCGGAACAA+TGG + chr4.3:89250786-89250805 None:intergenic 40.0%
ACAATAACCCAAGAGCAGTT+TGG + chr4.3:89250458-89250477 None:intergenic 40.0%
ACGCTATAGCACTATAGCAT+AGG - chr4.3:89251020-89251039 MS.gene034290:CDS 40.0%
ATAGACTATGTCTCTGCCTT+TGG + chr4.3:89252614-89252633 None:intergenic 40.0%
ATGGAACCTATCTGCAACTT+AGG + chr4.3:89251435-89251454 None:intergenic 40.0%
ATTCGAGAAGAAGGTCTGAA+GGG - chr4.3:89253051-89253070 MS.gene034290:intron 40.0%
CAATAACCCAAGAGCAGTTT+GGG + chr4.3:89250457-89250476 None:intergenic 40.0%
CATTTGAATGGACAAAACGG+GGG - chr4.3:89251370-89251389 MS.gene034290:intron 40.0%
CCATGCTTCATAAAACATCC+AGG + chr4.3:89253133-89253152 None:intergenic 40.0%
CCCAAATTAGGGTATATCTC+AGG + chr4.3:89252220-89252239 None:intergenic 40.0%
CGCTATTTGACAACATTGGA+TGG + chr4.3:89250582-89250601 None:intergenic 40.0%
GAAGTTCGTGAGTTTATGAG+CGG - chr4.3:89250347-89250366 MS.gene034290:CDS 40.0%
GAATACCTGATGGTTTCAAG+AGG + chr4.3:89250410-89250429 None:intergenic 40.0%
GAATCTCCTAAGTTGCAGAT+AGG - chr4.3:89251426-89251445 MS.gene034290:intron 40.0%
GACTTATAGTTAACCGATCC+TGG + chr4.3:89252198-89252217 None:intergenic 40.0%
GCTCCAATTATAAGCATCTC+CGG + chr4.3:89252409-89252428 None:intergenic 40.0%
GGATAGTGATACCATGTACT+TGG - chr4.3:89252756-89252775 MS.gene034290:intron 40.0%
GGTTTATCACCTACTCTAGT+TGG - chr4.3:89252292-89252311 MS.gene034290:intron 40.0%
TAATTGCAGCGCCCAAATTA+GGG + chr4.3:89252231-89252250 None:intergenic 40.0%
TACACGATCAACCGATCATA+TGG - chr4.3:89252493-89252512 MS.gene034290:intron 40.0%
TAGACTATGTCTCTGCCTTT+GGG + chr4.3:89252613-89252632 None:intergenic 40.0%
TATATCTGATGAACGGAGAC+AGG - chr4.3:89252735-89252754 MS.gene034290:intron 40.0%
TATGATCGGTTGATCGTGTA+CGG + chr4.3:89252493-89252512 None:intergenic 40.0%
TATTCGAGAAGAAGGTCTGA+AGG - chr4.3:89253050-89253069 MS.gene034290:intron 40.0%
TCGGAAGTTATTCGAGAAGA+AGG - chr4.3:89253042-89253061 MS.gene034290:intron 40.0%
TGAAGCATGGAAAGACATAC+TGG - chr4.3:89253143-89253162 MS.gene034290:CDS 40.0%
TTAAAGGTAATGCCATCCTC+TGG - chr4.3:89253102-89253121 MS.gene034290:CDS 40.0%
TTATTAAGGAACGGAACGGA+CGG - chr4.3:89252029-89252048 MS.gene034290:CDS 40.0%
TTCATCATGCAGGACAAGAA+TGG - chr4.3:89251212-89251231 MS.gene034290:intron 40.0%
TTTAGTCATAGCACCAGCTA+GGG + chr4.3:89250375-89250394 None:intergenic 40.0%
! ACAAGAATGGTAGTTGGTGT+TGG - chr4.3:89251225-89251244 MS.gene034290:intron 40.0%
! ATTGTACTGGCAGTAAAACC+TGG + chr4.3:89252937-89252956 None:intergenic 40.0%
! CAAGAATGGTAGTTGGTGTT+GGG - chr4.3:89251226-89251245 MS.gene034290:intron 40.0%
! CCTGGATGTTTTATGAAGCA+TGG - chr4.3:89253130-89253149 MS.gene034290:CDS 40.0%
! GGGATCAGTGTTGTTAATTG+TGG + chr4.3:89250899-89250918 None:intergenic 40.0%
! TTGTACTGGCAGTAAAACCT+GGG + chr4.3:89252936-89252955 None:intergenic 40.0%
AAACATCCAGGTGATTCCAG+AGG + chr4.3:89253121-89253140 None:intergenic 45.0%
AAACATGGCAGCAGCATTGT+CGG - chr4.3:89253023-89253042 MS.gene034290:intron 45.0%
AAAGGATGAAGCGGGAAAAG+TGG + chr4.3:89251750-89251769 None:intergenic 45.0%
AAGGGTCTTTACAGAGGTTG+GGG - chr4.3:89253069-89253088 MS.gene034290:CDS 45.0%
ATGATCGGTTGATCGTGTAC+GGG + chr4.3:89252492-89252511 None:intergenic 45.0%
CCAACACAAGCCATTGAGTT+TGG - chr4.3:89251345-89251364 MS.gene034290:intron 45.0%
CGATCAACCGATCATATGGT+AGG - chr4.3:89252497-89252516 MS.gene034290:intron 45.0%
CGTCCGGAGATGCTTATAAT+TGG - chr4.3:89252403-89252422 MS.gene034290:intron 45.0%
CTAATTGCAGCGCCCAAATT+AGG + chr4.3:89252232-89252251 None:intergenic 45.0%
CTTTAGTCATAGCACCAGCT+AGG + chr4.3:89250376-89250395 None:intergenic 45.0%
GAAGGGTCTTTACAGAGGTT+GGG - chr4.3:89253068-89253087 MS.gene034290:intron 45.0%
GCGTCGCTATTTGACAACAT+TGG + chr4.3:89250586-89250605 None:intergenic 45.0%
GGCAGAGACATAGTCTATCA+AGG - chr4.3:89252616-89252635 MS.gene034290:intron 45.0%
GGCATCACTGCAAGAGAAAT+GGG - chr4.3:89251395-89251414 MS.gene034290:intron 45.0%
GTCAAATAGTGGCTATTGCG+CGG - chr4.3:89250820-89250839 MS.gene034290:intron 45.0%
GTTGTCAAGACACGTTGCAA+TGG + chr4.3:89250686-89250705 None:intergenic 45.0%
TATCGCAGGTAGTTTCGTTC+AGG - chr4.3:89251257-89251276 MS.gene034290:intron 45.0%
TGAAGGGTCTTTACAGAGGT+TGG - chr4.3:89253067-89253086 MS.gene034290:intron 45.0%
TGCAGGACAAGAATGGTAGT+TGG - chr4.3:89251219-89251238 MS.gene034290:intron 45.0%
TGGCATCACTGCAAGAGAAA+TGG - chr4.3:89251394-89251413 MS.gene034290:intron 45.0%
TGTATGCCCAAACTGCTCTT+GGG - chr4.3:89250448-89250467 MS.gene034290:intron 45.0%
TTGCATTCAGTTGTCAACCG+TGG + chr4.3:89251077-89251096 None:intergenic 45.0%
TTGCTCCTCTTGAAACCATC+AGG - chr4.3:89250402-89250421 MS.gene034290:intron 45.0%
TTGGGGTGCAAGCTGTTTAA+AGG - chr4.3:89253086-89253105 MS.gene034290:CDS 45.0%
! AGACATACTGGTTGTCCAGA+AGG - chr4.3:89253155-89253174 MS.gene034290:CDS 45.0%
! CCAAACTCAATGGCTTGTGT+TGG + chr4.3:89251348-89251367 None:intergenic 45.0%
! CCTTCAAAACTTCTAGGGGA+TGG + chr4.3:89251539-89251558 None:intergenic 45.0%
! GACATACTGGTTGTCCAGAA+GGG - chr4.3:89253156-89253175 MS.gene034290:CDS 45.0%
! TGCTACCCTTCCAGTATTGA+TGG - chr4.3:89250961-89250980 MS.gene034290:CDS 45.0%
!! CCATCCCCTAGAAGTTTTGA+AGG - chr4.3:89251536-89251555 MS.gene034290:intron 45.0%
!! GTTCAGGTTGTAGATCAGCA+GGG - chr4.3:89251273-89251292 MS.gene034290:intron 45.0%
!!! AGAATTGTTTTTGCGCACCC+AGG - chr4.3:89252916-89252935 MS.gene034290:intron 45.0%
AATGCTGCTGCCATGTTTGG+TGG + chr4.3:89253021-89253040 None:intergenic 50.0%
AGCGGGAAAAGTGGATGATG+AGG + chr4.3:89251741-89251760 None:intergenic 50.0%
AGGTAAGTGCCCACCAAACA+TGG - chr4.3:89253008-89253027 MS.gene034290:intron 50.0%
AGGTTGTAGATCAGCAGGGA+TGG - chr4.3:89251277-89251296 MS.gene034290:intron 50.0%
ATCCAGGTGATTCCAGAGGA+TGG + chr4.3:89253117-89253136 None:intergenic 50.0%
ATGCTGCTGCCATGTTTGGT+GGG + chr4.3:89253020-89253039 None:intergenic 50.0%
CAGTTGTCAACCGTGGATAG+TGG + chr4.3:89251070-89251089 None:intergenic 50.0%
CTGTATGCCCAAACTGCTCT+TGG - chr4.3:89250447-89250466 MS.gene034290:intron 50.0%
GACAATGCTGCTGCCATGTT+TGG + chr4.3:89253024-89253043 None:intergenic 50.0%
GCGGGAAAAGTGGATGATGA+GGG + chr4.3:89251740-89251759 None:intergenic 50.0%
GGCATACGTTAAGGAACGGA+GGG + chr4.3:89251656-89251675 None:intergenic 50.0%
GGTCTGAAGGGTCTTTACAG+AGG - chr4.3:89253063-89253082 MS.gene034290:intron 50.0%
GTTGGGTCGAGAAATATCGC+AGG - chr4.3:89251243-89251262 MS.gene034290:intron 50.0%
TCAACTTCCTCACCAAGCAC+AGG - chr4.3:89250221-89250240 MS.gene034290:CDS 50.0%
TGAATGGACAAAACGGGGGA+TGG - chr4.3:89251374-89251393 MS.gene034290:intron 50.0%
TTGGATTTCACCAACTGCCG+TGG - chr4.3:89251476-89251495 MS.gene034290:intron 50.0%
! GGAAGCATGCCAACTAGAGT+AGG + chr4.3:89252304-89252323 None:intergenic 50.0%
!! AGCTAGAAAGCGTCTGATGG+TGG - chr4.3:89252975-89252994 MS.gene034290:CDS 50.0%
!! CGCTTTCTAGCTACCTCCAA+TGG + chr4.3:89252967-89252986 None:intergenic 50.0%
!! CGTTCAGGTTGTAGATCAGC+AGG - chr4.3:89251272-89251291 MS.gene034290:intron 50.0%
!! GCTAGAAAGCGTCTGATGGT+GGG - chr4.3:89252976-89252995 MS.gene034290:CDS 50.0%
!! GGTAGCTAGAAAGCGTCTGA+TGG - chr4.3:89252972-89252991 MS.gene034290:CDS 50.0%
!!! GGTATCGGCGCTTTTTATGC+TGG - chr4.3:89252271-89252290 MS.gene034290:intron 50.0%
ACTTCCTCACCAAGCACAGG+TGG - chr4.3:89250224-89250243 MS.gene034290:CDS 55.0%
AGCAGGGATGGCAAGGATTG+TGG - chr4.3:89251289-89251308 MS.gene034290:intron 55.0%
ATTTCACCAACTGCCGTGGC+TGG - chr4.3:89251480-89251499 MS.gene034290:intron 55.0%
CGGCATACGTTAAGGAACGG+AGG + chr4.3:89251657-89251676 None:intergenic 55.0%
GAGAGTAGACCACCTGTGCT+TGG + chr4.3:89250236-89250255 None:intergenic 55.0%
GCAGGGATGGCAAGGATTGT+GGG - chr4.3:89251290-89251309 MS.gene034290:intron 55.0%
GTAGATCAGCAGGGATGGCA+AGG - chr4.3:89251282-89251301 MS.gene034290:intron 55.0%
TTTCACCAACTGCCGTGGCT+GGG - chr4.3:89251481-89251500 MS.gene034290:intron 55.0%
! TAGACCACCTGTGCTTGGTG+AGG + chr4.3:89250231-89250250 None:intergenic 55.0%
!! CTGATGGTGGGAGCATTGCA+AGG - chr4.3:89252988-89253007 MS.gene034290:CDS 55.0%
!! TGCCATCCTCTGGAATCACC+TGG - chr4.3:89253112-89253131 MS.gene034290:CDS 55.0%
GGATGGCAAGGATTGTGGGC+TGG - chr4.3:89251294-89251313 MS.gene034290:intron 60.0%
TTCACCAACTGCCGTGGCTG+GGG - chr4.3:89251482-89251501 MS.gene034290:intron 60.0%
TTTATGAGCGGCGCCCTAGC+TGG - chr4.3:89250359-89250378 MS.gene034290:CDS 60.0%
TCCTGCAGCTGCCCCAGCCA+CGG + chr4.3:89251496-89251515 None:intergenic 70.0%
GCTGCCCCAGCCACGGCAGT+TGG + chr4.3:89251489-89251508 None:intergenic 75.0%
! GCCGTGGCTGGGGCAGCTGC+AGG - chr4.3:89251492-89251511 MS.gene034290:intron 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 89250154 89253191 89250154 ID=MS.gene034290
chr4.3 mRNA 89250154 89253191 89250154 ID=MS.gene034290.t1;Parent=MS.gene034290
chr4.3 exon 89253069 89253191 89253069 ID=MS.gene034290.t1.exon1;Parent=MS.gene034290.t1
chr4.3 CDS 89253069 89253191 89253069 ID=cds.MS.gene034290.t1;Parent=MS.gene034290.t1
chr4.3 exon 89252922 89253016 89252922 ID=MS.gene034290.t1.exon2;Parent=MS.gene034290.t1
chr4.3 CDS 89252922 89253016 89252922 ID=cds.MS.gene034290.t1;Parent=MS.gene034290.t1
chr4.3 exon 89251788 89252121 89251788 ID=MS.gene034290.t1.exon3;Parent=MS.gene034290.t1
chr4.3 CDS 89251788 89252121 89251788 ID=cds.MS.gene034290.t1;Parent=MS.gene034290.t1
chr4.3 exon 89250909 89251146 89250909 ID=MS.gene034290.t1.exon4;Parent=MS.gene034290.t1
chr4.3 CDS 89250909 89251146 89250909 ID=cds.MS.gene034290.t1;Parent=MS.gene034290.t1
chr4.3 exon 89250154 89250407 89250154 ID=MS.gene034290.t1.exon5;Parent=MS.gene034290.t1
chr4.3 CDS 89250154 89250407 89250154 ID=cds.MS.gene034290.t1;Parent=MS.gene034290.t1
Gene Sequence

>MS.gene034290

ATGGTGTGTTTGGTGATGTATACGCTATCCTCAAAGATGTTGATATTCTTCCCAACGCTTTTCGATTTCAACTTCCTCACCAAGCACAGGTGGTCTACTCTCTTTTATTATTCAATTTCATTCGTAATAATTCATAATAATAATTGAATTGAATTGAATTGTTTGTGTTGTGCAGGATTTTTTAGATAAGAGAGAAGTTCGTGAGTTTATGAGCGGCGCCCTAGCTGGTGCTATGACTAAAGCTATTCTTGCTCCTCTTGAAACCATCAGGTATTCTATTCAATTTAACACTTCTGTATGCCCAAACTGCTCTTGGGTTATTGTGTTTTCTAGTTGATCTTCCTTTATATATAAAAATCTATCAATCATGTACATTATTGCAATAGGATACAGGTATTAATCATGTACATTTATTTATACATAAGCCATCCAATGTTGTCAAATAGCGACGCTATAGAGTAGCGCAATTTTCAAAAACAGCTATTGTTCTGTGATTTGTGATTTGGTACAAAGTATTCTCAAATAGCGACCATTGCAACGTGTCTTGACAACTCCTACCAGTTTTGTCTCATAGAAACTATGGTCTAGCTATAGCACTATTACATAGCAGAATTTGAACAAGTAGCTAGCCATTGTTCCGCGATATGCTATTTAGTACAAAGTATTGTCAAATAGTGGCTATTGCGCGGTATTGTAACTCTGTAGCATATCGGAGTTTGAACAAAGTGCAATTTTTCGCTATCCACAATTAACAACACTGATCCCTTCCTTATTGACCACAACTTTTGTATTTATTATCACTTTCATTGCTACCCTTCCAGTATTGATGGTATTCATGACATGAGCATGTTTTTGGATCTCTTTTTACGCTATAGCACTATAGCATAGGATAATTTGAACAAAGATTTATTTTCCACTATCCACGGTTGACAACTGAATGCAATTATGTAATTGGATAAAGATACAAATGATGTAAAATCTAAGTAAGGCTTCAATTTTACATTCAAACAAAGTTGCTAACTAGCTGTATGCATTAGTGAAATGTTTTACATTATTATTTCATCATGCAGGACAAGAATGGTAGTTGGTGTTGGGTCGAGAAATATCGCAGGTAGTTTCGTTCAGGTTGTAGATCAGCAGGGATGGCAAGGATTGTGGGCTGGAAACATGATCAATATGATTCGTATAGTTCCAACACAAGCCATTGAGTTTGGTACATTTGAATGGACAAAACGGGGGATGGCATCACTGCAAGAGAAATGGGAACAGAATGAATCTCCTAAGTTGCAGATAGGTTCCATTAATTTGAGCTTGTCTTTATCTTGGATTTCACCAACTGCCGTGGCTGGGGCAGCTGCAGGAATTGCTAGCACGCTTGCATGCCATCCCCTAGAAGTTTTGAAGGTATCTATCTCATTTGAATGTTTAAGATAACGAATTAAAAATGCAATAAATAAATTGTATAAATTGTCTTTGGACGTCAATCAATATCATATACTCCCTCCGTTCCTTAACGTATGCCGTTTTTATTATTTTTCAACGGTTATCAAGGATGAGATATTCTAATAAAATTGTTCCTATTACCCTCATCATCCACTTTTCCCGCTTCATCCTTTTAATCTCTCTCCTCATTAAGGTCCTAAAGAAAAAGGAATGTTAACAACAAAATATGCTACACTAATTTATATAGTGAAACAATTAGGCATCAACATATGTCATTAACTTTACTTCGGCAATAAAATAAGCTTTTGAGGAGTGGATGTATGATAATAAGTTTCTCTTTAAACTTTTCAAATAATTAATGACAGATAAGGGAAGAAATGATTAATGAGAGATAAGGGTAAAAAGTAACCACATAAATACTTAAAACGACATTTATTAAGGAACGGAACGGACGGAGTACTCTTATGTATTGTTGAGTTAATAATGACCAAAACATCATACCAAAAACAAAATAATGACCAAGACACAAAGATATTGAACTTAGCTTTCTTCTCTTTTGCTCTTGTTTTTAATCCTAATTCTCTTTGGATTTGTTATTCCAGGATCGGTTAACTATAAGTCCTGAGATATACCCTAATTTGGGCGCTGCAATTAGAAATATTTATAAAGATGGTGGTATCGGCGCTTTTTATGCTGGTTTATCACCTACTCTAGTTGGCATGCTTCCATACAGTACCTGTTATTATTTCATGTATGACACAATAAAGAAATCTTACTGCCTGACAAAAAATAAGAAGTCTTTAAATCGTCCGGAGATGCTTATAATTGGAGCTCTATCAGGTGAGACATTCTCGATGTTTCTCTTTGTTTACAGCTCTTTGGTTTGCGCTGTCCCGTACACGATCAACCGATCATATGGTAGGAACCATATGATGGCATGAAATATTTATATTTATGAAAATTTTTGCTAGCAGCTGTTTGCTTTGTCTCGTCTCCTACTACTGTTTTTATAACCCAAAGGCAGAGACATAGTCTATCAAGGTGTTTGTTGCTAGCTTTTGCGCGTCTTGTGCAGACTTCGCTCTTAATAAAATTTGCCGATTAAAAAAAAATTGTCAAGGTGTATTGGTTTTAATCGTATATCTGATGAACGGAGACAGGATAGTGATACCATGTACTTGGCAATGTATTTTGCCAAAGTTTCTCTTTATGCATATTTTTCTTTGCCATTTATGTGTCCTTTTTAAGCTTCATATCTATGCAATGCGACACGTGAACTAAACTTTTGTACACAGCGATACAAATTGATTCGGGCTAACAGAATTGTTTTTGCGCACCCAGGTTTTACTGCCAGTACAATTAGCTTTCCATTGGAGGTAGCTAGAAAGCGTCTGATGGTGGGAGCATTGCAAGGTAAGTGCCCACCAAACATGGCAGCAGCATTGTCGGAAGTTATTCGAGAAGAAGGTCTGAAGGGTCTTTACAGAGGTTGGGGTGCAAGCTGTTTAAAGGTAATGCCATCCTCTGGAATCACCTGGATGTTTTATGAAGCATGGAAAGACATACTGGTTGTCCAGAAGGGTATTTCCTTATAG
Protein sequence

>MS.gene034290.t1

MVCLVMYTLSSKMLIFFPTLFDFNFLTKHRWSTLFYYSISFDFLDKREVREFMSGALAGAMTKAILAPLETIRTRMVVGVGSRNIAGSFVQVVDQQGWQGLWAGNMINMIRIVPTQAIEFGTFEWTKRGMASLQEKWEQNESPKLQIGSINLSLSLSWISPTAVAGAAAGIASTLACHPLEVLKDRLTISPEIYPNLGAAIRNIYKDGGIGAFYAGLSPTLVGMLPYSTCYYFMYDTIKKSYCLTKNKKSLNRPEMLIIGALSGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALSEVIREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILVVQKGISL