AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064043

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064043.t1 MTR_6g091800 96.273 322 5 1 1 322 1 315 0.0 626
MS.gene064043.t1 MTR_6g091800 89.595 346 5 2 1 322 1 339 0.0 614
MS.gene064043.t1 MTR_6g091800 88.715 319 5 2 1 295 1 312 0.0 558
MS.gene064043.t1 MTR_6g034145 98.084 261 5 0 62 322 1 261 0.0 528
MS.gene064043.t1 MTR_6g034145 25.854 205 127 4 25 216 60 252 2.89e-12 66.2
MS.gene064043.t1 MTR_6g091800 83.851 322 4 2 1 322 1 274 0.0 525
MS.gene064043.t1 MTR_6g091800 78.035 346 4 3 1 322 1 298 0.0 513
MS.gene064043.t1 MTR_6g092210 91.571 261 16 1 62 322 1 255 1.14e-176 489
MS.gene064043.t1 MTR_6g092210 26.633 199 127 4 25 216 60 246 8.50e-13 67.8
MS.gene064043.t1 MTR_6g091800 95.669 254 4 1 1 254 1 247 1.82e-176 489
MS.gene064043.t1 MTR_6g091800 27.885 208 123 5 121 316 18 210 4.70e-14 71.6
MS.gene064043.t1 MTR_6g091800 87.410 278 4 2 1 254 1 271 2.37e-171 477
MS.gene064043.t1 MTR_6g091800 25.431 232 122 7 121 316 18 234 7.24e-11 62.4
MS.gene064043.t1 MTR_6g091910 88.119 202 22 1 121 322 18 217 3.62e-128 365
MS.gene064043.t1 MTR_6g091910 36.842 228 112 5 1 216 1 208 5.63e-33 121
MS.gene064043.t1 MTR_6g091800 94.764 191 3 1 1 191 1 184 5.42e-127 360
MS.gene064043.t1 MTR_3g104600 54.037 322 141 3 6 320 15 336 1.18e-123 358
MS.gene064043.t1 MTR_6g091800 84.186 215 3 2 1 191 1 208 5.74e-122 349
MS.gene064043.t1 MTR_5g009500 37.267 322 165 7 22 318 34 343 8.23e-61 197
MS.gene064043.t1 MTR_8g027975 34.259 324 174 6 22 318 47 358 1.83e-56 187
MS.gene064043.t1 MTR_7g064980 35.179 307 167 6 24 313 23 314 3.64e-51 172
MS.gene064043.t1 MTR_3g098460 33.446 296 175 6 23 313 202 480 3.13e-48 168
MS.gene064043.t1 MTR_7g084400 34.797 296 162 7 26 313 213 485 1.46e-46 164
MS.gene064043.t1 MTR_8g096050 33.108 296 176 6 23 313 224 502 1.18e-45 162
MS.gene064043.t1 MTR_8g096050 33.668 199 119 4 23 219 318 505 5.77e-26 108
MS.gene064043.t1 MTR_5g081150 33.663 303 173 5 25 313 33 321 3.06e-43 151
MS.gene064043.t1 MTR_5g081150 28.509 228 138 7 104 320 16 229 2.95e-13 69.7
MS.gene064043.t1 MTR_5g081150 31.472 197 119 5 25 218 140 323 3.24e-12 66.6
MS.gene064043.t1 MTR_1g012030 31.864 295 175 6 24 313 137 410 2.46e-41 149
MS.gene064043.t1 MTR_1g012030 30.102 196 123 3 19 214 227 408 3.65e-21 93.6
MS.gene064043.t1 MTR_1g012030 26.887 212 127 6 116 321 132 321 2.01e-13 70.9
MS.gene064043.t1 MTR_3g107510 30.169 295 180 6 24 313 120 393 2.03e-39 143
MS.gene064043.t1 MTR_3g107510 25.854 205 125 6 122 321 122 304 7.95e-13 68.9
MS.gene064043.t1 MTR_3g104500 29.582 311 185 9 22 315 30 323 4.22e-38 138
MS.gene064043.t1 MTR_3g104500 25.121 207 143 5 121 321 33 233 7.49e-15 74.3
MS.gene064043.t1 MTR_7g068340 30.175 285 159 5 37 310 98 353 1.04e-36 135
MS.gene064043.t1 MTR_4g114320 27.946 297 184 6 24 313 121 394 1.19e-36 135
MS.gene064043.t1 MTR_4g114320 29.353 201 127 4 19 219 212 397 3.47e-19 87.8
MS.gene064043.t1 MTR_4g119770 27.523 327 181 7 28 314 16 326 1.65e-34 129
MS.gene064043.t1 MTR_4g119770 27.941 204 130 5 120 312 12 209 9.50e-19 85.9
MS.gene064043.t1 MTR_2g436930 26.480 321 188 5 28 313 17 324 2.01e-34 128
MS.gene064043.t1 MTR_2g436930 29.439 214 136 5 108 312 1 208 6.86e-22 94.7
MS.gene064043.t1 MTR_4g016730 30.070 286 155 7 37 310 100 352 9.79e-31 119
MS.gene064043.t1 MTR_8g090210 30.063 316 177 7 24 317 108 401 2.18e-30 119
MS.gene064043.t1 MTR_5g081150 33.913 230 124 5 25 240 33 248 9.26e-30 114
MS.gene064043.t1 MTR_5g081150 28.509 228 138 7 104 320 16 229 7.67e-14 70.5
MS.gene064043.t1 MTR_5g081150 33.913 230 124 5 25 240 33 248 1.12e-29 114
MS.gene064043.t1 MTR_5g081150 28.509 228 138 7 104 320 16 229 9.80e-14 70.5
MS.gene064043.t1 MTR_3g074490 30.255 314 175 7 24 315 114 405 2.96e-29 116
MS.gene064043.t1 MTR_7g109135 28.956 297 186 6 28 313 24 306 3.01e-29 114
MS.gene064043.t1 MTR_7g109135 31.138 167 97 6 65 225 165 319 3.89e-12 66.6
MS.gene064043.t1 MTR_4g078545 29.097 299 191 6 22 310 71 358 6.81e-29 114
MS.gene064043.t1 MTR_4g005330 26.032 315 187 10 24 315 64 355 4.64e-28 112
MS.gene064043.t1 MTR_3g028590 28.094 299 194 6 22 310 89 376 1.38e-27 111
MS.gene064043.t1 MTR_3g028590 28.094 299 194 6 22 310 93 380 1.41e-27 111
MS.gene064043.t1 MTR_2g098070 28.094 299 194 6 22 310 62 349 1.83e-27 110
MS.gene064043.t1 MTR_4g005330 25.962 312 185 10 27 315 1 289 2.28e-27 108
MS.gene064043.t1 MTR_4g119770 28.077 260 142 5 28 256 16 261 8.10e-27 106
MS.gene064043.t1 MTR_4g119770 27.941 204 130 5 120 312 12 209 4.65e-19 85.5
MS.gene064043.t1 MTR_7g084400 33.333 222 118 6 26 236 207 409 8.46e-27 109
MS.gene064043.t1 MTR_7g084400 27.041 196 118 5 122 311 207 383 5.46e-16 78.6
MS.gene064043.t1 MTR_8g036880 27.090 299 198 6 22 310 98 386 4.30e-26 107
MS.gene064043.t1 MTR_7g109135 27.946 297 182 6 28 313 24 299 2.34e-25 103
MS.gene064043.t1 MTR_7g109135 31.138 167 97 6 65 225 158 312 4.55e-12 66.2
MS.gene064043.t1 MTR_1g087840 28.425 292 174 9 38 313 31 303 3.17e-25 103
MS.gene064043.t1 MTR_1g087840 30.556 216 134 8 112 322 8 212 2.29e-14 72.8
MS.gene064043.t1 MTR_8g107270 26.045 311 198 10 24 320 16 308 6.71e-25 102
MS.gene064043.t1 MTR_5g055410 27.719 285 185 6 38 313 33 305 4.79e-24 100
MS.gene064043.t1 MTR_2g436930 28.972 214 121 3 118 313 34 234 1.44e-23 97.4
MS.gene064043.t1 MTR_2g436930 25.862 232 150 6 3 225 20 238 2.00e-14 72.0
MS.gene064043.t1 MTR_8g098240 25.524 286 191 6 27 311 321 585 6.44e-21 93.6
MS.gene064043.t1 MTR_7g109135 27.801 241 154 5 79 313 2 228 6.68e-21 90.1
MS.gene064043.t1 MTR_7g109135 30.952 168 98 6 64 225 86 241 3.08e-12 65.9
MS.gene064043.t1 MTR_5g030530 25.333 300 207 6 23 313 5 296 1.14e-20 90.5
MS.gene064043.t1 MTR_8g066975 25.333 300 207 6 23 313 5 296 6.74e-20 88.6
MS.gene064043.t1 MTR_8g076760 24.497 298 191 8 42 320 30 312 4.37e-18 83.6
MS.gene064043.t1 MTR_7g109135 30.108 186 110 5 134 313 36 207 7.43e-18 81.3
MS.gene064043.t1 MTR_7g109135 30.952 168 98 6 64 225 65 220 1.43e-12 66.2
MS.gene064043.t1 MTR_4g012850 26.552 290 173 9 16 288 1 267 3.12e-17 81.3
MS.gene064043.t1 MTR_4g012850 29.798 198 117 6 20 210 104 286 1.39e-16 79.3
MS.gene064043.t1 MTR_2g102010 31.016 187 111 3 39 219 123 297 3.60e-16 77.8
MS.gene064043.t1 MTR_2g102010 22.368 304 207 10 12 307 6 288 3.03e-11 63.5
MS.gene064043.t1 MTR_3g025800 23.582 335 215 9 17 322 20 342 3.91e-16 78.6
MS.gene064043.t1 MTR_8g092080 31.019 216 130 6 17 232 125 321 5.48e-16 77.8
MS.gene064043.t1 MTR_8g092080 21.384 318 199 8 3 313 32 305 6.26e-11 62.8
MS.gene064043.t1 MTR_5g073040 25.000 300 191 7 26 314 39 315 8.83e-16 77.0
MS.gene064043.t1 MTR_7g015870 29.187 209 118 5 27 219 123 317 4.34e-15 75.1
MS.gene064043.t1 MTR_7g015870 25.092 271 160 11 71 320 70 318 5.37e-11 63.2
MS.gene064043.t1 MTR_6g034515 25.888 197 135 3 27 222 161 347 6.82e-14 72.0
MS.gene064043.t1 MTR_6g034515 24.161 298 184 11 42 322 83 355 4.87e-12 66.6
MS.gene064043.t1 MTR_7g117030 23.755 261 168 9 68 310 85 332 2.25e-13 70.5
MS.gene064043.t1 MTR_7g015870 28.431 204 116 5 27 214 119 308 5.73e-13 68.9
MS.gene064043.t1 MTR_5g081910 23.826 298 201 8 42 314 24 320 1.70e-12 67.8
MS.gene064043.t1 MTR_1g097890 28.218 202 121 6 27 222 132 315 2.14e-12 67.0
MS.gene064043.t1 MTR_1g097890 21.562 320 207 8 6 319 31 312 1.27e-11 64.7
MS.gene064043.t1 MTR_3g100570 24.500 200 129 5 24 214 122 308 2.52e-12 67.0
MS.gene064043.t1 MTR_1g090330 23.039 204 135 4 20 214 105 295 4.20e-12 66.2
MS.gene064043.t1 MTR_1g090330 19.454 293 218 6 25 310 13 294 9.32e-11 62.0
MS.gene064043.t1 MTR_5g081910 25.000 208 141 5 121 314 40 246 7.21e-12 65.1
MS.gene064043.t1 MTR_4g088545 27.094 203 134 4 24 221 10 203 9.06e-12 64.3
MS.gene064043.t1 MTR_1g088995 21.875 320 212 9 3 310 11 304 9.71e-12 65.1
MS.gene064043.t1 MTR_4g088545 27.273 198 130 4 24 216 10 198 1.17e-11 64.7
MS.gene064043.t1 MTR_4g088545 27.273 198 130 4 24 216 10 198 1.40e-11 64.7
MS.gene064043.t1 MTR_6g015860 24.759 311 191 12 32 320 21 310 3.17e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064043.t1 AT4G26180 67.619 315 101 1 7 320 2 316 7.64e-161 452
MS.gene064043.t1 AT4G26180 66.897 290 95 1 7 295 2 291 8.65e-146 412
MS.gene064043.t1 AT1G14560 56.869 313 127 3 14 319 15 326 3.79e-120 349
MS.gene064043.t1 AT1G14560 56.401 289 118 3 14 295 15 302 5.42e-106 312
MS.gene064043.t1 AT1G14560 56.769 229 91 3 98 319 1 228 1.36e-86 260
MS.gene064043.t1 AT1G14560 28.959 221 131 6 11 213 7 219 6.03e-17 79.0
MS.gene064043.t1 AT4G01100 35.913 323 170 6 22 318 38 349 2.78e-60 196
MS.gene064043.t1 AT4G01100 34.718 337 169 7 22 318 38 363 7.37e-58 191
MS.gene064043.t1 AT4G01100 34.839 310 165 6 35 318 1 299 1.33e-54 180
MS.gene064043.t1 AT3G55640 36.308 325 176 8 5 314 18 326 7.82e-54 179
MS.gene064043.t1 AT3G55640 36.308 325 176 8 5 314 18 326 7.82e-54 179
MS.gene064043.t1 AT3G53940 34.839 310 171 7 24 317 71 365 3.74e-51 173
MS.gene064043.t1 AT2G37890 36.066 305 165 6 24 313 43 332 9.54e-51 171
MS.gene064043.t1 AT5G61810 34.459 296 164 7 23 313 62 332 2.33e-49 168
MS.gene064043.t1 AT5G61810 32.653 196 114 3 26 219 156 335 8.16e-22 94.4
MS.gene064043.t1 AT5G61810 25.510 196 121 5 122 314 65 238 1.20e-11 65.1
MS.gene064043.t1 AT5G61810 34.459 296 164 7 23 313 205 475 4.64e-48 168
MS.gene064043.t1 AT5G61810 32.653 196 114 3 26 219 299 478 1.42e-21 95.1
MS.gene064043.t1 AT5G61810 25.510 196 121 5 122 314 208 381 3.01e-11 64.3
MS.gene064043.t1 AT5G51050 32.660 297 171 7 26 315 223 497 4.21e-46 163
MS.gene064043.t1 AT5G51050 31.500 200 112 6 26 219 318 498 2.32e-18 85.9
MS.gene064043.t1 AT5G56450 31.949 313 175 7 22 313 30 325 3.28e-41 146
MS.gene064043.t1 AT5G56450 22.870 223 154 6 110 321 22 237 9.43e-11 62.4
MS.gene064043.t1 AT5G07320 31.560 282 165 6 36 313 219 476 3.79e-41 149
MS.gene064043.t1 AT5G07320 31.156 199 113 5 26 219 300 479 5.04e-19 87.8
MS.gene064043.t1 AT5G07320 26.111 180 113 4 136 314 223 383 1.83e-11 65.1
MS.gene064043.t1 AT4G32400 33.893 298 165 7 24 313 112 385 1.30e-40 146
MS.gene064043.t1 AT4G32400 28.155 206 132 5 19 223 202 392 2.21e-16 79.7
MS.gene064043.t1 AT4G32400 26.601 203 123 4 122 320 114 294 1.97e-13 70.9
MS.gene064043.t1 AT3G51870 30.070 286 158 5 37 310 102 357 6.98e-39 141
MS.gene064043.t1 AT3G51870 24.828 145 101 2 170 313 132 269 8.31e-12 65.9
MS.gene064043.t1 AT3G55640 37.052 251 127 8 5 240 18 252 1.48e-37 135
MS.gene064043.t1 AT3G55640 29.268 205 120 6 121 314 37 227 4.08e-17 80.1
MS.gene064043.t1 AT3G55640 37.052 251 127 8 5 240 18 252 1.48e-37 135
MS.gene064043.t1 AT3G55640 29.268 205 120 6 121 314 37 227 4.08e-17 80.1
MS.gene064043.t1 AT3G53940 35.776 232 119 6 24 240 71 287 2.25e-36 132
MS.gene064043.t1 AT3G53940 28.986 207 122 6 117 312 68 260 9.17e-14 70.9
MS.gene064043.t1 AT5G01500 30.137 292 156 6 37 313 130 388 1.72e-35 133
MS.gene064043.t1 AT5G48970 27.778 324 183 6 28 313 24 334 3.15e-35 130
MS.gene064043.t1 AT5G48970 29.048 210 136 4 112 313 12 216 6.33e-21 92.0
MS.gene064043.t1 AT3G21390 27.864 323 183 5 28 313 21 330 4.62e-34 127
MS.gene064043.t1 AT3G21390 28.846 208 135 4 112 312 9 210 1.64e-19 88.2
MS.gene064043.t1 AT3G21390 22.624 221 150 4 3 210 112 324 6.21e-11 63.2
MS.gene064043.t1 AT3G21390 27.778 324 184 5 28 314 43 353 4.75e-34 128
MS.gene064043.t1 AT3G21390 28.846 208 135 4 112 312 31 232 2.58e-19 87.8
MS.gene064043.t1 AT3G21390 22.624 221 150 4 3 210 134 346 5.69e-11 63.2
MS.gene064043.t1 AT3G20240 27.302 315 181 9 23 313 49 339 2.43e-32 123
MS.gene064043.t1 AT4G28390 29.167 312 194 7 15 310 66 366 2.67e-30 118
MS.gene064043.t1 AT4G28390 29.167 312 194 7 15 310 66 366 2.67e-30 118
MS.gene064043.t1 AT5G64970 30.380 316 176 6 24 317 133 426 5.37e-30 118
MS.gene064043.t1 AT5G64970 30.032 313 175 6 27 317 12 302 8.21e-30 115
MS.gene064043.t1 AT5G48970 27.106 273 162 4 65 313 4 263 2.11e-29 113
MS.gene064043.t1 AT5G13490 29.431 299 191 6 22 310 84 372 4.49e-29 115
MS.gene064043.t1 AT5G13490 29.431 299 191 6 22 310 84 372 4.49e-29 115
MS.gene064043.t1 AT3G08580 29.097 299 192 6 22 310 80 368 1.04e-27 111
MS.gene064043.t1 AT3G08580 29.097 299 192 6 22 310 80 368 1.04e-27 111
MS.gene064043.t1 AT1G78180 31.761 318 165 9 24 315 126 417 3.54e-27 110
MS.gene064043.t1 AT5G17400 27.891 294 184 6 22 301 10 289 1.17e-25 104
MS.gene064043.t1 AT4G11440 29.139 302 182 8 22 313 324 603 1.10e-24 104
MS.gene064043.t1 AT4G11440 29.139 302 182 8 22 313 324 603 1.10e-24 104
MS.gene064043.t1 AT1G25380 26.990 289 185 8 38 314 33 307 1.53e-24 102
MS.gene064043.t1 AT1G25380 26.990 289 185 8 38 314 33 307 1.53e-24 102
MS.gene064043.t1 AT2G47490 26.962 293 186 7 38 317 29 306 8.80e-23 96.7
MS.gene064043.t1 AT2G47490 30.729 192 117 6 135 322 30 209 5.87e-14 71.6
MS.gene064043.t1 AT5G64970 28.571 294 166 6 24 295 133 404 4.08e-22 96.3
MS.gene064043.t1 AT5G66380 26.923 312 188 10 25 314 8 301 2.39e-19 87.0
MS.gene064043.t1 AT5G46800 26.936 297 202 7 27 313 8 299 1.84e-18 84.7
MS.gene064043.t1 AT5G46800 26.936 297 202 7 27 313 8 299 1.84e-18 84.7
MS.gene064043.t1 AT5G46800 26.936 297 202 7 27 313 8 299 1.84e-18 84.7
MS.gene064043.t1 AT2G30160 25.083 303 199 7 22 314 38 322 4.92e-18 84.0
MS.gene064043.t1 AT2G33820 24.917 301 197 10 22 307 14 300 3.64e-17 80.9
MS.gene064043.t1 AT1G74240 25.948 343 219 9 1 314 1 337 1.34e-16 80.1
MS.gene064043.t1 AT1G07030 23.934 305 197 6 22 314 36 317 2.90e-16 78.6
MS.gene064043.t1 AT2G39970 25.085 295 193 8 42 309 24 317 2.09e-15 76.3
MS.gene064043.t1 AT1G34065 29.648 199 122 4 25 223 162 342 3.57e-15 75.5
MS.gene064043.t1 AT1G34065 22.148 298 182 9 24 313 80 335 2.27e-11 64.3
MS.gene064043.t1 AT1G34065 29.648 199 122 4 25 223 155 335 4.03e-15 75.5
MS.gene064043.t1 AT1G34065 22.148 298 182 9 24 313 73 328 2.01e-11 64.7
MS.gene064043.t1 AT2G33820 24.272 309 197 11 22 307 14 308 1.14e-14 73.9
MS.gene064043.t1 AT1G14140 22.373 295 206 7 26 310 16 297 3.33e-14 72.4
MS.gene064043.t1 AT1G79900 30.481 187 104 5 29 210 112 277 1.29e-13 70.5
MS.gene064043.t1 AT4G39460 22.293 314 198 7 6 313 38 311 3.22e-13 69.7
MS.gene064043.t1 AT4G39460 28.293 205 128 5 14 218 128 313 1.04e-12 68.2
MS.gene064043.t1 AT4G39460 22.293 314 198 7 6 313 38 311 3.22e-13 69.7
MS.gene064043.t1 AT4G39460 28.293 205 128 5 14 218 128 313 1.04e-12 68.2
MS.gene064043.t1 AT4G39460 22.293 314 198 7 6 313 38 311 3.22e-13 69.7
MS.gene064043.t1 AT4G39460 28.293 205 128 5 14 218 128 313 1.04e-12 68.2
MS.gene064043.t1 AT5G15640 26.148 283 163 10 32 288 32 294 9.01e-13 68.6
MS.gene064043.t1 AT5G42130 24.752 303 191 9 35 322 127 407 9.82e-13 68.9
MS.gene064043.t1 AT5G42130 23.005 213 150 4 14 222 197 399 5.40e-11 63.5
MS.gene064043.t1 AT5G15640 26.148 283 163 10 32 288 25 287 1.14e-12 68.2
MS.gene064043.t1 AT5G58970 21.865 311 203 8 22 314 12 300 1.76e-12 67.4
MS.gene064043.t1 AT5G58970 25.604 207 131 4 13 214 108 296 5.90e-12 65.9
MS.gene064043.t1 AT5G26200 23.824 319 218 7 8 310 25 334 2.00e-12 67.4
MS.gene064043.t1 AT4G27940 22.814 263 176 7 68 313 155 407 6.45e-12 66.2
MS.gene064043.t1 AT3G54110 28.421 190 117 7 136 316 29 208 1.24e-11 64.7
MS.gene064043.t1 AT1G74240 24.150 294 200 5 39 314 1 289 1.82e-11 64.3
MS.gene064043.t1 AT2G46320 26.378 254 166 9 68 310 109 352 2.20e-11 64.7
MS.gene064043.t1 AT2G33820 25.991 227 149 7 22 238 14 231 2.52e-11 63.5
MS.gene064043.t1 AT4G03115 22.185 302 204 7 19 311 60 339 8.93e-11 62.8

Find 98 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCCGTGGCCGGTTTAT+TGG 0.168335 6.1:+79433179 MS.gene064043:CDS
CCCCAAAAGGCCTTCGGTTT+TGG 0.201446 6.1:-79432429 None:intergenic
CGCCAAAACCGAAGGCCTTT+TGG 0.218872 6.1:+79432427 MS.gene064043:CDS
CCAACCAAGTTGAATGTTTC+CGG 0.221472 6.1:+79432840 MS.gene064043:CDS
ACGTCTCAAAATTCTCTTTC+AGG 0.226178 6.1:+79430907 MS.gene064043:CDS
CTTCTTGCTGGTGGTCTTGC+TGG 0.240016 6.1:+79430851 MS.gene064043:CDS
TCGGACTAAGTTAGCTTATC+AGG 0.253353 6.1:+79432720 MS.gene064043:CDS
TCTGAAGAAGCCGAATTAAA+AGG 0.260819 6.1:+79433341 MS.gene064043:CDS
TGCAAGCCTTTCCTAATGTT+TGG 0.291574 6.1:+79432617 MS.gene064043:CDS
CTTATCCACTTGACTTAATT+CGG 0.304027 6.1:+79432701 MS.gene064043:CDS
GCCACAGCTCCAACACTCTT+TGG 0.317030 6.1:+79433057 MS.gene064043:intron
ACCACCAGCAAGAAGTTCTT+TGG 0.324787 6.1:-79430843 None:intergenic
AAGAGGAGCAACAACAGTTT+TGG 0.328392 6.1:-79430882 None:intergenic
TAGTCCACTTCATCTCTTGA+TGG 0.341198 6.1:-79433589 None:intergenic
TGATACTCAGCCCTGAATAT+AGG 0.343665 6.1:-79433412 None:intergenic
GGATCCGTGGCCGGTTTATT+GGG 0.353057 6.1:+79433180 MS.gene064043:CDS
TTTGCCAAAGAACTTCTTGC+TGG 0.360123 6.1:+79430839 MS.gene064043:CDS
CGCTACGAAACTCAGTTCTT+CGG 0.375913 6.1:-79432376 None:intergenic
TGGCATTAGAGGTCTCTATA+GGG 0.376779 6.1:+79432929 MS.gene064043:CDS
GGCTGGAAGACCCTATATTC+AGG 0.379346 6.1:+79433401 MS.gene064043:CDS
GAGAGGGATGTGATCGAGTA+TGG 0.382322 6.1:-79430816 None:intergenic
GTGGCATTAGAGGTCTCTAT+AGG 0.387290 6.1:+79432928 MS.gene064043:CDS
CATATCCTCTTGAAGTTGTC+AGG 0.390609 6.1:+79433214 MS.gene064043:CDS
TATAAAGAGGGTGGCATTAG+AGG 0.393834 6.1:+79432918 MS.gene064043:CDS
GTAGGACCTTTCCAAACATT+AGG 0.400870 6.1:-79432628 None:intergenic
GAAGTTATTTGCAGGGGAAA+TGG 0.401049 6.1:+79432520 MS.gene064043:intron
TTTCGTAGCGCAGGACTGTC+TGG 0.406606 6.1:+79432389 MS.gene064043:CDS
CAGAGAGTGACCCTGCCATT+AGG 0.418512 6.1:-79432657 None:intergenic
AGGTCCTACCCTTGACCTAA+TGG 0.419290 6.1:+79432642 MS.gene064043:CDS
GATACTCAGCCCTGAATATA+GGG 0.422079 6.1:-79433411 None:intergenic
TCTTGTAATCCTCGGGTACA+TGG 0.424056 6.1:-79433131 None:intergenic
CAATCTTCGGTATTCCTCAT+AGG 0.426870 6.1:-79432590 None:intergenic
CAACCAAGTTGAATGTTTCC+GGG 0.429777 6.1:+79432841 MS.gene064043:CDS
CTAATGGCAGGGTCACTCTC+TGG 0.433291 6.1:+79432658 MS.gene064043:CDS
GTTGTTCCATCTGCGGCCAT+TGG 0.439759 6.1:+79433526 MS.gene064043:CDS
TAGAATTTCAAACCCGCGTA+TGG 0.453141 6.1:-79433087 None:intergenic
GCTACGAAACTCAGTTCTTC+GGG 0.457628 6.1:-79432375 None:intergenic
GCTGAGTATCAATTACATAA+AGG 0.458191 6.1:+79433424 MS.gene064043:CDS
CCGGAAACATTCAACTTGGT+TGG 0.459591 6.1:-79432840 None:intergenic
ATAAAATGAAGGCCGGCATA+AGG 0.475533 6.1:-79432565 None:intergenic
GCCAAAGAACTTCTTGCTGG+TGG 0.476313 6.1:+79430842 MS.gene064043:CDS
CTGAAGAAGCCGAATTAAAA+GGG 0.496661 6.1:+79433342 MS.gene064043:CDS
TGATTGCTCAAAAGCAAGGC+TGG 0.499574 6.1:+79433384 MS.gene064043:CDS
GTAGAACCCCAAAAGGCCTT+CGG 0.502499 6.1:-79432435 None:intergenic
CATCCCGGAAACATTCAACT+TGG 0.504867 6.1:-79432844 None:intergenic
CTTGCTGGTGGTCTTGCTGG+TGG 0.505519 6.1:+79430854 MS.gene064043:CDS
GCCTTTCCTAATGTTTGGAA+AGG 0.519689 6.1:+79432622 MS.gene064043:CDS
CAGGACTGTCTGGATCAGTT+AGG 0.522724 6.1:+79432399 MS.gene064043:CDS
GCAAGGATTATTCCTTATGC+CGG 0.522819 6.1:+79432553 MS.gene064043:CDS
AGGCTTGCATGATCAATCTT+CGG 0.527031 6.1:-79432603 None:intergenic
GCTGGAAGACCCTATATTCA+GGG 0.527168 6.1:+79433402 MS.gene064043:CDS
CCTACCCTTGACCTAATGGC+AGG 0.530791 6.1:+79432646 MS.gene064043:CDS
AGGGTCACTCTCTGGAGGGA+CGG 0.530967 6.1:+79432666 MS.gene064043:CDS
AGTACCATCAAGAGATGAAG+TGG 0.531658 6.1:+79433585 MS.gene064043:CDS
GAATGTCTGACCCAATAAAC+CGG 0.532252 6.1:-79433190 None:intergenic
GTGAAGCCAATGGCCGCAGA+TGG 0.532601 6.1:-79433532 None:intergenic
CTCACATGTGGATCCGTGGC+CGG 0.536964 6.1:+79433171 MS.gene064043:CDS
ACCTTTCCAAACATTAGGAA+AGG 0.538316 6.1:-79432623 None:intergenic
AGAAGTTCTTTGGCAAAGAG+AGG 0.540450 6.1:-79430833 None:intergenic
TTGTTCATTATTTACCATCC+CGG 0.540691 6.1:-79432859 None:intergenic
AGAGGTCTCTATAGGGGAGT+AGG 0.544211 6.1:+79432936 MS.gene064043:CDS
CGGCTTCTTCAGATGCCGCA+AGG 0.546244 6.1:-79433331 None:intergenic
GGGAATATTCCAAAGAGTGT+TGG 0.546636 6.1:-79433066 None:intergenic
AGAACTGAGTTTCGTAGCGC+AGG 0.553711 6.1:+79432380 MS.gene064043:CDS
CCTCATAGGACATAAAATGA+AGG 0.553910 6.1:-79432576 None:intergenic
TTAGTCCGAATTAAGTCAAG+TGG 0.558808 6.1:-79432706 None:intergenic
AAAAGGGACTATGAGATCCA+TGG 0.560595 6.1:+79433358 MS.gene064043:CDS
AGAATTTCAAACCCGCGTAT+GGG 0.562448 6.1:-79433086 None:intergenic
AGTTGTCAGGAGGCAAATGC+AGG 0.565986 6.1:+79433227 MS.gene064043:CDS
AGGGATGTGATCGAGTATGG+TGG 0.566765 6.1:-79430813 None:intergenic
TCTACCTGTAGAACCCCAAA+AGG 0.568287 6.1:-79432442 None:intergenic
AATTCAGGTTGTTCCATCTG+CGG 0.571625 6.1:+79433519 MS.gene064043:intron
CAGGGGAAATGGAGCAAGTG+TGG 0.576065 6.1:+79432531 MS.gene064043:intron
TGCCTCCTGACAACTTCAAG+AGG 0.577185 6.1:-79433219 None:intergenic
CAAGTTGAATGTTTCCGGGA+TGG 0.578268 6.1:+79432845 MS.gene064043:CDS
GTGACCCTGCCATTAGGTCA+AGG 0.580517 6.1:-79432651 None:intergenic
ATAATGAACAAGTTTATCGA+GGG 0.581693 6.1:+79432871 MS.gene064043:CDS
CTTTGGAATATTCCCATACG+CGG 0.582745 6.1:+79433074 MS.gene064043:CDS
GAAGTTCTTTGGCAAAGAGA+GGG 0.587372 6.1:-79430832 None:intergenic
ATAGGACATAAAATGAAGGC+CGG 0.600028 6.1:-79432572 None:intergenic
GGCATTAGAGGTCTCTATAG+GGG 0.605826 6.1:+79432930 MS.gene064043:CDS
AATAATGAACAAGTTTATCG+AGG 0.610108 6.1:+79432870 MS.gene064043:CDS
ATGGCAGGGTCACTCTCTGG+AGG 0.610692 6.1:+79432661 MS.gene064043:CDS
TGACCCTGCCATTAGGTCAA+GGG 0.610872 6.1:-79432650 None:intergenic
GAAACTCACATGTGGATCCG+TGG 0.613310 6.1:+79433167 MS.gene064043:CDS
AGGAGAATCGCCAAAACCGA+AGG 0.618278 6.1:+79432419 MS.gene064043:CDS
ATCATAAACTGTGAAGCCAA+TGG 0.621650 6.1:-79433542 None:intergenic
CTGACCCAATAAACCGGCCA+CGG 0.624628 6.1:-79433184 None:intergenic
GAAATGGAGCAAGTGTGGCA+AGG 0.627350 6.1:+79432536 MS.gene064043:CDS
CTACCCTTGACCTAATGGCA+GGG 0.629539 6.1:+79432647 MS.gene064043:CDS
GGATTACAAGAAAAGCATCA+TGG 0.633750 6.1:+79433143 MS.gene064043:CDS
TGGCAGGGTCACTCTCTGGA+GGG 0.638491 6.1:+79432662 MS.gene064043:CDS
TTTGGAATATTCCCATACGC+GGG 0.647148 6.1:+79433075 MS.gene064043:CDS
AATGAAGCGCCATGTACCCG+AGG 0.665599 6.1:+79433122 MS.gene064043:CDS
CCTGCCATTAGGTCAAGGGT+AGG 0.672225 6.1:-79432646 None:intergenic
ATCCTCTTGAAGTTGTCAGG+AGG 0.680873 6.1:+79433217 MS.gene064043:CDS
TGACTAGGTTCAAAACCTTG+CGG 0.687829 6.1:+79433316 MS.gene064043:intron
ATCATGGCGAAACTCACATG+TGG 0.699503 6.1:+79433159 MS.gene064043:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTGAGAAATGAAAT+TGG + chr6.1:79431987-79432006 MS.gene064043:intron 15.0%
!! TTCATTTCTCAAATTATTAT+CGG - chr6.1:79431985-79432004 None:intergenic 15.0%
!! AATAATTAGATATGTTGTGT+TGG + chr6.1:79431485-79431504 MS.gene064043:intron 20.0%
!! AGTTGAGAATGATAATTATA+AGG - chr6.1:79432159-79432178 None:intergenic 20.0%
!! CTTTCAAAAACTTATAAAGA+GGG + chr6.1:79432906-79432925 MS.gene064043:CDS 20.0%
!! GTTGAGAATGATAATTATAA+GGG - chr6.1:79432158-79432177 None:intergenic 20.0%
!! TAACAAAAGAAAAAACAAGA+AGG - chr6.1:79431055-79431074 None:intergenic 20.0%
!! TCTTTCAAAAACTTATAAAG+AGG + chr6.1:79432905-79432924 MS.gene064043:CDS 20.0%
!!! TCATTTTCTCATATCATTAT+CGG - chr6.1:79430993-79431012 None:intergenic 20.0%
!!! TTTGAAATTCTACTTTTATG+AGG + chr6.1:79433098-79433117 MS.gene064043:CDS 20.0%
! AAATCCTTAGTTATACAGAA+CGG - chr6.1:79433493-79433512 None:intergenic 25.0%
! AATAATGAACAAGTTTATCG+AGG + chr6.1:79432870-79432889 MS.gene064043:CDS 25.0%
! AATTTAAATCTGCTTGTGTT+TGG + chr6.1:79432963-79432982 MS.gene064043:intron 25.0%
! ATAATGAACAAGTTTATCGA+GGG + chr6.1:79432871-79432890 MS.gene064043:CDS 25.0%
! CTAGTAAAAAAATGAGATCT+TGG + chr6.1:79431806-79431825 MS.gene064043:intron 25.0%
! TAGAACTCTTATGTTAATCA+TGG + chr6.1:79433035-79433054 MS.gene064043:intron 25.0%
! TAGTTATAGTTACAGACATA+AGG + chr6.1:79431752-79431771 MS.gene064043:intron 25.0%
! TTAATCAATCTATGGTCAAT+TGG - chr6.1:79432335-79432354 None:intergenic 25.0%
! TTGAATCATTGAAAGTCAAT+GGG + chr6.1:79431578-79431597 MS.gene064043:intron 25.0%
! TTTGAATTTCTTACGAAAGA+GGG + chr6.1:79431196-79431215 MS.gene064043:intron 25.0%
!! TTTTGAATTTCTTACGAAAG+AGG + chr6.1:79431195-79431214 MS.gene064043:intron 25.0%
!!! ATTATTATTGATGTCGACTT+CGG - chr6.1:79431864-79431883 None:intergenic 25.0%
!!! GCATTGTGATTTTGAAAAAT+AGG + chr6.1:79431923-79431942 MS.gene064043:intron 25.0%
!!! TAAGGATTTTTTTGCAATTC+AGG + chr6.1:79433504-79433523 MS.gene064043:intron 25.0%
ACAAAATACAACCAAAGTCA+TGG - chr6.1:79432785-79432804 None:intergenic 30.0%
ACTAGCATAAAACCTACAAT+AGG - chr6.1:79431781-79431800 None:intergenic 30.0%
CTAGCATAAAACCTACAATA+GGG - chr6.1:79431780-79431799 None:intergenic 30.0%
CTTATCCACTTGACTTAATT+CGG + chr6.1:79432701-79432720 MS.gene064043:CDS 30.0%
CTTATGTAACAGTAATGGTT+AGG - chr6.1:79431647-79431666 None:intergenic 30.0%
CTTGAATCATTGAAAGTCAA+TGG + chr6.1:79431577-79431596 MS.gene064043:intron 30.0%
CTTGTATGAGTTAGTTAGTT+AGG + chr6.1:79431284-79431303 MS.gene064043:intron 30.0%
GATTGCGATTAATCAATCTA+TGG - chr6.1:79432343-79432362 None:intergenic 30.0%
GCTGAGTATCAATTACATAA+AGG + chr6.1:79433424-79433443 MS.gene064043:CDS 30.0%
TACAGGTAGATAGAAATCAT+AGG + chr6.1:79432455-79432474 MS.gene064043:intron 30.0%
TCAAAAACTTATAAAGAGGG+TGG + chr6.1:79432909-79432928 MS.gene064043:CDS 30.0%
TGAATCATTGAAAGTCAATG+GGG + chr6.1:79431579-79431598 MS.gene064043:intron 30.0%
TTGTTCATTATTTACCATCC+CGG - chr6.1:79432862-79432881 None:intergenic 30.0%
! AAGAGGGTAACTTTTTATGA+AGG + chr6.1:79431212-79431231 MS.gene064043:intron 30.0%
! ACTAACTTACTAACTGATTC+AGG - chr6.1:79431736-79431755 None:intergenic 30.0%
!! TCTCATAGTCCCTTTTAATT+CGG - chr6.1:79433354-79433373 None:intergenic 30.0%
!!! GTACAGTTACAGACATTTTT+TGG + chr6.1:79431306-79431325 MS.gene064043:intron 30.0%
ACCAATGTGAAGTTATTTGC+AGG + chr6.1:79432512-79432531 MS.gene064043:intron 35.0%
ACCTTTCCAAACATTAGGAA+AGG - chr6.1:79432626-79432645 None:intergenic 35.0%
ACGTCTCAAAATTCTCTTTC+AGG + chr6.1:79430907-79430926 MS.gene064043:CDS 35.0%
AGAACCGTTCTGTATAACTA+AGG + chr6.1:79433486-79433505 MS.gene064043:intron 35.0%
ATAGGACATAAAATGAAGGC+CGG - chr6.1:79432575-79432594 None:intergenic 35.0%
ATCATAAACTGTGAAGCCAA+TGG - chr6.1:79433545-79433564 None:intergenic 35.0%
CAATGTGAAGTTATTTGCAG+GGG + chr6.1:79432514-79432533 MS.gene064043:intron 35.0%
CACATAAATAGAGATGTGTC+TGG - chr6.1:79431533-79431552 None:intergenic 35.0%
CATTGCATGCAATTAGTGAA+TGG + chr6.1:79432290-79432309 MS.gene064043:intron 35.0%
CCAATGTGAAGTTATTTGCA+GGG + chr6.1:79432513-79432532 MS.gene064043:intron 35.0%
CCACTCTTATGTAACAGTAA+TGG - chr6.1:79431652-79431671 None:intergenic 35.0%
CCATTACTGTTACATAAGAG+TGG + chr6.1:79431649-79431668 MS.gene064043:intron 35.0%
CCTCATAGGACATAAAATGA+AGG - chr6.1:79432579-79432598 None:intergenic 35.0%
CTAACTAACTCATACAAGTG+AGG - chr6.1:79431282-79431301 None:intergenic 35.0%
CTGAAGAAGCCGAATTAAAA+GGG + chr6.1:79433342-79433361 MS.gene064043:CDS 35.0%
GATACAAAGTTAACCTGACT+AGG + chr6.1:79433301-79433320 MS.gene064043:intron 35.0%
GGTAGATAGAAATCATAGGT+AGG + chr6.1:79432459-79432478 MS.gene064043:intron 35.0%
GTCATGGATGAAAACTGATT+TGG - chr6.1:79432769-79432788 None:intergenic 35.0%
TCTGAAGAAGCCGAATTAAA+AGG + chr6.1:79433341-79433360 MS.gene064043:CDS 35.0%
TGAATGACACTGAAACTCAA+TGG + chr6.1:79431138-79431157 MS.gene064043:intron 35.0%
TTAGTCCGAATTAAGTCAAG+TGG - chr6.1:79432709-79432728 None:intergenic 35.0%
! ATGCTTTTCTTGTAATCCTC+GGG - chr6.1:79433141-79433160 None:intergenic 35.0%
! CCTTCATTTTATGTCCTATG+AGG + chr6.1:79432576-79432595 MS.gene064043:CDS 35.0%
! CTCAAAATTCTCTTTCAGGT+AGG + chr6.1:79430911-79430930 MS.gene064043:intron 35.0%
! CTTTTGAGCAATCAAAACCA+TGG - chr6.1:79433378-79433397 None:intergenic 35.0%
! GATGCTTTTCTTGTAATCCT+CGG - chr6.1:79433142-79433161 None:intergenic 35.0%
! TCAGTTTTCATCCATGACTT+TGG + chr6.1:79432771-79432790 MS.gene064043:intron 35.0%
!! AAGAAGGAAGTTTTGTAGCA+CGG - chr6.1:79431039-79431058 None:intergenic 35.0%
!! GGATTACAAGAAAAGCATCA+TGG + chr6.1:79433143-79433162 MS.gene064043:CDS 35.0%
!! TGTCAATTTGTGTTTGGTGT+TGG - chr6.1:79431954-79431973 None:intergenic 35.0%
!!! AGAATTTTGAGACGTTCAAG+AGG - chr6.1:79430902-79430921 None:intergenic 35.0%
!!! GTTTTGATTGCTCAAAAGCA+AGG + chr6.1:79433380-79433399 MS.gene064043:CDS 35.0%
AAAAGGGACTATGAGATCCA+TGG + chr6.1:79433358-79433377 MS.gene064043:CDS 40.0%
AATGGTCGGAAACAGAAACA+TGG + chr6.1:79432262-79432281 MS.gene064043:intron 40.0%
AGAAGTTCTTTGGCAAAGAG+AGG - chr6.1:79430836-79430855 None:intergenic 40.0%
AGAATTTCAAACCCGCGTAT+GGG - chr6.1:79433089-79433108 None:intergenic 40.0%
AGGCTTGCATGATCAATCTT+CGG - chr6.1:79432606-79432625 None:intergenic 40.0%
AGTACCATCAAGAGATGAAG+TGG + chr6.1:79433585-79433604 MS.gene064043:CDS 40.0%
ATAAAATGAAGGCCGGCATA+AGG - chr6.1:79432568-79432587 None:intergenic 40.0%
CAATCTTCGGTATTCCTCAT+AGG - chr6.1:79432593-79432612 None:intergenic 40.0%
CATATCCTCTTGAAGTTGTC+AGG + chr6.1:79433214-79433233 MS.gene064043:CDS 40.0%
CCCTGCAAATAACTTCACAT+TGG - chr6.1:79432516-79432535 None:intergenic 40.0%
GAAGTTATTTGCAGGGGAAA+TGG + chr6.1:79432520-79432539 MS.gene064043:intron 40.0%
GAAGTTCTTTGGCAAAGAGA+GGG - chr6.1:79430835-79430854 None:intergenic 40.0%
GAATGTCTGACCCAATAAAC+CGG - chr6.1:79433193-79433212 None:intergenic 40.0%
GATACTCAGCCCTGAATATA+GGG - chr6.1:79433414-79433433 None:intergenic 40.0%
GCAAGGATTATTCCTTATGC+CGG + chr6.1:79432553-79432572 MS.gene064043:CDS 40.0%
GCCTTTCCTAATGTTTGGAA+AGG + chr6.1:79432622-79432641 MS.gene064043:CDS 40.0%
GTAGGACCTTTCCAAACATT+AGG - chr6.1:79432631-79432650 None:intergenic 40.0%
TAGAATTTCAAACCCGCGTA+TGG - chr6.1:79433090-79433109 None:intergenic 40.0%
TAGTCCACTTCATCTCTTGA+TGG - chr6.1:79433592-79433611 None:intergenic 40.0%
TATAAAGAGGGTGGCATTAG+AGG + chr6.1:79432918-79432937 MS.gene064043:CDS 40.0%
TCGTCGTGTCAATTTGTGTT+TGG - chr6.1:79431960-79431979 None:intergenic 40.0%
TGACTAGGTTCAAAACCTTG+CGG + chr6.1:79433316-79433335 MS.gene064043:intron 40.0%
TGATACTCAGCCCTGAATAT+AGG - chr6.1:79433415-79433434 None:intergenic 40.0%
TGCAAGCCTTTCCTAATGTT+TGG + chr6.1:79432617-79432636 MS.gene064043:CDS 40.0%
TGGCATTAGAGGTCTCTATA+GGG + chr6.1:79432929-79432948 MS.gene064043:CDS 40.0%
TTTGCCAAAGAACTTCTTGC+TGG + chr6.1:79430839-79430858 MS.gene064043:CDS 40.0%
! AAGAGGAGCAACAACAGTTT+TGG - chr6.1:79430885-79430904 None:intergenic 40.0%
! CAACCAAGTTGAATGTTTCC+GGG + chr6.1:79432841-79432860 MS.gene064043:CDS 40.0%
! CCAACCAAGTTGAATGTTTC+CGG + chr6.1:79432840-79432859 MS.gene064043:CDS 40.0%
! CTCATATCATTATCGGTGTC+CGG - chr6.1:79430986-79431005 None:intergenic 40.0%
! GACATAAGGTACCCTATTGT+AGG + chr6.1:79431766-79431785 MS.gene064043:intron 40.0%
! GCATTAAGTACCGTATGGTA+CGG + chr6.1:79431353-79431372 MS.gene064043:intron 40.0%
! GGGAATATTCCAAAGAGTGT+TGG - chr6.1:79433069-79433088 None:intergenic 40.0%
! GTCGGATATCTGAGAAGTAT+CGG + chr6.1:79432057-79432076 MS.gene064043:intron 40.0%
! TACAGGCATTAAGTACCGTA+TGG + chr6.1:79431348-79431367 MS.gene064043:intron 40.0%
! TCGGACTAAGTTAGCTTATC+AGG + chr6.1:79432720-79432739 MS.gene064043:CDS 40.0%
! TGCAGGTAACGTGCTTTATT+TGG + chr6.1:79433244-79433263 MS.gene064043:intron 40.0%
! TTTGGAATATTCCCATACGC+GGG + chr6.1:79433075-79433094 MS.gene064043:CDS 40.0%
!! AATTCAGGTTGTTCCATCTG+CGG + chr6.1:79433519-79433538 MS.gene064043:intron 40.0%
!! CTTTGGAATATTCCCATACG+CGG + chr6.1:79433074-79433093 MS.gene064043:CDS 40.0%
!! GGTAACGTGCTTTATTTGGT+CGG + chr6.1:79433248-79433267 MS.gene064043:intron 40.0%
!! TGAAGCATTGACACTAGACA+CGG + chr6.1:79431835-79431854 MS.gene064043:intron 40.0%
!!! CAGACATTTTTTGGTTCTCG+AGG + chr6.1:79431315-79431334 MS.gene064043:intron 40.0%
ACCACCAGCAAGAAGTTCTT+TGG - chr6.1:79430846-79430865 None:intergenic 45.0%
ATCATGGCGAAACTCACATG+TGG + chr6.1:79433159-79433178 MS.gene064043:CDS 45.0%
ATCCTCTTGAAGTTGTCAGG+AGG + chr6.1:79433217-79433236 MS.gene064043:CDS 45.0%
CATCCCGGAAACATTCAACT+TGG - chr6.1:79432847-79432866 None:intergenic 45.0%
CCGGAAACATTCAACTTGGT+TGG - chr6.1:79432843-79432862 None:intergenic 45.0%
CGCTACGAAACTCAGTTCTT+CGG - chr6.1:79432379-79432398 None:intergenic 45.0%
CTAGGATAGACCGTACCATA+CGG - chr6.1:79431366-79431385 None:intergenic 45.0%
GATCATAGCAGCTACTAGCT+AGG - chr6.1:79431384-79431403 None:intergenic 45.0%
GCTACGAAACTCAGTTCTTC+GGG - chr6.1:79432378-79432397 None:intergenic 45.0%
GCTGGAAGACCCTATATTCA+GGG + chr6.1:79433402-79433421 MS.gene064043:CDS 45.0%
GGCATTAGAGGTCTCTATAG+GGG + chr6.1:79432930-79432949 MS.gene064043:CDS 45.0%
GGTCGGCTGGAAATTATAGA+TGG + chr6.1:79433265-79433284 MS.gene064043:intron 45.0%
GTGGCATTAGAGGTCTCTAT+AGG + chr6.1:79432928-79432947 MS.gene064043:CDS 45.0%
GTGTAAGATTGCGCAAGTGT+GGG + chr6.1:79432234-79432253 MS.gene064043:intron 45.0%
TCAATATCAACGTGTCGTGC+TGG - chr6.1:79431436-79431455 None:intergenic 45.0%
TCTACCTGTAGAACCCCAAA+AGG - chr6.1:79432445-79432464 None:intergenic 45.0%
TCTTGTAATCCTCGGGTACA+TGG - chr6.1:79433134-79433153 None:intergenic 45.0%
TGATTGCTCAAAAGCAAGGC+TGG + chr6.1:79433384-79433403 MS.gene064043:CDS 45.0%
TGTAAGATTGCGCAAGTGTG+GGG + chr6.1:79432235-79432254 MS.gene064043:intron 45.0%
TGTGTAAGATTGCGCAAGTG+TGG + chr6.1:79432233-79432252 MS.gene064043:intron 45.0%
! AAGTGTGGGGAGATAATGGT+CGG + chr6.1:79432248-79432267 MS.gene064043:intron 45.0%
! ACGTCTTCCACAAGAAGTGT+CGG + chr6.1:79432082-79432101 MS.gene064043:intron 45.0%
! CAAGTTGAATGTTTCCGGGA+TGG + chr6.1:79432845-79432864 MS.gene064043:CDS 45.0%
! CTCGAGGAAAGTACAGTTAC+AGG + chr6.1:79431331-79431350 MS.gene064043:intron 45.0%
!! GAAGCATTGACACTAGACAC+GGG + chr6.1:79431836-79431855 MS.gene064043:intron 45.0%
!! TTGTGTTGGTGTCATCGAGA+CGG + chr6.1:79431499-79431518 MS.gene064043:intron 45.0%
!!! GCAAGGTTTTGAACCTAGTC+AGG - chr6.1:79433317-79433336 None:intergenic 45.0%
AGAACTGAGTTTCGTAGCGC+AGG + chr6.1:79432380-79432399 MS.gene064043:CDS 50.0%
AGAGGTCTCTATAGGGGAGT+AGG + chr6.1:79432936-79432955 MS.gene064043:CDS 50.0%
AGGAGAATCGCCAAAACCGA+AGG + chr6.1:79432419-79432438 MS.gene064043:CDS 50.0%
AGGGATGTGATCGAGTATGG+TGG - chr6.1:79430816-79430835 None:intergenic 50.0%
AGGTCCTACCCTTGACCTAA+TGG + chr6.1:79432642-79432661 MS.gene064043:CDS 50.0%
AGTTGTCAGGAGGCAAATGC+AGG + chr6.1:79433227-79433246 MS.gene064043:CDS 50.0%
CAGGACTGTCTGGATCAGTT+AGG + chr6.1:79432399-79432418 MS.gene064043:CDS 50.0%
CTACCCTTGACCTAATGGCA+GGG + chr6.1:79432647-79432666 MS.gene064043:CDS 50.0%
GAAACTCACATGTGGATCCG+TGG + chr6.1:79433167-79433186 MS.gene064043:CDS 50.0%
GAAATGGAGCAAGTGTGGCA+AGG + chr6.1:79432536-79432555 MS.gene064043:CDS 50.0%
GAGAGGGATGTGATCGAGTA+TGG - chr6.1:79430819-79430838 None:intergenic 50.0%
GCCAAAGAACTTCTTGCTGG+TGG + chr6.1:79430842-79430861 MS.gene064043:CDS 50.0%
GGCTGGAAGACCCTATATTC+AGG + chr6.1:79433401-79433420 MS.gene064043:CDS 50.0%
GTAGAACCCCAAAAGGCCTT+CGG - chr6.1:79432438-79432457 None:intergenic 50.0%
GTCAATGCTGGACAACGACA+CGG - chr6.1:79432033-79432052 None:intergenic 50.0%
TATCCGACACGTGTCAATGC+TGG - chr6.1:79432045-79432064 None:intergenic 50.0%
TGACCCTGCCATTAGGTCAA+GGG - chr6.1:79432653-79432672 None:intergenic 50.0%
TGCCTCCTGACAACTTCAAG+AGG - chr6.1:79433222-79433241 None:intergenic 50.0%
! CCAAAACCGAAGGCCTTTTG+GGG + chr6.1:79432429-79432448 MS.gene064043:CDS 50.0%
! GCCAAAACCGAAGGCCTTTT+GGG + chr6.1:79432428-79432447 MS.gene064043:CDS 50.0%
! TGTCGGTGCTTCGCGTAAAA+AGG - chr6.1:79430957-79430976 None:intergenic 50.0%
!! ACGTGCTTTATTTGGTCGGC+TGG + chr6.1:79433252-79433271 MS.gene064043:intron 50.0%
!! TCCAAAGAGTGTTGGAGCTG+TGG - chr6.1:79433061-79433080 None:intergenic 50.0%
!! TGTCCAGCATTGACACGTGT+CGG + chr6.1:79432039-79432058 MS.gene064043:intron 50.0%
!!! AAGGCCTTTTGGGGTTCTAC+AGG + chr6.1:79432438-79432457 MS.gene064043:CDS 50.0%
CAGAGAGTGACCCTGCCATT+AGG - chr6.1:79432660-79432679 None:intergenic 55.0%
CAGGGGAAATGGAGCAAGTG+TGG + chr6.1:79432531-79432550 MS.gene064043:intron 55.0%
CCTACCCTTGACCTAATGGC+AGG + chr6.1:79432646-79432665 MS.gene064043:CDS 55.0%
CCTGCCATTAGGTCAAGGGT+AGG - chr6.1:79432649-79432668 None:intergenic 55.0%
CTAATGGCAGGGTCACTCTC+TGG + chr6.1:79432658-79432677 MS.gene064043:CDS 55.0%
CTGACCCAATAAACCGGCCA+CGG - chr6.1:79433187-79433206 None:intergenic 55.0%
GCCACAGCTCCAACACTCTT+TGG + chr6.1:79433057-79433076 MS.gene064043:intron 55.0%
GCGCAAGTGTGGGGAGATAA+TGG + chr6.1:79432244-79432263 MS.gene064043:intron 55.0%
GTGACCCTGCCATTAGGTCA+AGG - chr6.1:79432654-79432673 None:intergenic 55.0%
GTTGTTCCATCTGCGGCCAT+TGG + chr6.1:79433526-79433545 MS.gene064043:CDS 55.0%
TTTCGTAGCGCAGGACTGTC+TGG + chr6.1:79432389-79432408 MS.gene064043:CDS 55.0%
! AATGAAGCGCCATGTACCCG+AGG + chr6.1:79433122-79433141 MS.gene064043:CDS 55.0%
! CCCCAAAAGGCCTTCGGTTT+TGG - chr6.1:79432432-79432451 None:intergenic 55.0%
! CGCCAAAACCGAAGGCCTTT+TGG + chr6.1:79432427-79432446 MS.gene064043:CDS 55.0%
! CTTCTTGCTGGTGGTCTTGC+TGG + chr6.1:79430851-79430870 MS.gene064043:CDS 55.0%
! GGATCCGTGGCCGGTTTATT+GGG + chr6.1:79433180-79433199 MS.gene064043:CDS 55.0%
! TGGATCCGTGGCCGGTTTAT+TGG + chr6.1:79433179-79433198 MS.gene064043:CDS 55.0%
!! CGTAGCACCGACACTTCTTG+TGG - chr6.1:79432092-79432111 None:intergenic 55.0%
ATGGCAGGGTCACTCTCTGG+AGG + chr6.1:79432661-79432680 MS.gene064043:CDS 60.0%
CGGCTTCTTCAGATGCCGCA+AGG - chr6.1:79433334-79433353 None:intergenic 60.0%
CTCACATGTGGATCCGTGGC+CGG + chr6.1:79433171-79433190 MS.gene064043:CDS 60.0%
GTGAAGCCAATGGCCGCAGA+TGG - chr6.1:79433535-79433554 None:intergenic 60.0%
TGGCAGGGTCACTCTCTGGA+GGG + chr6.1:79432662-79432681 MS.gene064043:CDS 60.0%
! AGGGTCACTCTCTGGAGGGA+CGG + chr6.1:79432666-79432685 MS.gene064043:CDS 60.0%
! CTTGCTGGTGGTCTTGCTGG+TGG + chr6.1:79430854-79430873 MS.gene064043:CDS 60.0%
! TCGGTGTCCGGTGTCTGTGT+CGG - chr6.1:79430974-79430993 None:intergenic 60.0%
!! CGAAGCACCGACACAGACAC+CGG + chr6.1:79430964-79430983 MS.gene064043:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 79430776 79433612 79430776 ID=MS.gene064043
chr6.1 mRNA 79430776 79433612 79430776 ID=MS.gene064043.t1;Parent=MS.gene064043
chr6.1 exon 79430776 79430928 79430776 ID=MS.gene064043.t1.exon1;Parent=MS.gene064043.t1
chr6.1 CDS 79430776 79430928 79430776 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79432374 79432459 79432374 ID=MS.gene064043.t1.exon2;Parent=MS.gene064043.t1
chr6.1 CDS 79432374 79432459 79432374 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79432534 79432741 79432534 ID=MS.gene064043.t1.exon3;Parent=MS.gene064043.t1
chr6.1 CDS 79432534 79432741 79432534 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79432831 79432957 79432831 ID=MS.gene064043.t1.exon4;Parent=MS.gene064043.t1
chr6.1 CDS 79432831 79432957 79432831 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79433064 79433248 79433064 ID=MS.gene064043.t1.exon5;Parent=MS.gene064043.t1
chr6.1 CDS 79433064 79433248 79433064 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79433323 79433445 79433323 ID=MS.gene064043.t1.exon6;Parent=MS.gene064043.t1
chr6.1 CDS 79433323 79433445 79433323 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
chr6.1 exon 79433526 79433612 79433526 ID=MS.gene064043.t1.exon7;Parent=MS.gene064043.t1
chr6.1 CDS 79433526 79433612 79433526 ID=cds.MS.gene064043.t1;Parent=MS.gene064043.t1
Gene Sequence

>MS.gene064043

ATGGCAGCATCAGCATCATCATCAGATGAGAGAGAATCCACCATACTCGATCACATCCCTCTCTTTGCCAAAGAACTTCTTGCTGGTGGTCTTGCTGGTGGCTTTGCCAAAACTGTTGTTGCTCCTCTTGAACGTCTCAAAATTCTCTTTCAGGTAGGTACTTTAATAGTTTAATTCTCCTTTTTACGCGAAGCACCGACACAGACACCGGACACCGATAATGATATGAGAAAATGACACAATTCTTTAATCAAAAATGTCCGTGCTACAAAACTTCCTTCTTGTTTTTTCTTTTGTTATGTTACGAAATGTGTTTGTGTGATTTGATTTAACGTGTGATCTGTTAATGTTTGATTAATCTTTGAATGACACTGAAACTCAATGGAAAATTTTAGAGAATGATGAAATCTTATTTAGTCTTTTGAATTTCTTACGAAAGAGGGTAACTTTTTATGAAGGTAGTTGAAACTTGAAATGCAGTTTAACTGCTTAGAATAAAAATACCTCACTTGTATGAGTTAGTTAGTTAGGTACAGTTACAGACATTTTTTGGTTCTCGAGGAAAGTACAGTTACAGGCATTAAGTACCGTATGGTACGGTCTATCCTAGCTAGTAGCTGCTATGATCTTGAATATTATCAAGTACAAATGCAGACACCAGCACGACACGTTGATATTGATAATGATTTGAGAAAATGAATTAATTGAAAATAATTAGATATGTTGTGTTGGTGTCATCGAGACGGATCAGACACCAGACACATCTCTATTTATGTGTAATCTATCTTATGTTTGATATATCTTGAATCATTGAAAGTCAATGGGGAATTTTAGAGAATAACAAAATCTGAGTTTTTGCATTCTAAGTCCTAACCATTACTGTTACATAAGAGTGGAATTTTTTGTACATGTAGCTGATGAACTTTAACTGCTTAAATTAACTCGAAAAGTAACTCACCTGAATCAGTTAGTAAGTTAGTTATAGTTACAGACATAAGGTACCCTATTGTAGGTTTTATGCTAGTACTAGCTAGTAAAAAAATGAGATCTTGGATACTATGAAGCATTGACACTAGACACGGGCTCCGAAGTCGACATCAATAATAATTTGAAAAAATGAATTAATTGAAATGTAATCACGTATGAAGCATTGTGATTTTGAAAAATAGGAAGCACCAACACCAAACACAAATTGACACGACGACACCGATAATAATTTGAGAAATGAAATTGGATGTAATCACATATGTGATACCGTGTCGTTGTCCAGCATTGACACGTGTCGGATATCTGAGAAGTATCGGATACGTCTTCCACAAGAAGTGTCGGTGCTACGTGTAATGTAATAATTTTGATTATACATCTCAATTTTATTCTTTCCCTTATAATTATCATTCTCAACTTTTCACTTCTAGCAGTATTTTTCTGTTATGCATACACTAGTAAAGTAAAGATATTGTGTAAGATTGCGCAAGTGTGGGGAGATAATGGTCGGAAACAGAAACATGGAATTTCATTGCATGCAATTAGTGAATGGCTTTTCTTAAACTAAGCGACCAATTGACCATAGATTGATTAATCGCAATCATATTTTGCAGACCCGAAGAACTGAGTTTCGTAGCGCAGGACTGTCTGGATCAGTTAGGAGAATCGCCAAAACCGAAGGCCTTTTGGGGTTCTACAGGTAGATAGAAATCATAGGTAGGTGATTTATCTTTAATCAATTAATCAGAATCACCAATGTGAAGTTATTTGCAGGGGAAATGGAGCAAGTGTGGCAAGGATTATTCCTTATGCCGGCCTTCATTTTATGTCCTATGAGGAATACCGAAGATTGATCATGCAAGCCTTTCCTAATGTTTGGAAAGGTCCTACCCTTGACCTAATGGCAGGGTCACTCTCTGGAGGGACGGCTGTGCTTTTTACTTATCCACTTGACTTAATTCGGACTAAGTTAGCTTATCAGGTAAATTATATTTCTGCTCAGAAACCAAATCAGTTTTCATCCATGACTTTGGTTGTATTTTGTGATTTCATGTGAAATTGAAACTGCAGATTGTTAGTCCAACCAAGTTGAATGTTTCCGGGATGGTAAATAATGAACAAGTTTATCGAGGGATCTGTGACTGTCTTTCAAAAACTTATAAAGAGGGTGGCATTAGAGGTCTCTATAGGGGAGTAGGTATGAATTTAAATCTGCTTGTGTTTGGAACTGTTAATTCAGCAGCAGTATTGTATTTCACTGCTGTGTTGTTATTGTAGAACTCTTATGTTAATCATGGCCACAGCTCCAACACTCTTTGGAATATTCCCATACGCGGGTTTGAAATTCTACTTTTATGAGGAAATGAAGCGCCATGTACCCGAGGATTACAAGAAAAGCATCATGGCGAAACTCACATGTGGATCCGTGGCCGGTTTATTGGGTCAGACATTCACATATCCTCTTGAAGTTGTCAGGAGGCAAATGCAGGTAACGTGCTTTATTTGGTCGGCTGGAAATTATAGATGGATATTTAGTACATGATACAAAGTTAACCTGACTAGGTTCAAAACCTTGCGGCATCTGAAGAAGCCGAATTAAAAGGGACTATGAGATCCATGGTTTTGATTGCTCAAAAGCAAGGCTGGAAGACCCTATATTCAGGGCTGAGTATCAATTACATAAAGGTGAGAAGAATCATAGAACATTAAAGCAAATTCACACTCTAGAACCGTTCTGTATAACTAAGGATTTTTTTGCAATTCAGGTTGTTCCATCTGCGGCCATTGGCTTCACAGTTTATGATACTATGAAATCATACTTGAGAGTACCATCAAGAGATGAAGTGGACTAA
Protein sequence

>MS.gene064043.t1

MAASASSSDERESTILDHIPLFAKELLAGGLAGGFAKTVVAPLERLKILFQTRRTEFRSAGLSGSVRRIAKTEGLLGFYRGNGASVARIIPYAGLHFMSYEEYRRLIMQAFPNVWKGPTLDLMAGSLSGGTAVLFTYPLDLIRTKLAYQIVSPTKLNVSGMVNNEQVYRGICDCLSKTYKEGGIRGLYRGVAPTLFGIFPYAGLKFYFYEEMKRHVPEDYKKSIMAKLTCGSVAGLLGQTFTYPLEVVRRQMQVQNLAASEEAELKGTMRSMVLIAQKQGWKTLYSGLSINYIKVVPSAAIGFTVYDTMKSYLRVPSRDEVD