AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030289

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030289.t1 MTR_6g091800 95.238 315 11 1 1 311 1 315 0.0 608
MS.gene030289.t1 MTR_6g091800 88.496 339 11 2 1 311 1 339 0.0 596
MS.gene030289.t1 MTR_6g091800 87.500 312 11 2 1 284 1 312 0.0 540
MS.gene030289.t1 MTR_6g034145 96.169 261 10 0 51 311 1 261 0.0 517
MS.gene030289.t1 MTR_6g091800 82.222 315 11 2 1 311 1 274 0.0 505
MS.gene030289.t1 MTR_6g091800 76.401 339 11 3 1 311 1 298 6.01e-178 493
MS.gene030289.t1 MTR_6g092210 90.421 261 19 1 51 311 1 255 4.40e-173 479
MS.gene030289.t1 MTR_6g091800 93.927 247 11 1 1 243 1 247 4.57e-169 470
MS.gene030289.t1 MTR_6g091800 27.404 208 124 6 110 305 18 210 5.79e-13 68.2
MS.gene030289.t1 MTR_6g091800 85.609 271 11 2 1 243 1 271 8.40e-164 457
MS.gene030289.t1 MTR_6g091910 88.614 202 21 1 110 311 18 217 3.20e-129 367
MS.gene030289.t1 MTR_6g091910 37.273 220 111 4 1 205 1 208 3.62e-31 116
MS.gene030289.t1 MTR_3g104600 55.063 316 131 4 5 309 21 336 3.80e-122 354
MS.gene030289.t1 MTR_6g091800 92.391 184 10 1 1 180 1 184 1.16e-119 342
MS.gene030289.t1 MTR_6g091800 81.731 208 10 2 1 180 1 208 1.34e-114 330
MS.gene030289.t1 MTR_5g009500 37.061 313 160 8 20 307 43 343 2.36e-54 181
MS.gene030289.t1 MTR_8g027975 33.438 317 168 7 20 307 56 358 1.13e-50 171
MS.gene030289.t1 MTR_7g064980 34.539 304 159 7 20 302 30 314 4.37e-47 161
MS.gene030289.t1 MTR_3g098460 30.903 288 177 5 20 302 210 480 2.28e-43 155
MS.gene030289.t1 MTR_3g098460 27.041 196 116 6 111 300 205 379 8.82e-13 68.9
MS.gene030289.t1 MTR_8g096050 31.944 288 174 6 20 302 232 502 2.06e-41 150
MS.gene030289.t1 MTR_8g096050 31.937 191 117 4 20 208 326 505 2.61e-22 97.4
MS.gene030289.t1 MTR_7g084400 32.203 295 167 6 19 302 213 485 3.34e-41 149
MS.gene030289.t1 MTR_1g012030 31.359 287 173 6 20 302 144 410 1.18e-39 144
MS.gene030289.t1 MTR_1g012030 29.592 196 120 5 12 203 227 408 3.09e-19 87.8
MS.gene030289.t1 MTR_1g012030 26.415 212 128 6 105 310 132 321 1.40e-12 68.2
MS.gene030289.t1 MTR_5g081150 33.775 302 170 6 18 302 33 321 1.92e-37 136
MS.gene030289.t1 MTR_3g107510 29.965 287 177 5 20 302 127 393 1.05e-36 135
MS.gene030289.t1 MTR_3g107510 24.390 205 128 5 111 310 122 304 9.71e-12 65.5
MS.gene030289.t1 MTR_7g068340 29.825 285 160 5 26 299 98 353 2.62e-35 131
MS.gene030289.t1 MTR_4g119770 27.640 322 181 6 20 303 19 326 1.32e-34 128
MS.gene030289.t1 MTR_4g119770 26.471 204 133 5 109 301 12 209 2.19e-16 79.0
MS.gene030289.t1 MTR_3g104500 28.617 311 184 9 15 304 30 323 2.42e-34 127
MS.gene030289.t1 MTR_3g104500 24.638 207 144 5 110 310 33 233 3.85e-14 72.4
MS.gene030289.t1 MTR_4g114320 28.276 290 178 6 20 302 128 394 3.93e-34 129
MS.gene030289.t1 MTR_4g114320 29.000 200 125 4 12 208 212 397 3.44e-17 81.6
MS.gene030289.t1 MTR_2g436930 26.730 318 185 6 20 302 20 324 1.43e-33 125
MS.gene030289.t1 MTR_2g436930 28.502 207 133 5 104 301 8 208 2.08e-19 87.4
MS.gene030289.t1 MTR_4g016730 29.310 290 152 6 26 299 100 352 1.51e-30 119
MS.gene030289.t1 MTR_8g090210 29.747 316 174 7 17 306 108 401 4.56e-29 115
MS.gene030289.t1 MTR_4g119770 28.794 257 138 5 20 245 19 261 1.48e-27 108
MS.gene030289.t1 MTR_4g119770 26.471 204 133 5 109 301 12 209 1.03e-16 78.6
MS.gene030289.t1 MTR_4g078545 29.097 299 187 7 15 299 71 358 6.67e-27 108
MS.gene030289.t1 MTR_3g074490 29.618 314 173 8 17 304 114 405 1.27e-26 108
MS.gene030289.t1 MTR_2g098070 28.094 299 190 7 15 299 62 349 1.60e-26 107
MS.gene030289.t1 MTR_7g109135 28.328 293 185 6 21 302 28 306 3.83e-26 105
MS.gene030289.t1 MTR_7g109135 29.703 202 129 6 113 311 24 215 1.52e-16 79.0
MS.gene030289.t1 MTR_4g005330 25.243 309 183 9 20 304 5 289 3.18e-25 102
MS.gene030289.t1 MTR_3g028590 28.094 299 190 7 15 299 93 380 6.92e-25 103
MS.gene030289.t1 MTR_4g005330 25.159 314 187 9 15 304 66 355 7.23e-25 103
MS.gene030289.t1 MTR_3g028590 28.094 299 190 7 15 299 89 376 7.92e-25 103
MS.gene030289.t1 MTR_5g081150 34.348 230 121 6 17 229 32 248 1.90e-24 99.8
MS.gene030289.t1 MTR_5g081150 27.632 228 140 7 93 309 16 229 6.43e-12 64.7
MS.gene030289.t1 MTR_5g081150 34.498 229 120 6 18 229 33 248 2.03e-24 99.8
MS.gene030289.t1 MTR_5g081150 27.632 228 140 7 93 309 16 229 5.82e-12 65.1
MS.gene030289.t1 MTR_8g107270 27.946 297 186 11 25 309 28 308 2.22e-24 100
MS.gene030289.t1 MTR_2g436930 26.316 247 148 4 78 303 2 235 5.89e-24 98.2
MS.gene030289.t1 MTR_2g436930 24.670 227 149 7 2 214 20 238 3.33e-12 65.5
MS.gene030289.t1 MTR_8g036880 27.759 299 192 7 15 299 98 386 9.41e-24 100
MS.gene030289.t1 MTR_1g087840 28.025 314 190 10 10 302 5 303 2.55e-23 97.8
MS.gene030289.t1 MTR_1g087840 28.646 192 122 7 124 311 32 212 2.29e-12 67.0
MS.gene030289.t1 MTR_7g109135 27.304 293 181 6 21 302 28 299 1.05e-22 96.3
MS.gene030289.t1 MTR_7g109135 27.723 202 126 6 113 311 24 208 6.49e-12 65.5
MS.gene030289.t1 MTR_7g084400 31.982 222 117 7 19 225 207 409 3.70e-22 96.3
MS.gene030289.t1 MTR_7g084400 26.531 196 119 5 111 300 207 383 1.41e-14 74.3
MS.gene030289.t1 MTR_5g055410 27.018 285 187 6 27 302 33 305 4.09e-22 95.5
MS.gene030289.t1 MTR_7g109135 26.971 241 156 5 68 302 2 228 5.09e-19 84.7
MS.gene030289.t1 MTR_8g076760 25.283 265 172 6 58 309 61 312 1.35e-17 82.0
MS.gene030289.t1 MTR_7g109135 29.032 186 112 5 123 302 36 207 3.30e-16 76.6
MS.gene030289.t1 MTR_8g098240 24.468 282 191 6 20 300 325 585 6.16e-16 78.6
MS.gene030289.t1 MTR_4g012850 26.736 288 171 11 9 277 1 267 9.72e-15 73.9
MS.gene030289.t1 MTR_4g012850 29.670 182 112 3 22 199 117 286 2.79e-14 72.4
MS.gene030289.t1 MTR_2g102010 30.481 187 112 3 28 208 123 297 2.20e-14 72.8
MS.gene030289.t1 MTR_8g066975 24.000 300 207 8 16 302 5 296 6.30e-14 71.2
MS.gene030289.t1 MTR_4g018750 22.152 316 215 8 1 303 1 298 8.02e-13 68.2
MS.gene030289.t1 MTR_4g018750 26.697 221 140 8 95 305 1 209 3.32e-11 63.5
MS.gene030289.t1 MTR_5g073040 25.763 295 185 9 20 303 44 315 8.03e-13 68.6
MS.gene030289.t1 MTR_7g117030 23.643 258 172 8 57 299 85 332 8.42e-13 68.6
MS.gene030289.t1 MTR_6g034515 26.452 155 109 1 57 211 198 347 1.35e-12 67.8
MS.gene030289.t1 MTR_6g034515 23.232 297 188 8 31 311 83 355 2.06e-11 64.3
MS.gene030289.t1 MTR_4g018750 24.016 254 169 7 1 241 1 243 4.09e-12 65.9
MS.gene030289.t1 MTR_4g018750 26.697 221 140 8 95 305 1 209 3.96e-11 63.2
MS.gene030289.t1 MTR_7g015870 26.904 197 118 4 24 208 135 317 1.10e-11 65.1
MS.gene030289.t1 MTR_3g025800 22.699 326 212 8 15 311 28 342 2.01e-11 64.3
MS.gene030289.t1 MTR_8g092080 29.353 201 123 6 22 221 139 321 2.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030289.t1 AT4G26180 67.722 316 95 3 1 309 1 316 6.54e-155 436
MS.gene030289.t1 AT4G26180 67.010 291 89 3 1 284 1 291 6.30e-140 397
MS.gene030289.t1 AT1G14560 56.113 319 128 4 1 308 9 326 6.36e-120 348
MS.gene030289.t1 AT1G14560 55.593 295 119 4 1 284 9 302 7.22e-106 311
MS.gene030289.t1 AT1G14560 56.769 229 91 3 87 308 1 228 1.59e-87 262
MS.gene030289.t1 AT1G14560 27.919 197 119 5 21 202 31 219 5.29e-13 67.8
MS.gene030289.t1 AT4G01100 35.443 316 163 7 20 307 47 349 1.53e-54 181
MS.gene030289.t1 AT4G01100 25.664 226 145 4 86 302 17 228 1.19e-18 85.5
MS.gene030289.t1 AT4G01100 34.936 312 162 7 24 307 1 299 1.21e-52 175
MS.gene030289.t1 AT4G01100 34.242 330 162 8 20 307 47 363 4.35e-52 175
MS.gene030289.t1 AT4G01100 24.514 257 149 5 69 302 8 242 1.01e-16 80.1
MS.gene030289.t1 AT2G37890 36.066 305 161 7 17 302 43 332 3.22e-48 164
MS.gene030289.t1 AT3G55640 35.505 307 164 8 16 303 35 326 4.55e-48 164
MS.gene030289.t1 AT3G55640 35.505 307 164 8 16 303 35 326 4.55e-48 164
MS.gene030289.t1 AT3G53940 33.993 303 169 7 20 306 78 365 1.10e-46 161
MS.gene030289.t1 AT5G61810 33.446 296 163 8 16 302 62 332 5.52e-45 156
MS.gene030289.t1 AT5G61810 30.366 191 115 3 20 208 161 335 2.21e-18 84.7
MS.gene030289.t1 AT5G61810 33.446 296 163 8 16 302 205 475 1.17e-43 155
MS.gene030289.t1 AT5G61810 30.366 191 115 3 20 208 304 478 4.25e-18 84.7
MS.gene030289.t1 AT5G07320 31.206 282 166 6 25 302 219 476 2.09e-41 150
MS.gene030289.t1 AT5G07320 27.835 194 116 4 20 208 305 479 2.09e-15 77.0
MS.gene030289.t1 AT5G07320 25.556 180 114 4 125 303 223 383 7.58e-11 63.2
MS.gene030289.t1 AT5G51050 31.164 292 172 7 20 304 228 497 8.84e-41 148
MS.gene030289.t1 AT5G51050 28.646 192 118 4 20 208 323 498 2.83e-15 76.6
MS.gene030289.t1 AT4G32400 32.753 287 169 5 20 302 119 385 4.17e-39 142
MS.gene030289.t1 AT4G32400 28.155 206 128 7 12 212 202 392 9.65e-15 74.7
MS.gene030289.t1 AT4G32400 25.616 203 125 4 111 309 114 294 2.14e-12 67.4
MS.gene030289.t1 AT5G56450 31.310 313 173 8 15 302 30 325 8.69e-38 137
MS.gene030289.t1 AT3G51870 29.720 286 159 5 26 299 102 357 1.45e-37 137
MS.gene030289.t1 AT5G48970 26.791 321 184 5 20 302 27 334 2.59e-34 128
MS.gene030289.t1 AT5G48970 27.723 202 133 4 109 302 20 216 2.36e-18 84.7
MS.gene030289.t1 AT5G01500 29.795 292 157 6 26 302 130 388 8.53e-34 128
MS.gene030289.t1 AT3G21390 27.812 320 181 5 20 302 24 330 5.28e-33 124
MS.gene030289.t1 AT3G21390 27.941 204 134 4 105 301 13 210 2.27e-17 81.6
MS.gene030289.t1 AT3G21390 27.726 321 182 5 20 303 46 353 6.20e-33 125
MS.gene030289.t1 AT3G21390 27.941 204 134 4 105 301 35 232 3.60e-17 81.3
MS.gene030289.t1 AT3G53940 35.111 225 116 6 20 229 78 287 1.59e-32 122
MS.gene030289.t1 AT3G53940 28.502 207 123 6 106 301 68 260 7.47e-13 68.2
MS.gene030289.t1 AT3G55640 36.481 233 114 8 16 229 35 252 2.97e-32 120
MS.gene030289.t1 AT3G55640 28.780 205 121 6 110 303 37 227 4.30e-16 77.0
MS.gene030289.t1 AT3G55640 36.481 233 114 8 16 229 35 252 2.97e-32 120
MS.gene030289.t1 AT3G55640 28.780 205 121 6 110 303 37 227 4.30e-16 77.0
MS.gene030289.t1 AT5G48970 27.881 269 157 4 58 302 8 263 3.11e-30 115
MS.gene030289.t1 AT5G64970 30.380 316 172 7 17 306 133 426 8.13e-29 115
MS.gene030289.t1 AT4G28390 29.808 312 188 8 8 299 66 366 8.23e-29 114
MS.gene030289.t1 AT4G28390 29.808 312 188 8 8 299 66 366 8.23e-29 114
MS.gene030289.t1 AT5G64970 29.773 309 173 6 20 306 16 302 9.86e-29 112
MS.gene030289.t1 AT3G20240 25.902 305 182 8 20 302 57 339 1.83e-27 110
MS.gene030289.t1 AT5G13490 29.766 299 186 7 15 299 84 372 3.17e-27 110
MS.gene030289.t1 AT5G13490 29.766 299 186 7 15 299 84 372 3.17e-27 110
MS.gene030289.t1 AT3G08580 29.766 299 186 7 15 299 80 368 4.37e-26 106
MS.gene030289.t1 AT3G08580 29.766 299 186 7 15 299 80 368 4.37e-26 106
MS.gene030289.t1 AT5G17400 27.737 274 170 6 31 290 30 289 5.82e-25 102
MS.gene030289.t1 AT1G78180 29.560 318 168 9 17 304 126 417 2.88e-24 102
MS.gene030289.t1 AT1G25380 26.990 289 185 8 27 303 33 307 4.48e-24 100
MS.gene030289.t1 AT1G25380 26.990 289 185 8 27 303 33 307 4.48e-24 100
MS.gene030289.t1 AT2G47490 26.621 293 187 7 27 306 29 306 2.62e-21 92.4
MS.gene030289.t1 AT2G47490 29.167 192 120 6 124 311 30 209 4.76e-12 65.9
MS.gene030289.t1 AT5G64970 28.571 294 162 7 17 284 133 404 4.52e-21 93.2
MS.gene030289.t1 AT5G66380 27.203 261 167 7 54 303 53 301 1.84e-18 84.3
MS.gene030289.t1 AT4G11440 25.850 294 182 7 20 302 335 603 7.54e-18 84.3
MS.gene030289.t1 AT4G11440 25.850 294 182 7 20 302 335 603 7.54e-18 84.3
MS.gene030289.t1 AT1G14140 23.448 290 199 7 20 299 21 297 1.22e-15 76.3
MS.gene030289.t1 AT2G33820 24.585 301 194 12 15 296 14 300 1.22e-14 73.6
MS.gene030289.t1 AT5G46800 25.430 291 202 7 22 302 14 299 2.17e-14 72.8
MS.gene030289.t1 AT5G46800 25.430 291 202 7 22 302 14 299 2.17e-14 72.8
MS.gene030289.t1 AT5G46800 25.430 291 202 7 22 302 14 299 2.17e-14 72.8
MS.gene030289.t1 AT2G39970 24.068 295 196 8 31 298 24 317 4.03e-13 69.3
MS.gene030289.t1 AT4G27940 23.358 274 183 7 46 302 144 407 6.30e-13 69.3
MS.gene030289.t1 AT1G79900 30.168 179 106 3 22 199 117 277 2.67e-12 66.6
MS.gene030289.t1 AT2G33820 23.948 309 194 13 15 296 14 308 3.06e-12 66.6
MS.gene030289.t1 AT2G30160 23.810 294 196 7 20 303 47 322 3.61e-12 66.6
MS.gene030289.t1 AT3G54110 21.725 313 220 7 1 303 1 298 4.56e-12 65.9
MS.gene030289.t1 AT3G54110 28.421 190 117 7 125 305 29 208 1.55e-11 64.3
MS.gene030289.t1 AT1G07030 22.337 291 201 4 20 303 45 317 5.29e-12 65.9
MS.gene030289.t1 AT1G74240 25.658 304 199 8 20 303 41 337 1.79e-11 64.7
MS.gene030289.t1 AT5G58970 21.927 301 207 7 15 303 16 300 1.94e-11 64.3
MS.gene030289.t1 AT1G34065 26.471 204 132 4 9 212 157 342 3.22e-11 63.9
MS.gene030289.t1 AT1G34065 26.471 204 132 4 9 212 150 335 3.46e-11 63.5
MS.gene030289.t1 AT2G46320 24.031 258 167 9 57 299 109 352 6.31e-11 63.2

Find 85 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCAAGTTGAATGTTTC+TGG 0.120655 6.2:+88925291 MS.gene030289:CDS
TGGATCCGTGGCCGGTTTAT+TGG 0.168335 6.2:+88925630 MS.gene030289:CDS
ACGTCTCAAAATTCTCTTTC+AGG 0.214100 6.2:+88923162 MS.gene030289:CDS
TGCCAAGACCGAAGGTCTTT+TGG 0.240864 6.2:+88924850 MS.gene030289:CDS
CTTATGGCAGGGTCACTCTT+TGG 0.304103 6.2:+88925088 MS.gene030289:CDS
TCGGACTAAGTTAGCTTATC+AGG 0.313146 6.2:+88925150 MS.gene030289:CDS
GGTATGAAACTCGGCTCTTC+TGG 0.314043 6.2:-88924798 None:intergenic
GCCACAGCTCCGACACTCTT+TGG 0.326066 6.2:+88925508 MS.gene030289:intron
GTGAAAATTTGCAGGGGAAA+TGG 0.334185 6.2:+88924950 MS.gene030289:intron
GAGAGGGATGTGATCGAGTA+TGG 0.340180 6.2:-88923083 None:intergenic
TAGTCCACTTCATCTCTTGA+TGG 0.341198 6.2:-88926051 None:intergenic
AGGTCCTACCCTTGACCTTA+TGG 0.344397 6.2:+88925072 MS.gene030289:CDS
GGATCCGTGGCCGGTTTATT+GGG 0.353057 6.2:+88925631 MS.gene030289:CDS
TGGCATTAGAGGTCTGTATA+GGG 0.353243 6.2:+88925380 MS.gene030289:CDS
TGATACTCAGCCCTGAAAAC+AGG 0.379917 6.2:-88925864 None:intergenic
CATATCCTCTTGAAGTTGTC+AGG 0.390609 6.2:+88925665 MS.gene030289:CDS
GTGGCATTAGAGGTCTGTAT+AGG 0.393730 6.2:+88925379 MS.gene030289:CDS
TATAAAGAGGGTGGCATTAG+AGG 0.393834 6.2:+88925369 MS.gene030289:CDS
TTTGCTAAAGAACTTCTTGC+CGG 0.399304 6.2:+88923106 MS.gene030289:CDS
TTTCATACCACTGGACTGTC+TGG 0.418812 6.2:+88924812 MS.gene030289:CDS
TCCCAAAAGACCTTCGGTCT+TGG 0.420715 6.2:-88924852 None:intergenic
CAATCTTCGGTATTCCTCAT+AGG 0.426870 6.2:-88925020 None:intergenic
GTTGTTCCATCTGCGGCCAT+TGG 0.439759 6.2:+88925988 MS.gene030289:CDS
TCTCATAGTCCCTTTCAATT+CGG 0.446254 6.2:-88925803 None:intergenic
TTTGAAATTCTACTTCTATG+AGG 0.450212 6.2:+88925549 MS.gene030289:CDS
TAGAATTTCAAACCCGCGTA+TGG 0.453141 6.2:-88925538 None:intergenic
ATGGCAGGGTCACTCTTTGG+AGG 0.454307 6.2:+88925091 MS.gene030289:CDS
GCTGAGTATCAATTACATAA+AGG 0.458191 6.2:+88925876 MS.gene030289:CDS
CCAGAAACATTCAACTTGGT+TGG 0.463580 6.2:-88925291 None:intergenic
CAACCAAGTTGAATGTTTCT+GGG 0.469495 6.2:+88925292 MS.gene030289:CDS
CTTATCCGCTGGACTTAACT+CGG 0.480259 6.2:+88925131 MS.gene030289:CDS
CATCCCAGAAACATTCAACT+TGG 0.482679 6.2:-88925295 None:intergenic
TCTTCACTTTATGTCCTATG+AGG 0.493276 6.2:+88925006 MS.gene030289:CDS
AAGCTTGCACAATCAATCTT+CGG 0.494767 6.2:-88925033 None:intergenic
CCTACCCTTGACCTTATGGC+AGG 0.496875 6.2:+88925076 MS.gene030289:CDS
TGATTGCTCAAAAGCAAGGC+TGG 0.499574 6.2:+88925836 MS.gene030289:CDS
GCAAGGATTATTCCTTATGC+AGG 0.499813 6.2:+88924983 MS.gene030289:CDS
CAAAGAGTGACCCTGCCATA+AGG 0.502575 6.2:-88925087 None:intergenic
CTGAAGAAGCCGAATTGAAA+GGG 0.520218 6.2:+88925794 MS.gene030289:CDS
ATAAAGTGAAGACCTGCATA+AGG 0.530348 6.2:-88924995 None:intergenic
AGTACCATCAAGAGATGAAG+TGG 0.531658 6.2:+88926047 MS.gene030289:CDS
GAATGTCTGACCCAATAAAC+CGG 0.532252 6.2:-88925641 None:intergenic
GTGAAGCCAATGGCCGCAGA+TGG 0.532601 6.2:-88925994 None:intergenic
CAAGTTGAATGTTTCTGGGA+TGG 0.532759 6.2:+88925296 MS.gene030289:CDS
CATCTCTTGATGGTACTCTC+AGG 0.533112 6.2:-88926041 None:intergenic
GTAGAATCCCAAAAGACCTT+CGG 0.538538 6.2:-88924858 None:intergenic
TCTGAAGAAGCCGAATTGAA+AGG 0.545458 6.2:+88925793 MS.gene030289:CDS
CGGCTTCTTCAGATGCCGCA+AGG 0.546244 6.2:-88925783 None:intergenic
AGAGGTCTGTATAGGGGAGT+AGG 0.546694 6.2:+88925387 MS.gene030289:CDS
CTGACATGTGGATCCGTGGC+CGG 0.555044 6.2:+88925622 MS.gene030289:CDS
AGAATTTCAAACCCGCGTAT+GGG 0.562448 6.2:-88925537 None:intergenic
AGTTGTCAGGAGGCAAATGC+AGG 0.565986 6.2:+88925678 MS.gene030289:CDS
AGAAGTTCTTTAGCAAAGAG+AGG 0.570632 6.2:-88923100 None:intergenic
AATTCAGGTTGTTCCATCTG+CGG 0.571625 6.2:+88925981 MS.gene030289:intron
GAAGTTCTTTAGCAAAGAGA+GGG 0.572732 6.2:-88923099 None:intergenic
CAGGGGAAATGGAGCAAGTG+TGG 0.576065 6.2:+88924961 MS.gene030289:intron
GAAAGGGACTATGAGATCCA+TGG 0.576797 6.2:+88925810 MS.gene030289:CDS
TGCCTCCTGACAACTTCAAG+AGG 0.577185 6.2:-88925670 None:intergenic
GTGACCCTGCCATAAGGTCA+AGG 0.580517 6.2:-88925081 None:intergenic
ATAATGAACAAGTTTATCGA+GGG 0.581693 6.2:+88925322 MS.gene030289:CDS
CTTTGGAATATTCCCATACG+CGG 0.582745 6.2:+88925525 MS.gene030289:CDS
CTACCCTTGACCTTATGGCA+GGG 0.587881 6.2:+88925077 MS.gene030289:CDS
GGCATTAGAGGTCTGTATAG+GGG 0.588807 6.2:+88925381 MS.gene030289:CDS
TGGCAGGGTCACTCTTTGGA+GGG 0.591113 6.2:+88925092 MS.gene030289:CDS
AGAGCCGAGTTTCATACCAC+TGG 0.591866 6.2:+88924803 MS.gene030289:CDS
CAGTCCAGTGGTATGAAACT+CGG 0.592316 6.2:-88924807 None:intergenic
AGCAGAATTGCCAAGACCGA+AGG 0.593796 6.2:+88924842 MS.gene030289:CDS
GCTAAAGAACTTCTTGCCGG+TGG 0.597460 6.2:+88923109 MS.gene030289:CDS
AATAATGAACAAGTTTATCG+AGG 0.610108 6.2:+88925321 MS.gene030289:CDS
GATACTCAGCCCTGAAAACA+GGG 0.610200 6.2:-88925863 None:intergenic
GGGAATATTCCAAAGAGTGT+CGG 0.616862 6.2:-88925517 None:intergenic
ATCATAAACTGTGAAGCCAA+TGG 0.621650 6.2:-88926004 None:intergenic
CTGACCCAATAAACCGGCCA+CGG 0.624628 6.2:-88925635 None:intergenic
GAAATGGAGCAAGTGTGGCA+AGG 0.627350 6.2:+88924966 MS.gene030289:CDS
TGACCCTGCCATAAGGTCAA+GGG 0.628759 6.2:-88925080 None:intergenic
GGATTACAAGAAAAGCATCA+TGG 0.645124 6.2:+88925594 MS.gene030289:CDS
TTTGGAATATTCCCATACGC+GGG 0.647148 6.2:+88925526 MS.gene030289:CDS
GAAACTGACATGTGGATCCG+TGG 0.653744 6.2:+88925618 MS.gene030289:CDS
ATCCTCTTGAAGTTGTCAGG+AGG 0.680873 6.2:+88925668 MS.gene030289:CDS
ATCATGGCGAAACTGACATG+TGG 0.686909 6.2:+88925610 MS.gene030289:CDS
TGACTAGGTTCAAAACCTTG+CGG 0.687829 6.2:+88925768 MS.gene030289:intron
CCTGCCATAAGGTCAAGGGT+AGG 0.694528 6.2:-88925076 None:intergenic
TTAGTCCGAGTTAAGTCCAG+CGG 0.697512 6.2:-88925136 None:intergenic
AACTGATCCAGACAGTCCAG+TGG 0.702856 6.2:-88924819 None:intergenic
AATGAAGCGACATGTACCTG+AGG 0.721078 6.2:+88925573 MS.gene030289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATGTATTGTAATAATTT+CGG + chr6.2:88924444-88924463 MS.gene030289:intron 15.0%
!!! TTTTCAAAAACTTATAAAGA+GGG + chr6.2:88925357-88925376 MS.gene030289:CDS 15.0%
!!! TTTTTCAAAAACTTATAAAG+AGG + chr6.2:88925356-88925375 MS.gene030289:CDS 15.0%
!! ACATGTATTGTAATAATTTC+GGG + chr6.2:88924445-88924464 MS.gene030289:intron 20.0%
!! TTGAATCATTGAAATTCAAA+GGG + chr6.2:88923394-88923413 MS.gene030289:intron 20.0%
!! TTTGAATTTCTTAAAGAAGA+CGG + chr6.2:88923433-88923452 MS.gene030289:intron 20.0%
!!! AAAAGTTTTGTTATACAGAA+CGG - chr6.2:88925943-88925962 None:intergenic 20.0%
!!! TTTTTTTGTTTTTGCAATTC+AGG + chr6.2:88925966-88925985 MS.gene030289:intron 20.0%
! AATAATGAACAAGTTTATCG+AGG + chr6.2:88925321-88925340 MS.gene030289:CDS 25.0%
! ACAAAATACAACCAAAATCA+TGG - chr6.2:88925215-88925234 None:intergenic 25.0%
! AGTATCAATTACATAAAGGT+GGG + chr6.2:88925880-88925899 MS.gene030289:intron 25.0%
! ATAATGAACAAGTTTATCGA+GGG + chr6.2:88925322-88925341 MS.gene030289:CDS 25.0%
! ATATCATTATTATCAGTGTC+CGG - chr6.2:88923233-88923252 None:intergenic 25.0%
! CTTGAATCATTGAAATTCAA+AGG + chr6.2:88923393-88923412 MS.gene030289:intron 25.0%
! GTAATCATATTTGTCAATGT+CGG + chr6.2:88924371-88924390 MS.gene030289:intron 25.0%
! TAACCTTATGTATGTAACTA+AGG - chr6.2:88923860-88923879 None:intergenic 25.0%
! TAATCATATTTGTCAATGTC+GGG + chr6.2:88924372-88924391 MS.gene030289:intron 25.0%
! TAGAACTCTTATGTTAATCA+TGG + chr6.2:88925486-88925505 MS.gene030289:intron 25.0%
!! TCAATTCTTATCCATGATTT+TGG + chr6.2:88925201-88925220 MS.gene030289:intron 25.0%
!! TTTGAAATTCTACTTCTATG+AGG + chr6.2:88925549-88925568 MS.gene030289:CDS 25.0%
!!! AAGTTTTTGAAAAACAGTCA+CGG - chr6.2:88925350-88925369 None:intergenic 25.0%
!!! AGGGAGGATTTTATTTATAA+AGG + chr6.2:88923805-88923824 MS.gene030289:intron 25.0%
!!! CATTGACACGTTTTTTTTTT+TGG - chr6.2:88923723-88923742 None:intergenic 25.0%
!!! CGTTTTTTTTTTTGGTTACA+AGG - chr6.2:88923715-88923734 None:intergenic 25.0%
AAGACGGTAACTATTTATGA+AGG + chr6.2:88923449-88923468 MS.gene030289:intron 30.0%
AAGACTAACTAATGTGATCT+TGG + chr6.2:88923582-88923601 MS.gene030289:intron 30.0%
AGACACTATCATTACTTTAC+TGG - chr6.2:88924621-88924640 None:intergenic 30.0%
ATCAGCTAGTTAGTTAGTTA+CGG + chr6.2:88924153-88924172 MS.gene030289:intron 30.0%
ATGAAAAACATGAAAACTGC+TGG - chr6.2:88924564-88924583 None:intergenic 30.0%
ATTATTACTAGTGTGAGTGT+CGG - chr6.2:88923916-88923935 None:intergenic 30.0%
ATTCATGACAGTATTACAGA+AGG + chr6.2:88923785-88923804 MS.gene030289:intron 30.0%
CATATATGATTTACGCGTAT+CGG - chr6.2:88924334-88924353 None:intergenic 30.0%
CATTTAAATCTGCTTGTGTT+TGG + chr6.2:88925414-88925433 MS.gene030289:intron 30.0%
CTACCTTAGTTACATACATA+AGG + chr6.2:88923854-88923873 MS.gene030289:intron 30.0%
GAGTATCAATTACATAAAGG+TGG + chr6.2:88925879-88925898 MS.gene030289:intron 30.0%
GATACAAATTTAACCTGACT+AGG + chr6.2:88925753-88925772 MS.gene030289:intron 30.0%
GCTGAGTATCAATTACATAA+AGG + chr6.2:88925876-88925895 MS.gene030289:CDS 30.0%
TAGTTACATTTGCAGACATT+AGG + chr6.2:88923533-88923552 MS.gene030289:intron 30.0%
TCAAAAACTTATAAAGAGGG+TGG + chr6.2:88925360-88925379 MS.gene030289:CDS 30.0%
TTCATGACAGTATTACAGAA+GGG + chr6.2:88923786-88923805 MS.gene030289:intron 30.0%
! ATAATTTCGGGTAAACATCT+AGG + chr6.2:88924457-88924476 MS.gene030289:intron 30.0%
!! GCTTTTTCTAATGTTTGGAA+AGG + chr6.2:88925052-88925071 MS.gene030289:CDS 30.0%
!! TGCAAGCTTTTTCTAATGTT+TGG + chr6.2:88925047-88925066 MS.gene030289:CDS 30.0%
!!! TTTTGTTATTGTGTCACTAG+TGG + chr6.2:88924684-88924703 MS.gene030289:intron 30.0%
AAACATCTAGGTAGTGTGTA+TGG + chr6.2:88924469-88924488 MS.gene030289:intron 35.0%
AAGCTTGCACAATCAATCTT+CGG - chr6.2:88925036-88925055 None:intergenic 35.0%
ACCAATGTGAAAATTTGCAG+GGG + chr6.2:88924944-88924963 MS.gene030289:intron 35.0%
ACGTCTCAAAATTCTCTTTC+AGG + chr6.2:88923162-88923181 MS.gene030289:CDS 35.0%
AGAAGTTCTTTAGCAAAGAG+AGG - chr6.2:88923103-88923122 None:intergenic 35.0%
AGCACACATACACTAAGAAT+GGG + chr6.2:88924230-88924249 MS.gene030289:intron 35.0%
AGTGAAGAACGATAGTTACA+AGG - chr6.2:88924533-88924552 None:intergenic 35.0%
ATAAAGTGAAGACCTGCATA+AGG - chr6.2:88924998-88925017 None:intergenic 35.0%
ATCATAAACTGTGAAGCCAA+TGG - chr6.2:88926007-88926026 None:intergenic 35.0%
CAAACACTAACACAACACAT+CGG + chr6.2:88923630-88923649 MS.gene030289:intron 35.0%
CACCAATGTGAAAATTTGCA+GGG + chr6.2:88924943-88924962 MS.gene030289:intron 35.0%
CACTATCATTACTTTACTGG+TGG - chr6.2:88924618-88924637 None:intergenic 35.0%
CTTCGACACTAGTATTATAG+AGG + chr6.2:88924057-88924076 MS.gene030289:intron 35.0%
GAAGTTCTTTAGCAAAGAGA+GGG - chr6.2:88923102-88923121 None:intergenic 35.0%
GACACTAGTATTATAGAGGA+GGG + chr6.2:88924061-88924080 MS.gene030289:intron 35.0%
GTGAAGAACGATAGTTACAA+GGG - chr6.2:88924532-88924551 None:intergenic 35.0%
TAGCACACATACACTAAGAA+TGG + chr6.2:88924229-88924248 MS.gene030289:intron 35.0%
TCACCAATGTGAAAATTTGC+AGG + chr6.2:88924942-88924961 MS.gene030289:intron 35.0%
TCTCATAGTCCCTTTCAATT+CGG - chr6.2:88925806-88925825 None:intergenic 35.0%
TCTTCACTTTATGTCCTATG+AGG + chr6.2:88925006-88925025 MS.gene030289:CDS 35.0%
TGTCGGTACTTGACATAAAA+AGG - chr6.2:88923204-88923223 None:intergenic 35.0%
TTTGCTAAAGAACTTCTTGC+CGG + chr6.2:88923106-88923125 MS.gene030289:CDS 35.0%
! ATGCTTTTCTTGTAATCCTC+AGG - chr6.2:88925592-88925611 None:intergenic 35.0%
! CAACCAAGTTGAATGTTTCT+GGG + chr6.2:88925292-88925311 MS.gene030289:CDS 35.0%
! CTTTTGAGCAATCAAAACCA+TGG - chr6.2:88925830-88925849 None:intergenic 35.0%
! TGTTCTTTTTACTTATCCGC+TGG + chr6.2:88925120-88925139 MS.gene030289:CDS 35.0%
!! CATCGGCACTGATAATAATT+TGG + chr6.2:88923647-88923666 MS.gene030289:intron 35.0%
!! GGATTACAAGAAAAGCATCA+TGG + chr6.2:88925594-88925613 MS.gene030289:CDS 35.0%
!!! AGAATTTTGAGACGTTCAAG+AGG - chr6.2:88923157-88923176 None:intergenic 35.0%
!!! GTTTTGATTGCTCAAAAGCA+AGG + chr6.2:88925832-88925851 MS.gene030289:CDS 35.0%
AAAAAAGAAGCTCCGTAGCA+CGG - chr6.2:88923290-88923309 None:intergenic 40.0%
AGAATTTCAAACCCGCGTAT+GGG - chr6.2:88925540-88925559 None:intergenic 40.0%
AGTACCATCAAGAGATGAAG+TGG + chr6.2:88926047-88926066 MS.gene030289:CDS 40.0%
ATGACAGTATTACAGAAGGG+AGG + chr6.2:88923789-88923808 MS.gene030289:intron 40.0%
CAATCTTCGGTATTCCTCAT+AGG - chr6.2:88925023-88925042 None:intergenic 40.0%
CATATCCTCTTGAAGTTGTC+AGG + chr6.2:88925665-88925684 MS.gene030289:CDS 40.0%
CATATTTGTCAATGTCGGGT+TGG + chr6.2:88924376-88924395 MS.gene030289:intron 40.0%
CATCCCAGAAACATTCAACT+TGG - chr6.2:88925298-88925317 None:intergenic 40.0%
CCAGAAACATTCAACTTGGT+TGG - chr6.2:88925294-88925313 None:intergenic 40.0%
CGACACTAGTATTATAGAGG+AGG + chr6.2:88924060-88924079 MS.gene030289:intron 40.0%
CTGAAGAAGCCGAATTGAAA+GGG + chr6.2:88925794-88925813 MS.gene030289:CDS 40.0%
GAATGTCTGACCCAATAAAC+CGG - chr6.2:88925644-88925663 None:intergenic 40.0%
GCAAGGATTATTCCTTATGC+AGG + chr6.2:88924983-88925002 MS.gene030289:CDS 40.0%
GTAGAATCCCAAAAGACCTT+CGG - chr6.2:88924861-88924880 None:intergenic 40.0%
GTGAAAATTTGCAGGGGAAA+TGG + chr6.2:88924950-88924969 MS.gene030289:intron 40.0%
GTTAGTTAGTTACGGACATG+AGG + chr6.2:88924161-88924180 MS.gene030289:intron 40.0%
TACAGGTAGATGGCAATCTT+AGG + chr6.2:88924878-88924897 MS.gene030289:intron 40.0%
TAGAATTTCAAACCCGCGTA+TGG - chr6.2:88925541-88925560 None:intergenic 40.0%
TAGTCCACTTCATCTCTTGA+TGG - chr6.2:88926054-88926073 None:intergenic 40.0%
TATAAAGAGGGTGGCATTAG+AGG + chr6.2:88925369-88925388 MS.gene030289:CDS 40.0%
TATAGACCCTACCTACCATA+GGG - chr6.2:88923561-88923580 None:intergenic 40.0%
TCTGAAGAAGCCGAATTGAA+AGG + chr6.2:88925793-88925812 MS.gene030289:CDS 40.0%
TGACTAGGTTCAAAACCTTG+CGG + chr6.2:88925768-88925787 MS.gene030289:intron 40.0%
TGGCATTAGAGGTCTGTATA+GGG + chr6.2:88925380-88925399 MS.gene030289:CDS 40.0%
TTAGTTACGGACATGAGGTA+AGG + chr6.2:88924166-88924185 MS.gene030289:intron 40.0%
! CCAACCAAGTTGAATGTTTC+TGG + chr6.2:88925291-88925310 MS.gene030289:CDS 40.0%
! GGGAATATTCCAAAGAGTGT+CGG - chr6.2:88925520-88925539 None:intergenic 40.0%
! TCCCCTGCAAATTTTCACAT+TGG - chr6.2:88924948-88924967 None:intergenic 40.0%
! TCGGACTAAGTTAGCTTATC+AGG + chr6.2:88925150-88925169 MS.gene030289:CDS 40.0%
! TGATAGTGTCTAAGATTGCC+CGG + chr6.2:88924630-88924649 MS.gene030289:intron 40.0%
! TGCAGGTAACGTGCTTTATT+TGG + chr6.2:88925695-88925714 MS.gene030289:intron 40.0%
! TTTGGAATATTCCCATACGC+GGG + chr6.2:88925526-88925545 MS.gene030289:CDS 40.0%
! TTTGGGATTCTACAGGTAGA+TGG + chr6.2:88924868-88924887 MS.gene030289:intron 40.0%
!! AACAGTTTTAGCAAAGCCAC+CGG - chr6.2:88923128-88923147 None:intergenic 40.0%
!! AATTCAGGTTGTTCCATCTG+CGG + chr6.2:88925981-88926000 MS.gene030289:intron 40.0%
!! CAAGTTGAATGTTTCTGGGA+TGG + chr6.2:88925296-88925315 MS.gene030289:CDS 40.0%
!! CTTTGGAATATTCCCATACG+CGG + chr6.2:88925525-88925544 MS.gene030289:CDS 40.0%
!! GGTAACGTGCTTTATTTGGT+CGG + chr6.2:88925699-88925718 MS.gene030289:intron 40.0%
!!! AAGGTCTTTTGGGATTCTAC+AGG + chr6.2:88924861-88924880 MS.gene030289:CDS 40.0%
!!! GGAGGGCAACGTTTTTTTAA+AGG + chr6.2:88924078-88924097 MS.gene030289:intron 40.0%
AACGATTATCTCCCTACACC+CGG - chr6.2:88924652-88924671 None:intergenic 45.0%
AAGAATGGGCACGACATTGA+TGG + chr6.2:88924244-88924263 MS.gene030289:intron 45.0%
AATGAAGCGACATGTACCTG+AGG + chr6.2:88925573-88925592 MS.gene030289:CDS 45.0%
ACCAAGCACAGACACATACA+CGG + chr6.2:88923887-88923906 MS.gene030289:intron 45.0%
ATCATGGCGAAACTGACATG+TGG + chr6.2:88925610-88925629 MS.gene030289:CDS 45.0%
ATCCTCTTGAAGTTGTCAGG+AGG + chr6.2:88925668-88925687 MS.gene030289:CDS 45.0%
CAGTCCAGTGGTATGAAACT+CGG - chr6.2:88924810-88924829 None:intergenic 45.0%
CTTATCCGCTGGACTTAACT+CGG + chr6.2:88925131-88925150 MS.gene030289:CDS 45.0%
GAAAGGGACTATGAGATCCA+TGG + chr6.2:88925810-88925829 MS.gene030289:CDS 45.0%
GACATTAGGTACCCTATGGT+AGG + chr6.2:88923547-88923566 MS.gene030289:intron 45.0%
GATACTCAGCCCTGAAAACA+GGG - chr6.2:88925866-88925885 None:intergenic 45.0%
GGCATTAGAGGTCTGTATAG+GGG + chr6.2:88925381-88925400 MS.gene030289:CDS 45.0%
GGTAGTGTGTATGGAAGTGA+CGG + chr6.2:88924478-88924497 MS.gene030289:intron 45.0%
GGTCGGCTGGAAATTATAGA+TGG + chr6.2:88925716-88925735 MS.gene030289:intron 45.0%
GTATAGACCCTACCTACCAT+AGG - chr6.2:88923562-88923581 None:intergenic 45.0%
GTGGCATTAGAGGTCTGTAT+AGG + chr6.2:88925379-88925398 MS.gene030289:CDS 45.0%
TAGGTACCCTATGGTAGGTA+GGG + chr6.2:88923552-88923571 MS.gene030289:intron 45.0%
TGATACTCAGCCCTGAAAAC+AGG - chr6.2:88925867-88925886 None:intergenic 45.0%
TGATTGCTCAAAAGCAAGGC+TGG + chr6.2:88925836-88925855 MS.gene030289:CDS 45.0%
TGCAGACATTAGGTACCCTA+TGG + chr6.2:88923543-88923562 MS.gene030289:intron 45.0%
TGTAGCACAGACACTTCTAG+CGG - chr6.2:88924010-88924029 None:intergenic 45.0%
TTAGGTACCCTATGGTAGGT+AGG + chr6.2:88923551-88923570 MS.gene030289:intron 45.0%
TTAGTCCGAGTTAAGTCCAG+CGG - chr6.2:88925139-88925158 None:intergenic 45.0%
TTTCATACCACTGGACTGTC+TGG + chr6.2:88924812-88924831 MS.gene030289:CDS 45.0%
! ATGTCTTCCATGGGAAGTGT+CGG + chr6.2:88924418-88924437 MS.gene030289:intron 45.0%
! CATCTCTTGATGGTACTCTC+AGG - chr6.2:88926044-88926063 None:intergenic 45.0%
! GATAGTGTCTAAGATTGCCC+GGG + chr6.2:88924631-88924650 MS.gene030289:intron 45.0%
!! AATGTCGGGTTGGTACATGT+CGG + chr6.2:88924386-88924405 MS.gene030289:intron 45.0%
!! TCAAGTACCGACACAAACAC+CGG + chr6.2:88923211-88923230 MS.gene030289:intron 45.0%
!!! GCAAGGTTTTGAACCTAGTC+AGG - chr6.2:88925769-88925788 None:intergenic 45.0%
AACTGATCCAGACAGTCCAG+TGG - chr6.2:88924822-88924841 None:intergenic 50.0%
AATCAGACGTGTCCGTGCTA+CGG + chr6.2:88923275-88923294 MS.gene030289:intron 50.0%
AATGGGCACGACATTGATGG+TGG + chr6.2:88924247-88924266 MS.gene030289:intron 50.0%
ACGATTATCTCCCTACACCC+GGG - chr6.2:88924651-88924670 None:intergenic 50.0%
ACTCCGGACATGTCTTCCAT+GGG + chr6.2:88924409-88924428 MS.gene030289:intron 50.0%
AGAGCCGAGTTTCATACCAC+TGG + chr6.2:88924803-88924822 MS.gene030289:CDS 50.0%
AGAGGTCTGTATAGGGGAGT+AGG + chr6.2:88925387-88925406 MS.gene030289:CDS 50.0%
AGCAGAATTGCCAAGACCGA+AGG + chr6.2:88924842-88924861 MS.gene030289:CDS 50.0%
AGGTCCTACCCTTGACCTTA+TGG + chr6.2:88925072-88925091 MS.gene030289:CDS 50.0%
AGTTGTCAGGAGGCAAATGC+AGG + chr6.2:88925678-88925697 MS.gene030289:CDS 50.0%
CAAAGAGTGACCCTGCCATA+AGG - chr6.2:88925090-88925109 None:intergenic 50.0%
CTACCCTTGACCTTATGGCA+GGG + chr6.2:88925077-88925096 MS.gene030289:CDS 50.0%
CTTATGGCAGGGTCACTCTT+TGG + chr6.2:88925088-88925107 MS.gene030289:CDS 50.0%
CTTCCCATGGAAGACATGTC+CGG - chr6.2:88924415-88924434 None:intergenic 50.0%
GAAACTGACATGTGGATCCG+TGG + chr6.2:88925618-88925637 MS.gene030289:CDS 50.0%
GAAATGGAGCAAGTGTGGCA+AGG + chr6.2:88924966-88924985 MS.gene030289:CDS 50.0%
GAGAGGGATGTGATCGAGTA+TGG - chr6.2:88923086-88923105 None:intergenic 50.0%
GCTAAAGAACTTCTTGCCGG+TGG + chr6.2:88923109-88923128 MS.gene030289:CDS 50.0%
GGGTGTAGGGAGATAATCGT+TGG + chr6.2:88924651-88924670 MS.gene030289:intron 50.0%
GGTATGAAACTCGGCTCTTC+TGG - chr6.2:88924801-88924820 None:intergenic 50.0%
TCAGTGTCCGGTGTTTGTGT+CGG - chr6.2:88923221-88923240 None:intergenic 50.0%
TCCCAAAAGACCTTCGGTCT+TGG - chr6.2:88924855-88924874 None:intergenic 50.0%
TCCGTGTATGTGTCTGTGCT+TGG - chr6.2:88923891-88923910 None:intergenic 50.0%
TGACCCTGCCATAAGGTCAA+GGG - chr6.2:88925083-88925102 None:intergenic 50.0%
TGCCTCCTGACAACTTCAAG+AGG - chr6.2:88925673-88925692 None:intergenic 50.0%
! GCCAAGACCGAAGGTCTTTT+GGG + chr6.2:88924851-88924870 MS.gene030289:CDS 50.0%
! GCTGGAAGACCCTGTTTTCA+GGG + chr6.2:88925854-88925873 MS.gene030289:CDS 50.0%
! TCTAAGATTGCCCGGGTGTA+GGG + chr6.2:88924638-88924657 MS.gene030289:intron 50.0%
! TGCCAAGACCGAAGGTCTTT+TGG + chr6.2:88924850-88924869 MS.gene030289:CDS 50.0%
!! ACGTGCTTTATTTGGTCGGC+TGG + chr6.2:88925703-88925722 MS.gene030289:intron 50.0%
ATGGCAGGGTCACTCTTTGG+AGG + chr6.2:88925091-88925110 MS.gene030289:CDS 55.0%
CAGGGGAAATGGAGCAAGTG+TGG + chr6.2:88924961-88924980 MS.gene030289:intron 55.0%
CCTACCCTTGACCTTATGGC+AGG + chr6.2:88925076-88925095 MS.gene030289:CDS 55.0%
CCTGCCATAAGGTCAAGGGT+AGG - chr6.2:88925079-88925098 None:intergenic 55.0%
CTGACCCAATAAACCGGCCA+CGG - chr6.2:88925638-88925657 None:intergenic 55.0%
GACTCCGGACATGTCTTCCA+TGG + chr6.2:88924408-88924427 MS.gene030289:intron 55.0%
GTGACCCTGCCATAAGGTCA+AGG - chr6.2:88925084-88925103 None:intergenic 55.0%
GTTGTTCCATCTGCGGCCAT+TGG + chr6.2:88925988-88926007 MS.gene030289:CDS 55.0%
TGGCAGGGTCACTCTTTGGA+GGG + chr6.2:88925092-88925111 MS.gene030289:CDS 55.0%
! GGATCCGTGGCCGGTTTATT+GGG + chr6.2:88925631-88925650 MS.gene030289:CDS 55.0%
! GGCTGGAAGACCCTGTTTTC+AGG + chr6.2:88925853-88925872 MS.gene030289:CDS 55.0%
! GGTTGGTACATGTCGGACTC+CGG + chr6.2:88924393-88924412 MS.gene030289:intron 55.0%
! GTCTAAGATTGCCCGGGTGT+AGG + chr6.2:88924637-88924656 MS.gene030289:intron 55.0%
! TGGATCCGTGGCCGGTTTAT+TGG + chr6.2:88925630-88925649 MS.gene030289:CDS 55.0%
!! TCCAAAGAGTGTCGGAGCTG+TGG - chr6.2:88925512-88925531 None:intergenic 55.0%
!! TGTAGCACCGACACTTCCCA+TGG - chr6.2:88924428-88924447 None:intergenic 55.0%
CGGCTTCTTCAGATGCCGCA+AGG - chr6.2:88925786-88925805 None:intergenic 60.0%
CTGACATGTGGATCCGTGGC+CGG + chr6.2:88925622-88925641 MS.gene030289:CDS 60.0%
GCCACAGCTCCGACACTCTT+TGG + chr6.2:88925508-88925527 MS.gene030289:intron 60.0%
GTGAAGCCAATGGCCGCAGA+TGG - chr6.2:88925997-88926016 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 88923064 88926074 88923064 ID=MS.gene030289
chr6.2 mRNA 88923064 88926074 88923064 ID=MS.gene030289.t1;Parent=MS.gene030289
chr6.2 exon 88923064 88923183 88923064 ID=MS.gene030289.t1.exon1;Parent=MS.gene030289.t1
chr6.2 CDS 88923064 88923183 88923064 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88924797 88924882 88924797 ID=MS.gene030289.t1.exon2;Parent=MS.gene030289.t1
chr6.2 CDS 88924797 88924882 88924797 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88924964 88925171 88924964 ID=MS.gene030289.t1.exon3;Parent=MS.gene030289.t1
chr6.2 CDS 88924964 88925171 88924964 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88925282 88925408 88925282 ID=MS.gene030289.t1.exon4;Parent=MS.gene030289.t1
chr6.2 CDS 88925282 88925408 88925282 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88925515 88925699 88925515 ID=MS.gene030289.t1.exon5;Parent=MS.gene030289.t1
chr6.2 CDS 88925515 88925699 88925515 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88925775 88925897 88925775 ID=MS.gene030289.t1.exon6;Parent=MS.gene030289.t1
chr6.2 CDS 88925775 88925897 88925775 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
chr6.2 exon 88925988 88926074 88925988 ID=MS.gene030289.t1.exon7;Parent=MS.gene030289.t1
chr6.2 CDS 88925988 88926074 88925988 ID=cds.MS.gene030289.t1;Parent=MS.gene030289.t1
Gene Sequence

>MS.gene030289

ATGGCAGCATCATCAGAATCCATACTCGATCACATCCCTCTCTTTGCTAAAGAACTTCTTGCCGGTGGCTTTGCTAAAACTGTTGTTGCTCCTCTTGAACGTCTCAAAATTCTCTTTCAGGTACTTTCTTTAATTCTCCTTTTTATGTCAAGTACCGACACAAACACCGGACACTGATAATAATGATATGAAAAAAATGACATAATTCTTTAATCAGACGTGTCCGTGCTACGGAGCTTCTTTTTTCTTTTTTTTATGTTTCTTCTTTGCTTTTTATTTTCGAAATGCATTTGTATGCTTTGATTTCATGCGTGATCTGTTTTTTGAATCTTGAATCATTGAAATTCAAAGGGAAATCTTATTTAGTCTTTTGAATTTCTTAAAGAAGACGGTAACTATTTATGAAGGTAGTTGAAATACAGTTTAACTGCTTGAATTAACTCTAACTAACTCATGTCAATCAGTTAGTTAGTTACATTTGCAGACATTAGGTACCCTATGGTAGGTAGGGTCTATACAAGACTAACTAATGTGATCTTGGATACTATGAAGTGCAAGTGCAAATGCAAACACTAACACAACACATCGGCACTGATAATAATTTGGAAAAATGAATTAATTAAATGTAATCACATGTGTCAATGTTTGCCTTGTAACCAAAAAAAAAAACGTGTCAATGTTTGACACTGACACATGATTAATAAAAATCTTCGTATTTTGCATTCATGACAGTATTACAGAAGGGAGGATTTTATTTATAAAGGTAGCTGATGTAGTTTAACTGCTTAAACTACCTTAGTTACATACATAAGGTTATACTTATACCAAGCACAGACACATACACGGATGCCGACACTCACACTAGTAATAATTTGAGAAAATTAATTGAATGTAGTTACTTGTGTCGATGACAGTGACACATGTCGAACACAGAACACATCTTCCGCTAGAAGTGTCTGTGCTACATGTAATGTAATAATCACGAGTCTTTTTCTTCGACACTAGTATTATAGAGGAGGGCAACGTTTTTTTAAAGGCAGCTGATGCACTTTAAGTACTGAAACTAACTCTAATAATTAACTCACTTGAATCAGCTAGTTAGTTAGTTACGGACATGAGGTAAGGTCTATATACAAGACTAGCTACTGTGATGTTGAATACTATGTAGCACACATACACTAAGAATGGGCACGACATTGATGGTGGCACGTCGACAACAATAATAATTTGAGAAAATGAGTTTAATCACATTTGTCAATGTCTGACACCGATACGCGTAAATCATATATGAAGACAATAAATTAATTGTAATCATATTTGTCAATGTCGGGTTGGTACATGTCGGACTCCGGACATGTCTTCCATGGGAAGTGTCGGTGCTACATGTATTGTAATAATTTCGGGTAAACATCTAGGTAGTGTGTATGGAAGTGACGGTGCTACATGTAATGTAATCATATTCTTTCCCTTGTAACTATCGTTCTTCACTTGTCACTTCCAGCAGTTTTCATGTTTTTCATTTTTTCTTGTTCTTATTTTTCTGATATGCATCCACCAGTAAAGTAATGATAGTGTCTAAGATTGCCCGGGTGTAGGGAGATAATCGTTGGAAACATGAAATTTTGTTATTGTGTCACTAGTGGATGACTTTTGTTAAACTAGATTAGATGATCATAGATTGATAAATCACTATCATTATTTGCAGATTGATAAATCACTATCATTATTTGCAGACCAGAAGAGCCGAGTTTCATACCACTGGACTGTCTGGATCAGTTAGCAGAATTGCCAAGACCGAAGGTCTTTTGGGATTCTACAGGTAGATGGCAATCTTAGGTGCTTTATCTTCTATCAATTAAATTAAATAATTAATCTGAATCACCAATGTGAAAATTTGCAGGGGAAATGGAGCAAGTGTGGCAAGGATTATTCCTTATGCAGGTCTTCACTTTATGTCCTATGAGGAATACCGAAGATTGATTGTGCAAGCTTTTTCTAATGTTTGGAAAGGTCCTACCCTTGACCTTATGGCAGGGTCACTCTTTGGAGGGACAGCTGTTCTTTTTACTTATCCGCTGGACTTAACTCGGACTAAGTTAGCTTATCAGGTAAAGTAAATTTTTCATCAGAAATCAAATCAATTCTTATCCATGATTTTGGTTGTATTTTGTGATTACATGAAGTGTTAACTACACTGCATGTGAAATTGAAACTGCAGATTGTTAGTCCAACCAAGTTGAATGTTTCTGGGATGGTAAATAATGAACAAGTTTATCGAGGGATCCGTGACTGTTTTTCAAAAACTTATAAAGAGGGTGGCATTAGAGGTCTGTATAGGGGAGTAGGTATGCATTTAAATCTGCTTGTGTTTGGAACTGTTAATTCAGCAGCAGTATTGTATTTCACTGCTGTGTTGTTATTGTAGAACTCTTATGTTAATCATGGCCACAGCTCCGACACTCTTTGGAATATTCCCATACGCGGGTTTGAAATTCTACTTCTATGAGGAAATGAAGCGACATGTACCTGAGGATTACAAGAAAAGCATCATGGCGAAACTGACATGTGGATCCGTGGCCGGTTTATTGGGTCAGACATTCACATATCCTCTTGAAGTTGTCAGGAGGCAAATGCAGGTAACGTGCTTTATTTGGTCGGCTGGAAATTATAGATGGATATTGAGTAACATGATACAAATTTAACCTGACTAGGTTCAAAACCTTGCGGCATCTGAAGAAGCCGAATTGAAAGGGACTATGAGATCCATGGTTTTGATTGCTCAAAAGCAAGGCTGGAAGACCCTGTTTTCAGGGCTGAGTATCAATTACATAAAGGTGGGAAAATCATAGAACATTAAAGTAATTCACACTCTAGAACCGTTCTGTATAACAAAACTTTTTGTTTTTTTTGTTTTTGCAATTCAGGTTGTTCCATCTGCGGCCATTGGCTTCACAGTTTATGATACTATGAAATCATACCTGAGAGTACCATCAAGAGATGAAGTGGACTAA
Protein sequence

>MS.gene030289.t1

MAASSESILDHIPLFAKELLAGGFAKTVVAPLERLKILFQTRRAEFHTTGLSGSVSRIAKTEGLLGFYRGNGASVARIIPYAGLHFMSYEEYRRLIVQAFSNVWKGPTLDLMAGSLFGGTAVLFTYPLDLTRTKLAYQIVSPTKLNVSGMVNNEQVYRGIRDCFSKTYKEGGIRGLYRGVAPTLFGIFPYAGLKFYFYEEMKRHVPEDYKKSIMAKLTCGSVAGLLGQTFTYPLEVVRRQMQVQNLAASEEAELKGTMRSMVLIAQKQGWKTLFSGLSINYIKVVPSAAIGFTVYDTMKSYLRVPSRDEVD