Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32944.t1 | RHN78238.1 | 96.3 | 348 | 13 | 0 | 1 | 348 | 103 | 450 | 5.70E-204 | 719.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32944.t1 | Q9CA34 | 64.2 | 352 | 119 | 3 | 1 | 350 | 99 | 445 | 4.7e-138 | 492.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32944.t1 | A0A396JPN5 | 96.3 | 348 | 13 | 0 | 1 | 348 | 103 | 450 | 4.1e-204 | 719.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052129 | MS.gene32944 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene053218 | MS.gene32944 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene32944 | -0.806361 | 8.54E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene32944 | -0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene32944 | -0.808695 | 2.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32944 | MS.gene036481 | PPI |
| MS.gene79900 | MS.gene32944 | PPI |
| MS.gene035337 | MS.gene32944 | PPI |
| MS.gene32944 | MS.gene041562 | PPI |
| MS.gene32944 | MS.gene75663 | PPI |
| MS.gene58506 | MS.gene32944 | PPI |
| MS.gene32944 | MS.gene77538 | PPI |
| MS.gene32944 | MS.gene045350 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32944.t1 | MTR_1g035730 | 95.690 | 348 | 15 | 0 | 1 | 348 | 103 | 450 | 0.0 | 707 |
| MS.gene32944.t1 | MTR_1g069460 | 46.197 | 355 | 182 | 3 | 1 | 348 | 185 | 537 | 7.01e-107 | 326 |
| MS.gene32944.t1 | MTR_7g098650 | 45.352 | 355 | 185 | 3 | 1 | 348 | 110 | 462 | 2.81e-105 | 320 |
| MS.gene32944.t1 | MTR_5g055350 | 43.094 | 362 | 186 | 5 | 1 | 348 | 83 | 438 | 2.15e-96 | 294 |
| MS.gene32944.t1 | MTR_3g084400 | 42.162 | 370 | 199 | 4 | 1 | 358 | 98 | 464 | 1.18e-95 | 293 |
| MS.gene32944.t1 | MTR_4g129930 | 42.618 | 359 | 192 | 4 | 1 | 348 | 102 | 457 | 2.10e-95 | 292 |
| MS.gene32944.t1 | MTR_5g095940 | 42.222 | 360 | 195 | 3 | 1 | 348 | 125 | 483 | 2.16e-90 | 280 |
| MS.gene32944.t1 | MTR_5g010370 | 40.113 | 354 | 200 | 9 | 1 | 348 | 191 | 538 | 2.94e-86 | 271 |
| MS.gene32944.t1 | MTR_3g007840 | 40.000 | 360 | 180 | 4 | 1 | 348 | 53 | 388 | 1.24e-83 | 260 |
| MS.gene32944.t1 | MTR_1g102430 | 40.997 | 361 | 192 | 10 | 2 | 348 | 132 | 485 | 1.05e-82 | 260 |
| MS.gene32944.t1 | MTR_5g010350 | 39.266 | 354 | 203 | 9 | 1 | 348 | 167 | 514 | 1.10e-81 | 258 |
| MS.gene32944.t1 | MTR_4g119810 | 35.310 | 371 | 212 | 11 | 1 | 347 | 73 | 439 | 2.98e-64 | 211 |
| MS.gene32944.t1 | MTR_5g095950 | 34.444 | 360 | 192 | 4 | 1 | 348 | 98 | 425 | 1.65e-63 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32944.t1 | AT1G68470 | 64.205 | 352 | 119 | 3 | 1 | 350 | 99 | 445 | 2.63e-173 | 490 |
| MS.gene32944.t1 | AT2G20370 | 45.352 | 355 | 185 | 3 | 1 | 348 | 182 | 534 | 6.39e-103 | 316 |
| MS.gene32944.t1 | AT2G29040 | 45.787 | 356 | 183 | 6 | 1 | 348 | 330 | 683 | 3.54e-102 | 317 |
| MS.gene32944.t1 | AT4G13990 | 43.697 | 357 | 188 | 6 | 1 | 348 | 128 | 480 | 9.25e-97 | 297 |
| MS.gene32944.t1 | AT4G13990 | 43.697 | 357 | 188 | 6 | 1 | 348 | 128 | 480 | 9.25e-97 | 297 |
| MS.gene32944.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 106 | 464 | 6.87e-91 | 281 |
| MS.gene32944.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 114 | 472 | 8.40e-91 | 281 |
| MS.gene32944.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 152 | 510 | 2.60e-90 | 281 |
| MS.gene32944.t1 | AT5G62220 | 42.276 | 369 | 190 | 12 | 2 | 355 | 150 | 510 | 6.08e-90 | 280 |
| MS.gene32944.t1 | AT2G32750 | 40.000 | 360 | 195 | 8 | 1 | 345 | 114 | 467 | 9.67e-87 | 271 |
| MS.gene32944.t1 | AT2G32750 | 40.000 | 360 | 195 | 8 | 1 | 345 | 116 | 469 | 1.04e-86 | 271 |
| MS.gene32944.t1 | AT2G32740 | 38.798 | 366 | 198 | 9 | 2 | 348 | 98 | 456 | 1.45e-85 | 266 |
| MS.gene32944.t1 | AT5G41250 | 38.418 | 354 | 203 | 8 | 1 | 348 | 208 | 552 | 1.93e-82 | 261 |
| MS.gene32944.t1 | AT1G63450 | 39.093 | 353 | 204 | 9 | 1 | 348 | 310 | 656 | 1.61e-79 | 256 |
| MS.gene32944.t1 | AT4G22580 | 36.043 | 369 | 206 | 13 | 1 | 348 | 68 | 427 | 3.45e-65 | 213 |
| MS.gene32944.t1 | AT1G67410 | 26.515 | 264 | 134 | 10 | 25 | 264 | 103 | 330 | 2.41e-12 | 68.2 |
Find 84 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGTGGGTCCGATTT+TGG | 0.211507 | 1.4:-20153102 | MS.gene32944:CDS |
| GGAGGTGTTAATGGGAATTA+AGG | 0.251312 | 1.4:-20152536 | MS.gene32944:CDS |
| TAGAATAGAATTGCTTGATT+TGG | 0.259412 | 1.4:+20153303 | None:intergenic |
| TTGCACTTCAAGGAATTTCT+AGG | 0.273213 | 1.4:-20152408 | MS.gene32944:CDS |
| TATGATTGAGGAGGTGTTAA+TGG | 0.285044 | 1.4:-20152545 | MS.gene32944:CDS |
| ATGGAAGTGATGTTGGGTTT+AGG | 0.291151 | 1.4:-20152444 | MS.gene32944:CDS |
| TGGAAGTGATGTTGGGTTTA+GGG | 0.307951 | 1.4:-20152443 | MS.gene32944:CDS |
| TTGTGATTGGTTTGATCCCT+AGG | 0.352787 | 1.4:-20152486 | MS.gene32944:CDS |
| AAATCATTTCTGCTAAGAAT+TGG | 0.356315 | 1.4:+20153367 | None:intergenic |
| GGAAGTGCTTAGTGTTATAA+TGG | 0.363737 | 1.4:-20152761 | MS.gene32944:CDS |
| AAGCCATTGTTCTTCACATA+AGG | 0.363823 | 1.4:+20153429 | None:intergenic |
| TTTATTGGTGGGAAAAGAAA+AGG | 0.364765 | 1.4:-20152892 | MS.gene32944:CDS |
| TAAGGAGAAAGATACTTATT+CGG | 0.369735 | 1.4:-20152605 | MS.gene32944:CDS |
| TAATATGTTGGCTCCAAAAT+CGG | 0.397853 | 1.4:+20153089 | None:intergenic |
| CTTTGCAAGTTGGTTGATTG+TGG | 0.403002 | 1.4:-20152814 | MS.gene32944:CDS |
| ACCCAACATCACTTCCATTC+GGG | 0.422139 | 1.4:+20152449 | None:intergenic |
| TTTGCAAGTTGGTTGATTGT+GGG | 0.424528 | 1.4:-20152813 | MS.gene32944:CDS |
| TAAGCACTTCCATTGGTTGA+TGG | 0.433760 | 1.4:+20152773 | None:intergenic |
| AACCCAACATCACTTCCATT+CGG | 0.447585 | 1.4:+20152448 | None:intergenic |
| AACAGTTGAACGACAACCTT+GGG | 0.449885 | 1.4:-20153031 | MS.gene32944:CDS |
| GAATAAGTATCTTTCTCCTT+AGG | 0.450856 | 1.4:+20152607 | None:intergenic |
| GGTGGGAAAAGAAAAGGGTT+AGG | 0.452157 | 1.4:-20152886 | MS.gene32944:CDS |
| GCTGTTGATGTTGCACTTCA+AGG | 0.452646 | 1.4:-20152418 | MS.gene32944:CDS |
| ATGATTGAGGAGGTGTTAAT+GGG | 0.454804 | 1.4:-20152544 | MS.gene32944:CDS |
| ACCCGAATGGAAGTGATGTT+GGG | 0.466760 | 1.4:-20152450 | MS.gene32944:CDS |
| AAAGAAGAGTAATATGATTG+AGG | 0.481487 | 1.4:-20152557 | MS.gene32944:CDS |
| AGCCATTGTTCTTCACATAA+GGG | 0.484383 | 1.4:+20153430 | None:intergenic |
| AAAATGCGTGAGGTTGTGAT+TGG | 0.487547 | 1.4:-20152499 | MS.gene32944:CDS |
| TTATTGGTGGGAAAAGAAAA+GGG | 0.491095 | 1.4:-20152891 | MS.gene32944:CDS |
| GGATGAAAATACGACGGGTA+AGG | 0.495809 | 1.4:+20152985 | None:intergenic |
| TGCAAGTTGGTTGATTGTGG+GGG | 0.509533 | 1.4:-20152811 | MS.gene32944:CDS |
| TGTGATTGGTTTGATCCCTA+GGG | 0.510208 | 1.4:-20152485 | MS.gene32944:CDS |
| CACCCGAATGGAAGTGATGT+TGG | 0.518128 | 1.4:-20152451 | MS.gene32944:CDS |
| CTATTCTACATACCATTCTA+CGG | 0.525739 | 1.4:-20153288 | MS.gene32944:CDS |
| GATTTCATGCGGTCCTCAAG+TGG | 0.526085 | 1.4:-20153114 | MS.gene32944:CDS |
| TGAGTCATCTCTTTGCAAGT+TGG | 0.526643 | 1.4:-20152824 | MS.gene32944:CDS |
| ATCGATTAGATCAACGGCTA+GGG | 0.530004 | 1.4:+20153212 | None:intergenic |
| TATTCGGTTTATATTGAAGA+GGG | 0.531841 | 1.4:-20152589 | MS.gene32944:CDS |
| GTTAGTTATGCGCACCCGAA+TGG | 0.531970 | 1.4:-20152463 | MS.gene32944:CDS |
| TCCAAAATCGGACCCACTTG+AGG | 0.536553 | 1.4:+20153101 | None:intergenic |
| TATGTGAAGAACAATGGCTT+AGG | 0.537393 | 1.4:-20153426 | MS.gene32944:CDS |
| GCGTGTAGTCCACCGTAGAA+TGG | 0.538340 | 1.4:+20153276 | None:intergenic |
| ATAACACTAAGCACTTCCAT+TGG | 0.539587 | 1.4:+20152766 | None:intergenic |
| ATACCATTGGTATTTGCCTA+AGG | 0.541550 | 1.4:-20152623 | MS.gene32944:CDS |
| TTCGGTTTATATTGAAGAGG+GGG | 0.546993 | 1.4:-20152587 | MS.gene32944:CDS |
| ATGTACAAAGTCTACCTTGG+TGG | 0.552088 | 1.4:-20153188 | MS.gene32944:CDS |
| TTTCTCTGGGAAGGACCGCA+TGG | 0.552309 | 1.4:-20153137 | MS.gene32944:CDS |
| TACATGATCGATTAGATCAA+CGG | 0.552809 | 1.4:+20153206 | None:intergenic |
| AAAATCACGTGTGTCGCACG+TGG | 0.553844 | 1.4:-20153329 | MS.gene32944:CDS |
| TCTCCTTAGGCAAATACCAA+TGG | 0.555859 | 1.4:+20152620 | None:intergenic |
| GTGGGAAAAGAAAAGGGTTA+GGG | 0.560862 | 1.4:-20152885 | MS.gene32944:CDS |
| TGGGAAGGTTATAATCAAAA+CGG | 0.566648 | 1.4:-20153012 | MS.gene32944:CDS |
| TTGCAAGTTGGTTGATTGTG+GGG | 0.567948 | 1.4:-20152812 | MS.gene32944:CDS |
| TTCTCTGGGAAGGACCGCAT+GGG | 0.570266 | 1.4:-20153136 | MS.gene32944:CDS |
| TAACAGTTGAACGACAACCT+TGG | 0.570721 | 1.4:-20153032 | MS.gene32944:CDS |
| GTTAATGGGAATTAAGGAGG+TGG | 0.571636 | 1.4:-20152530 | MS.gene32944:CDS |
| ATAAAATGAGACAAAACGAC+AGG | 0.573735 | 1.4:-20152930 | MS.gene32944:CDS |
| GATCGATTAGATCAACGGCT+AGG | 0.575788 | 1.4:+20153211 | None:intergenic |
| TGGTAGGTTTAATAATATGT+TGG | 0.579142 | 1.4:+20153077 | None:intergenic |
| CAGCGTATACGCAATACCAT+TGG | 0.583630 | 1.4:-20152636 | MS.gene32944:CDS |
| GAAGAGTAATATGATTGAGG+AGG | 0.587479 | 1.4:-20152554 | MS.gene32944:CDS |
| GGGTGCGCATAACTAACCCT+AGG | 0.588239 | 1.4:+20152469 | None:intergenic |
| TAGTAAATGCCATCAACCAA+TGG | 0.589401 | 1.4:-20152782 | MS.gene32944:CDS |
| CAAAAGAAGAAATGCTGACG+TGG | 0.592552 | 1.4:-20152957 | MS.gene32944:CDS |
| TCGGTTTATATTGAAGAGGG+GGG | 0.595261 | 1.4:-20152586 | MS.gene32944:CDS |
| ATTTCATGCGGTCCTCAAGT+GGG | 0.605471 | 1.4:-20153113 | MS.gene32944:CDS |
| ATCATGTACAAAGTCTACCT+TGG | 0.607581 | 1.4:-20153191 | MS.gene32944:CDS |
| CTTCTAGTAAAAGAATCACC+TGG | 0.626474 | 1.4:+20152715 | None:intergenic |
| GGTGCGCATAACTAACCCTA+GGG | 0.632069 | 1.4:+20152470 | None:intergenic |
| ATTCGGTTTATATTGAAGAG+GGG | 0.633941 | 1.4:-20152588 | MS.gene32944:CDS |
| TTATTCGGTTTATATTGAAG+AGG | 0.635875 | 1.4:-20152590 | MS.gene32944:CDS |
| GTTGAACGACAACCTTGGGA+AGG | 0.641260 | 1.4:-20153027 | MS.gene32944:CDS |
| CCTTGGTGGAATCGTCACAA+TGG | 0.642551 | 1.4:-20153174 | MS.gene32944:CDS |
| GGTGTTAATGGGAATTAAGG+AGG | 0.648081 | 1.4:-20152533 | MS.gene32944:CDS |
| GGAGAGTGTGATTCGCCTCG+CGG | 0.649710 | 1.4:+20153241 | None:intergenic |
| TATTGCGTATACGCTGTATG+TGG | 0.654666 | 1.4:+20152643 | None:intergenic |
| CGCTTCAAGCATGTTCCGCG+AGG | 0.663884 | 1.4:-20153256 | MS.gene32944:CDS |
| AAATCACGTGTGTCGCACGT+GGG | 0.664225 | 1.4:-20153328 | MS.gene32944:CDS |
| GGACCGCATGGGATTTCATG+CGG | 0.671183 | 1.4:-20153125 | MS.gene32944:CDS |
| TGCCCTTATGTGAAGAACAA+TGG | 0.674537 | 1.4:-20153432 | MS.gene32944:CDS |
| TTCTACATACCATTCTACGG+TGG | 0.700629 | 1.4:-20153285 | MS.gene32944:CDS |
| CCATTGTGACGATTCCACCA+AGG | 0.717299 | 1.4:+20153174 | None:intergenic |
| GATCAACGGCTAGGGCATCG+CGG | 0.732029 | 1.4:+20153220 | None:intergenic |
| GGACCGCATGAAATCCCATG+CGG | 0.771513 | 1.4:+20153122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAATAAATGAAAACAAAAA+CGG | + | chr1.4:20152909-20152928 | None:intergenic | 20.0% |
| !!! | AAAGATCATTTTATTTCTCT+GGG | - | chr1.4:20152663-20152682 | MS.gene32944:CDS | 20.0% |
| !!! | TAAAGATCATTTTATTTCTC+TGG | - | chr1.4:20152662-20152681 | MS.gene32944:CDS | 20.0% |
| !!! | TTTTGTTTTCATTTATTGGT+GGG | - | chr1.4:20152910-20152929 | MS.gene32944:CDS | 20.0% |
| !!! | TTTTTGTTTTCATTTATTGG+TGG | - | chr1.4:20152909-20152928 | MS.gene32944:CDS | 20.0% |
| ! | AAAGAAGAGTAATATGATTG+AGG | - | chr1.4:20153256-20153275 | MS.gene32944:CDS | 25.0% |
| ! | AAATCATTTCTGCTAAGAAT+TGG | + | chr1.4:20152449-20152468 | None:intergenic | 25.0% |
| ! | TAAGGAGAAAGATACTTATT+CGG | - | chr1.4:20153208-20153227 | MS.gene32944:CDS | 25.0% |
| ! | TAGAATAGAATTGCTTGATT+TGG | + | chr1.4:20152513-20152532 | None:intergenic | 25.0% |
| ! | TATTCGGTTTATATTGAAGA+GGG | - | chr1.4:20153224-20153243 | MS.gene32944:CDS | 25.0% |
| ! | TGGTAGGTTTAATAATATGT+TGG | + | chr1.4:20152739-20152758 | None:intergenic | 25.0% |
| ! | TTATTCGGTTTATATTGAAG+AGG | - | chr1.4:20153223-20153242 | MS.gene32944:CDS | 25.0% |
| !!! | AGCATTTCTTCTTTTGTTTT+TGG | + | chr1.4:20152852-20152871 | None:intergenic | 25.0% |
| !!! | CCGTTTTTGTTTTCATTTAT+TGG | - | chr1.4:20152906-20152925 | MS.gene32944:CDS | 25.0% |
| ATAAAATGAGACAAAACGAC+AGG | - | chr1.4:20152883-20152902 | MS.gene32944:CDS | 30.0% | |
| ATTCGGTTTATATTGAAGAG+GGG | - | chr1.4:20153225-20153244 | MS.gene32944:CDS | 30.0% | |
| CTATTCTACATACCATTCTA+CGG | - | chr1.4:20152525-20152544 | MS.gene32944:CDS | 30.0% | |
| GAATAAGTATCTTTCTCCTT+AGG | + | chr1.4:20153209-20153228 | None:intergenic | 30.0% | |
| TACATGATCGATTAGATCAA+CGG | + | chr1.4:20152610-20152629 | None:intergenic | 30.0% | |
| TGGGAAGGTTATAATCAAAA+CGG | - | chr1.4:20152801-20152820 | MS.gene32944:CDS | 30.0% | |
| TTATTGGTGGGAAAAGAAAA+GGG | - | chr1.4:20152922-20152941 | MS.gene32944:CDS | 30.0% | |
| TTTATTGGTGGGAAAAGAAA+AGG | - | chr1.4:20152921-20152940 | MS.gene32944:CDS | 30.0% | |
| ! | TTTTTGGATGAAAATACGAC+GGG | + | chr1.4:20152836-20152855 | None:intergenic | 30.0% |
| !! | ATCATTTTATTTCTCTGGGA+AGG | - | chr1.4:20152667-20152686 | MS.gene32944:CDS | 30.0% |
| !! | GTTTTTGGATGAAAATACGA+CGG | + | chr1.4:20152837-20152856 | None:intergenic | 30.0% |
| !! | TAATATGTTGGCTCCAAAAT+CGG | + | chr1.4:20152727-20152746 | None:intergenic | 30.0% |
| !! | TTTTGATTATAACCTTCCCA+AGG | + | chr1.4:20152801-20152820 | None:intergenic | 30.0% |
| AAGCCATTGTTCTTCACATA+AGG | + | chr1.4:20152387-20152406 | None:intergenic | 35.0% | |
| AGCCATTGTTCTTCACATAA+GGG | + | chr1.4:20152386-20152405 | None:intergenic | 35.0% | |
| ATAACACTAAGCACTTCCAT+TGG | + | chr1.4:20153050-20153069 | None:intergenic | 35.0% | |
| ATACCATTGGTATTTGCCTA+AGG | - | chr1.4:20153190-20153209 | MS.gene32944:CDS | 35.0% | |
| ATCATGTACAAAGTCTACCT+TGG | - | chr1.4:20152622-20152641 | MS.gene32944:CDS | 35.0% | |
| CTTCTAGTAAAAGAATCACC+TGG | + | chr1.4:20153101-20153120 | None:intergenic | 35.0% | |
| GAAGAGTAATATGATTGAGG+AGG | - | chr1.4:20153259-20153278 | MS.gene32944:CDS | 35.0% | |
| GTATGTGGAGAGAAAAATAC+AGG | + | chr1.4:20153158-20153177 | None:intergenic | 35.0% | |
| TAGTAAATGCCATCAACCAA+TGG | - | chr1.4:20153031-20153050 | MS.gene32944:CDS | 35.0% | |
| TATGTGAAGAACAATGGCTT+AGG | - | chr1.4:20152387-20152406 | MS.gene32944:CDS | 35.0% | |
| TTCGGTTTATATTGAAGAGG+GGG | - | chr1.4:20153226-20153245 | MS.gene32944:CDS | 35.0% | |
| TTGCACTTCAAGGAATTTCT+AGG | - | chr1.4:20153405-20153424 | MS.gene32944:CDS | 35.0% | |
| ! | CAGAAATGATTTTCCATGCT+AGG | - | chr1.4:20152457-20152476 | MS.gene32944:CDS | 35.0% |
| ! | CAGGTGATTCTTTTACTAGA+AGG | - | chr1.4:20153099-20153118 | MS.gene32944:CDS | 35.0% |
| !! | AATTTCTAGGCTTTTGTTCG+AGG | - | chr1.4:20153418-20153437 | MS.gene32944:CDS | 35.0% |
| !! | ACTTTTGACTCTATACTTGC+TGG | - | chr1.4:20153125-20153144 | MS.gene32944:CDS | 35.0% |
| !! | ATGATTGAGGAGGTGTTAAT+GGG | - | chr1.4:20153269-20153288 | MS.gene32944:CDS | 35.0% |
| !! | GGAAGTGCTTAGTGTTATAA+TGG | - | chr1.4:20153052-20153071 | MS.gene32944:CDS | 35.0% |
| !! | GTACCATGATGTTTTTGAGA+GGG | + | chr1.4:20152418-20152437 | None:intergenic | 35.0% |
| !! | TACCATGATGTTTTTGAGAG+GGG | + | chr1.4:20152417-20152436 | None:intergenic | 35.0% |
| !! | TATGATTGAGGAGGTGTTAA+TGG | - | chr1.4:20153268-20153287 | MS.gene32944:CDS | 35.0% |
| !! | TGTACCATGATGTTTTTGAG+AGG | + | chr1.4:20152419-20152438 | None:intergenic | 35.0% |
| !! | TTTGCAAGTTGGTTGATTGT+GGG | - | chr1.4:20153000-20153019 | MS.gene32944:CDS | 35.0% |
| AAAATGCGTGAGGTTGTGAT+TGG | - | chr1.4:20153314-20153333 | MS.gene32944:CDS | 40.0% | |
| AACAGTTGAACGACAACCTT+GGG | - | chr1.4:20152782-20152801 | MS.gene32944:CDS | 40.0% | |
| AACCCAACATCACTTCCATT+CGG | + | chr1.4:20153368-20153387 | None:intergenic | 40.0% | |
| AACCCCTCTCAAAAACATCA+TGG | - | chr1.4:20152412-20152431 | MS.gene32944:CDS | 40.0% | |
| ACCACCTGTCAAAAACATGT+CGG | - | chr1.4:20152755-20152774 | MS.gene32944:CDS | 40.0% | |
| ATCGATTAGATCAACGGCTA+GGG | + | chr1.4:20152604-20152623 | None:intergenic | 40.0% | |
| ATGGAAGTGATGTTGGGTTT+AGG | - | chr1.4:20153369-20153388 | MS.gene32944:CDS | 40.0% | |
| ATGTACAAAGTCTACCTTGG+TGG | - | chr1.4:20152625-20152644 | MS.gene32944:CDS | 40.0% | |
| CAAAAGAAGAAATGCTGACG+TGG | - | chr1.4:20152856-20152875 | MS.gene32944:CDS | 40.0% | |
| GGAAGTTGAAAAAATGCGTG+AGG | - | chr1.4:20153304-20153323 | MS.gene32944:CDS | 40.0% | |
| GGTGTTAATGGGAATTAAGG+AGG | - | chr1.4:20153280-20153299 | MS.gene32944:CDS | 40.0% | |
| GTGGGAAAAGAAAAGGGTTA+GGG | - | chr1.4:20152928-20152947 | MS.gene32944:CDS | 40.0% | |
| GTTAATGGGAATTAAGGAGG+TGG | - | chr1.4:20153283-20153302 | MS.gene32944:CDS | 40.0% | |
| TAACAGTTGAACGACAACCT+TGG | - | chr1.4:20152781-20152800 | MS.gene32944:CDS | 40.0% | |
| TATTGCGTATACGCTGTATG+TGG | + | chr1.4:20153173-20153192 | None:intergenic | 40.0% | |
| TCGGTTTATATTGAAGAGGG+GGG | - | chr1.4:20153227-20153246 | MS.gene32944:CDS | 40.0% | |
| TCTCCTTAGGCAAATACCAA+TGG | + | chr1.4:20153196-20153215 | None:intergenic | 40.0% | |
| TGAGTCATCTCTTTGCAAGT+TGG | - | chr1.4:20152989-20153008 | MS.gene32944:CDS | 40.0% | |
| TGCCCTTATGTGAAGAACAA+TGG | - | chr1.4:20152381-20152400 | MS.gene32944:CDS | 40.0% | |
| TGGAAGTGATGTTGGGTTTA+GGG | - | chr1.4:20153370-20153389 | MS.gene32944:CDS | 40.0% | |
| TTCTACATACCATTCTACGG+TGG | - | chr1.4:20152528-20152547 | MS.gene32944:CDS | 40.0% | |
| ! | CGTGATTTTCTAACCTAGCA+TGG | + | chr1.4:20152473-20152492 | None:intergenic | 40.0% |
| ! | TAAGCACTTCCATTGGTTGA+TGG | + | chr1.4:20153043-20153062 | None:intergenic | 40.0% |
| !! | ACATGTTTTTGACAGGTGGT+AGG | + | chr1.4:20152755-20152774 | None:intergenic | 40.0% |
| !! | CTTTGCAAGTTGGTTGATTG+TGG | - | chr1.4:20152999-20153018 | MS.gene32944:CDS | 40.0% |
| !! | GGAGGTGTTAATGGGAATTA+AGG | - | chr1.4:20153277-20153296 | MS.gene32944:CDS | 40.0% |
| !! | TGTGATTGGTTTGATCCCTA+GGG | - | chr1.4:20153328-20153347 | MS.gene32944:CDS | 40.0% |
| !! | TTGCAAGTTGGTTGATTGTG+GGG | - | chr1.4:20153001-20153020 | MS.gene32944:CDS | 40.0% |
| !! | TTGTGATTGGTTTGATCCCT+AGG | - | chr1.4:20153327-20153346 | MS.gene32944:CDS | 40.0% |
| ACCCAACATCACTTCCATTC+GGG | + | chr1.4:20153367-20153386 | None:intergenic | 45.0% | |
| ACCCGAATGGAAGTGATGTT+GGG | - | chr1.4:20153363-20153382 | MS.gene32944:CDS | 45.0% | |
| ATTTCATGCGGTCCTCAAGT+GGG | - | chr1.4:20152700-20152719 | MS.gene32944:CDS | 45.0% | |
| CAGCGTATACGCAATACCAT+TGG | - | chr1.4:20153177-20153196 | MS.gene32944:CDS | 45.0% | |
| GATCGATTAGATCAACGGCT+AGG | + | chr1.4:20152605-20152624 | None:intergenic | 45.0% | |
| GCTGTTGATGTTGCACTTCA+AGG | - | chr1.4:20153395-20153414 | MS.gene32944:CDS | 45.0% | |
| GGATGAAAATACGACGGGTA+AGG | + | chr1.4:20152831-20152850 | None:intergenic | 45.0% | |
| GGTGGGAAAAGAAAAGGGTT+AGG | - | chr1.4:20152927-20152946 | MS.gene32944:CDS | 45.0% | |
| ! | CGTTTTTGTCTTCAAGCACC+AGG | - | chr1.4:20153080-20153099 | MS.gene32944:CDS | 45.0% |
| ! | TATATTGAAGAGGGGGGTGT+AGG | - | chr1.4:20153233-20153252 | MS.gene32944:CDS | 45.0% |
| !! | ACCGACATGTTTTTGACAGG+TGG | + | chr1.4:20152759-20152778 | None:intergenic | 45.0% |
| !! | TGCAAGTTGGTTGATTGTGG+GGG | - | chr1.4:20153002-20153021 | MS.gene32944:CDS | 45.0% |
| !!! | AGCACCGACATGTTTTTGAC+AGG | + | chr1.4:20152762-20152781 | None:intergenic | 45.0% |
| AAAATCACGTGTGTCGCACG+TGG | - | chr1.4:20152484-20152503 | MS.gene32944:CDS | 50.0% | |
| AAATCACGTGTGTCGCACGT+GGG | - | chr1.4:20152485-20152504 | MS.gene32944:CDS | 50.0% | |
| AGTTGGTTGATTGTGGGGGT+GGG | - | chr1.4:20153006-20153025 | MS.gene32944:CDS | 50.0% | |
| CACCCGAATGGAAGTGATGT+TGG | - | chr1.4:20153362-20153381 | MS.gene32944:CDS | 50.0% | |
| CCATTGTGACGATTCCACCA+AGG | + | chr1.4:20152642-20152661 | None:intergenic | 50.0% | |
| CCTTGGTGGAATCGTCACAA+TGG | - | chr1.4:20152639-20152658 | MS.gene32944:CDS | 50.0% | |
| GATTTCATGCGGTCCTCAAG+TGG | - | chr1.4:20152699-20152718 | MS.gene32944:CDS | 50.0% | |
| GGTGCGCATAACTAACCCTA+GGG | + | chr1.4:20153346-20153365 | None:intergenic | 50.0% | |
| GTTAGTTATGCGCACCCGAA+TGG | - | chr1.4:20153350-20153369 | MS.gene32944:CDS | 50.0% | |
| GTTGAACGACAACCTTGGGA+AGG | - | chr1.4:20152786-20152805 | MS.gene32944:CDS | 50.0% | |
| TCCAAAATCGGACCCACTTG+AGG | + | chr1.4:20152715-20152734 | None:intergenic | 50.0% | |
| ! | AAGTTGGTTGATTGTGGGGG+TGG | - | chr1.4:20153005-20153024 | MS.gene32944:CDS | 50.0% |
| ! | TCCTCAAGTGGGTCCGATTT+TGG | - | chr1.4:20152711-20152730 | MS.gene32944:CDS | 50.0% |
| GCGTGTAGTCCACCGTAGAA+TGG | + | chr1.4:20152540-20152559 | None:intergenic | 55.0% | |
| GGACCGCATGAAATCCCATG+CGG | + | chr1.4:20152694-20152713 | None:intergenic | 55.0% | |
| GGACCGCATGGGATTTCATG+CGG | - | chr1.4:20152688-20152707 | MS.gene32944:CDS | 55.0% | |
| GGGTGCGCATAACTAACCCT+AGG | + | chr1.4:20153347-20153366 | None:intergenic | 55.0% | |
| ! | TTCTCTGGGAAGGACCGCAT+GGG | - | chr1.4:20152677-20152696 | MS.gene32944:CDS | 55.0% |
| ! | TTTCTCTGGGAAGGACCGCA+TGG | - | chr1.4:20152676-20152695 | MS.gene32944:CDS | 55.0% |
| CGCTTCAAGCATGTTCCGCG+AGG | - | chr1.4:20152557-20152576 | MS.gene32944:CDS | 60.0% | |
| ! | GGAGAGTGTGATTCGCCTCG+CGG | + | chr1.4:20152575-20152594 | None:intergenic | 60.0% |
| !! | GATCAACGGCTAGGGCATCG+CGG | + | chr1.4:20152596-20152615 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20152378 | 20153457 | 20152378 | ID=MS.gene32944 |
| chr1.4 | mRNA | 20152378 | 20153457 | 20152378 | ID=MS.gene32944.t1;Parent=MS.gene32944 |
| chr1.4 | exon | 20152378 | 20153457 | 20152378 | ID=MS.gene32944.t1.exon1;Parent=MS.gene32944.t1 |
| chr1.4 | CDS | 20152378 | 20153457 | 20152378 | ID=cds.MS.gene32944.t1;Parent=MS.gene32944.t1 |
| Gene Sequence |
| Protein sequence |
