Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32945.t1 | RHN78238.1 | 96.3 | 348 | 13 | 0 | 1 | 348 | 103 | 450 | 5.70E-204 | 719.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32945.t1 | Q9CA34 | 64.2 | 352 | 119 | 3 | 1 | 350 | 99 | 445 | 4.7e-138 | 492.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32945.t1 | A0A396JPN5 | 96.3 | 348 | 13 | 0 | 1 | 348 | 103 | 450 | 4.1e-204 | 719.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052129 | MS.gene32945 | 0.811227 | 7.78E-51 | -1.69E-46 |
| MS.gene053218 | MS.gene32945 | 0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene32945 | -0.80354 | 3.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75663 | MS.gene32945 | PPI |
| MS.gene036481 | MS.gene32945 | PPI |
| MS.gene79900 | MS.gene32945 | PPI |
| MS.gene77538 | MS.gene32945 | PPI |
| MS.gene045350 | MS.gene32945 | PPI |
| MS.gene035337 | MS.gene32945 | PPI |
| MS.gene041562 | MS.gene32945 | PPI |
| MS.gene58506 | MS.gene32945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32945.t1 | MTR_1g035730 | 95.690 | 348 | 15 | 0 | 1 | 348 | 103 | 450 | 0.0 | 707 |
| MS.gene32945.t1 | MTR_1g069460 | 46.197 | 355 | 182 | 3 | 1 | 348 | 185 | 537 | 7.01e-107 | 326 |
| MS.gene32945.t1 | MTR_7g098650 | 45.352 | 355 | 185 | 3 | 1 | 348 | 110 | 462 | 2.81e-105 | 320 |
| MS.gene32945.t1 | MTR_5g055350 | 43.094 | 362 | 186 | 5 | 1 | 348 | 83 | 438 | 2.15e-96 | 294 |
| MS.gene32945.t1 | MTR_3g084400 | 42.162 | 370 | 199 | 4 | 1 | 358 | 98 | 464 | 1.18e-95 | 293 |
| MS.gene32945.t1 | MTR_4g129930 | 42.618 | 359 | 192 | 4 | 1 | 348 | 102 | 457 | 2.10e-95 | 292 |
| MS.gene32945.t1 | MTR_5g095940 | 42.222 | 360 | 195 | 3 | 1 | 348 | 125 | 483 | 2.16e-90 | 280 |
| MS.gene32945.t1 | MTR_5g010370 | 40.113 | 354 | 200 | 9 | 1 | 348 | 191 | 538 | 2.94e-86 | 271 |
| MS.gene32945.t1 | MTR_3g007840 | 40.000 | 360 | 180 | 4 | 1 | 348 | 53 | 388 | 1.24e-83 | 260 |
| MS.gene32945.t1 | MTR_1g102430 | 40.997 | 361 | 192 | 10 | 2 | 348 | 132 | 485 | 1.05e-82 | 260 |
| MS.gene32945.t1 | MTR_5g010350 | 39.266 | 354 | 203 | 9 | 1 | 348 | 167 | 514 | 1.10e-81 | 258 |
| MS.gene32945.t1 | MTR_4g119810 | 35.310 | 371 | 212 | 11 | 1 | 347 | 73 | 439 | 2.98e-64 | 211 |
| MS.gene32945.t1 | MTR_5g095950 | 34.444 | 360 | 192 | 4 | 1 | 348 | 98 | 425 | 1.65e-63 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32945.t1 | AT1G68470 | 64.205 | 352 | 119 | 3 | 1 | 350 | 99 | 445 | 2.63e-173 | 490 |
| MS.gene32945.t1 | AT2G20370 | 45.352 | 355 | 185 | 3 | 1 | 348 | 182 | 534 | 6.39e-103 | 316 |
| MS.gene32945.t1 | AT2G29040 | 45.787 | 356 | 183 | 6 | 1 | 348 | 330 | 683 | 3.54e-102 | 317 |
| MS.gene32945.t1 | AT4G13990 | 43.697 | 357 | 188 | 6 | 1 | 348 | 128 | 480 | 9.25e-97 | 297 |
| MS.gene32945.t1 | AT4G13990 | 43.697 | 357 | 188 | 6 | 1 | 348 | 128 | 480 | 9.25e-97 | 297 |
| MS.gene32945.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 106 | 464 | 6.87e-91 | 281 |
| MS.gene32945.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 114 | 472 | 8.40e-91 | 281 |
| MS.gene32945.t1 | AT2G31990 | 41.713 | 362 | 194 | 9 | 1 | 348 | 152 | 510 | 2.60e-90 | 281 |
| MS.gene32945.t1 | AT5G62220 | 42.276 | 369 | 190 | 12 | 2 | 355 | 150 | 510 | 6.08e-90 | 280 |
| MS.gene32945.t1 | AT2G32750 | 40.000 | 360 | 195 | 8 | 1 | 345 | 114 | 467 | 9.67e-87 | 271 |
| MS.gene32945.t1 | AT2G32750 | 40.000 | 360 | 195 | 8 | 1 | 345 | 116 | 469 | 1.04e-86 | 271 |
| MS.gene32945.t1 | AT2G32740 | 38.798 | 366 | 198 | 9 | 2 | 348 | 98 | 456 | 1.45e-85 | 266 |
| MS.gene32945.t1 | AT5G41250 | 38.418 | 354 | 203 | 8 | 1 | 348 | 208 | 552 | 1.93e-82 | 261 |
| MS.gene32945.t1 | AT1G63450 | 39.093 | 353 | 204 | 9 | 1 | 348 | 310 | 656 | 1.61e-79 | 256 |
| MS.gene32945.t1 | AT4G22580 | 36.043 | 369 | 206 | 13 | 1 | 348 | 68 | 427 | 3.45e-65 | 213 |
| MS.gene32945.t1 | AT1G67410 | 26.515 | 264 | 134 | 10 | 25 | 264 | 103 | 330 | 2.41e-12 | 68.2 |
Find 84 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGTGGGTCCGATTT+TGG | 0.211507 | 1.4:-20144091 | MS.gene32945:CDS |
| GGAGGTGTTAATGGGAATTA+AGG | 0.251312 | 1.4:-20143525 | MS.gene32945:CDS |
| TAGAATAGAATTGCTTGATT+TGG | 0.259412 | 1.4:+20144292 | None:intergenic |
| TTGCACTTCAAGGAATTTCT+AGG | 0.273213 | 1.4:-20143397 | MS.gene32945:CDS |
| TATGATTGAGGAGGTGTTAA+TGG | 0.285044 | 1.4:-20143534 | MS.gene32945:CDS |
| ATGGAAGTGATGTTGGGTTT+AGG | 0.291151 | 1.4:-20143433 | MS.gene32945:CDS |
| TGGAAGTGATGTTGGGTTTA+GGG | 0.307951 | 1.4:-20143432 | MS.gene32945:CDS |
| TTGTGATTGGTTTGATCCCT+AGG | 0.352787 | 1.4:-20143475 | MS.gene32945:CDS |
| AAATCATTTCTGCTAAGAAT+TGG | 0.356315 | 1.4:+20144356 | None:intergenic |
| GGAAGTGCTTAGTGTTATAA+TGG | 0.363737 | 1.4:-20143750 | MS.gene32945:CDS |
| AAGCCATTGTTCTTCACATA+AGG | 0.363823 | 1.4:+20144418 | None:intergenic |
| TTTATTGGTGGGAAAAGAAA+AGG | 0.364765 | 1.4:-20143881 | MS.gene32945:CDS |
| TAAGGAGAAAGATACTTATT+CGG | 0.369735 | 1.4:-20143594 | MS.gene32945:CDS |
| TAATATGTTGGCTCCAAAAT+CGG | 0.397853 | 1.4:+20144078 | None:intergenic |
| CTTTGCAAGTTGGTTGATTG+TGG | 0.403002 | 1.4:-20143803 | MS.gene32945:CDS |
| ACCCAACATCACTTCCATTC+GGG | 0.422139 | 1.4:+20143438 | None:intergenic |
| TTTGCAAGTTGGTTGATTGT+GGG | 0.424528 | 1.4:-20143802 | MS.gene32945:CDS |
| TAAGCACTTCCATTGGTTGA+TGG | 0.433760 | 1.4:+20143762 | None:intergenic |
| AACCCAACATCACTTCCATT+CGG | 0.447585 | 1.4:+20143437 | None:intergenic |
| AACAGTTGAACGACAACCTT+GGG | 0.449885 | 1.4:-20144020 | MS.gene32945:CDS |
| GAATAAGTATCTTTCTCCTT+AGG | 0.450856 | 1.4:+20143596 | None:intergenic |
| GGTGGGAAAAGAAAAGGGTT+AGG | 0.452157 | 1.4:-20143875 | MS.gene32945:CDS |
| GCTGTTGATGTTGCACTTCA+AGG | 0.452646 | 1.4:-20143407 | MS.gene32945:CDS |
| ATGATTGAGGAGGTGTTAAT+GGG | 0.454804 | 1.4:-20143533 | MS.gene32945:CDS |
| ACCCGAATGGAAGTGATGTT+GGG | 0.466760 | 1.4:-20143439 | MS.gene32945:CDS |
| AAAGAAGAGTAATATGATTG+AGG | 0.481487 | 1.4:-20143546 | MS.gene32945:CDS |
| AGCCATTGTTCTTCACATAA+GGG | 0.484383 | 1.4:+20144419 | None:intergenic |
| AAAATGCGTGAGGTTGTGAT+TGG | 0.487547 | 1.4:-20143488 | MS.gene32945:CDS |
| TTATTGGTGGGAAAAGAAAA+GGG | 0.491095 | 1.4:-20143880 | MS.gene32945:CDS |
| GGATGAAAATACGACGGGTA+AGG | 0.495809 | 1.4:+20143974 | None:intergenic |
| TGCAAGTTGGTTGATTGTGG+GGG | 0.509533 | 1.4:-20143800 | MS.gene32945:CDS |
| TGTGATTGGTTTGATCCCTA+GGG | 0.510208 | 1.4:-20143474 | MS.gene32945:CDS |
| CACCCGAATGGAAGTGATGT+TGG | 0.518128 | 1.4:-20143440 | MS.gene32945:CDS |
| CTATTCTACATACCATTCTA+CGG | 0.525739 | 1.4:-20144277 | MS.gene32945:CDS |
| GATTTCATGCGGTCCTCAAG+TGG | 0.526085 | 1.4:-20144103 | MS.gene32945:CDS |
| TGAGTCATCTCTTTGCAAGT+TGG | 0.526643 | 1.4:-20143813 | MS.gene32945:CDS |
| ATCGATTAGATCAACGGCTA+GGG | 0.530004 | 1.4:+20144201 | None:intergenic |
| TATTCGGTTTATATTGAAGA+GGG | 0.531841 | 1.4:-20143578 | MS.gene32945:CDS |
| GTTAGTTATGCGCACCCGAA+TGG | 0.531970 | 1.4:-20143452 | MS.gene32945:CDS |
| TCCAAAATCGGACCCACTTG+AGG | 0.536553 | 1.4:+20144090 | None:intergenic |
| TATGTGAAGAACAATGGCTT+AGG | 0.537393 | 1.4:-20144415 | MS.gene32945:CDS |
| GCGTGTAGTCCACCGTAGAA+TGG | 0.538340 | 1.4:+20144265 | None:intergenic |
| ATAACACTAAGCACTTCCAT+TGG | 0.539587 | 1.4:+20143755 | None:intergenic |
| ATACCATTGGTATTTGCCTA+AGG | 0.541550 | 1.4:-20143612 | MS.gene32945:CDS |
| TTCGGTTTATATTGAAGAGG+GGG | 0.546993 | 1.4:-20143576 | MS.gene32945:CDS |
| ATGTACAAAGTCTACCTTGG+TGG | 0.552088 | 1.4:-20144177 | MS.gene32945:CDS |
| TTTCTCTGGGAAGGACCGCA+TGG | 0.552309 | 1.4:-20144126 | MS.gene32945:CDS |
| TACATGATCGATTAGATCAA+CGG | 0.552809 | 1.4:+20144195 | None:intergenic |
| AAAATCACGTGTGTCGCACG+TGG | 0.553844 | 1.4:-20144318 | MS.gene32945:CDS |
| TCTCCTTAGGCAAATACCAA+TGG | 0.555859 | 1.4:+20143609 | None:intergenic |
| GTGGGAAAAGAAAAGGGTTA+GGG | 0.560862 | 1.4:-20143874 | MS.gene32945:CDS |
| TGGGAAGGTTATAATCAAAA+CGG | 0.566648 | 1.4:-20144001 | MS.gene32945:CDS |
| TTGCAAGTTGGTTGATTGTG+GGG | 0.567948 | 1.4:-20143801 | MS.gene32945:CDS |
| TTCTCTGGGAAGGACCGCAT+GGG | 0.570266 | 1.4:-20144125 | MS.gene32945:CDS |
| TAACAGTTGAACGACAACCT+TGG | 0.570721 | 1.4:-20144021 | MS.gene32945:CDS |
| GTTAATGGGAATTAAGGAGG+TGG | 0.571636 | 1.4:-20143519 | MS.gene32945:CDS |
| ATAAAATGAGACAAAACGAC+AGG | 0.573735 | 1.4:-20143919 | MS.gene32945:CDS |
| GATCGATTAGATCAACGGCT+AGG | 0.575788 | 1.4:+20144200 | None:intergenic |
| TGGTAGGTTTAATAATATGT+TGG | 0.579142 | 1.4:+20144066 | None:intergenic |
| CAGCGTATACGCAATACCAT+TGG | 0.583630 | 1.4:-20143625 | MS.gene32945:CDS |
| GAAGAGTAATATGATTGAGG+AGG | 0.587479 | 1.4:-20143543 | MS.gene32945:CDS |
| GGGTGCGCATAACTAACCCT+AGG | 0.588239 | 1.4:+20143458 | None:intergenic |
| TAGTAAATGCCATCAACCAA+TGG | 0.589401 | 1.4:-20143771 | MS.gene32945:CDS |
| CAAAAGAAGAAATGCTGACG+TGG | 0.592552 | 1.4:-20143946 | MS.gene32945:CDS |
| TCGGTTTATATTGAAGAGGG+GGG | 0.595261 | 1.4:-20143575 | MS.gene32945:CDS |
| ATTTCATGCGGTCCTCAAGT+GGG | 0.605471 | 1.4:-20144102 | MS.gene32945:CDS |
| ATCATGTACAAAGTCTACCT+TGG | 0.607581 | 1.4:-20144180 | MS.gene32945:CDS |
| CTTCTAGTAAAAGAATCACC+TGG | 0.626474 | 1.4:+20143704 | None:intergenic |
| GGTGCGCATAACTAACCCTA+GGG | 0.632069 | 1.4:+20143459 | None:intergenic |
| ATTCGGTTTATATTGAAGAG+GGG | 0.633941 | 1.4:-20143577 | MS.gene32945:CDS |
| TTATTCGGTTTATATTGAAG+AGG | 0.635875 | 1.4:-20143579 | MS.gene32945:CDS |
| GTTGAACGACAACCTTGGGA+AGG | 0.641260 | 1.4:-20144016 | MS.gene32945:CDS |
| CCTTGGTGGAATCGTCACAA+TGG | 0.642551 | 1.4:-20144163 | MS.gene32945:CDS |
| GGTGTTAATGGGAATTAAGG+AGG | 0.648081 | 1.4:-20143522 | MS.gene32945:CDS |
| GGAGAGTGTGATTCGCCTCG+CGG | 0.649710 | 1.4:+20144230 | None:intergenic |
| TATTGCGTATACGCTGTATG+TGG | 0.654666 | 1.4:+20143632 | None:intergenic |
| CGCTTCAAGCATGTTCCGCG+AGG | 0.663884 | 1.4:-20144245 | MS.gene32945:CDS |
| AAATCACGTGTGTCGCACGT+GGG | 0.664225 | 1.4:-20144317 | MS.gene32945:CDS |
| GGACCGCATGGGATTTCATG+CGG | 0.671183 | 1.4:-20144114 | MS.gene32945:CDS |
| TGCCCTTATGTGAAGAACAA+TGG | 0.674537 | 1.4:-20144421 | MS.gene32945:CDS |
| TTCTACATACCATTCTACGG+TGG | 0.700629 | 1.4:-20144274 | MS.gene32945:CDS |
| CCATTGTGACGATTCCACCA+AGG | 0.717299 | 1.4:+20144163 | None:intergenic |
| GATCAACGGCTAGGGCATCG+CGG | 0.732029 | 1.4:+20144209 | None:intergenic |
| GGACCGCATGAAATCCCATG+CGG | 0.771513 | 1.4:+20144111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAATAAATGAAAACAAAAA+CGG | + | chr1.4:20143898-20143917 | None:intergenic | 20.0% |
| !!! | AAAGATCATTTTATTTCTCT+GGG | - | chr1.4:20143652-20143671 | MS.gene32945:CDS | 20.0% |
| !!! | TAAAGATCATTTTATTTCTC+TGG | - | chr1.4:20143651-20143670 | MS.gene32945:CDS | 20.0% |
| !!! | TTTTGTTTTCATTTATTGGT+GGG | - | chr1.4:20143899-20143918 | MS.gene32945:CDS | 20.0% |
| !!! | TTTTTGTTTTCATTTATTGG+TGG | - | chr1.4:20143898-20143917 | MS.gene32945:CDS | 20.0% |
| ! | AAAGAAGAGTAATATGATTG+AGG | - | chr1.4:20144245-20144264 | MS.gene32945:CDS | 25.0% |
| ! | AAATCATTTCTGCTAAGAAT+TGG | + | chr1.4:20143438-20143457 | None:intergenic | 25.0% |
| ! | TAAGGAGAAAGATACTTATT+CGG | - | chr1.4:20144197-20144216 | MS.gene32945:CDS | 25.0% |
| ! | TAGAATAGAATTGCTTGATT+TGG | + | chr1.4:20143502-20143521 | None:intergenic | 25.0% |
| ! | TATTCGGTTTATATTGAAGA+GGG | - | chr1.4:20144213-20144232 | MS.gene32945:CDS | 25.0% |
| ! | TGGTAGGTTTAATAATATGT+TGG | + | chr1.4:20143728-20143747 | None:intergenic | 25.0% |
| ! | TTATTCGGTTTATATTGAAG+AGG | - | chr1.4:20144212-20144231 | MS.gene32945:CDS | 25.0% |
| !!! | AGCATTTCTTCTTTTGTTTT+TGG | + | chr1.4:20143841-20143860 | None:intergenic | 25.0% |
| !!! | CCGTTTTTGTTTTCATTTAT+TGG | - | chr1.4:20143895-20143914 | MS.gene32945:CDS | 25.0% |
| ATAAAATGAGACAAAACGAC+AGG | - | chr1.4:20143872-20143891 | MS.gene32945:CDS | 30.0% | |
| ATTCGGTTTATATTGAAGAG+GGG | - | chr1.4:20144214-20144233 | MS.gene32945:CDS | 30.0% | |
| CTATTCTACATACCATTCTA+CGG | - | chr1.4:20143514-20143533 | MS.gene32945:CDS | 30.0% | |
| GAATAAGTATCTTTCTCCTT+AGG | + | chr1.4:20144198-20144217 | None:intergenic | 30.0% | |
| TACATGATCGATTAGATCAA+CGG | + | chr1.4:20143599-20143618 | None:intergenic | 30.0% | |
| TGGGAAGGTTATAATCAAAA+CGG | - | chr1.4:20143790-20143809 | MS.gene32945:CDS | 30.0% | |
| TTATTGGTGGGAAAAGAAAA+GGG | - | chr1.4:20143911-20143930 | MS.gene32945:CDS | 30.0% | |
| TTTATTGGTGGGAAAAGAAA+AGG | - | chr1.4:20143910-20143929 | MS.gene32945:CDS | 30.0% | |
| ! | TTTTTGGATGAAAATACGAC+GGG | + | chr1.4:20143825-20143844 | None:intergenic | 30.0% |
| !! | ATCATTTTATTTCTCTGGGA+AGG | - | chr1.4:20143656-20143675 | MS.gene32945:CDS | 30.0% |
| !! | GTTTTTGGATGAAAATACGA+CGG | + | chr1.4:20143826-20143845 | None:intergenic | 30.0% |
| !! | TAATATGTTGGCTCCAAAAT+CGG | + | chr1.4:20143716-20143735 | None:intergenic | 30.0% |
| !! | TTTTGATTATAACCTTCCCA+AGG | + | chr1.4:20143790-20143809 | None:intergenic | 30.0% |
| AAGCCATTGTTCTTCACATA+AGG | + | chr1.4:20143376-20143395 | None:intergenic | 35.0% | |
| AGCCATTGTTCTTCACATAA+GGG | + | chr1.4:20143375-20143394 | None:intergenic | 35.0% | |
| ATAACACTAAGCACTTCCAT+TGG | + | chr1.4:20144039-20144058 | None:intergenic | 35.0% | |
| ATACCATTGGTATTTGCCTA+AGG | - | chr1.4:20144179-20144198 | MS.gene32945:CDS | 35.0% | |
| ATCATGTACAAAGTCTACCT+TGG | - | chr1.4:20143611-20143630 | MS.gene32945:CDS | 35.0% | |
| CTTCTAGTAAAAGAATCACC+TGG | + | chr1.4:20144090-20144109 | None:intergenic | 35.0% | |
| GAAGAGTAATATGATTGAGG+AGG | - | chr1.4:20144248-20144267 | MS.gene32945:CDS | 35.0% | |
| GTATGTGGAGAGAAAAATAC+AGG | + | chr1.4:20144147-20144166 | None:intergenic | 35.0% | |
| TAGTAAATGCCATCAACCAA+TGG | - | chr1.4:20144020-20144039 | MS.gene32945:CDS | 35.0% | |
| TATGTGAAGAACAATGGCTT+AGG | - | chr1.4:20143376-20143395 | MS.gene32945:CDS | 35.0% | |
| TTCGGTTTATATTGAAGAGG+GGG | - | chr1.4:20144215-20144234 | MS.gene32945:CDS | 35.0% | |
| TTGCACTTCAAGGAATTTCT+AGG | - | chr1.4:20144394-20144413 | MS.gene32945:CDS | 35.0% | |
| ! | CAGAAATGATTTTCCATGCT+AGG | - | chr1.4:20143446-20143465 | MS.gene32945:CDS | 35.0% |
| ! | CAGGTGATTCTTTTACTAGA+AGG | - | chr1.4:20144088-20144107 | MS.gene32945:CDS | 35.0% |
| !! | AATTTCTAGGCTTTTGTTCG+AGG | - | chr1.4:20144407-20144426 | MS.gene32945:CDS | 35.0% |
| !! | ACTTTTGACTCTATACTTGC+TGG | - | chr1.4:20144114-20144133 | MS.gene32945:CDS | 35.0% |
| !! | ATGATTGAGGAGGTGTTAAT+GGG | - | chr1.4:20144258-20144277 | MS.gene32945:CDS | 35.0% |
| !! | GGAAGTGCTTAGTGTTATAA+TGG | - | chr1.4:20144041-20144060 | MS.gene32945:CDS | 35.0% |
| !! | GTACCATGATGTTTTTGAGA+GGG | + | chr1.4:20143407-20143426 | None:intergenic | 35.0% |
| !! | TACCATGATGTTTTTGAGAG+GGG | + | chr1.4:20143406-20143425 | None:intergenic | 35.0% |
| !! | TATGATTGAGGAGGTGTTAA+TGG | - | chr1.4:20144257-20144276 | MS.gene32945:CDS | 35.0% |
| !! | TGTACCATGATGTTTTTGAG+AGG | + | chr1.4:20143408-20143427 | None:intergenic | 35.0% |
| !! | TTTGCAAGTTGGTTGATTGT+GGG | - | chr1.4:20143989-20144008 | MS.gene32945:CDS | 35.0% |
| AAAATGCGTGAGGTTGTGAT+TGG | - | chr1.4:20144303-20144322 | MS.gene32945:CDS | 40.0% | |
| AACAGTTGAACGACAACCTT+GGG | - | chr1.4:20143771-20143790 | MS.gene32945:CDS | 40.0% | |
| AACCCAACATCACTTCCATT+CGG | + | chr1.4:20144357-20144376 | None:intergenic | 40.0% | |
| AACCCCTCTCAAAAACATCA+TGG | - | chr1.4:20143401-20143420 | MS.gene32945:CDS | 40.0% | |
| ACCACCTGTCAAAAACATGT+CGG | - | chr1.4:20143744-20143763 | MS.gene32945:CDS | 40.0% | |
| ATCGATTAGATCAACGGCTA+GGG | + | chr1.4:20143593-20143612 | None:intergenic | 40.0% | |
| ATGGAAGTGATGTTGGGTTT+AGG | - | chr1.4:20144358-20144377 | MS.gene32945:CDS | 40.0% | |
| ATGTACAAAGTCTACCTTGG+TGG | - | chr1.4:20143614-20143633 | MS.gene32945:CDS | 40.0% | |
| CAAAAGAAGAAATGCTGACG+TGG | - | chr1.4:20143845-20143864 | MS.gene32945:CDS | 40.0% | |
| GGAAGTTGAAAAAATGCGTG+AGG | - | chr1.4:20144293-20144312 | MS.gene32945:CDS | 40.0% | |
| GGTGTTAATGGGAATTAAGG+AGG | - | chr1.4:20144269-20144288 | MS.gene32945:CDS | 40.0% | |
| GTGGGAAAAGAAAAGGGTTA+GGG | - | chr1.4:20143917-20143936 | MS.gene32945:CDS | 40.0% | |
| GTTAATGGGAATTAAGGAGG+TGG | - | chr1.4:20144272-20144291 | MS.gene32945:CDS | 40.0% | |
| TAACAGTTGAACGACAACCT+TGG | - | chr1.4:20143770-20143789 | MS.gene32945:CDS | 40.0% | |
| TATTGCGTATACGCTGTATG+TGG | + | chr1.4:20144162-20144181 | None:intergenic | 40.0% | |
| TCGGTTTATATTGAAGAGGG+GGG | - | chr1.4:20144216-20144235 | MS.gene32945:CDS | 40.0% | |
| TCTCCTTAGGCAAATACCAA+TGG | + | chr1.4:20144185-20144204 | None:intergenic | 40.0% | |
| TGAGTCATCTCTTTGCAAGT+TGG | - | chr1.4:20143978-20143997 | MS.gene32945:CDS | 40.0% | |
| TGCCCTTATGTGAAGAACAA+TGG | - | chr1.4:20143370-20143389 | MS.gene32945:CDS | 40.0% | |
| TGGAAGTGATGTTGGGTTTA+GGG | - | chr1.4:20144359-20144378 | MS.gene32945:CDS | 40.0% | |
| TTCTACATACCATTCTACGG+TGG | - | chr1.4:20143517-20143536 | MS.gene32945:CDS | 40.0% | |
| ! | CGTGATTTTCTAACCTAGCA+TGG | + | chr1.4:20143462-20143481 | None:intergenic | 40.0% |
| ! | TAAGCACTTCCATTGGTTGA+TGG | + | chr1.4:20144032-20144051 | None:intergenic | 40.0% |
| !! | ACATGTTTTTGACAGGTGGT+AGG | + | chr1.4:20143744-20143763 | None:intergenic | 40.0% |
| !! | CTTTGCAAGTTGGTTGATTG+TGG | - | chr1.4:20143988-20144007 | MS.gene32945:CDS | 40.0% |
| !! | GGAGGTGTTAATGGGAATTA+AGG | - | chr1.4:20144266-20144285 | MS.gene32945:CDS | 40.0% |
| !! | TGTGATTGGTTTGATCCCTA+GGG | - | chr1.4:20144317-20144336 | MS.gene32945:CDS | 40.0% |
| !! | TTGCAAGTTGGTTGATTGTG+GGG | - | chr1.4:20143990-20144009 | MS.gene32945:CDS | 40.0% |
| !! | TTGTGATTGGTTTGATCCCT+AGG | - | chr1.4:20144316-20144335 | MS.gene32945:CDS | 40.0% |
| ACCCAACATCACTTCCATTC+GGG | + | chr1.4:20144356-20144375 | None:intergenic | 45.0% | |
| ACCCGAATGGAAGTGATGTT+GGG | - | chr1.4:20144352-20144371 | MS.gene32945:CDS | 45.0% | |
| ATTTCATGCGGTCCTCAAGT+GGG | - | chr1.4:20143689-20143708 | MS.gene32945:CDS | 45.0% | |
| CAGCGTATACGCAATACCAT+TGG | - | chr1.4:20144166-20144185 | MS.gene32945:CDS | 45.0% | |
| GATCGATTAGATCAACGGCT+AGG | + | chr1.4:20143594-20143613 | None:intergenic | 45.0% | |
| GCTGTTGATGTTGCACTTCA+AGG | - | chr1.4:20144384-20144403 | MS.gene32945:CDS | 45.0% | |
| GGATGAAAATACGACGGGTA+AGG | + | chr1.4:20143820-20143839 | None:intergenic | 45.0% | |
| GGTGGGAAAAGAAAAGGGTT+AGG | - | chr1.4:20143916-20143935 | MS.gene32945:CDS | 45.0% | |
| ! | CGTTTTTGTCTTCAAGCACC+AGG | - | chr1.4:20144069-20144088 | MS.gene32945:CDS | 45.0% |
| ! | TATATTGAAGAGGGGGGTGT+AGG | - | chr1.4:20144222-20144241 | MS.gene32945:CDS | 45.0% |
| !! | ACCGACATGTTTTTGACAGG+TGG | + | chr1.4:20143748-20143767 | None:intergenic | 45.0% |
| !! | TGCAAGTTGGTTGATTGTGG+GGG | - | chr1.4:20143991-20144010 | MS.gene32945:CDS | 45.0% |
| !!! | AGCACCGACATGTTTTTGAC+AGG | + | chr1.4:20143751-20143770 | None:intergenic | 45.0% |
| AAAATCACGTGTGTCGCACG+TGG | - | chr1.4:20143473-20143492 | MS.gene32945:CDS | 50.0% | |
| AAATCACGTGTGTCGCACGT+GGG | - | chr1.4:20143474-20143493 | MS.gene32945:CDS | 50.0% | |
| AGTTGGTTGATTGTGGGGGT+GGG | - | chr1.4:20143995-20144014 | MS.gene32945:CDS | 50.0% | |
| CACCCGAATGGAAGTGATGT+TGG | - | chr1.4:20144351-20144370 | MS.gene32945:CDS | 50.0% | |
| CCATTGTGACGATTCCACCA+AGG | + | chr1.4:20143631-20143650 | None:intergenic | 50.0% | |
| CCTTGGTGGAATCGTCACAA+TGG | - | chr1.4:20143628-20143647 | MS.gene32945:CDS | 50.0% | |
| GATTTCATGCGGTCCTCAAG+TGG | - | chr1.4:20143688-20143707 | MS.gene32945:CDS | 50.0% | |
| GGTGCGCATAACTAACCCTA+GGG | + | chr1.4:20144335-20144354 | None:intergenic | 50.0% | |
| GTTAGTTATGCGCACCCGAA+TGG | - | chr1.4:20144339-20144358 | MS.gene32945:CDS | 50.0% | |
| GTTGAACGACAACCTTGGGA+AGG | - | chr1.4:20143775-20143794 | MS.gene32945:CDS | 50.0% | |
| TCCAAAATCGGACCCACTTG+AGG | + | chr1.4:20143704-20143723 | None:intergenic | 50.0% | |
| ! | AAGTTGGTTGATTGTGGGGG+TGG | - | chr1.4:20143994-20144013 | MS.gene32945:CDS | 50.0% |
| ! | TCCTCAAGTGGGTCCGATTT+TGG | - | chr1.4:20143700-20143719 | MS.gene32945:CDS | 50.0% |
| GCGTGTAGTCCACCGTAGAA+TGG | + | chr1.4:20143529-20143548 | None:intergenic | 55.0% | |
| GGACCGCATGAAATCCCATG+CGG | + | chr1.4:20143683-20143702 | None:intergenic | 55.0% | |
| GGACCGCATGGGATTTCATG+CGG | - | chr1.4:20143677-20143696 | MS.gene32945:CDS | 55.0% | |
| GGGTGCGCATAACTAACCCT+AGG | + | chr1.4:20144336-20144355 | None:intergenic | 55.0% | |
| ! | TTCTCTGGGAAGGACCGCAT+GGG | - | chr1.4:20143666-20143685 | MS.gene32945:CDS | 55.0% |
| ! | TTTCTCTGGGAAGGACCGCA+TGG | - | chr1.4:20143665-20143684 | MS.gene32945:CDS | 55.0% |
| CGCTTCAAGCATGTTCCGCG+AGG | - | chr1.4:20143546-20143565 | MS.gene32945:CDS | 60.0% | |
| ! | GGAGAGTGTGATTCGCCTCG+CGG | + | chr1.4:20143564-20143583 | None:intergenic | 60.0% |
| !! | GATCAACGGCTAGGGCATCG+CGG | + | chr1.4:20143585-20143604 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20143367 | 20144446 | 20143367 | ID=MS.gene32945 |
| chr1.4 | mRNA | 20143367 | 20144446 | 20143367 | ID=MS.gene32945.t1;Parent=MS.gene32945 |
| chr1.4 | exon | 20143367 | 20144446 | 20143367 | ID=MS.gene32945.t1.exon1;Parent=MS.gene32945.t1 |
| chr1.4 | CDS | 20143367 | 20144446 | 20143367 | ID=cds.MS.gene32945.t1;Parent=MS.gene32945.t1 |
| Gene Sequence |
| Protein sequence |
