AlfalfaGEDB | MS.gene03676

M. sativa cultivar XinJiangDaYe / MS.gene03676

KEGG: K11982
GO: GO:0003674 GO:0003824 GO:0004842 GO:0016740 GO:0019787 GO:0061630 GO:0061659 GO:0140096
PFAM: PF13639.9 PF14369.9 PF14634.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03676.t1	XP_024630372.1	97.1	279	8	0	1	279	2	280	5.00E-155	557

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03676.t1	Q94AK4	43.7	293	115	9	2	272	3	267	1.4e-52	208.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03676.t1	A0A072TI97	97.1	279	8	0	1	279	2	280	3.6e-155	557.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene23916	MS.gene03676	PPI
MS.gene93134	MS.gene03676	PPI
MS.gene03676	MS.gene037357	PPI
MS.gene05880	MS.gene03676	PPI
MS.gene03676	MS.gene049084	PPI
MS.gene015787	MS.gene03676	PPI
MS.gene03676	MS.gene23913	PPI
MS.gene029216	MS.gene03676	PPI
MS.gene03676	MS.gene05958	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03676.t1	MTR_0067s0100	97.491	279	7	0	1	279	2	280	0.0	563
MS.gene03676.t1	MTR_5g088720	60.274	292	92	6	1	271	1	289	6.20e-114	331
MS.gene03676.t1	MTR_5g088720	60.274	292	92	6	1	271	47	335	7.66e-114	332
MS.gene03676.t1	MTR_5g088720	60.274	292	92	6	1	271	6	294	8.92e-114	331
MS.gene03676.t1	MTR_1g051105	41.241	274	107	8	6	278	8	228	1.15e-55	180
MS.gene03676.t1	MTR_3g072630	33.725	255	134	7	7	234	20	266	1.57e-36	132
MS.gene03676.t1	MTR_3g072630	33.725	255	134	7	7	234	20	266	1.81e-36	132
MS.gene03676.t1	MTR_3g068005	32.830	265	123	10	1	234	1	241	3.34e-32	122
MS.gene03676.t1	MTR_6g079660	53.922	102	43	2	137	234	179	280	5.39e-32	121
MS.gene03676.t1	MTR_4g064570	35.565	239	121	8	6	234	11	226	1.84e-31	120
MS.gene03676.t1	MTR_2g097620	33.984	256	116	8	2	234	9	234	3.85e-31	119
MS.gene03676.t1	MTR_3g083480	28.152	341	156	14	5	270	7	333	8.73e-30	115
MS.gene03676.t1	MTR_1g114320	29.921	254	156	9	7	250	13	254	2.04e-28	110
MS.gene03676.t1	MTR_5g080350	60.563	71	28	0	164	234	168	238	8.45e-26	105
MS.gene03676.t1	MTR_2g007340	60.938	64	25	0	170	233	182	245	9.16e-24	98.6
MS.gene03676.t1	MTR_7g074170	36.134	119	68	3	137	247	289	407	1.68e-19	88.2
MS.gene03676.t1	MTR_1g114620	45.977	87	45	1	148	234	225	309	7.61e-19	85.1
MS.gene03676.t1	MTR_6g032960	40.000	140	68	7	143	272	189	322	2.01e-18	84.0
MS.gene03676.t1	MTR_5g041330	44.318	88	45	2	148	234	66	150	4.54e-18	80.9
MS.gene03676.t1	MTR_5g041310	43.182	88	46	2	148	234	76	160	4.64e-18	81.3
MS.gene03676.t1	MTR_1g014710	29.299	157	95	5	101	243	133	287	8.59e-17	79.3
MS.gene03676.t1	MTR_4g110100	29.333	150	97	5	87	234	263	405	2.05e-15	75.9
MS.gene03676.t1	MTR_5g058530	50.847	59	28	1	176	233	210	268	1.75e-14	72.8
MS.gene03676.t1	MTR_3g088080	37.500	80	45	2	158	234	6	83	4.98e-13	63.9
MS.gene03676.t1	MTR_7g059360	33.333	87	54	2	153	235	119	205	6.99e-12	64.3
MS.gene03676.t1	MTR_3g025510	30.693	101	70	0	130	230	46	146	7.98e-12	62.4
MS.gene03676.t1	MTR_6g016350	34.884	86	54	2	150	234	272	356	1.17e-11	64.7
MS.gene03676.t1	MTR_3g087900	34.483	87	55	2	171	256	52	137	2.18e-11	61.2
MS.gene03676.t1	MTR_3g025380	31.250	80	55	0	151	230	56	135	5.71e-11	59.7
MS.gene03676.t1	MTR_3g031000	32.039	103	58	3	136	234	247	341	7.24e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03676.t1	AT2G40830	43.377	302	117	11	2	271	3	282	1.80e-64	205
MS.gene03676.t1	AT2G40830	43.377	302	117	11	2	271	3	282	1.80e-64	205
MS.gene03676.t1	AT2G40830	43.377	302	117	11	2	271	3	282	1.80e-64	205
MS.gene03676.t1	AT2G40830	43.377	302	117	11	2	271	3	282	1.80e-64	205
MS.gene03676.t1	AT3G56580	43.493	292	115	9	2	271	3	266	2.91e-63	202
MS.gene03676.t1	AT3G56580	43.493	292	115	9	2	271	3	266	2.91e-63	202
MS.gene03676.t1	AT3G56580	43.493	292	115	9	2	271	3	266	2.91e-63	202
MS.gene03676.t1	AT3G19950	30.389	283	177	10	7	271	21	301	8.81e-38	136
MS.gene03676.t1	AT3G19950	30.389	283	177	10	7	271	79	359	2.40e-37	136
MS.gene03676.t1	AT3G19950	30.389	283	177	10	7	271	79	359	2.40e-37	136
MS.gene03676.t1	AT4G26400	29.970	337	156	12	5	269	3	331	1.27e-35	131
MS.gene03676.t1	AT4G26400	29.970	337	156	12	5	269	3	331	1.27e-35	131
MS.gene03676.t1	AT3G10815	47.015	134	50	3	148	279	78	192	2.08e-34	124
MS.gene03676.t1	AT3G46620	29.839	248	138	6	6	234	30	260	1.84e-30	118
MS.gene03676.t1	AT1G60360	29.371	286	180	9	7	272	24	307	1.51e-29	114
MS.gene03676.t1	AT1G55530	29.555	247	135	8	7	234	9	235	2.54e-27	108
MS.gene03676.t1	AT1G55530	28.358	268	144	9	7	234	9	268	1.35e-26	107
MS.gene03676.t1	AT1G55530	28.358	268	144	9	7	234	9	268	1.35e-26	107
MS.gene03676.t1	AT5G59550	45.455	110	50	2	143	242	145	254	5.29e-26	106
MS.gene03676.t1	AT5G56340	36.420	162	68	4	137	270	209	363	5.73e-26	105
MS.gene03676.t1	AT5G59550	45.455	110	50	2	143	242	250	359	1.09e-25	106
MS.gene03676.t1	AT2G39720	52.885	104	38	3	142	234	143	246	2.16e-25	104
MS.gene03676.t1	AT2G39720	52.885	104	38	3	142	234	143	246	2.16e-25	104
MS.gene03676.t1	AT3G13430	42.000	100	50	2	139	234	175	270	1.09e-22	95.5
MS.gene03676.t1	AT3G13430	42.000	100	50	2	139	234	175	270	1.09e-22	95.5
MS.gene03676.t1	AT3G13430	42.000	100	50	2	139	234	175	270	1.09e-22	95.5
MS.gene03676.t1	AT3G13430	42.000	100	50	2	139	234	175	270	1.09e-22	95.5
MS.gene03676.t1	AT1G68180	39.516	124	71	2	149	271	98	218	1.85e-22	93.2
MS.gene03676.t1	AT5G01980	40.708	113	60	2	137	242	295	407	5.93e-22	95.5
MS.gene03676.t1	AT5G20910	38.095	105	60	2	144	243	180	284	5.98e-19	85.1
MS.gene03676.t1	AT2G44330	53.521	71	27	1	170	234	71	141	1.43e-17	79.0
MS.gene03676.t1	AT3G60080	48.052	77	32	1	170	238	142	218	2.86e-17	80.5
MS.gene03676.t1	AT1G14200	36.283	113	68	2	124	234	44	154	7.35e-17	77.0
MS.gene03676.t1	AT5G15820	43.038	79	44	1	157	234	258	336	1.64e-16	79.0
MS.gene03676.t1	AT1G26800	42.169	83	44	1	155	237	83	161	1.69e-16	76.6
MS.gene03676.t1	AT3G02340	36.458	96	59	2	140	234	286	380	5.87e-16	77.8
MS.gene03676.t1	AT3G02340	36.458	96	59	2	140	234	286	380	5.87e-16	77.8
MS.gene03676.t1	AT5G60820	34.906	106	65	1	133	234	312	417	1.44e-15	76.6
MS.gene03676.t1	AT5G08139	36.937	111	58	5	133	234	247	354	1.71e-14	73.2
MS.gene03676.t1	AT5G64920	41.429	70	41	0	164	233	232	301	7.27e-14	70.9
MS.gene03676.t1	AT2G44578	47.368	57	29	1	184	239	65	121	4.66e-12	62.8
MS.gene03676.t1	AT2G44581	46.667	60	31	1	177	235	58	117	1.01e-11	62.0
MS.gene03676.t1	AT3G63530	36.667	90	50	2	148	233	155	241	2.42e-11	62.8
MS.gene03676.t1	AT3G63530	36.667	90	50	2	148	233	155	241	2.42e-11	62.8
MS.gene03676.t1	AT1G18780	31.061	132	74	6	115	234	196	322	6.86e-11	62.4

Find 73 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAAATCTTTCTATACAAAT+TGG	0.226745	3.4:-35586260	None:intergenic
ATGGACGTGGTAGTCGAAAT+TGG	0.260747	3.4:+35586399	MS.gene03676:CDS
GTCAGAAGAAGATCTGTTTC+TGG	0.278583	3.4:+35585981	MS.gene03676:CDS
GATCATAGGCGCTCTGATTT+TGG	0.287542	3.4:+35586089	MS.gene03676:CDS
AGAGGTTCTGTACCAAGAAT+TGG	0.309620	3.4:+35585894	MS.gene03676:CDS
AAGATTTGAACTCGGCTCTA+AGG	0.350121	3.4:+35586274	MS.gene03676:CDS
ATGTGCTTGTGTGATCTTAA+TGG	0.358030	3.4:-35586216	None:intergenic
ACACAGCCAATCTTGCTTGC+AGG	0.360454	3.4:+35585729	MS.gene03676:CDS
TTCTGTTCCTGAACAGACTT+GGG	0.365372	3.4:+35586004	MS.gene03676:CDS
GCATCTCTAAACCCAATTCT+TGG	0.367507	3.4:-35585906	None:intergenic
TCCCTCCCTGCAAGCAAGAT+TGG	0.373236	3.4:-35585735	None:intergenic
GTTCTGTTCCTGAACAGACT+TGG	0.377775	3.4:+35586003	MS.gene03676:CDS
TGTATAGCATCGAAAATATC+AGG	0.379466	3.4:-35585855	None:intergenic
TGGACGTGGTAGTCGAAATT+GGG	0.379594	3.4:+35586400	MS.gene03676:CDS
AGTACTGGTCAAAACAATAA+TGG	0.392816	3.4:+35586440	MS.gene03676:CDS
TCTTCTGACATCAAAGTTTG+TGG	0.397858	3.4:-35585967	None:intergenic
TGTCAAGGAGAGCAACATTC+TGG	0.399266	3.4:+35585694	MS.gene03676:CDS
AGAACGAAATGGCCACAAAA+AGG	0.405744	3.4:-35586486	None:intergenic
GAGGTTCTGTACCAAGAATT+GGG	0.412921	3.4:+35585895	MS.gene03676:CDS
CGGCTCTAAGGCAAGGGAAA+TGG	0.417056	3.4:+35586286	MS.gene03676:CDS
GGTCGTTATTTAATATTTCA+AGG	0.426693	3.4:+35586044	MS.gene03676:CDS
TCAATGATTAGTATTTGAAT+TGG	0.428413	3.4:-35586510	None:intergenic
AAAACACCCCAAGTCTGTTC+AGG	0.436514	3.4:-35586011	None:intergenic
GAAGATCGTGAGGCCGGGGC+TGG	0.441156	3.4:-35586176	None:intergenic
GGAAGCTCAACACGGCAAAC+AGG	0.443011	3.4:-35586371	None:intergenic
ACTCAGACTGCATTGTTCCT+TGG	0.451088	3.4:+35586327	MS.gene03676:CDS
GCCAATCTTGCTTGCAGGGA+GGG	0.468123	3.4:+35585734	MS.gene03676:CDS
CGTGTTGAGCTTCCGCCTCA+TGG	0.473836	3.4:+35586380	MS.gene03676:CDS
TCAATTGAAGATCGTGAGGC+CGG	0.478607	3.4:-35586182	None:intergenic
TTTGAATTGGAAGAACGAAA+TGG	0.479669	3.4:-35586497	None:intergenic
CAATTGAAGATCGTGAGGCC+GGG	0.489376	3.4:-35586181	None:intergenic
CTACCTCTAGAGGTGATCAT+AGG	0.500049	3.4:+35586075	MS.gene03676:CDS
GGTGGCTACTTTATGGATCA+CGG	0.507619	3.4:+35586110	MS.gene03676:CDS
ACAAATCCTCCATCGCAGTA+AGG	0.508538	3.4:-35585768	None:intergenic
CACAGCCAATCTTGCTTGCA+GGG	0.514266	3.4:+35585730	MS.gene03676:CDS
GGAAGGAATGGCAATAGTAC+TGG	0.515587	3.4:+35586425	MS.gene03676:CDS
TAGTTACATGAGGCAGAGAA+TGG	0.521893	3.4:+35585935	MS.gene03676:CDS
AAAATGGATTTCTCCTTCCT+CGG	0.526678	3.4:-35586463	None:intergenic
GCAGTTTGCCCTTACTGCGA+TGG	0.532835	3.4:+35585759	MS.gene03676:CDS
ACAAATTGGACAATGTGAAT+CGG	0.536227	3.4:-35586246	None:intergenic
TACATGAGGCAGAGAATGGA+TGG	0.536380	3.4:+35585939	MS.gene03676:CDS
AATTGAAGATCGTGAGGCCG+GGG	0.540826	3.4:-35586180	None:intergenic
CAAATCCTCCATCGCAGTAA+GGG	0.544283	3.4:-35585767	None:intergenic
ACTTGCATCGTCATCACAGT+TGG	0.546615	3.4:+35585815	MS.gene03676:CDS
CATGCTGTTGTAAGTCAAAG+AGG	0.548595	3.4:+35585876	MS.gene03676:CDS
CGAAATTGGGGAGGAAGGAA+TGG	0.550846	3.4:+35586413	MS.gene03676:CDS
GAGCTTCCGCCTCATGGACG+TGG	0.556833	3.4:+35586386	MS.gene03676:CDS
TTGAACTCGGCTCTAAGGCA+AGG	0.563629	3.4:+35586279	MS.gene03676:CDS
GTTTGCCCTTACTGCGATGG+AGG	0.563964	3.4:+35585762	MS.gene03676:CDS
AAACACTCGTGGTCCAGCCC+CGG	0.566850	3.4:+35586163	MS.gene03676:CDS
AAAACAATAATGGCCGAGGA+AGG	0.581703	3.4:+35586450	MS.gene03676:CDS
GTAGTCGAAATTGGGGAGGA+AGG	0.591965	3.4:+35586408	MS.gene03676:CDS
GGTCAAAACAATAATGGCCG+AGG	0.593224	3.4:+35586446	MS.gene03676:CDS
TGCTTCAATTGAAGATCGTG+AGG	0.596957	3.4:-35586186	None:intergenic
CTATGATCACCTCTAGAGGT+AGG	0.604277	3.4:-35586074	None:intergenic
CGACTACCACGTCCATGAGG+CGG	0.618242	3.4:-35586392	None:intergenic
GTGAAGGAGAAATAATGTCA+AGG	0.623077	3.4:+35585679	None:intergenic
TGTATAGAAAGATTTGAACT+CGG	0.625011	3.4:+35586266	MS.gene03676:CDS
GGTCAAACACCTACCTCTAG+AGG	0.627382	3.4:+35586065	MS.gene03676:CDS
GGACGTGGTAGTCGAAATTG+GGG	0.636262	3.4:+35586401	MS.gene03676:CDS
TGAACTCGGCTCTAAGGCAA+GGG	0.639396	3.4:+35586280	MS.gene03676:CDS
TCTGTTCCTGAACAGACTTG+GGG	0.643196	3.4:+35586005	MS.gene03676:CDS
AGCCAATCTTGCTTGCAGGG+AGG	0.650442	3.4:+35585733	MS.gene03676:CDS
AAGGAACAATGCAGTCTGAG+TGG	0.654795	3.4:-35586325	None:intergenic
CAAGAAATGCATGAGAATCG+AGG	0.661832	3.4:+35585792	MS.gene03676:CDS
CATGAGGCGGAAGCTCAACA+CGG	0.662432	3.4:-35586379	None:intergenic
GCGCCTATGATCACCTCTAG+AGG	0.663521	3.4:-35586078	None:intergenic
CGTGGTAGTCGAAATTGGGG+AGG	0.667418	3.4:+35586404	MS.gene03676:CDS
ATGCTATTGATAGTTACATG+AGG	0.671620	3.4:+35585925	MS.gene03676:CDS
CAACTCAATACAAACACTCG+TGG	0.681335	3.4:+35586152	MS.gene03676:CDS
GAATTATGCTGAATTAACCA+AGG	0.687405	3.4:-35586344	None:intergenic
GCTTGTGTGATCTTAATGGT+AGG	0.695857	3.4:-35586212	None:intergenic
TTTCGACTACCACGTCCATG+AGG	0.706639	3.4:-35586395	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCAAATCTTTCTATACAAAT+TGG	-	chr3.4:35586263-35586282	None:intergenic	20.0%
!!	TCAATGATTAGTATTTGAAT+TGG	-	chr3.4:35586513-35586532	None:intergenic	20.0%
!	GGTCGTTATTTAATATTTCA+AGG	+	chr3.4:35586044-35586063	MS.gene03676:CDS	25.0%
!	TGTATAGAAAGATTTGAACT+CGG	+	chr3.4:35586266-35586285	MS.gene03676:CDS	25.0%
	ACAAATTGGACAATGTGAAT+CGG	-	chr3.4:35586249-35586268	None:intergenic	30.0%
	GAATTATGCTGAATTAACCA+AGG	-	chr3.4:35586347-35586366	None:intergenic	30.0%
	TTTGAATTGGAAGAACGAAA+TGG	-	chr3.4:35586500-35586519	None:intergenic	30.0%
!	ATGCTATTGATAGTTACATG+AGG	+	chr3.4:35585925-35585944	MS.gene03676:CDS	30.0%
!	GAAATCCATTTTCCTTTTTG+TGG	+	chr3.4:35586474-35586493	MS.gene03676:CDS	30.0%
!	TGTATAGCATCGAAAATATC+AGG	-	chr3.4:35585858-35585877	None:intergenic	30.0%
!!	AGTACTGGTCAAAACAATAA+TGG	+	chr3.4:35586440-35586459	MS.gene03676:CDS	30.0%
	AATGGCCACAAAAAGGAAAA+TGG	-	chr3.4:35586482-35586501	None:intergenic	35.0%
	ATGTGCTTGTGTGATCTTAA+TGG	-	chr3.4:35586219-35586238	None:intergenic	35.0%
	TCTTCTGACATCAAAGTTTG+TGG	-	chr3.4:35585970-35585989	None:intergenic	35.0%
!	AAAATGGATTTCTCCTTCCT+CGG	-	chr3.4:35586466-35586485	None:intergenic	35.0%
!!	TGATTTTGGTGGCTACTTTA+TGG	+	chr3.4:35586103-35586122	MS.gene03676:CDS	35.0%
	AAAACAATAATGGCCGAGGA+AGG	+	chr3.4:35586450-35586469	MS.gene03676:CDS	40.0%
	AAGATTTGAACTCGGCTCTA+AGG	+	chr3.4:35586274-35586293	MS.gene03676:CDS	40.0%
	AGAACGAAATGGCCACAAAA+AGG	-	chr3.4:35586489-35586508	None:intergenic	40.0%
	AGAGGTTCTGTACCAAGAAT+TGG	+	chr3.4:35585894-35585913	MS.gene03676:CDS	40.0%
	CAACTCAATACAAACACTCG+TGG	+	chr3.4:35586152-35586171	MS.gene03676:CDS	40.0%
	CAAGAAATGCATGAGAATCG+AGG	+	chr3.4:35585792-35585811	MS.gene03676:CDS	40.0%
	CATGCTGTTGTAAGTCAAAG+AGG	+	chr3.4:35585876-35585895	MS.gene03676:CDS	40.0%
	GAGGTTCTGTACCAAGAATT+GGG	+	chr3.4:35585895-35585914	MS.gene03676:CDS	40.0%
	GCATCTCTAAACCCAATTCT+TGG	-	chr3.4:35585909-35585928	None:intergenic	40.0%
	GCTTGTGTGATCTTAATGGT+AGG	-	chr3.4:35586215-35586234	None:intergenic	40.0%
	GTCAGAAGAAGATCTGTTTC+TGG	+	chr3.4:35585981-35586000	MS.gene03676:CDS	40.0%
	TAGTTACATGAGGCAGAGAA+TGG	+	chr3.4:35585935-35585954	MS.gene03676:CDS	40.0%
	TGCTTCAATTGAAGATCGTG+AGG	-	chr3.4:35586189-35586208	None:intergenic	40.0%
	TTCTGTTCCTGAACAGACTT+GGG	+	chr3.4:35586004-35586023	MS.gene03676:CDS	40.0%
!!!	TGGGGTGTTTTTAGTTCTTC+TGG	+	chr3.4:35586023-35586042	MS.gene03676:CDS	40.0%
	AAAACACCCCAAGTCTGTTC+AGG	-	chr3.4:35586014-35586033	None:intergenic	45.0%
	AAGGAACAATGCAGTCTGAG+TGG	-	chr3.4:35586328-35586347	None:intergenic	45.0%
	ACAAATCCTCCATCGCAGTA+AGG	-	chr3.4:35585771-35585790	None:intergenic	45.0%
	ACTCAGACTGCATTGTTCCT+TGG	+	chr3.4:35586327-35586346	MS.gene03676:CDS	45.0%
	ACTTGCATCGTCATCACAGT+TGG	+	chr3.4:35585815-35585834	MS.gene03676:CDS	45.0%
	ATGGACGTGGTAGTCGAAAT+TGG	+	chr3.4:35586399-35586418	MS.gene03676:CDS	45.0%
	CAAATCCTCCATCGCAGTAA+GGG	-	chr3.4:35585770-35585789	None:intergenic	45.0%
	GGAAGGAATGGCAATAGTAC+TGG	+	chr3.4:35586425-35586444	MS.gene03676:CDS	45.0%
	GGTCAAAACAATAATGGCCG+AGG	+	chr3.4:35586446-35586465	MS.gene03676:CDS	45.0%
	GTTCTGTTCCTGAACAGACT+TGG	+	chr3.4:35586003-35586022	MS.gene03676:CDS	45.0%
	TACATGAGGCAGAGAATGGA+TGG	+	chr3.4:35585939-35585958	MS.gene03676:CDS	45.0%
	TCAATTGAAGATCGTGAGGC+CGG	-	chr3.4:35586185-35586204	None:intergenic	45.0%
	TCTGTTCCTGAACAGACTTG+GGG	+	chr3.4:35586005-35586024	MS.gene03676:CDS	45.0%
	TGGACGTGGTAGTCGAAATT+GGG	+	chr3.4:35586400-35586419	MS.gene03676:CDS	45.0%
	TGTCAAGGAGAGCAACATTC+TGG	+	chr3.4:35585694-35585713	MS.gene03676:CDS	45.0%
!	CTACCTCTAGAGGTGATCAT+AGG	+	chr3.4:35586075-35586094	MS.gene03676:CDS	45.0%
!	CTATGATCACCTCTAGAGGT+AGG	-	chr3.4:35586077-35586096	None:intergenic	45.0%
!	GATCATAGGCGCTCTGATTT+TGG	+	chr3.4:35586089-35586108	MS.gene03676:CDS	45.0%
!	GGTGGCTACTTTATGGATCA+CGG	+	chr3.4:35586110-35586129	MS.gene03676:CDS	45.0%
	AATTGAAGATCGTGAGGCCG+GGG	-	chr3.4:35586183-35586202	None:intergenic	50.0%
	ACACAGCCAATCTTGCTTGC+AGG	+	chr3.4:35585729-35585748	MS.gene03676:CDS	50.0%
	CAATTGAAGATCGTGAGGCC+GGG	-	chr3.4:35586184-35586203	None:intergenic	50.0%
	CACAGCCAATCTTGCTTGCA+GGG	+	chr3.4:35585730-35585749	MS.gene03676:CDS	50.0%
	CGAAATTGGGGAGGAAGGAA+TGG	+	chr3.4:35586413-35586432	MS.gene03676:CDS	50.0%
	GGACGTGGTAGTCGAAATTG+GGG	+	chr3.4:35586401-35586420	MS.gene03676:CDS	50.0%
	GGTCAAACACCTACCTCTAG+AGG	+	chr3.4:35586065-35586084	MS.gene03676:CDS	50.0%
	GTAGTCGAAATTGGGGAGGA+AGG	+	chr3.4:35586408-35586427	MS.gene03676:CDS	50.0%
	TTTCGACTACCACGTCCATG+AGG	-	chr3.4:35586398-35586417	None:intergenic	50.0%
!	CATAGGCGCTCTGATTTTGG+TGG	+	chr3.4:35586092-35586111	MS.gene03676:CDS	50.0%
!!	TGAACTCGGCTCTAAGGCAA+GGG	+	chr3.4:35586280-35586299	MS.gene03676:CDS	50.0%
!!	TTGAACTCGGCTCTAAGGCA+AGG	+	chr3.4:35586279-35586298	MS.gene03676:CDS	50.0%
	AGCCAATCTTGCTTGCAGGG+AGG	+	chr3.4:35585733-35585752	MS.gene03676:CDS	55.0%
	CATGAGGCGGAAGCTCAACA+CGG	-	chr3.4:35586382-35586401	None:intergenic	55.0%
	CGTGGTAGTCGAAATTGGGG+AGG	+	chr3.4:35586404-35586423	MS.gene03676:CDS	55.0%
	GCAGTTTGCCCTTACTGCGA+TGG	+	chr3.4:35585759-35585778	MS.gene03676:CDS	55.0%
	GCCAATCTTGCTTGCAGGGA+GGG	+	chr3.4:35585734-35585753	MS.gene03676:CDS	55.0%
	GCGCCTATGATCACCTCTAG+AGG	-	chr3.4:35586081-35586100	None:intergenic	55.0%
	GGAAGCTCAACACGGCAAAC+AGG	-	chr3.4:35586374-35586393	None:intergenic	55.0%
	GTTTGCCCTTACTGCGATGG+AGG	+	chr3.4:35585762-35585781	MS.gene03676:CDS	55.0%
	TCCCTCCCTGCAAGCAAGAT+TGG	-	chr3.4:35585738-35585757	None:intergenic	55.0%
!!	CGGCTCTAAGGCAAGGGAAA+TGG	+	chr3.4:35586286-35586305	MS.gene03676:CDS	55.0%
	AAACACTCGTGGTCCAGCCC+CGG	+	chr3.4:35586163-35586182	MS.gene03676:CDS	60.0%
	CGACTACCACGTCCATGAGG+CGG	-	chr3.4:35586395-35586414	None:intergenic	60.0%
	CGTGTTGAGCTTCCGCCTCA+TGG	+	chr3.4:35586380-35586399	MS.gene03676:CDS	60.0%
	GAGCTTCCGCCTCATGGACG+TGG	+	chr3.4:35586386-35586405	MS.gene03676:CDS	65.0%
	GAAGATCGTGAGGCCGGGGC+TGG	-	chr3.4:35586179-35586198	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	35585693	35586532	35585693	ID=MS.gene03676
chr3.4	mRNA	35585693	35586532	35585693	ID=MS.gene03676.t1;Parent=MS.gene03676
chr3.4	exon	35585693	35586532	35585693	ID=MS.gene03676.t1.exon1;Parent=MS.gene03676.t1
chr3.4	CDS	35585693	35586532	35585693	ID=cds.MS.gene03676.t1;Parent=MS.gene03676.t1

Gene Sequence

>MS.gene03676

ATGTCAAGGAGAGCAACATTCTGGTGTCATACATGCACACAGCCAATCTTGCTTGCAGGGAGGGATGCAGTTTGCCCTTACTGCGATGGAGGATTTGTGCAAGAAATGCATGAGAATCGAGGACTTGCATCGTCATCACAGTTGGAAGAGTTTCAAGATGATCCTGATATTTTCGATGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAATTGGGTTTAGAGATGCTATTGATAGTTACATGAGGCAGAGAATGGATGGAAGAGCCACAAACTTTGATGTCAGAAGAAGATCTGTTTCTGGTTCTGTTCCTGAACAGACTTGGGGTGTTTTTAGTTCTTCTGGTCGTTATTTAATATTTCAAGGTCAAACACCTACCTCTAGAGGTGATCATAGGCGCTCTGATTTTGGTGGCTACTTTATGGATCACGGACTAGATGAACTTATCGAACAACTCAATACAAACACTCGTGGTCCAGCCCCGGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTTCACTCCGATTCACATTGTCCAATTTGTATAGAAAGATTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATTTACCACTCAGACTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTTCCGCCTCATGGACGTGGTAGTCGAAATTGGGGAGGAAGGAATGGCAATAGTACTGGTCAAAACAATAATGGCCGAGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCATTTCGTTCTTCCAATTCAAATACTAATCATTGA

Protein sequence

>MS.gene03676.t1

MSRRATFWCHTCTQPILLAGRDAVCPYCDGGFVQEMHENRGLASSSQLEEFQDDPDIFDAIHAVVSQRGSVPRIGFRDAIDSYMRQRMDGRATNFDVRRRSVSGSVPEQTWGVFSSSGRYLIFQGQTPTSRGDHRRSDFGGYFMDHGLDELIEQLNTNTRGPAPASRSSIEAMPTIKITQAHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSRNWGGRNGNSTGQNNNGRGRRNPFSFLWPFRSSNSNTNH