AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03722

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03722.t1 MTR_4g056520 95.918 392 16 0 1 392 46 437 0.0 761
MS.gene03722.t1 MTR_2g084530 67.654 405 121 4 1 398 46 447 0.0 522
MS.gene03722.t1 MTR_4g084710 26.952 397 233 12 10 391 63 417 3.34e-31 124
MS.gene03722.t1 MTR_5g097180 26.884 398 232 12 10 391 61 415 1.53e-30 122
MS.gene03722.t1 MTR_4g057600 25.185 405 247 11 1 391 110 472 1.22e-29 120
MS.gene03722.t1 MTR_1g050545 26.355 406 240 12 1 390 98 460 9.17e-27 112
MS.gene03722.t1 MTR_2g095750 25.743 404 245 12 1 390 115 477 1.96e-26 111
MS.gene03722.t1 MTR_4g057570 25.743 404 248 10 1 390 104 469 2.79e-26 110
MS.gene03722.t1 MTR_4g057595 24.190 401 254 9 1 390 112 473 2.72e-25 107
MS.gene03722.t1 MTR_4g057585 23.881 402 254 9 1 390 111 472 7.31e-25 106
MS.gene03722.t1 MTR_1g094155 24.634 410 243 13 1 391 105 467 8.79e-24 103
MS.gene03722.t1 MTR_2g012850 24.638 414 252 16 1 390 64 441 6.93e-22 97.4
MS.gene03722.t1 MTR_2g095730 23.951 405 254 11 1 390 109 474 7.13e-21 94.7
MS.gene03722.t1 MTR_8g099930 25.000 356 224 11 10 346 65 396 1.57e-20 93.6
MS.gene03722.t1 MTR_3g079590 25.679 405 243 16 1 391 107 467 2.39e-20 93.2
MS.gene03722.t1 MTR_4g089155 24.879 414 253 17 1 390 82 461 3.19e-20 92.8
MS.gene03722.t1 MTR_2g012860 35.669 157 91 4 1 151 70 222 1.61e-19 90.5
MS.gene03722.t1 MTR_7g080180 21.480 419 264 14 20 390 74 475 1.81e-19 90.5
MS.gene03722.t1 MTR_1g020090 25.686 401 231 17 10 391 122 474 2.41e-19 90.1
MS.gene03722.t1 MTR_3g498755 24.760 416 245 14 4 390 45 421 4.13e-19 89.0
MS.gene03722.t1 MTR_8g011350 23.721 430 259 16 10 390 63 472 5.31e-19 89.0
MS.gene03722.t1 MTR_3g079620 24.755 408 251 14 1 391 107 475 1.04e-18 88.2
MS.gene03722.t1 MTR_3g079560 24.505 404 249 16 1 391 107 467 1.41e-18 87.8
MS.gene03722.t1 MTR_1g021020 24.096 415 234 15 1 391 107 464 1.86e-18 87.4
MS.gene03722.t1 MTR_1g040370 28.261 230 143 8 4 222 60 278 6.14e-18 85.5
MS.gene03722.t1 MTR_8g011350 21.964 387 243 11 10 349 63 437 1.60e-17 84.7
MS.gene03722.t1 MTR_7g080180 21.390 374 243 11 20 349 74 440 1.66e-17 84.3
MS.gene03722.t1 MTR_3g114620 47.170 106 19 2 77 182 19 87 3.21e-17 76.6
MS.gene03722.t1 MTR_3g079570 25.304 411 236 18 1 391 108 467 6.41e-17 82.8
MS.gene03722.t1 MTR_3g434850 23.308 399 266 13 4 390 60 430 8.19e-17 82.4
MS.gene03722.t1 MTR_4g075150 24.205 409 259 14 1 390 63 439 1.06e-16 82.0
MS.gene03722.t1 MTR_1g021010 22.716 405 253 14 1 391 105 463 1.12e-16 82.0
MS.gene03722.t1 MTR_4g075150 23.961 409 258 14 1 390 63 437 1.32e-16 81.6
MS.gene03722.t1 MTR_2g449850 26.196 397 249 16 10 390 70 438 1.74e-16 81.3
MS.gene03722.t1 MTR_7g051430 22.273 440 254 14 10 390 62 472 2.27e-16 81.3
MS.gene03722.t1 MTR_3g079600 22.113 407 258 13 1 391 105 468 2.64e-16 80.9
MS.gene03722.t1 MTR_3g090130 23.940 401 259 14 10 391 60 433 5.03e-16 80.1
MS.gene03722.t1 MTR_4g122950 25.120 418 264 18 1 396 68 458 1.11e-15 79.0
MS.gene03722.t1 MTR_7g021130 26.012 346 209 12 20 346 74 391 1.16e-15 79.0
MS.gene03722.t1 MTR_0003s0560 24.528 212 136 6 2 192 102 310 2.13e-15 77.4
MS.gene03722.t1 MTR_3g034290 23.098 368 220 13 2 347 103 429 2.32e-15 78.2
MS.gene03722.t1 MTR_5g072570 31.333 150 95 3 10 151 61 210 2.64e-15 77.8
MS.gene03722.t1 MTR_0003s0560 28.000 150 102 2 11 154 108 257 1.05e-14 75.9
MS.gene03722.t1 MTR_3g090150 31.579 152 94 4 10 151 65 216 1.72e-14 75.1
MS.gene03722.t1 MTR_2g062980 28.302 159 104 5 1 152 69 224 2.37e-14 74.7
MS.gene03722.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.45e-14 73.9
MS.gene03722.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.93e-14 73.9
MS.gene03722.t1 MTR_7g051430 31.410 156 91 5 10 151 62 215 9.12e-14 72.8
MS.gene03722.t1 MTR_7g013790 22.622 389 256 12 20 390 79 440 1.41e-13 72.4
MS.gene03722.t1 MTR_3g079630 29.193 161 103 5 1 154 107 263 1.48e-13 72.4
MS.gene03722.t1 MTR_2g063000 29.078 141 89 4 1 133 68 205 2.00e-13 72.0
MS.gene03722.t1 MTR_2g062990 29.496 139 89 4 1 133 69 204 4.23e-13 70.9
MS.gene03722.t1 MTR_3g034290 26.994 163 105 5 2 155 103 260 4.68e-13 70.5
MS.gene03722.t1 MTR_2g081620 27.044 159 106 5 1 152 70 225 8.02e-13 70.1
MS.gene03722.t1 MTR_1g095540 30.147 136 83 4 1 128 62 193 1.67e-12 68.9
MS.gene03722.t1 MTR_4g122960 29.851 134 84 4 1 128 68 197 2.00e-12 68.9
MS.gene03722.t1 MTR_2g018600 22.877 424 241 18 10 390 66 446 6.82e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03722.t1 AT2G27920 63.054 406 142 2 1 398 47 452 0.0 518
MS.gene03722.t1 AT2G27920 60.743 377 140 2 30 398 4 380 6.62e-160 455
MS.gene03722.t1 AT2G27920 57.692 338 135 2 69 398 48 385 1.58e-132 385
MS.gene03722.t1 AT1G15000 26.448 397 232 10 10 392 55 405 5.44e-30 120
MS.gene03722.t1 AT5G22980 26.238 404 241 11 1 390 113 473 3.54e-29 119
MS.gene03722.t1 AT3G45010 25.062 403 249 12 1 390 116 478 5.49e-29 118
MS.gene03722.t1 AT3G10410 25.307 407 243 13 1 391 114 475 2.67e-23 102
MS.gene03722.t1 AT4G12910 22.196 428 266 13 10 390 67 474 3.88e-19 89.7
MS.gene03722.t1 AT4G15100 25.490 408 263 15 1 390 73 457 7.78e-19 88.6
MS.gene03722.t1 AT2G35780 23.775 408 254 14 1 390 59 427 4.37e-18 86.3
MS.gene03722.t1 AT1G11080 24.079 407 272 14 1 390 79 465 2.49e-17 84.0
MS.gene03722.t1 AT1G11080 24.079 407 272 14 1 390 79 465 2.56e-17 84.0
MS.gene03722.t1 AT3G52000 25.193 389 232 16 20 390 108 455 3.74e-17 83.6
MS.gene03722.t1 AT3G07990 24.198 405 258 15 1 390 63 433 3.97e-17 83.2
MS.gene03722.t1 AT1G43780 26.383 235 145 7 10 226 69 293 4.57e-17 83.2
MS.gene03722.t1 AT4G12910 21.875 384 245 11 10 349 67 439 6.01e-17 82.8
MS.gene03722.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.29e-16 81.6
MS.gene03722.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.29e-16 81.6
MS.gene03722.t1 AT5G42240 27.155 232 135 7 10 219 64 283 2.68e-16 80.9
MS.gene03722.t1 AT3G63470 22.922 397 265 14 2 390 110 473 4.13e-16 80.5
MS.gene03722.t1 AT5G23210 28.241 216 141 6 1 207 80 290 5.41e-16 79.7
MS.gene03722.t1 AT3G25420 23.133 415 258 14 20 390 74 471 5.51e-16 80.1
MS.gene03722.t1 AT5G23210 27.679 224 148 6 1 215 80 298 6.06e-16 79.7
MS.gene03722.t1 AT4G30810 24.318 403 261 18 1 390 67 438 1.17e-15 79.0
MS.gene03722.t1 AT3G17180 25.391 256 159 10 1 240 68 307 1.68e-15 78.2
MS.gene03722.t1 AT2G33530 23.426 397 265 14 10 390 65 438 2.25e-15 78.2
MS.gene03722.t1 AT3G17180 25.391 256 159 10 1 240 68 307 2.49e-15 77.8
MS.gene03722.t1 AT2G12480 31.333 150 95 3 10 151 63 212 3.95e-15 77.0
MS.gene03722.t1 AT2G12480 31.333 150 95 3 10 151 63 212 4.20e-15 77.0
MS.gene03722.t1 AT2G12480 31.333 150 95 3 10 151 63 212 4.22e-15 77.0
MS.gene03722.t1 AT2G12480 31.333 150 95 3 10 151 63 212 4.65e-15 77.0
MS.gene03722.t1 AT2G24010 33.582 134 79 3 1 128 59 188 4.75e-15 77.0
MS.gene03722.t1 AT3G52020 24.372 398 238 18 15 390 118 474 7.65e-15 76.6
MS.gene03722.t1 AT1G61130 34.043 141 84 3 20 151 75 215 9.04e-15 76.3
MS.gene03722.t1 AT5G08260 29.341 167 98 5 1 155 69 227 1.04e-14 75.9
MS.gene03722.t1 AT3G02110 30.935 139 90 2 20 152 81 219 1.97e-14 75.1
MS.gene03722.t1 AT2G24000 34.783 115 69 2 20 128 75 189 3.45e-14 74.3
MS.gene03722.t1 AT1G28110 24.523 367 233 13 4 353 61 400 2.72e-13 71.6
MS.gene03722.t1 AT1G28110 24.523 367 233 13 4 353 61 400 2.72e-13 71.6
MS.gene03722.t1 AT2G05850 22.556 399 243 15 16 390 104 460 6.66e-13 70.5
MS.gene03722.t1 AT4G30610 32.558 129 77 3 10 128 63 191 5.22e-12 67.8
MS.gene03722.t1 AT1G73290 30.534 131 76 3 1 121 61 186 5.59e-12 66.6
MS.gene03722.t1 AT1G73290 30.534 131 76 3 1 121 61 186 9.47e-12 66.6
MS.gene03722.t1 AT1G73290 30.534 131 76 3 1 121 61 186 1.03e-11 66.6
MS.gene03722.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.31e-11 66.2
MS.gene03722.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.31e-11 66.2
MS.gene03722.t1 AT5G36180 31.298 131 75 3 1 121 62 187 2.40e-11 65.5
MS.gene03722.t1 AT2G35770 28.302 159 101 5 1 151 67 220 2.43e-11 65.5
MS.gene03722.t1 AT5G22960 29.167 120 70 1 20 139 63 167 3.44e-11 62.4
MS.gene03722.t1 AT1G73270 29.012 162 99 4 1 151 62 218 7.09e-11 63.9
MS.gene03722.t1 AT1G73270 29.012 162 99 4 1 151 62 218 7.47e-11 63.9
MS.gene03722.t1 AT1G73280 21.667 420 237 14 1 390 62 419 8.40e-11 63.9

Find 95 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGCAACCATAGAATTAT+TGG 0.199759 4.3:-44356660 None:intergenic
CTACAATTCTATTGGATTCT+TGG 0.200204 4.3:+44360081 MS.gene03722:CDS
CTTCTTACCTCATCTATTCT+TGG 0.218674 4.3:-44359185 None:intergenic
AAACTTGGCGCTTTACTAAA+TGG 0.231890 4.3:+44358984 MS.gene03722:CDS
AATTCAACTTGGTTGTTAAA+AGG 0.250631 4.3:+44356974 MS.gene03722:CDS
GGCAAATTTGCTGTCACTCT+TGG 0.293076 4.3:+44357565 MS.gene03722:CDS
CAAGAATCCAATAGAATTGT+AGG 0.295802 4.3:-44360080 None:intergenic
GTCATTGGATAGGGTGCTTC+AGG 0.303141 4.3:+44356893 MS.gene03722:intron
TACAATTTCTTGGTCGATTC+GGG 0.308824 4.3:+44358843 MS.gene03722:CDS
TTGCAGAAGCACACATGTTT+TGG 0.324024 4.3:+44356589 None:intergenic
TAGACTTACGTGACATTCTC+AGG 0.332673 4.3:-44359035 None:intergenic
AAGATAAGTGAAAACTTCAT+TGG 0.346770 4.3:-44359144 None:intergenic
TTACTTACCACAAAATCTTC+TGG 0.356577 4.3:-44358051 None:intergenic
TTACAATTTCTTGGTCGATT+CGG 0.359915 4.3:+44358842 MS.gene03722:CDS
TACATTGTGGCAGAGTCTTA+TGG 0.367175 4.3:+44357541 MS.gene03722:CDS
TCTTATGTAGGTGTGGCATT+AGG 0.374191 4.3:+44358012 MS.gene03722:intron
GCCAATAATTCTATGGTTGC+AGG 0.374696 4.3:+44356659 MS.gene03722:CDS
AGCCATGGCCAATAATTCTA+TGG 0.383429 4.3:+44356652 MS.gene03722:CDS
GGATAGGGTGCTTCAGGTGT+TGG 0.387749 4.3:+44356899 MS.gene03722:intron
AGAAGAAGACCTTGTCCTTA+GGG 0.396772 4.3:-44358946 None:intergenic
GATAGGGTGCTTCAGGTGTT+GGG 0.400100 4.3:+44356900 MS.gene03722:intron
GAGAAGAAGACCTTGTCCTT+AGG 0.404625 4.3:-44358947 None:intergenic
GTAGTGTTTACCGTTGAGTT+TGG 0.409872 4.3:+44360708 MS.gene03722:intron
GAAGAATCTTCCACTCTGTA+TGG 0.410067 4.3:-44356627 None:intergenic
GTCTCAAGACTCGATGATAA+TGG 0.410949 4.3:+44358301 MS.gene03722:CDS
TTCTTGGTCGATTCGGGAAG+TGG 0.417221 4.3:+44358849 MS.gene03722:CDS
AACCCAAGCTTCAGTCCCTT+TGG 0.424615 4.3:-44359640 None:intergenic
AACAACCAAGTTGAATTCCT+TGG 0.429599 4.3:-44356968 None:intergenic
CCTTAGGGAAGTAAGATACT+TGG 0.431765 4.3:-44358931 None:intergenic
GATAGTAACATTGGCTCCCT+TGG 0.440557 4.3:-44359338 None:intergenic
AAACTGTATCCTGTTCCAAC+TGG 0.449212 4.3:-44357406 None:intergenic
TTCTATTGGATTCTTGGAGC+TGG 0.449461 4.3:+44360087 MS.gene03722:CDS
GGTGCTTCAGGTGTTGGGAT+TGG 0.451236 4.3:+44356905 MS.gene03722:CDS
AAAAGGAGATCTCTTGTTTG+TGG 0.452395 4.3:+44356991 MS.gene03722:CDS
CGAGTCTTGAGACGTCTTTG+AGG 0.459472 4.3:-44358291 None:intergenic
TCTTTATTCCGTAGGTGGGA+AGG 0.462971 4.3:+44359970 MS.gene03722:intron
AAGGGACTGAAGCTTGGGTT+AGG 0.462980 4.3:+44359643 MS.gene03722:CDS
TACCAAAGGGACTGAAGCTT+GGG 0.469620 4.3:+44359638 MS.gene03722:CDS
TAGGACAATCCAGTTGGAAC+AGG 0.473654 4.3:+44357397 MS.gene03722:intron
CTACCAAAGGGACTGAAGCT+TGG 0.476951 4.3:+44359637 MS.gene03722:CDS
ATCTAATTTGTGCTACCAAA+GGG 0.486363 4.3:+44359625 MS.gene03722:CDS
CTTTATTCCGTAGGTGGGAA+GGG 0.493124 4.3:+44359971 MS.gene03722:intron
GATTAATAAAAGAAAGATCA+AGG 0.496246 4.3:+44358898 MS.gene03722:CDS
AGGACAAGGTCTTCTTCTCC+TGG 0.502448 4.3:+44358951 MS.gene03722:CDS
ATCTGAATATGTAGTTGTCA+TGG 0.508315 4.3:+44358260 MS.gene03722:intron
AACCATAGAATTATTGGCCA+TGG 0.514363 4.3:-44356654 None:intergenic
AAATTGAAACTTACACTTGG+AGG 0.521572 4.3:+44357619 MS.gene03722:CDS
TAAAAGAAAGATCAAGGAAG+AGG 0.522688 4.3:+44358904 MS.gene03722:CDS
TTAATGATGCAACTGACTCA+TGG 0.525154 4.3:+44358496 MS.gene03722:CDS
TGAATTCCTTGGCTTCAAGC+TGG 0.530012 4.3:-44356957 None:intergenic
TGGATACCAGCTTGAAGCCA+AGG 0.530260 4.3:+44356951 MS.gene03722:CDS
TGAAGCCAAGGAATTCAACT+TGG 0.532529 4.3:+44356963 MS.gene03722:CDS
TCCATTGTAGATAGTAACAT+TGG 0.536914 4.3:-44359347 None:intergenic
ATCAAGAAGCAACTTGAAGA+TGG 0.537399 4.3:+44358468 MS.gene03722:CDS
CCTGGTGGTGATGATAAACT+TGG 0.538460 4.3:+44358969 MS.gene03722:CDS
GATCTAATTTGTGCTACCAA+AGG 0.546200 4.3:+44359624 MS.gene03722:CDS
TTTGTTACCACCACAGTAGA+GGG 0.555703 4.3:-44360025 None:intergenic
TGAAATGATTATAGATGGGG+AGG 0.559711 4.3:+44359116 MS.gene03722:intron
AAGACTCGATGATAATGGAC+TGG 0.560259 4.3:+44358306 MS.gene03722:CDS
TCTGAATATGTAGTTGTCAT+GGG 0.564083 4.3:+44358261 MS.gene03722:intron
AAAGAGTCCTTTGTACATTG+TGG 0.565413 4.3:+44357528 MS.gene03722:CDS
GACATATCAGCAATGGCAGT+AGG 0.570461 4.3:+44358876 MS.gene03722:CDS
CCAAGTATCTTACTTCCCTA+AGG 0.573294 4.3:+44358931 MS.gene03722:CDS
AAGAAATTGAAACTTACACT+TGG 0.579577 4.3:+44357616 MS.gene03722:CDS
TGGAAGATTCTTCAAAGCCA+TGG 0.593562 4.3:+44356637 MS.gene03722:CDS
GGCTTCAAGCTGGTATCCAA+AGG 0.594499 4.3:-44356947 None:intergenic
ATTTGTTACCACCACAGTAG+AGG 0.594837 4.3:-44360026 None:intergenic
GCCAATGTTACTATCTACAA+TGG 0.596962 4.3:+44359346 MS.gene03722:CDS
CCAATAATTCTATGGTTGCA+GGG 0.597010 4.3:+44356660 MS.gene03722:CDS
GTGTGGCATTAGGAGACAGT+TGG 0.599447 4.3:+44358022 MS.gene03722:CDS
AGACTTACGTGACATTCTCA+GGG 0.602881 4.3:-44359034 None:intergenic
GGTTGATCAGCTACTGACCA+AGG 0.605656 4.3:+44359321 MS.gene03722:intron
CTTGAGACGTCTTTGAGGAG+AGG 0.606726 4.3:-44358286 None:intergenic
TATGAAGCCAAGAATAGATG+AGG 0.609873 4.3:+44359178 MS.gene03722:CDS
ATAACATAGGACAATCCAGT+TGG 0.618495 4.3:+44357391 MS.gene03722:intron
GACTCTGCCACAATGTACAA+AGG 0.618531 4.3:-44357535 None:intergenic
ATCTTACTTCCCTAAGGACA+AGG 0.618834 4.3:+44358937 MS.gene03722:CDS
TGGTTCAGACATATCAGCAA+TGG 0.623686 4.3:+44358869 MS.gene03722:CDS
ATTGCTCACGCCAAACTCAA+CGG 0.628781 4.3:-44360718 None:intergenic
CCAAGTTTATCATCACCACC+AGG 0.637624 4.3:-44358969 None:intergenic
AAATAATTTAATCAACAATG+TGG 0.638143 4.3:-44357485 None:intergenic
TTCAATAAGCAGCAACAATG+TGG 0.638580 4.3:+44358539 MS.gene03722:CDS
TGGAGATCAGTATTGCTCAG+AGG 0.661077 4.3:+44358445 MS.gene03722:intron
GAAATGATTATAGATGGGGA+GGG 0.663461 4.3:+44359117 MS.gene03722:intron
ACAAGGTCTTCTTCTCCTGG+TGG 0.673235 4.3:+44358954 MS.gene03722:CDS
GGTGGTAACAAATCGACCAA+AGG 0.673311 4.3:+44360036 MS.gene03722:CDS
GACAGAACACCCCTCTACTG+TGG 0.677504 4.3:+44360015 MS.gene03722:CDS
AGAACACCCCTCTACTGTGG+TGG 0.678028 4.3:+44360018 MS.gene03722:CDS
TTGTTACCACCACAGTAGAG+GGG 0.680201 4.3:-44360024 None:intergenic
GTTGATCAGCTACTGACCAA+GGG 0.682526 4.3:+44359322 MS.gene03722:CDS
CAACAATGTGGTCAAATCTG+TGG 0.683124 4.3:-44357473 None:intergenic
CTGAATATGTAGTTGTCATG+GGG 0.684612 4.3:+44358262 MS.gene03722:intron
TTATAAAAGTCCATACAGAG+TGG 0.699820 4.3:+44356617 MS.gene03722:CDS
ATTGTGGCAGAGTCTTATGG+TGG 0.700649 4.3:+44357544 MS.gene03722:CDS
ATAATTCTATGGTTGCAGGG+TGG 0.754612 4.3:+44356663 MS.gene03722:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGTTTAATACAAAA+GGG - chr4.3:44357947-44357966 None:intergenic 10.0%
!! TAAAAATAGTTTAATACAAA+AGG - chr4.3:44357948-44357967 None:intergenic 10.0%
!!! ATTTTTTTTATTTTTTTTCG+AGG + chr4.3:44359231-44359250 MS.gene03722:intron 10.0%
!!! TATTTGAATTTTAGTTTTTA+AGG + chr4.3:44360300-44360319 MS.gene03722:intron 10.0%
!!! TTAATTTTAAATTACAGTTA+TGG + chr4.3:44358117-44358136 MS.gene03722:intron 10.0%
!!! TTATATATTTATAGTTGATA+TGG - chr4.3:44360228-44360247 None:intergenic 10.0%
!!! TTTTATTTTAATTATAAGCT+TGG + chr4.3:44359258-44359277 MS.gene03722:intron 10.0%
!!! TTTTTTTTATTTTTTTTCGA+GGG + chr4.3:44359232-44359251 MS.gene03722:intron 10.0%
!! AAATAATTTAATCAACAATG+TGG - chr4.3:44357488-44357507 None:intergenic 15.0%
!! ACTTATATGAATTAAATACA+AGG - chr4.3:44357099-44357118 None:intergenic 15.0%
!! ATAAATGAAATGATTATAGA+TGG + chr4.3:44359111-44359130 MS.gene03722:intron 15.0%
!! CTAGTTACTATTAATAAATT+TGG + chr4.3:44360363-44360382 MS.gene03722:intron 15.0%
!! GTTCAATAAAATAAACTTAT+TGG - chr4.3:44358090-44358109 None:intergenic 15.0%
!! TAAATGAAATGATTATAGAT+GGG + chr4.3:44359112-44359131 MS.gene03722:intron 15.0%
!! TATTAATAAATTTGGAAATG+TGG + chr4.3:44360371-44360390 MS.gene03722:intron 15.0%
!!! AAAATCATACTTTTTCTTTA+AGG - chr4.3:44357981-44358000 None:intergenic 15.0%
!!! AGATAAAATTCTCTTATTTT+TGG + chr4.3:44360629-44360648 MS.gene03722:intron 15.0%
!!! ATCAAATATTTTTAGTGATT+TGG - chr4.3:44357165-44357184 None:intergenic 15.0%
!!! CTTAAATTTTTTGTTGAAAT+AGG + chr4.3:44358815-44358834 MS.gene03722:intron 15.0%
!!! GAATTTTCTCAAATTATTAA+TGG + chr4.3:44358728-44358747 MS.gene03722:intron 15.0%
!!! TAGTTCAATTAGTTTAATTA+CGG - chr4.3:44359857-44359876 None:intergenic 15.0%
!!! TTAAAGAAAAAGTATGATTT+TGG + chr4.3:44357980-44357999 MS.gene03722:intron 15.0%
!!! TTAATAATTTTAACCTTTAC+AGG + chr4.3:44359300-44359319 MS.gene03722:intron 15.0%
!! AAAGCCAATGTTATAAAAAT+CGG + chr4.3:44359726-44359745 MS.gene03722:intron 20.0%
!! AAAGTGTGTTTGATTATTAT+AGG + chr4.3:44359599-44359618 MS.gene03722:intron 20.0%
!! AAATGAAATGATTATAGATG+GGG + chr4.3:44359113-44359132 MS.gene03722:intron 20.0%
!! AGTTTAATTACGGTTTAATT+TGG - chr4.3:44359847-44359866 None:intergenic 20.0%
!! ATAAATTCTGACTAATGAAT+GGG + chr4.3:44357877-44357896 MS.gene03722:intron 20.0%
!! ATATAATTCAGTGTAATCAT+AGG + chr4.3:44357792-44357811 MS.gene03722:intron 20.0%
!! CATTGATATCGATAATAATA+TGG + chr4.3:44356711-44356730 MS.gene03722:intron 20.0%
!! CTCACAAAAAATATAGAATT+TGG - chr4.3:44360500-44360519 None:intergenic 20.0%
!! GAAAATGAATAAGATACTAT+TGG + chr4.3:44359418-44359437 MS.gene03722:intron 20.0%
!! GATTAATAAAAGAAAGATCA+AGG + chr4.3:44358898-44358917 MS.gene03722:CDS 20.0%
!! TAAAATAACTATGACGATTA+CGG - chr4.3:44357244-44357263 None:intergenic 20.0%
!! TATTAATGGTGTTTAAGTAT+CGG + chr4.3:44358742-44358761 MS.gene03722:intron 20.0%
!! TCATACATAAACACATAAAA+TGG - chr4.3:44356857-44356876 None:intergenic 20.0%
!! TGAAAGAGTAAAACTATTTA+TGG + chr4.3:44357294-44357313 MS.gene03722:intron 20.0%
!! TTAGTTTCGATAATAATAAG+AGG + chr4.3:44359396-44359415 MS.gene03722:intron 20.0%
!!! ATAGGATTTTTACAATTTCT+TGG + chr4.3:44358833-44358852 MS.gene03722:intron 20.0%
!!! ATTCTTATCTTCTTTTTTCA+CGG + chr4.3:44360269-44360288 MS.gene03722:intron 20.0%
!!! ATTGGTCTTATTTCAATTTA+TGG + chr4.3:44357689-44357708 MS.gene03722:intron 20.0%
!!! GTAGTACTATAATTTTAATG+TGG - chr4.3:44360682-44360701 None:intergenic 20.0%
! AAAATTTCTACTTGAGAAGA+TGG - chr4.3:44358358-44358377 None:intergenic 25.0%
! AAATTTCTACTTGAGAAGAT+GGG - chr4.3:44358357-44358376 None:intergenic 25.0%
! AAGAAATTGAAACTTACACT+TGG + chr4.3:44357616-44357635 MS.gene03722:CDS 25.0%
! AAGATAAGTGAAAACTTCAT+TGG - chr4.3:44359147-44359166 None:intergenic 25.0%
! AATTCAACTTGGTTGTTAAA+AGG + chr4.3:44356974-44356993 MS.gene03722:CDS 25.0%
! ACAAAAACCTACAATTCTAT+TGG + chr4.3:44360073-44360092 MS.gene03722:CDS 25.0%
! ACAAAAGAGAACTCATTTAT+GGG - chr4.3:44358590-44358609 None:intergenic 25.0%
! ACCTTTATATTGTGGTAAAA+TGG + chr4.3:44358151-44358170 MS.gene03722:intron 25.0%
! CATAAATTCTGACTAATGAA+TGG + chr4.3:44357876-44357895 MS.gene03722:intron 25.0%
! TACAAAAGAGAACTCATTTA+TGG - chr4.3:44358591-44358610 None:intergenic 25.0%
! TGGACTTAATATATACATTG+CGG - chr4.3:44358619-44358638 None:intergenic 25.0%
! TTGATGTCATATGATAACAT+AGG + chr4.3:44357378-44357397 MS.gene03722:intron 25.0%
!! TCCATTTTACCACAATATAA+AGG - chr4.3:44358155-44358174 None:intergenic 25.0%
!! TGAACAAAACTTTTCATTCA+TGG - chr4.3:44359073-44359092 None:intergenic 25.0%
!! TGATCCGATTTTTATAACAT+TGG - chr4.3:44359733-44359752 None:intergenic 25.0%
!! TTTATCTAACAAACCCATTT+TGG + chr4.3:44358425-44358444 MS.gene03722:intron 25.0%
!!! AAATCTTGTTTTTGACTATG+TGG + chr4.3:44357336-44357355 MS.gene03722:intron 25.0%
!!! ATAGTTGTTTTAGTGATGAT+TGG - chr4.3:44360131-44360150 None:intergenic 25.0%
!!! ATATTTTTTGTGAGCAAGAA+GGG + chr4.3:44360506-44360525 MS.gene03722:intron 25.0%
!!! CTTTAATGTTTTTTTTCCGA+AGG - chr4.3:44359583-44359602 None:intergenic 25.0%
!!! TATATTTTTTGTGAGCAAGA+AGG + chr4.3:44360505-44360524 MS.gene03722:intron 25.0%
!!! TGGTAAACTTTTTCTTATGT+AGG + chr4.3:44358000-44358019 MS.gene03722:intron 25.0%
!!! TTTTTATAACATTGGCTTTG+AGG - chr4.3:44359725-44359744 None:intergenic 25.0%
AAATTGAAACTTACACTTGG+AGG + chr4.3:44357619-44357638 MS.gene03722:CDS 30.0%
ACTTTAGATCAAAGTGTATC+TGG + chr4.3:44358659-44358678 MS.gene03722:intron 30.0%
ATCTGAATATGTAGTTGTCA+TGG + chr4.3:44358260-44358279 MS.gene03722:intron 30.0%
ATCTTCTTTCTTTATTCCGT+AGG + chr4.3:44359962-44359981 MS.gene03722:intron 30.0%
CAAGAATCCAATAGAATTGT+AGG - chr4.3:44360083-44360102 None:intergenic 30.0%
CTACAATTCTATTGGATTCT+TGG + chr4.3:44360081-44360100 MS.gene03722:CDS 30.0%
GTATGACTTGAAAAATCCTT+TGG - chr4.3:44360055-44360074 None:intergenic 30.0%
TAAAAGAAAGATCAAGGAAG+AGG + chr4.3:44358904-44358923 MS.gene03722:CDS 30.0%
TCCATTGTAGATAGTAACAT+TGG - chr4.3:44359350-44359369 None:intergenic 30.0%
TCTGAATATGTAGTTGTCAT+GGG + chr4.3:44358261-44358280 MS.gene03722:intron 30.0%
TTACAATTTCTTGGTCGATT+CGG + chr4.3:44358842-44358861 MS.gene03722:CDS 30.0%
TTACTTACCACAAAATCTTC+TGG - chr4.3:44358054-44358073 None:intergenic 30.0%
TTATAAAAGTCCATACAGAG+TGG + chr4.3:44356617-44356636 MS.gene03722:CDS 30.0%
! AGATTTTCATGTCATTGGAT+AGG + chr4.3:44356883-44356902 MS.gene03722:intron 30.0%
! ATCTAATTTGTGCTACCAAA+GGG + chr4.3:44359625-44359644 MS.gene03722:CDS 30.0%
! CATTAAAGTGTGTTTTCCTT+CGG + chr4.3:44359564-44359583 MS.gene03722:intron 30.0%
! CTTTTAACAGCTCATTCATA+TGG + chr4.3:44360456-44360475 MS.gene03722:intron 30.0%
! GAAGTTTTCACTTATCTTGA+AGG + chr4.3:44359149-44359168 MS.gene03722:CDS 30.0%
! GAATGAGATTTTCATGTCAT+TGG + chr4.3:44356878-44356897 MS.gene03722:intron 30.0%
! GATTTTCATGTCATTGGATA+GGG + chr4.3:44356884-44356903 MS.gene03722:intron 30.0%
!! AACTTTTTCTTATGTAGGTG+TGG + chr4.3:44358005-44358024 MS.gene03722:intron 30.0%
!! ATTGGAAATTTTGAAGAGGT+TGG + chr4.3:44356923-44356942 MS.gene03722:CDS 30.0%
!! CATTGATTCAATATTCGATC+CGG + chr4.3:44359896-44359915 MS.gene03722:intron 30.0%
!! TAACTTGTTCTTCTTTGTGT+TGG + chr4.3:44357906-44357925 MS.gene03722:intron 30.0%
!!! AAAAGCACTTTTCATGATGA+TGG - chr4.3:44357040-44357059 None:intergenic 30.0%
AAAAATCGGATCAGACTAGT+CGG + chr4.3:44359740-44359759 MS.gene03722:intron 35.0%
AAACTTGGCGCTTTACTAAA+TGG + chr4.3:44358984-44359003 MS.gene03722:CDS 35.0%
AAAGAGTCCTTTGTACATTG+TGG + chr4.3:44357528-44357547 MS.gene03722:CDS 35.0%
AAATGTGGAAGATCTTTAGG+GGG + chr4.3:44360386-44360405 MS.gene03722:intron 35.0%
AACCATAGAATTATTGGCCA+TGG - chr4.3:44356657-44356676 None:intergenic 35.0%
AAGGGCTAAAAAGTTTCTTG+GGG + chr4.3:44359989-44360008 MS.gene03722:CDS 35.0%
ACCAATCAAGTAGTACTTAC+AGG - chr4.3:44356690-44356709 None:intergenic 35.0%
AGCAATACTGATCTCCAAAA+TGG - chr4.3:44358442-44358461 None:intergenic 35.0%
ATAACATAGGACAATCCAGT+TGG + chr4.3:44357391-44357410 MS.gene03722:intron 35.0%
ATCAAGAAGCAACTTGAAGA+TGG + chr4.3:44358468-44358487 MS.gene03722:CDS 35.0%
ATTTCTGTGTTGTGTTGTGT+CGG - chr4.3:44358688-44358707 None:intergenic 35.0%
CCAATAATTCTATGGTTGCA+GGG + chr4.3:44356660-44356679 MS.gene03722:CDS 35.0%
CCAATCAAGTAGTACTTACA+GGG - chr4.3:44356689-44356708 None:intergenic 35.0%
CTGAATATGTAGTTGTCATG+GGG + chr4.3:44358262-44358281 MS.gene03722:intron 35.0%
CTTCTTACCTCATCTATTCT+TGG - chr4.3:44359188-44359207 None:intergenic 35.0%
GAAATGATTATAGATGGGGA+GGG + chr4.3:44359117-44359136 MS.gene03722:intron 35.0%
GAAATGTGGAAGATCTTTAG+GGG + chr4.3:44360385-44360404 MS.gene03722:intron 35.0%
GAAGGGCTAAAAAGTTTCTT+GGG + chr4.3:44359988-44360007 MS.gene03722:CDS 35.0%
GCAATACTGATCTCCAAAAT+GGG - chr4.3:44358441-44358460 None:intergenic 35.0%
GCCAATGTTACTATCTACAA+TGG + chr4.3:44359346-44359365 MS.gene03722:CDS 35.0%
GGAAATGTGGAAGATCTTTA+GGG + chr4.3:44360384-44360403 MS.gene03722:intron 35.0%
TATGAAGCCAAGAATAGATG+AGG + chr4.3:44359178-44359197 MS.gene03722:CDS 35.0%
TCAGATTTCAGATCTCAGAT+TGG + chr4.3:44357671-44357690 MS.gene03722:intron 35.0%
TCTTTCTTTATTCCGTAGGT+GGG + chr4.3:44359966-44359985 MS.gene03722:intron 35.0%
TGAAATGATTATAGATGGGG+AGG + chr4.3:44359116-44359135 MS.gene03722:intron 35.0%
TGGAAATGTGGAAGATCTTT+AGG + chr4.3:44360383-44360402 MS.gene03722:intron 35.0%
TTCAATAAGCAGCAACAATG+TGG + chr4.3:44358539-44358558 MS.gene03722:CDS 35.0%
TTCTTTCTTTATTCCGTAGG+TGG + chr4.3:44359965-44359984 MS.gene03722:intron 35.0%
TTTAAATTGCCGTCCGTAAA+CGG - chr4.3:44358209-44358228 None:intergenic 35.0%
! AAAAGGAGATCTCTTGTTTG+TGG + chr4.3:44356991-44357010 MS.gene03722:CDS 35.0%
! AACAACCAAGTTGAATTCCT+TGG - chr4.3:44356971-44356990 None:intergenic 35.0%
! GATCTAATTTGTGCTACCAA+AGG + chr4.3:44359624-44359643 MS.gene03722:CDS 35.0%
! GATCTCTTGTTTGTGGTAAT+TGG + chr4.3:44356998-44357017 MS.gene03722:intron 35.0%
! TACAATTTCTTGGTCGATTC+GGG + chr4.3:44358843-44358862 MS.gene03722:CDS 35.0%
! TACACTTTGATCTAAAGTGC+TGG - chr4.3:44358657-44358676 None:intergenic 35.0%
! TACTATTGGACATGTTGACT+TGG + chr4.3:44359432-44359451 MS.gene03722:intron 35.0%
! TGAGATCTGAAATCTGAAGA+TGG - chr4.3:44357668-44357687 None:intergenic 35.0%
! TGTAATCATAGGTGTTGTGT+CGG + chr4.3:44357803-44357822 MS.gene03722:intron 35.0%
! TTAATGATGCAACTGACTCA+TGG + chr4.3:44358496-44358515 MS.gene03722:CDS 35.0%
!! ATGGACTGGAAAAATCAAAC+AGG + chr4.3:44358320-44358339 MS.gene03722:CDS 35.0%
!! TGGGATTGGAAATTTTGAAG+AGG + chr4.3:44356919-44356938 MS.gene03722:CDS 35.0%
!! TGTTCTTCTTTGTGTTGGTT+AGG + chr4.3:44357911-44357930 MS.gene03722:intron 35.0%
!! TTGTGTTGGTTAGGAAATGA+TGG + chr4.3:44357920-44357939 MS.gene03722:intron 35.0%
AAACTGTATCCTGTTCCAAC+TGG - chr4.3:44357409-44357428 None:intergenic 40.0%
ACTATGACGATTACGGTGAA+CGG - chr4.3:44357237-44357256 None:intergenic 40.0%
AGAAGAAGACCTTGTCCTTA+GGG - chr4.3:44358949-44358968 None:intergenic 40.0%
AGACTTACGTGACATTCTCA+GGG - chr4.3:44359037-44359056 None:intergenic 40.0%
AGCCATGGCCAATAATTCTA+TGG + chr4.3:44356652-44356671 MS.gene03722:CDS 40.0%
AGTAGCTGATCAACCTGTAA+AGG - chr4.3:44359316-44359335 None:intergenic 40.0%
ATAATTCTATGGTTGCAGGG+TGG + chr4.3:44356663-44356682 MS.gene03722:CDS 40.0%
ATATGGTGTGTAACGTGTGT+TGG + chr4.3:44356728-44356747 MS.gene03722:intron 40.0%
ATCTTACTTCCCTAAGGACA+AGG + chr4.3:44358937-44358956 MS.gene03722:CDS 40.0%
CAACAATGTGGTCAAATCTG+TGG - chr4.3:44357476-44357495 None:intergenic 40.0%
CCAAGTATCTTACTTCCCTA+AGG + chr4.3:44358931-44358950 MS.gene03722:CDS 40.0%
CCCTGCAACCATAGAATTAT+TGG - chr4.3:44356663-44356682 None:intergenic 40.0%
CCCTGTAAGTACTACTTGAT+TGG + chr4.3:44356686-44356705 MS.gene03722:intron 40.0%
CCTTAGGGAAGTAAGATACT+TGG - chr4.3:44358934-44358953 None:intergenic 40.0%
CGCTGCAAACCTTTATATTG+TGG + chr4.3:44358143-44358162 MS.gene03722:intron 40.0%
GAAGAATCTTCCACTCTGTA+TGG - chr4.3:44356630-44356649 None:intergenic 40.0%
GCCAATAATTCTATGGTTGC+AGG + chr4.3:44356659-44356678 MS.gene03722:CDS 40.0%
GCTCAAATTATTATCCGCGT+CGG - chr4.3:44357767-44357786 None:intergenic 40.0%
GGAAGGGCTAAAAAGTTTCT+TGG + chr4.3:44359987-44360006 MS.gene03722:CDS 40.0%
GTAGTGTTTACCGTTGAGTT+TGG + chr4.3:44360708-44360727 MS.gene03722:intron 40.0%
GTCTCAAGACTCGATGATAA+TGG + chr4.3:44358301-44358320 MS.gene03722:CDS 40.0%
TACATTGTGGCAGAGTCTTA+TGG + chr4.3:44357541-44357560 MS.gene03722:CDS 40.0%
TAGACTTACGTGACATTCTC+AGG - chr4.3:44359038-44359057 None:intergenic 40.0%
TCTTATGTAGGTGTGGCATT+AGG + chr4.3:44358012-44358031 MS.gene03722:intron 40.0%
TGAAGCCAAGGAATTCAACT+TGG + chr4.3:44356963-44356982 MS.gene03722:CDS 40.0%
TGGAAGATTCTTCAAAGCCA+TGG + chr4.3:44356637-44356656 MS.gene03722:CDS 40.0%
TGGTTCAGACATATCAGCAA+TGG + chr4.3:44358869-44358888 MS.gene03722:CDS 40.0%
TTCTATTGGATTCTTGGAGC+TGG + chr4.3:44360087-44360106 MS.gene03722:CDS 40.0%
TTTGTTACCACCACAGTAGA+GGG - chr4.3:44360028-44360047 None:intergenic 40.0%
! AATGTGGAAGATCTTTAGGG+GGG + chr4.3:44360387-44360406 MS.gene03722:intron 40.0%
! ACATCTAATCAGAAGCGTGT+CGG + chr4.3:44356784-44356803 MS.gene03722:intron 40.0%
! ATTTGTTACCACCACAGTAG+AGG - chr4.3:44360029-44360048 None:intergenic 40.0%
! GATCTCACCAGAAGATTTTG+TGG + chr4.3:44358044-44358063 MS.gene03722:CDS 40.0%
! GGGGCTTCATTGATTAAATC+TGG + chr4.3:44356805-44356824 MS.gene03722:intron 40.0%
! TGGAACAGGATACAGTTTTG+TGG + chr4.3:44357411-44357430 MS.gene03722:CDS 40.0%
! TGTAGTTGCAATGCCGTTTA+CGG + chr4.3:44358193-44358212 MS.gene03722:intron 40.0%
! TTTTTGTGAGCAAGAAGGGT+CGG + chr4.3:44360510-44360529 MS.gene03722:intron 40.0%
!! AACAGGATACAGTTTTGTGG+AGG + chr4.3:44357414-44357433 MS.gene03722:CDS 40.0%
!! AAGACTCGATGATAATGGAC+TGG + chr4.3:44358306-44358325 MS.gene03722:CDS 40.0%
!! CCAATGTTGACTTGTCTATC+CGG - chr4.3:44359918-44359937 None:intergenic 40.0%
!! TTTGATCTAAAGTGCTGGTG+CGG - chr4.3:44358652-44358671 None:intergenic 40.0%
!! TTTTGAAGAGGTTGGACCTT+TGG + chr4.3:44356931-44356950 MS.gene03722:CDS 40.0%
ACCTTCATTTGCGCTCAATG+AGG + chr4.3:44360414-44360433 MS.gene03722:intron 45.0%
ATATCCATGTCTGTGCGTCA+AGG + chr4.3:44358776-44358795 MS.gene03722:intron 45.0%
CCAAGTTTATCATCACCACC+AGG - chr4.3:44358972-44358991 None:intergenic 45.0%
CCGGATAGACAAGTCAACAT+TGG + chr4.3:44359915-44359934 MS.gene03722:intron 45.0%
CGCTCAATGAGGATCATCTT+AGG + chr4.3:44360425-44360444 MS.gene03722:intron 45.0%
CTTTATTCCGTAGGTGGGAA+GGG + chr4.3:44359971-44359990 MS.gene03722:intron 45.0%
GACATATCAGCAATGGCAGT+AGG + chr4.3:44358876-44358895 MS.gene03722:CDS 45.0%
GACTCTGCCACAATGTACAA+AGG - chr4.3:44357538-44357557 None:intergenic 45.0%
GAGAAGAAGACCTTGTCCTT+AGG - chr4.3:44358950-44358969 None:intergenic 45.0%
GATTAGATGTGTCCTGGTGT+CGG - chr4.3:44356774-44356793 None:intergenic 45.0%
GCTTCTGATTAGATGTGTCC+TGG - chr4.3:44356780-44356799 None:intergenic 45.0%
GGTGGTAACAAATCGACCAA+AGG + chr4.3:44360036-44360055 MS.gene03722:CDS 45.0%
GTTGATCAGCTACTGACCAA+GGG + chr4.3:44359322-44359341 MS.gene03722:CDS 45.0%
TACCAAAGGGACTGAAGCTT+GGG + chr4.3:44359638-44359657 MS.gene03722:CDS 45.0%
TAGGACAATCCAGTTGGAAC+AGG + chr4.3:44357397-44357416 MS.gene03722:intron 45.0%
TATGAAGCACAGACACTCCT+CGG - chr4.3:44357860-44357879 None:intergenic 45.0%
TCCTCATTGAGCGCAAATGA+AGG - chr4.3:44360418-44360437 None:intergenic 45.0%
TCTTTATTCCGTAGGTGGGA+AGG + chr4.3:44359970-44359989 MS.gene03722:intron 45.0%
TGAATTCCTTGGCTTCAAGC+TGG - chr4.3:44356960-44356979 None:intergenic 45.0%
TGGAGATCAGTATTGCTCAG+AGG + chr4.3:44358445-44358464 MS.gene03722:intron 45.0%
TTGTTACCACCACAGTAGAG+GGG - chr4.3:44360027-44360046 None:intergenic 45.0%
! ATCTAATCAGAAGCGTGTCG+GGG + chr4.3:44356786-44356805 MS.gene03722:intron 45.0%
! ATTGTGGCAGAGTCTTATGG+TGG + chr4.3:44357544-44357563 MS.gene03722:CDS 45.0%
! CATCTAATCAGAAGCGTGTC+GGG + chr4.3:44356785-44356804 MS.gene03722:intron 45.0%
! CCTGGTGGTGATGATAAACT+TGG + chr4.3:44358969-44358988 MS.gene03722:CDS 45.0%
! TATTGAAAGCGCACAGACAC+CGG + chr4.3:44357713-44357732 MS.gene03722:intron 45.0%
!! GATAGTAACATTGGCTCCCT+TGG - chr4.3:44359341-44359360 None:intergenic 45.0%
!! GGCAAATTTGCTGTCACTCT+TGG + chr4.3:44357565-44357584 MS.gene03722:CDS 45.0%
!! TTTTTAGCCCTTCCCACCTA+CGG - chr4.3:44359981-44360000 None:intergenic 45.0%
AACCCAAGCTTCAGTCCCTT+TGG - chr4.3:44359643-44359662 None:intergenic 50.0%
AAGGGACTGAAGCTTGGGTT+AGG + chr4.3:44359643-44359662 MS.gene03722:CDS 50.0%
AAGGGTCGGTCTAACACAAG+GGG + chr4.3:44360524-44360543 MS.gene03722:intron 50.0%
ACAAGGTCTTCTTCTCCTGG+TGG + chr4.3:44358954-44358973 MS.gene03722:CDS 50.0%
AGAAGGGTCGGTCTAACACA+AGG + chr4.3:44360522-44360541 MS.gene03722:intron 50.0%
AGGACAAGGTCTTCTTCTCC+TGG + chr4.3:44358951-44358970 MS.gene03722:CDS 50.0%
CGAGTCTTGAGACGTCTTTG+AGG - chr4.3:44358294-44358313 None:intergenic 50.0%
CTACCAAAGGGACTGAAGCT+TGG + chr4.3:44359637-44359656 MS.gene03722:CDS 50.0%
GAAGGGTCGGTCTAACACAA+GGG + chr4.3:44360523-44360542 MS.gene03722:intron 50.0%
GGCTTCAAGCTGGTATCCAA+AGG - chr4.3:44356950-44356969 None:intergenic 50.0%
GGTTGATCAGCTACTGACCA+AGG + chr4.3:44359321-44359340 MS.gene03722:intron 50.0%
GTGTGGCATTAGGAGACAGT+TGG + chr4.3:44358022-44358041 MS.gene03722:CDS 50.0%
TGGATACCAGCTTGAAGCCA+AGG + chr4.3:44356951-44356970 MS.gene03722:CDS 50.0%
! CTTGAGACGTCTTTGAGGAG+AGG - chr4.3:44358289-44358308 None:intergenic 50.0%
! GATAGGGTGCTTCAGGTGTT+GGG + chr4.3:44356900-44356919 MS.gene03722:intron 50.0%
! GTCATTGGATAGGGTGCTTC+AGG + chr4.3:44356893-44356912 MS.gene03722:intron 50.0%
! GTTGCAATGCCGTTTACGGA+CGG + chr4.3:44358197-44358216 MS.gene03722:intron 50.0%
! TCCTGGTGTCGGATACACAT+CGG - chr4.3:44356763-44356782 None:intergenic 50.0%
!! TTCTTGGTCGATTCGGGAAG+TGG + chr4.3:44358849-44358868 MS.gene03722:CDS 50.0%
ACCGATGTGTATCCGACACC+AGG + chr4.3:44356759-44356778 MS.gene03722:intron 55.0%
AGAACACCCCTCTACTGTGG+TGG + chr4.3:44360018-44360037 MS.gene03722:CDS 55.0%
GACAGAACACCCCTCTACTG+TGG + chr4.3:44360015-44360034 MS.gene03722:CDS 55.0%
GATTAGGTGTGTCCCGGTGT+CGG - chr4.3:44357838-44357857 None:intergenic 55.0%
GCACAGACACTCCTCGGATT+AGG - chr4.3:44357854-44357873 None:intergenic 55.0%
! GGATAGGGTGCTTCAGGTGT+TGG + chr4.3:44356899-44356918 MS.gene03722:intron 55.0%
! GTAGCCTTGACGCACAGACA+TGG - chr4.3:44358783-44358802 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCC+CGG - chr4.3:44357844-44357863 None:intergenic 55.0%
!! GGTGCTTCAGGTGTTGGGAT+TGG + chr4.3:44356905-44356924 MS.gene03722:CDS 55.0%
ACCGGGACACACCTAATCCG+AGG + chr4.3:44357840-44357859 MS.gene03722:intron 60.0%
CACAGACACCGGACACGACA+CGG + chr4.3:44357724-44357743 MS.gene03722:intron 60.0%
CTGACACTAACACGCCGACG+CGG + chr4.3:44357750-44357769 MS.gene03722:intron 60.0%
GCTGGTGCGGAGCAATAGCA+TGG - chr4.3:44358639-44358658 None:intergenic 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr4.3:44357735-44357754 None:intergenic 60.0%
TCGGTACACGTGTCCGACAC+CGG + chr4.3:44357822-44357841 MS.gene03722:intron 60.0%
CGGTACACGTGTCCGACACC+GGG + chr4.3:44357823-44357842 MS.gene03722:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 44356603 44360735 44356603 ID=MS.gene03722
chr4.3 mRNA 44356603 44360735 44356603 ID=MS.gene03722.t1;Parent=MS.gene03722
chr4.3 exon 44356603 44356689 44356603 ID=MS.gene03722.t1.exon1;Parent=MS.gene03722.t1
chr4.3 CDS 44356603 44356689 44356603 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44356905 44357012 44356905 ID=MS.gene03722.t1.exon2;Parent=MS.gene03722.t1
chr4.3 CDS 44356905 44357012 44356905 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44357400 44357640 44357400 ID=MS.gene03722.t1.exon3;Parent=MS.gene03722.t1
chr4.3 CDS 44357400 44357640 44357400 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44358022 44358065 44358022 ID=MS.gene03722.t1.exon4;Parent=MS.gene03722.t1
chr4.3 CDS 44358022 44358065 44358022 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44358274 44358341 44358274 ID=MS.gene03722.t1.exon5;Parent=MS.gene03722.t1
chr4.3 CDS 44358274 44358341 44358274 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44358455 44358560 44358455 ID=MS.gene03722.t1.exon6;Parent=MS.gene03722.t1
chr4.3 CDS 44358455 44358560 44358455 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44358837 44359048 44358837 ID=MS.gene03722.t1.exon7;Parent=MS.gene03722.t1
chr4.3 CDS 44358837 44359048 44358837 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44359130 44359199 44359130 ID=MS.gene03722.t1.exon8;Parent=MS.gene03722.t1
chr4.3 CDS 44359130 44359199 44359130 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44359322 44359372 44359322 ID=MS.gene03722.t1.exon9;Parent=MS.gene03722.t1
chr4.3 CDS 44359322 44359372 44359322 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44359621 44359673 44359621 ID=MS.gene03722.t1.exon10;Parent=MS.gene03722.t1
chr4.3 CDS 44359621 44359673 44359621 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44359984 44360116 44359984 ID=MS.gene03722.t1.exon11;Parent=MS.gene03722.t1
chr4.3 CDS 44359984 44360116 44359984 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
chr4.3 exon 44360712 44360735 44360712 ID=MS.gene03722.t1.exon12;Parent=MS.gene03722.t1
chr4.3 CDS 44360712 44360735 44360712 ID=cds.MS.gene03722.t1;Parent=MS.gene03722.t1
Gene Sequence

>MS.gene03722

ATGTTTTGGTGGCATTATAAAAGTCCATACAGAGTGGAAGATTCTTCAAAGCCATGGCCAATAATTCTATGGTTGCAGGGTGGCCCTGTAAGTACTACTTGATTGGTTCATTGATATCGATAATAATATGGTGTGTAACGTGTGTTGGTGTCTGACACCGATGTGTATCCGACACCAGGACACATCTAATCAGAAGCGTGTCGGGGCTTCATTGATTAAATCTGGATAATTCTGAACAAAACAACAACTATCCATTTTATGTGTTTATGTATGATGAATGAGATTTTCATGTCATTGGATAGGGTGCTTCAGGTGTTGGGATTGGAAATTTTGAAGAGGTTGGACCTTTGGATACCAGCTTGAAGCCAAGGAATTCAACTTGGTTGTTAAAAGGAGATCTCTTGTTTGTGGTAATTGGTCATGTCACAGCTCATCCATCATCATGAAAAGTGCTTTTTTATTTCTGTAGCTTTTGCTTTTAGACTTTTTGTTTCCTTGTATTTAATTCATATAAGTTGTGAGTGTAAAGATTTTTTACATCGTCAATCAATTTTAATCGCCAAATCACTAAAAATATTTGATTTTAATCATAACTATCTCTAAAGTCACGTGTAAATATTTTTTACATTGTCCGTTCACCGTAATCGTCATAGTTATTTTAAAGTCAAAGATATGATTTATTGTGATTAGTTGAAAGAGTAAAACTATTTATGGTGACAGTGCATCAAAATTAAAATCTTGTTTTTGACTATGTGGTTCTGATCAATCAATGCTTTTGATGTCATATGATAACATAGGACAATCCAGTTGGAACAGGATACAGTTTTGTGGAGGATGAGAAACTTTTTGTGAAAACAGATGATGAAGCAGCCACAGATTTGACCACATTGTTGATTAAATTATTTAATAATGATGAAAAACTTCAAAAGAGTCCTTTGTACATTGTGGCAGAGTCTTATGGTGGCAAATTTGCTGTCACTCTTGGATTATCTGCTCTTAAAGCTATTGAAGACAAGAAATTGAAACTTACACTTGGAGGTGAGAATCTTCTCTTGAAATGCACCATCTTCAGATTTCAGATCTCAGATTGGTCTTATTTCAATTTATGGTTATTGAAAGCGCACAGACACCGGACACGACACGGACACTGACACTAACACGCCGACGCGGATAATAATTTGAGCAAATGATATAATTCAGTGTAATCATAGGTGTTGTGTCGGTACACGTGTCCGACACCGGGACACACCTAATCCGAGGAGTGTCTGTGCTTCATAAATTCTGACTAATGAATGGGATTAGTTAACTTGTTCTTCTTTGTGTTGGTTAGGAAATGATGGACCCTTTTGTATTAAACTATTTTTAGAACATAATACCTTAAAGAAAAAGTATGATTTTGGTAAACTTTTTCTTATGTAGGTGTGGCATTAGGAGACAGTTGGATCTCACCAGAAGATTTTGTGGTAAGTAATAGAATTGTTATACCAATAAGTTTATTTTATTGAACGATTGTTTTAATTTTAAATTACAGTTATGGTTACGCTGCAAACCTTTATATTGTGGTAAAATGGAGACAAATGTGTCTGTAATTGTAGTTGCAATGCCGTTTACGGACGGCAATTTAAAACTTTTTGACTTTTCACATATTTTATACTTGATCTGAATATGTAGTTGTCATGGGGTCCTCTCCTCAAAGACGTCTCAAGACTCGATGATAATGGACTGGAAAAATCAAACAGGTAAATATGTTTCCCATCTTCTCAAGTAGAAATTTTAGAGCAAAATGTATGAAACTATAATCTATAGAATGTTGATTTTCTCTTTTATCTAACAAACCCATTTTGGAGATCAGTATTGCTCAGAGGATCAAGAAGCAACTTGAAGATGGTAAATTTAATGATGCAACTGACTCATGGAGTGAACTTGAGAATCAGATTTCAATAAGCAGCAACAATGTGGTAATTTTCATTCTACTTCAATTTATCCCATAAATGAGTTCTCTTTTGTAATAAACCGCAATGTATATATTAAGTCCATGCTATTGCTCCGCACCAGCACTTTAGATCAAAGTGTATCTGGCGTCCGACACAACACAACACAGAAATATGATTACACTCAATTACTTGAATTTTCTCAAATTATTAATGGTGTTTAAGTATCGGTGTCGTGTCTGATATCCATGTCTGTGCGTCAAGGCTACTAAGTAAAAAGTCTTAAATTTTTTGTTGAAATAGGATTTTTACAATTTCTTGGTCGATTCGGGAAGTGGTTCAGACATATCAGCAATGGCAGTAGGATTAATAAAAGAAAGATCAAGGAAGAGGTACTCCAAGTATCTTACTTCCCTAAGGACAAGGTCTTCTTCTCCTGGTGGTGATGATAAACTTGGCGCTTTACTAAATGGTGTTATAAAGAAGAAGTTAAAAATCATCCCTGAGAATGTCACGTAAGTCTAATAATTCTTTAACCATGAATGAAAAGTTTTGTTCACAATTTCATTGCAACTAAATAAATGAAATGATTATAGATGGGGAGGGCAGTCCAATGAAGTTTTCACTTATCTTGAAGGTGATTTTATGAAGCCAAGAATAGATGAGGTAAGAAGAATTTTTTTTAAACTATAGTTTTATTTTTTTTATTTTTTTTCGAGGGAAGTTTTATTTTAATTATAAGCTTGGACATTTGATGTTATTTAATTTAATAATTTTAACCTTTACAGGTTGATCAGCTACTGACCAAGGGAGCCAATGTTACTATCTACAATGGACAAGTAAGAGTCACTTTCTACTACAGTTAGTTTCGATAATAATAAGAGGAAAATGAATAAGATACTATTGGACATGTTGACTTGGTCTTAAAGTAATAAAATTTTCTTGTTTGAGTAATGTCACAATCTTGATTTTTCTTTACGTTTAATCATATGATACTTTTATTTTATGTGTTTTTTAATATAAGAAATAACATTAAAGTGTGTTTTCCTTCGGAAAAAAAACATTAAAGTGTGTTTGATTATTATAGGTTGATCTAATTTGTGCTACCAAAGGGACTGAAGCTTGGGTTAGGAAACTCAAGTATGCAATTTTTTTTCTCTATCTCTTTACTTCATTGTTTAAAGTTAACCTCAAAGCCAATGTTATAAAAATCGGATCAGACTAGTCGGTTCAATCAGAAATTAATGTATCATTTGATTAGTTCAAACGATATTTTATAAAGTTTTTTTTTAATAGTTATTTATGAAACACCAAATTAAACCGTAATTAAACTAATTGAACTACTTAAACTATAATTCGACACATTGATTCAATATTCGATCCGGATAGACAAGTCAACATTGGTCAAAGTTTCATATTTTGTTCTCAATCTTCTTTCTTTATTCCGTAGGTGGGAAGGGCTAAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGTGGTAACAAATCGACCAAAGGATTTTTCAAGTCATACAAAAACCTACAATTCTATTGGATTCTTGGAGCTGGTCATTTTGTAAGTCTACACCAATCATCACTAAAACAACTATGCATATATTTTCATTCATTGCATCAATAGTACTAACATTGTAACATCTAATCTAACAAAATTGACTTGTCTATTCCATATCAACTATAAATATATAAGTTTAAATAAAGAAGTACTATATTCTTATCTTCTTTTTTCACGGTAGTTAGTTATTTGAATTTTAGTTTTTAAGGTATTGTTCTTTATATTTCTTTTACTTGTTTGAATTTCACTCTAGTTACTATTAATAAATTTGGAAATGTGGAAGATCTTTAGGGGGGATTTACCTTCATTTGCGCTCAATGAGGATCATCTTAGGATTTCACACTTTTAACAGCTCATTCATATGGCTATCAAACAATAAATTTCCAAATTCTATATTTTTTGTGAGCAAGAAGGGTCGGTCTAACACAAGGGGTTAGATTCTTAAAATATGACAAACTAAAGTTTGAATCACATGCAAGATATATTTATATTTAGTATCTGATATGCGTTGAATAAGATAAAATTCTCTTATTTTTGGTTTGTTTATTTTTCTTAAAAAAGAATGCCACATTAAAATTATAGTACTACATTTCTGTAGTGTTTACCGTTGAGTTTGGCGTGA
Protein sequence

>MS.gene03722.t1

MFWWHYKSPYRVEDSSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLLKGDLLFVDNPVGTGYSFVEDEKLFVKTDDEAATDLTTLLIKLFNNDEKLQKSPLYIVAESYGGKFAVTLGLSALKAIEDKKLKLTLGGVALGDSWISPEDFVLSWGPLLKDVSRLDDNGLEKSNSIAQRIKKQLEDGKFNDATDSWSELENQISISSNNVDFYNFLVDSGSGSDISAMAVGLIKERSRKRYSKYLTSLRTRSSSPGGDDKLGALLNGVIKKKLKIIPENVTWGGQSNEVFTYLEGDFMKPRIDEVDQLLTKGANVTIYNGQVDLICATKGTEAWVRKLKWEGLKSFLGKDRTPLYCGGNKSTKGFFKSYKNLQFYWILGAGHFCLPLSLA