AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23880.t1 MTR_7g021130 97.391 460 12 0 1 460 1 460 0.0 936
MS.gene23880.t1 MTR_3g498755 73.288 438 113 3 27 460 11 448 0.0 682
MS.gene23880.t1 MTR_8g099930 68.330 461 135 3 8 460 8 465 0.0 672
MS.gene23880.t1 MTR_3g434850 64.055 434 153 1 24 457 24 454 0.0 604
MS.gene23880.t1 MTR_2g449850 59.404 436 168 5 25 457 33 462 0.0 531
MS.gene23880.t1 MTR_1g040370 56.148 431 147 3 29 459 29 417 1.34e-175 498
MS.gene23880.t1 MTR_3g090150 48.165 436 213 6 31 458 34 464 1.46e-146 427
MS.gene23880.t1 MTR_1g102130 48.387 434 194 5 26 458 87 491 3.21e-144 422
MS.gene23880.t1 MTR_5g072570 45.952 457 235 8 11 457 7 461 4.05e-141 413
MS.gene23880.t1 MTR_3g090130 46.774 434 218 7 31 457 29 456 2.00e-140 411
MS.gene23880.t1 MTR_7g013790 43.243 444 226 8 29 458 34 465 6.04e-121 361
MS.gene23880.t1 MTR_0003s0560 42.694 438 230 8 24 457 67 487 4.96e-117 352
MS.gene23880.t1 MTR_3g034290 42.396 434 229 8 29 457 73 490 4.10e-116 350
MS.gene23880.t1 MTR_3g079590 43.023 430 221 11 29 453 76 486 2.34e-113 343
MS.gene23880.t1 MTR_3g079600 43.256 430 223 11 29 453 74 487 2.41e-113 343
MS.gene23880.t1 MTR_3g079570 43.023 430 220 10 29 453 77 486 2.90e-112 340
MS.gene23880.t1 MTR_4g075150 37.263 475 270 10 1 459 3 465 1.54e-110 334
MS.gene23880.t1 MTR_4g075150 37.421 473 270 10 1 459 3 463 2.23e-110 334
MS.gene23880.t1 MTR_1g095560 39.140 465 252 12 3 457 13 456 2.85e-110 333
MS.gene23880.t1 MTR_3g079620 42.212 443 222 13 29 457 76 498 3.59e-110 335
MS.gene23880.t1 MTR_3g079560 42.396 434 226 9 29 457 76 490 4.64e-110 334
MS.gene23880.t1 MTR_4g089155 41.761 443 231 9 31 457 54 485 5.84e-109 331
MS.gene23880.t1 MTR_2g012860 40.590 441 239 9 31 457 42 473 2.16e-107 327
MS.gene23880.t1 MTR_3g079630 41.950 441 218 14 29 453 76 494 9.57e-105 321
MS.gene23880.t1 MTR_1g095540 40.319 439 239 12 29 457 31 456 2.59e-104 318
MS.gene23880.t1 MTR_1g021010 41.553 438 222 11 30 458 75 487 2.84e-104 319
MS.gene23880.t1 MTR_1g095560 36.620 497 252 13 3 457 13 488 1.08e-103 318
MS.gene23880.t1 MTR_1g021020 41.284 436 227 11 29 458 76 488 1.62e-103 317
MS.gene23880.t1 MTR_2g012850 40.136 441 239 8 31 457 36 465 5.60e-103 315
MS.gene23880.t1 MTR_1g020090 40.596 436 228 12 29 458 88 498 2.91e-100 309
MS.gene23880.t1 MTR_2g063000 38.479 434 245 11 34 457 42 463 7.81e-100 307
MS.gene23880.t1 MTR_2g062980 36.207 464 275 11 3 457 11 462 1.88e-99 306
MS.gene23880.t1 MTR_2g062990 35.991 464 276 11 3 457 11 462 2.44e-99 306
MS.gene23880.t1 MTR_4g122950 38.950 457 235 11 29 457 37 477 1.09e-97 302
MS.gene23880.t1 MTR_4g122960 37.307 453 246 13 29 457 37 475 3.42e-93 290
MS.gene23880.t1 MTR_2g081620 36.403 467 259 14 1 453 17 459 3.71e-93 290
MS.gene23880.t1 MTR_3g034290 42.816 348 182 7 29 371 73 408 2.47e-90 281
MS.gene23880.t1 MTR_0075s0010 40.731 383 158 6 29 405 6 325 1.15e-87 271
MS.gene23880.t1 MTR_2g063000 33.796 432 237 11 34 457 42 432 2.70e-79 253
MS.gene23880.t1 MTR_0003s0560 47.170 265 129 4 24 285 67 323 1.42e-77 246
MS.gene23880.t1 MTR_7g051430 32.657 493 250 17 26 456 23 495 4.26e-64 215
MS.gene23880.t1 MTR_8g011350 30.680 515 271 19 3 456 6 495 1.04e-60 206
MS.gene23880.t1 MTR_7g080180 31.008 516 278 21 1 456 1 498 2.46e-57 197
MS.gene23880.t1 MTR_1g050545 29.673 428 257 15 42 453 81 480 9.37e-53 185
MS.gene23880.t1 MTR_1g094155 29.778 450 266 17 25 453 66 486 5.71e-51 180
MS.gene23880.t1 MTR_8g011350 29.918 488 256 19 3 429 6 468 1.33e-50 179
MS.gene23880.t1 MTR_4g021520 27.331 472 304 16 7 456 16 470 1.38e-49 176
MS.gene23880.t1 MTR_4g021535 27.215 474 304 17 6 456 11 466 1.60e-49 176
MS.gene23880.t1 MTR_4g021530 26.427 473 307 17 7 456 16 470 3.70e-48 172
MS.gene23880.t1 MTR_4g021490 26.371 474 306 16 7 456 16 470 1.45e-47 170
MS.gene23880.t1 MTR_2g018590 27.079 469 298 14 16 456 17 469 3.56e-47 169
MS.gene23880.t1 MTR_4g021510 27.489 462 298 14 16 456 24 469 6.39e-47 169
MS.gene23880.t1 MTR_2g018600 27.069 447 288 12 34 456 37 469 7.22e-47 168
MS.gene23880.t1 MTR_3g100420 27.495 491 304 14 3 456 21 496 8.43e-47 169
MS.gene23880.t1 MTR_2g095750 29.561 433 245 20 46 454 102 498 1.67e-46 168
MS.gene23880.t1 MTR_4g057585 29.195 435 262 17 36 453 87 492 2.17e-46 167
MS.gene23880.t1 MTR_7g080180 30.380 474 252 21 1 414 1 456 4.87e-45 163
MS.gene23880.t1 MTR_4g021500 27.234 470 295 15 7 450 16 464 7.02e-45 168
MS.gene23880.t1 MTR_4g021500 26.852 432 278 14 37 456 482 887 3.70e-41 157
MS.gene23880.t1 MTR_2g018630 28.378 444 279 15 34 456 40 465 7.93e-45 163
MS.gene23880.t1 MTR_4g021500 27.234 470 295 15 7 450 16 464 9.05e-45 167
MS.gene23880.t1 MTR_4g021500 26.697 442 284 14 37 456 482 905 2.21e-42 160
MS.gene23880.t1 MTR_4g057595 28.671 429 261 16 41 453 94 493 1.10e-44 163
MS.gene23880.t1 MTR_7g051430 39.855 276 136 11 26 285 23 284 1.32e-44 161
MS.gene23880.t1 MTR_2g095730 27.934 426 264 16 46 454 96 495 3.04e-43 159
MS.gene23880.t1 MTR_4g057570 29.011 455 277 18 14 454 68 490 3.00e-42 156
MS.gene23880.t1 MTR_4g057600 28.205 429 255 16 46 454 97 492 1.17e-41 155
MS.gene23880.t1 MTR_3g045770 25.270 463 302 14 12 451 8 449 5.09e-40 149
MS.gene23880.t1 MTR_4g021520 26.512 430 277 16 7 414 16 428 1.31e-37 142
MS.gene23880.t1 MTR_7g100560 35.600 250 92 5 37 280 65 251 6.12e-36 135
MS.gene23880.t1 MTR_5g097180 26.364 440 284 11 21 451 24 432 8.91e-34 132
MS.gene23880.t1 MTR_4g021535 23.941 472 275 17 6 456 11 419 2.22e-33 130
MS.gene23880.t1 MTR_2g095710 27.790 439 256 22 35 454 85 481 3.62e-31 125
MS.gene23880.t1 MTR_2g009200 24.561 456 270 14 31 456 28 439 1.78e-29 120
MS.gene23880.t1 MTR_2g018630 25.824 364 240 12 106 456 14 360 1.14e-28 116
MS.gene23880.t1 MTR_4g084710 26.588 425 258 14 46 451 45 434 1.30e-28 117
MS.gene23880.t1 MTR_1g051175 48.039 102 52 1 38 138 20 121 1.73e-24 102
MS.gene23880.t1 MTR_4g056520 26.136 440 270 16 47 452 36 454 3.10e-19 90.1
MS.gene23880.t1 MTR_7g021040 82.051 39 7 0 418 456 19 57 1.68e-14 69.7
MS.gene23880.t1 MTR_2g084530 27.251 422 262 15 47 440 36 440 1.89e-14 75.5
MS.gene23880.t1 MTR_8g007520 45.070 71 39 0 342 412 111 181 2.11e-14 72.0
MS.gene23880.t1 MTR_2g039800 62.222 45 17 0 412 456 50 94 4.72e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23880.t1 AT1G28110 79.954 434 87 0 27 460 28 461 0.0 742
MS.gene23880.t1 AT1G28110 79.954 434 87 0 27 460 28 461 0.0 742
MS.gene23880.t1 AT2G33530 71.398 465 128 2 1 460 1 465 0.0 715
MS.gene23880.t1 AT1G43780 48.608 467 221 10 9 459 9 472 8.86e-150 435
MS.gene23880.t1 AT2G12480 45.824 467 233 10 5 459 1 459 9.90e-141 412
MS.gene23880.t1 AT5G42240 47.297 444 223 7 23 457 23 464 7.81e-140 410
MS.gene23880.t1 AT5G42230 44.956 456 240 7 13 459 9 462 1.35e-138 406
MS.gene23880.t1 AT5G42230 44.956 456 240 7 13 459 9 462 1.35e-138 406
MS.gene23880.t1 AT2G12480 44.731 465 217 10 5 459 1 435 1.54e-133 392
MS.gene23880.t1 AT2G12480 44.086 465 218 10 5 459 1 433 4.55e-131 386
MS.gene23880.t1 AT2G12480 43.991 466 218 11 5 459 1 434 2.73e-129 382
MS.gene23880.t1 AT2G24010 42.237 438 231 9 31 460 31 454 9.05e-117 350
MS.gene23880.t1 AT3G63470 43.155 431 228 8 31 458 82 498 7.22e-116 349
MS.gene23880.t1 AT3G02110 40.980 449 234 9 29 458 36 472 1.38e-115 348
MS.gene23880.t1 AT4G30610 39.955 448 240 10 29 460 31 465 5.24e-114 343
MS.gene23880.t1 AT2G24000 40.798 451 233 13 29 460 29 464 2.84e-112 339
MS.gene23880.t1 AT2G05850 40.732 437 235 9 31 458 64 485 1.23e-111 338
MS.gene23880.t1 AT2G24010 40.618 453 232 10 31 460 31 469 1.45e-111 337
MS.gene23880.t1 AT5G08260 38.086 491 249 11 4 459 8 478 1.26e-110 335
MS.gene23880.t1 AT3G07990 40.858 443 231 11 29 457 32 457 3.91e-109 331
MS.gene23880.t1 AT2G35780 38.789 446 250 10 21 457 20 451 2.65e-108 328
MS.gene23880.t1 AT4G30810 38.166 469 257 13 6 456 8 461 1.44e-106 325
MS.gene23880.t1 AT3G17180 40.564 461 240 9 19 457 27 475 3.17e-106 324
MS.gene23880.t1 AT2G24010 38.494 478 232 11 31 460 2 465 3.56e-106 323
MS.gene23880.t1 AT2G35770 38.612 461 261 10 4 457 13 458 3.63e-106 323
MS.gene23880.t1 AT1G61130 40.816 441 235 13 31 457 32 460 2.74e-104 318
MS.gene23880.t1 AT3G52010 41.230 439 229 13 31 458 65 485 2.90e-104 319
MS.gene23880.t1 AT1G11080 38.351 485 256 11 5 457 16 489 1.04e-103 318
MS.gene23880.t1 AT1G11080 38.351 485 256 11 5 457 16 489 1.26e-103 318
MS.gene23880.t1 AT4G15100 38.596 456 248 10 22 456 36 480 1.81e-102 315
MS.gene23880.t1 AT5G23210 36.266 466 252 10 23 457 44 495 3.17e-101 311
MS.gene23880.t1 AT3G52000 40.596 436 232 13 31 458 64 480 1.22e-98 305
MS.gene23880.t1 AT3G52020 39.080 435 241 11 31 457 80 498 3.02e-96 299
MS.gene23880.t1 AT3G17180 38.942 416 220 8 19 412 27 430 1.32e-88 277
MS.gene23880.t1 AT5G23210 35.154 421 229 9 23 412 44 451 1.49e-86 273
MS.gene23880.t1 AT5G23210 35.122 410 221 10 79 457 5 400 1.14e-79 253
MS.gene23880.t1 AT2G24010 38.736 364 191 8 31 371 2 356 1.39e-78 249
MS.gene23880.t1 AT5G23210 34.975 406 219 10 83 457 8 399 2.52e-78 249
MS.gene23880.t1 AT3G25420 33.663 505 263 17 9 456 5 494 6.05e-70 230
MS.gene23880.t1 AT4G12910 33.547 468 258 13 31 453 35 494 5.74e-66 220
MS.gene23880.t1 AT5G23210 33.518 361 196 9 83 412 8 355 7.63e-64 211
MS.gene23880.t1 AT1G33540 30.088 452 274 14 31 456 29 464 6.92e-58 198
MS.gene23880.t1 AT2G22990 29.128 436 268 13 34 456 26 433 2.08e-57 196
MS.gene23880.t1 AT1G73300 29.425 435 266 15 34 456 36 441 5.73e-57 195
MS.gene23880.t1 AT1G73300 29.425 435 266 15 34 456 36 441 5.73e-57 195
MS.gene23880.t1 AT1G73280 29.067 461 284 16 8 456 12 441 2.36e-56 193
MS.gene23880.t1 AT1G73290 30.505 436 258 15 34 456 35 438 2.24e-55 191
MS.gene23880.t1 AT1G33540 29.724 434 264 13 48 456 4 421 2.58e-55 190
MS.gene23880.t1 AT5G36180 28.995 438 270 15 31 456 33 441 2.74e-54 187
MS.gene23880.t1 AT3G56540 57.143 154 63 2 31 182 80 232 6.64e-54 181
MS.gene23880.t1 AT3G12230 29.399 449 254 15 31 456 27 435 8.92e-54 186
MS.gene23880.t1 AT3G12240 29.581 453 248 16 31 456 28 436 4.94e-53 184
MS.gene23880.t1 AT4G12910 32.401 429 237 13 31 414 35 455 2.25e-52 183
MS.gene23880.t1 AT3G10450 28.929 439 269 15 31 456 29 437 3.36e-52 182
MS.gene23880.t1 AT3G12203 28.281 442 261 12 34 456 12 416 6.15e-52 181
MS.gene23880.t1 AT5G09640 28.698 453 282 14 31 456 27 465 8.87e-52 181
MS.gene23880.t1 AT3G12203 28.315 445 263 12 31 456 30 437 1.01e-51 181
MS.gene23880.t1 AT2G22970 29.157 439 262 15 34 456 28 433 3.51e-51 179
MS.gene23880.t1 AT2G23000 28.315 445 268 14 31 456 25 437 4.86e-51 179
MS.gene23880.t1 AT2G23000 28.315 445 268 14 31 456 25 437 4.86e-51 179
MS.gene23880.t1 AT3G10450 28.979 421 257 14 48 456 4 394 5.94e-51 177
MS.gene23880.t1 AT3G12220 28.833 437 272 13 31 456 27 435 6.04e-51 179
MS.gene23880.t1 AT2G22990 28.211 436 263 14 34 456 26 424 6.42e-51 178
MS.gene23880.t1 AT2G22990 29.268 410 250 12 34 430 26 408 7.04e-51 178
MS.gene23880.t1 AT2G22990 29.095 409 254 11 34 431 26 409 7.20e-51 179
MS.gene23880.t1 AT2G22920 28.700 446 257 16 34 456 28 435 1.46e-50 177
MS.gene23880.t1 AT2G23010 26.681 461 301 12 8 456 2 437 2.93e-50 177
MS.gene23880.t1 AT1G73310 29.062 437 265 16 34 456 36 441 4.31e-50 176
MS.gene23880.t1 AT2G22980 26.835 436 272 14 34 456 29 430 1.27e-49 175
MS.gene23880.t1 AT3G12220 29.117 419 259 13 48 456 15 405 1.31e-49 174
MS.gene23880.t1 AT2G23010 26.464 461 302 12 8 456 2 437 2.12e-49 174
MS.gene23880.t1 AT1G73270 26.941 438 279 13 31 456 33 441 2.24e-49 174
MS.gene23880.t1 AT1G73270 26.941 438 279 13 31 456 33 441 3.02e-49 174
MS.gene23880.t1 AT3G45010 28.995 438 262 19 36 454 92 499 2.16e-48 173
MS.gene23880.t1 AT3G12203 27.885 416 245 11 59 456 1 379 6.16e-48 169
MS.gene23880.t1 AT2G24000 33.557 298 167 11 179 460 119 401 2.07e-47 168
MS.gene23880.t1 AT2G24000 52.222 90 40 2 29 115 29 118 3.31e-21 95.9
MS.gene23880.t1 AT5G22980 28.638 426 266 16 41 454 95 494 5.72e-46 167
MS.gene23880.t1 AT2G22970 28.986 414 246 14 34 431 28 409 1.58e-44 161
MS.gene23880.t1 AT3G10450 28.261 414 255 14 31 431 29 413 1.92e-44 160
MS.gene23880.t1 AT2G22970 29.056 413 245 14 34 430 28 408 4.44e-44 160
MS.gene23880.t1 AT3G10410 27.955 440 272 16 28 452 84 493 6.66e-44 161
MS.gene23880.t1 AT2G22980 26.764 411 255 13 34 431 29 406 1.23e-43 158
MS.gene23880.t1 AT2G22980 26.492 419 262 13 34 439 29 414 1.28e-43 159
MS.gene23880.t1 AT1G73290 29.873 395 233 14 34 415 35 398 2.87e-43 157
MS.gene23880.t1 AT3G10450 28.283 396 243 13 48 431 4 370 3.09e-43 156
MS.gene23880.t1 AT1G73310 28.250 400 243 15 34 419 36 405 7.47e-40 149
MS.gene23880.t1 AT2G22920 28.395 405 230 15 34 415 28 395 8.84e-40 148
MS.gene23880.t1 AT1G73280 27.809 356 225 12 105 456 12 339 2.20e-38 142
MS.gene23880.t1 AT1G73290 35.000 220 131 5 34 243 35 252 8.93e-38 140
MS.gene23880.t1 AT2G22990 27.405 343 221 9 117 456 2 319 2.54e-37 139
MS.gene23880.t1 AT1G73280 29.429 350 211 12 8 345 12 337 4.45e-37 140
MS.gene23880.t1 AT5G36180 27.809 356 225 12 105 456 12 339 8.80e-37 138
MS.gene23880.t1 AT5G36180 27.809 356 225 12 105 456 12 339 8.80e-37 138
MS.gene23880.t1 AT2G22990 27.114 343 222 9 117 456 2 319 2.02e-36 137
MS.gene23880.t1 AT1G73280 27.778 342 215 12 119 456 1 314 2.22e-35 134
MS.gene23880.t1 AT3G12220 29.121 364 226 12 31 379 27 373 2.63e-34 132
MS.gene23880.t1 AT2G22920 34.247 219 132 5 34 242 28 244 3.46e-33 128
MS.gene23880.t1 AT2G22970 34.978 223 124 7 34 242 28 243 1.51e-32 126
MS.gene23880.t1 AT2G22980 28.213 319 192 11 34 340 29 322 1.54e-31 124
MS.gene23880.t1 AT5G36180 27.190 331 210 11 105 431 12 315 8.34e-30 119
MS.gene23880.t1 AT1G15000 26.841 421 267 13 46 456 37 426 5.71e-29 119
MS.gene23880.t1 AT5G36180 26.752 314 199 11 105 414 12 298 5.64e-24 102
MS.gene23880.t1 AT1G73310 26.791 321 200 12 105 419 12 303 6.88e-24 102
MS.gene23880.t1 AT2G22980 23.750 320 207 10 117 431 2 289 3.40e-23 99.8
MS.gene23880.t1 AT5G22960 33.529 170 90 5 36 202 25 174 3.28e-22 94.4
MS.gene23880.t1 AT2G27920 25.328 458 301 14 11 440 1 445 7.07e-21 95.5
MS.gene23880.t1 AT2G22920 25.188 266 158 10 200 456 23 256 5.74e-18 84.0

Find 89 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAATTTGTGATCTTATT+AGG 0.075907 7.1:-77317799 None:intergenic
GAGAAGTTGTTTAATTTAAA+AGG 0.202110 7.1:+77319701 MS.gene23880:CDS
GGTGGTTGGACTCAAGTTTA+TGG 0.215056 7.1:+77322144 MS.gene23880:CDS
TTTCCAAACCTCTTGTTCTT+TGG 0.225038 7.1:+77317929 MS.gene23880:CDS
ATCTAATCTTCTTGCAAAAC+TGG 0.232198 7.1:+77319262 MS.gene23880:CDS
TTTCAGAAAATGGGCCATTT+AGG 0.242646 7.1:+77318088 MS.gene23880:CDS
GCTTCTCCTTTAGGCCTAAA+TGG 0.254584 7.1:-77318102 None:intergenic
AAGCTTCTGTTTCTGTATTC+AGG 0.258582 7.1:-77319297 None:intergenic
CCTTACAGGGTGTGGTTTGC+AGG 0.266155 7.1:+77321927 MS.gene23880:CDS
CTAACCAAAGCTTCTCCTTT+AGG 0.269711 7.1:-77318111 None:intergenic
CCTCTTGTTCTTTGGCTCAA+TGG 0.289869 7.1:+77317937 MS.gene23880:CDS
TGAATACCACTGTGCCTTAC+AGG 0.289888 7.1:+77321913 MS.gene23880:CDS
ATTCAAGAGCTGAGTTCTTT+TGG 0.300704 7.1:+77320101 MS.gene23880:CDS
GTAAATTTGTGATCTTATTA+GGG 0.331087 7.1:-77317798 None:intergenic
TATGCTCCAATTCAACAAAA+AGG 0.337276 7.1:+77319679 MS.gene23880:CDS
AGACTGTCAATTATCTTAAC+AGG 0.354537 7.1:+77320681 MS.gene23880:CDS
GGGCCTGGTTGTTCTTCTCT+TGG 0.358083 7.1:+77318054 MS.gene23880:intron
CTGTTTAAGTCTTTCTTAGA+AGG 0.361000 7.1:+77322243 MS.gene23880:CDS
GCTCATTACACTTGAACAAA+TGG 0.365760 7.1:-77320221 None:intergenic
TCTGTTGCAAATTCTAGAAC+TGG 0.381458 7.1:-77320073 None:intergenic
GGTGTAAATGACAAGATTAC+AGG 0.386172 7.1:+77318878 MS.gene23880:CDS
CAAGGCAGGAGTTCCAGTTT+TGG 0.395452 7.1:+77321270 MS.gene23880:CDS
GCTTTACATGCACATCTGAT+TGG 0.395553 7.1:+77320719 MS.gene23880:CDS
CACCTGTGTTCCAGCTGAAC+TGG 0.397389 7.1:-77318137 None:intergenic
AACACTAATCAAAATTCTTC+TGG 0.403928 7.1:-77322276 None:intergenic
TACTATCATTTGCAACAGTT+AGG 0.406670 7.1:+77322172 MS.gene23880:CDS
TAAGAAAATCCTACTCCAAT+TGG 0.412031 7.1:-77318830 None:intergenic
AGCTTCTGTTTCTGTATTCA+GGG 0.412704 7.1:-77319296 None:intergenic
TAGGCCTAAAGGAGAAGCTT+TGG 0.415723 7.1:+77318107 MS.gene23880:CDS
AGGTCATTATGTTCCTCAAT+TGG 0.418352 7.1:+77319649 MS.gene23880:intron
ACTATCATTTGCAACAGTTA+GGG 0.420978 7.1:+77322173 MS.gene23880:CDS
ACATACCTGTAGACCAAAAC+TGG 0.425053 7.1:-77321283 None:intergenic
GAGCCAAAGAACAAGAGGTT+TGG 0.427927 7.1:-77317932 None:intergenic
GGTGTGGTTTGCAGGCCAAC+AGG 0.436379 7.1:+77321935 MS.gene23880:CDS
GGTTGTTCTTCTCTTGGTGT+TGG 0.436843 7.1:+77318060 MS.gene23880:CDS
TAGAACTCTAGTACATCAAT+TGG 0.445118 7.1:+77321875 MS.gene23880:CDS
TACTTGTTTCTGTACTAACT+TGG 0.447886 7.1:-77320243 None:intergenic
TGGTTAGGAACCAGTTCAGC+TGG 0.449673 7.1:+77318127 MS.gene23880:CDS
CCTGCAAACCACACCCTGTA+AGG 0.452020 7.1:-77321927 None:intergenic
CGATCTCTCAGGCTGTGAAA+AGG 0.457438 7.1:-77322214 None:intergenic
CTCATTACACTTGAACAAAT+GGG 0.461870 7.1:-77320220 None:intergenic
CTTTATGTCAATCAGTGTGT+TGG 0.463466 7.1:+77321192 MS.gene23880:intron
TTGCCGACAACCGTGATTGT+TGG 0.469285 7.1:-77321241 None:intergenic
CAAAGAGAATTACCTGCTGC+AGG 0.474248 7.1:-77320759 None:intergenic
GATTCAGTTATTCCATTGAC+TGG 0.474345 7.1:+77321849 MS.gene23880:CDS
CACCTGAGTATTGAGGACTT+TGG 0.483689 7.1:-77320326 None:intergenic
CAAGAAGATTAGATTATCCC+TGG 0.488331 7.1:-77319253 None:intergenic
CTAAAGGAGAAGCTTTGGTT+AGG 0.492575 7.1:+77318112 MS.gene23880:CDS
AGAGGCAAATATGTTGTACT+TGG 0.493990 7.1:+77318802 MS.gene23880:intron
AGAGTTCTACTTCCAGTCAA+TGG 0.496676 7.1:-77321861 None:intergenic
ACGGATACTTCAACTTATGA+AGG 0.498127 7.1:+77318857 MS.gene23880:CDS
ACTTGAACAAATGGGAGAAA+CGG 0.502123 7.1:-77320212 None:intergenic
CAGAAGATATACAAACATCA+AGG 0.511989 7.1:-77320291 None:intergenic
ATCTGATTGGAGTACATAGA+TGG 0.512377 7.1:+77320732 MS.gene23880:CDS
AACAGCACAAGCGATCTCTC+AGG 0.518018 7.1:-77322225 None:intergenic
GATCTCTCAGGCTGTGAAAA+GGG 0.519136 7.1:-77322213 None:intergenic
ATAGATGGTCTCCCTGCAGC+AGG 0.526560 7.1:+77320747 MS.gene23880:CDS
TTGTACTTGGAATCACCAAT+TGG 0.528164 7.1:+77318815 MS.gene23880:CDS
GGATTATGAGTTGCGTGACT+TGG 0.530856 7.1:+77321213 MS.gene23880:CDS
AACCAGTTCAGCTGGAACAC+AGG 0.532001 7.1:+77318135 MS.gene23880:CDS
ATCGTAGGAGAGAGCTATGC+CGG 0.540126 7.1:+77319324 MS.gene23880:CDS
AATGGGCCATTTAGGCCTAA+AGG 0.545330 7.1:+77318096 MS.gene23880:CDS
CCACTGTGCCTTACAGGGTG+TGG 0.547254 7.1:+77321919 MS.gene23880:CDS
AATCAAAATTCTTCTGGCAG+AGG 0.550296 7.1:-77322270 None:intergenic
ATACCAACAATCACGGTTGT+CGG 0.552329 7.1:+77321238 MS.gene23880:CDS
GTCGGCAAGCTAGTCAAGGC+AGG 0.561638 7.1:+77321256 MS.gene23880:CDS
ATAAACTCACCTGAGTATTG+AGG 0.563913 7.1:-77320333 None:intergenic
CTTGTTCTTTGGCTCAATGG+AGG 0.565339 7.1:+77317940 MS.gene23880:CDS
TTGGAATCACCAATTGGAGT+AGG 0.570704 7.1:+77318821 MS.gene23880:CDS
AAATCAACATGTGGTTGACC+AGG 0.571157 7.1:-77317820 None:intergenic
AGCATAAGCTCAGCCAATTG+AGG 0.572712 7.1:-77319662 None:intergenic
CAAATAGCAAGTGACTGAAA+CGG 0.583402 7.1:+77320637 MS.gene23880:intron
CCATTGAGCCAAAGAACAAG+AGG 0.585597 7.1:-77317937 None:intergenic
GAATACCACTGTGCCTTACA+GGG 0.587962 7.1:+77321914 MS.gene23880:CDS
TATGTGAGAGAATACTATAA+CGG 0.590701 7.1:+77320187 MS.gene23880:CDS
TGCAGCAACACACATTGCAA+TGG 0.598224 7.1:-77317740 None:intergenic
CTATCATTTGCAACAGTTAG+GGG 0.601913 7.1:+77322174 MS.gene23880:CDS
ACACCAAGAGAAGAACAACC+AGG 0.602850 7.1:-77318057 None:intergenic
AATAAGATCACAAATTTACC+TGG 0.604906 7.1:+77317802 MS.gene23880:CDS
ATTAGGGTGTGAAACTGCAA+AGG 0.615335 7.1:-77317782 None:intergenic
AGAAGATATACAAACATCAA+GGG 0.621855 7.1:-77320290 None:intergenic
AACCAAAGTCCTCAATACTC+AGG 0.621880 7.1:+77320324 MS.gene23880:CDS
AAAGAGAATTACCTGCTGCA+GGG 0.624612 7.1:-77320758 None:intergenic
GGTTGTCGGCAAGCTAGTCA+AGG 0.630864 7.1:+77321252 MS.gene23880:CDS
ACAACAAAGTAGAGAAGACA+TGG 0.637953 7.1:-77317716 None:intergenic
CTTGGAGATACCAACAATCA+CGG 0.653663 7.1:+77321231 MS.gene23880:CDS
AACTGATGAAAATCAACATG+TGG 0.670035 7.1:-77317829 None:intergenic
AACAGAAGCTTGTTCATCGT+AGG 0.672452 7.1:+77319309 MS.gene23880:CDS
CCACACCCTGTAAGGCACAG+TGG 0.736142 7.1:-77321919 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAACAAAAAATATAATAA+GGG - chr7.1:77322036-77322055 None:intergenic 10.0%
!! TTTGAACAAAAAATATAATA+AGG - chr7.1:77322037-77322056 None:intergenic 10.0%
!!! GTAAAAAAGTTTTTAAAATA+GGG - chr7.1:77318254-77318273 None:intergenic 10.0%
!!! TTTATTTTCATATACAATAT+TGG - chr7.1:77321554-77321573 None:intergenic 10.0%
!!! TTTTTTGTTCAAAATATTAA+TGG + chr7.1:77322044-77322063 MS.gene23880:intron 10.0%
!! AATAAGAAAAGAAGAATAAT+TGG - chr7.1:77319754-77319773 None:intergenic 15.0%
!! ATAAAAATGTTTGAATCAAA+TGG - chr7.1:77318977-77318996 None:intergenic 15.0%
!! CAATTAATTATGATTTATGA+AGG - chr7.1:77321802-77321821 None:intergenic 15.0%
!! TAAAATACAAACTTCAAATT+TGG - chr7.1:77320446-77320465 None:intergenic 15.0%
!!! CGTAAAAAAGTTTTTAAAAT+AGG - chr7.1:77318255-77318274 None:intergenic 15.0%
!!! TATTACTTTGTTTATTTCTT+TGG + chr7.1:77319568-77319587 MS.gene23880:intron 15.0%
!!! TATTTACATTTTACAATTCT+AGG + chr7.1:77319510-77319529 MS.gene23880:intron 15.0%
!!! TTAAAAACTTTTTTACGAAA+AGG + chr7.1:77318258-77318277 MS.gene23880:intron 15.0%
!! ATTATGTTATGCAAAACTTT+AGG - chr7.1:77319091-77319110 None:intergenic 20.0%
!! ATTGTAAAAACTGAAATTGA+AGG - chr7.1:77320563-77320582 None:intergenic 20.0%
!! GTAAATTTGTGATCTTATTA+GGG - chr7.1:77317801-77317820 None:intergenic 20.0%
!! TCATATAAATGTTCATGTAT+AGG - chr7.1:77318476-77318495 None:intergenic 20.0%
!! TGAAAAGTTAAATTTACATC+TGG - chr7.1:77321738-77321757 None:intergenic 20.0%
!! TTAGAATATTCATAACGTAA+GGG - chr7.1:77319400-77319419 None:intergenic 20.0%
!!! AACATGTTTTATGATAAGAA+AGG - chr7.1:77321125-77321144 None:intergenic 20.0%
!!! AGAAACATGATTTTAAATTG+CGG + chr7.1:77320797-77320816 MS.gene23880:intron 20.0%
!!! ATGATAAGTTATTGTTTTAC+CGG - chr7.1:77319346-77319365 None:intergenic 20.0%
!!! GAGAAGTTGTTTAATTTAAA+AGG + chr7.1:77319701-77319720 MS.gene23880:CDS 20.0%
!!! GTGTTTTGTAATTTATCATT+AGG + chr7.1:77319629-77319648 MS.gene23880:intron 20.0%
!!! TCTTACTTATTACATGTTTT+TGG + chr7.1:77321318-77321337 MS.gene23880:intron 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG + chr7.1:77318506-77318525 MS.gene23880:intron 20.0%
!!! TTATTCTAAGATCAAATAGA+AGG - chr7.1:77318922-77318941 None:intergenic 20.0%
!!! TTTAAAATCATGTTTCTTGT+AGG - chr7.1:77320794-77320813 None:intergenic 20.0%
!!! TTTAGAATAATCTTGTGAAT+AGG + chr7.1:77321471-77321490 MS.gene23880:intron 20.0%
!!! TTTAGAATATTCATAACGTA+AGG - chr7.1:77319401-77319420 None:intergenic 20.0%
! AAAACCAAGACAAATCTTTA+AGG - chr7.1:77319204-77319223 None:intergenic 25.0%
! AAATGAAACCAACACATTAA+TGG - chr7.1:77318732-77318751 None:intergenic 25.0%
! AATAAGATCACAAATTTACC+TGG + chr7.1:77317802-77317821 MS.gene23880:CDS 25.0%
! ACAAATTCTACATTGAAATC+TGG + chr7.1:77321042-77321061 MS.gene23880:intron 25.0%
! ACATGACAGAATTTAGTAAA+AGG - chr7.1:77319060-77319079 None:intergenic 25.0%
! AGAAGATATACAAACATCAA+GGG - chr7.1:77320293-77320312 None:intergenic 25.0%
! ATACAAAATTAGTGTAGACA+AGG - chr7.1:77318182-77318201 None:intergenic 25.0%
! GGTAAATTTGTGATCTTATT+AGG - chr7.1:77317802-77317821 None:intergenic 25.0%
! TATGTGAGAGAATACTATAA+CGG + chr7.1:77320187-77320206 MS.gene23880:CDS 25.0%
! TCTATAAGGACTAAATACAT+GGG - chr7.1:77318551-77318570 None:intergenic 25.0%
! TTAAATTTACATCTGGACTA+AGG - chr7.1:77321731-77321750 None:intergenic 25.0%
! TTCTATAAGGACTAAATACA+TGG - chr7.1:77318552-77318571 None:intergenic 25.0%
!! AAATGTCTGTAAATTTTGTC+TGG + chr7.1:77318221-77318240 MS.gene23880:intron 25.0%
!! CTCAATTCTATTCTTTTGAA+TGG + chr7.1:77318944-77318963 MS.gene23880:intron 25.0%
!!! AAAGTCAAAGTATTTTCATG+AGG - chr7.1:77321584-77321603 None:intergenic 25.0%
!!! AACATAATTGCTTGTTTTAG+TGG + chr7.1:77321378-77321397 MS.gene23880:intron 25.0%
!!! AATAGGTTGAAAACATCTTT+TGG - chr7.1:77321519-77321538 None:intergenic 25.0%
!!! TTGAAAAATTTGTTTTGCAG+TGG + chr7.1:77321819-77321838 MS.gene23880:intron 25.0%
!!! TTGTTTCATGTTGTTTTGAA+GGG + chr7.1:77318034-77318053 MS.gene23880:intron 25.0%
!!! TTTGTTTCATGTTGTTTTGA+AGG + chr7.1:77318033-77318052 MS.gene23880:intron 25.0%
AAAACAACACTATTATGCAG+TGG - chr7.1:77319161-77319180 None:intergenic 30.0%
AACTGATGAAAATCAACATG+TGG - chr7.1:77317832-77317851 None:intergenic 30.0%
AACTTTATGGAAACGACTTA+TGG - chr7.1:77318373-77318392 None:intergenic 30.0%
ACATAAGCGCTTATCATATA+AGG - chr7.1:77321644-77321663 None:intergenic 30.0%
ACCAACACATTAATGGAAAT+TGG - chr7.1:77318725-77318744 None:intergenic 30.0%
ACTATCATTTGCAACAGTTA+GGG + chr7.1:77322173-77322192 MS.gene23880:CDS 30.0%
AGACTGTCAATTATCTTAAC+AGG + chr7.1:77320681-77320700 MS.gene23880:CDS 30.0%
AGACTGTTTGGAAGAATTTA+TGG + chr7.1:77318329-77318348 MS.gene23880:intron 30.0%
ATAAACCAGAAAGAAAAAGC+TGG - chr7.1:77319820-77319839 None:intergenic 30.0%
ATCTAATCTTCTTGCAAAAC+TGG + chr7.1:77319262-77319281 MS.gene23880:CDS 30.0%
CAATTCACATTTACACACAA+TGG - chr7.1:77318781-77318800 None:intergenic 30.0%
CAGAAGATATACAAACATCA+AGG - chr7.1:77320294-77320313 None:intergenic 30.0%
CAGCAATAAGGTTTAAATTG+AGG - chr7.1:77320897-77320916 None:intergenic 30.0%
CATAAGCGCTTATCATATAA+GGG - chr7.1:77321643-77321662 None:intergenic 30.0%
CTCATTACACTTGAACAAAT+GGG - chr7.1:77320223-77320242 None:intergenic 30.0%
CTGTTTAAGTCTTTCTTAGA+AGG + chr7.1:77322243-77322262 MS.gene23880:CDS 30.0%
TAAGAAAATCCTACTCCAAT+TGG - chr7.1:77318833-77318852 None:intergenic 30.0%
TACTATCATTTGCAACAGTT+AGG + chr7.1:77322172-77322191 MS.gene23880:CDS 30.0%
TAGAACTCTAGTACATCAAT+TGG + chr7.1:77321875-77321894 MS.gene23880:CDS 30.0%
TAGATAAACTAAACCATGCA+TGG - chr7.1:77318284-77318303 None:intergenic 30.0%
TATATGTAGACAACTAGACA+TGG - chr7.1:77321777-77321796 None:intergenic 30.0%
TATGCTCCAATTCAACAAAA+AGG + chr7.1:77319679-77319698 MS.gene23880:CDS 30.0%
TCATTGAACGAAGTTTATGT+AGG + chr7.1:77318587-77318606 MS.gene23880:intron 30.0%
TCCAATTTCCATTAATGTGT+TGG + chr7.1:77318721-77318740 MS.gene23880:intron 30.0%
TGTACCTTAAAGATTTGTCT+TGG + chr7.1:77319197-77319216 MS.gene23880:intron 30.0%
TTTCACAAACTATTCTTCTG+AGG - chr7.1:77321443-77321462 None:intergenic 30.0%
! ACTTCTCCTTTTTGTTGAAT+TGG - chr7.1:77319688-77319707 None:intergenic 30.0%
! AGTAGGATTTTCTTATTCGA+CGG + chr7.1:77318838-77318857 MS.gene23880:CDS 30.0%
! ATGCAAAACTTTAGGAGAAA+GGG - chr7.1:77319083-77319102 None:intergenic 30.0%
! CATCACCTTTTTCTTTATGT+TGG + chr7.1:77319792-77319811 MS.gene23880:intron 30.0%
! GTGTCTATTTTGCTTCTATA+AGG - chr7.1:77318565-77318584 None:intergenic 30.0%
! TATGCAAAACTTTAGGAGAA+AGG - chr7.1:77319084-77319103 None:intergenic 30.0%
! TGGGCTAATAACACTTATTT+TGG - chr7.1:77318532-77318551 None:intergenic 30.0%
! TTGGTGCATTTTCAGAAAAT+GGG + chr7.1:77318079-77318098 MS.gene23880:CDS 30.0%
!! AAGTAACTTGTGACTTTTAC+TGG + chr7.1:77321417-77321436 MS.gene23880:intron 30.0%
!! CAATCAAGTTTAAAGTACTG+AGG + chr7.1:77320579-77320598 MS.gene23880:intron 30.0%
!! GTTGATTTTCATCAGTTTTC+AGG + chr7.1:77317835-77317854 MS.gene23880:CDS 30.0%
!! TACTTGTTTCTGTACTAACT+TGG - chr7.1:77320246-77320265 None:intergenic 30.0%
!!! ATAATCTCGCTCTTATTTTC+AGG + chr7.1:77322119-77322138 MS.gene23880:intron 30.0%
AATGTCGAAGACACGTTTAA+AGG + chr7.1:77319472-77319491 MS.gene23880:intron 35.0%
ACGGATACTTCAACTTATGA+AGG + chr7.1:77318857-77318876 MS.gene23880:CDS 35.0%
ACTTGAACAAATGGGAGAAA+CGG - chr7.1:77320215-77320234 None:intergenic 35.0%
AGAGGCAAATATGTTGTACT+TGG + chr7.1:77318802-77318821 MS.gene23880:intron 35.0%
AGGTCATTATGTTCCTCAAT+TGG + chr7.1:77319649-77319668 MS.gene23880:intron 35.0%
AGTCGTTTCCATAAAGTTCT+CGG + chr7.1:77318375-77318394 MS.gene23880:intron 35.0%
ATATTGACATGTGTGACATG+CGG + chr7.1:77319927-77319946 MS.gene23880:intron 35.0%
ATCTGATTGGAGTACATAGA+TGG + chr7.1:77320732-77320751 MS.gene23880:CDS 35.0%
ATTGGAGAGCTCATGAAAAT+AGG - chr7.1:77321536-77321555 None:intergenic 35.0%
ATTTAGATCGAAGTCATGTC+CGG + chr7.1:77319875-77319894 MS.gene23880:intron 35.0%
CAAATAGCAAGTGACTGAAA+CGG + chr7.1:77320637-77320656 MS.gene23880:intron 35.0%
CAAGAAGATTAGATTATCCC+TGG - chr7.1:77319256-77319275 None:intergenic 35.0%
CAATATCAACAAAGCACGAT+AGG - chr7.1:77321966-77321985 None:intergenic 35.0%
CAATTCAAATTCAAGAGGCA+AGG - chr7.1:77320922-77320941 None:intergenic 35.0%
CTATCATTTGCAACAGTTAG+GGG + chr7.1:77322174-77322193 MS.gene23880:CDS 35.0%
CTTTATGTCAATCAGTGTGT+TGG + chr7.1:77321192-77321211 MS.gene23880:intron 35.0%
GATTCAGTTATTCCATTGAC+TGG + chr7.1:77321849-77321868 MS.gene23880:CDS 35.0%
GCTCATTACACTTGAACAAA+TGG - chr7.1:77320224-77320243 None:intergenic 35.0%
GGGACTAAATTGATGCAAAT+TGG - chr7.1:77319380-77319399 None:intergenic 35.0%
GGGCATTTAACTATATGTGT+CGG - chr7.1:77322016-77322035 None:intergenic 35.0%
GGTGTAAATGACAAGATTAC+AGG + chr7.1:77318878-77318897 MS.gene23880:CDS 35.0%
TACTCAGGTGAGTTTATCAT+CGG + chr7.1:77320339-77320358 MS.gene23880:intron 35.0%
TGGCACCAACATAAAGAAAA+AGG - chr7.1:77319800-77319819 None:intergenic 35.0%
TGTCTTTCTCTTTATAGCCA+GGG + chr7.1:77319236-77319255 MS.gene23880:intron 35.0%
TGTGTAAATGTGAATTGCAG+AGG + chr7.1:77318784-77318803 MS.gene23880:intron 35.0%
TTCTTATTCTTGCTAGTGCT+AGG + chr7.1:77319766-77319785 MS.gene23880:intron 35.0%
TTGTACTTGGAATCACCAAT+TGG + chr7.1:77318815-77318834 MS.gene23880:CDS 35.0%
TTGTCTTTCTCTTTATAGCC+AGG + chr7.1:77319235-77319254 MS.gene23880:intron 35.0%
TTTCAGAAAATGGGCCATTT+AGG + chr7.1:77318088-77318107 MS.gene23880:CDS 35.0%
TTTCCAAACCTCTTGTTCTT+TGG + chr7.1:77317929-77317948 MS.gene23880:CDS 35.0%
! ATAAACTCACCTGAGTATTG+AGG - chr7.1:77320336-77320355 None:intergenic 35.0%
! ATTCAAGAGCTGAGTTCTTT+TGG + chr7.1:77320101-77320120 MS.gene23880:CDS 35.0%
! GTTGGTGCATTTTCAGAAAA+TGG + chr7.1:77318078-77318097 MS.gene23880:CDS 35.0%
!! AAGCTTCTGTTTCTGTATTC+AGG - chr7.1:77319300-77319319 None:intergenic 35.0%
!! AGCTTCTGTTTCTGTATTCA+GGG - chr7.1:77319299-77319318 None:intergenic 35.0%
!! TCTGTTGCAAATTCTAGAAC+TGG - chr7.1:77320076-77320095 None:intergenic 35.0%
!!! TAATTGCTTGTTTTAGTGGC+TGG + chr7.1:77321382-77321401 MS.gene23880:intron 35.0%
AAAGAGAATTACCTGCTGCA+GGG - chr7.1:77320761-77320780 None:intergenic 40.0%
AAATCAACATGTGGTTGACC+AGG - chr7.1:77317823-77317842 None:intergenic 40.0%
AACCAAAGTCCTCAATACTC+AGG + chr7.1:77320324-77320343 MS.gene23880:CDS 40.0%
ACATACCTGTAGACCAAAAC+TGG - chr7.1:77321286-77321305 None:intergenic 40.0%
AGAGTTCTACTTCCAGTCAA+TGG - chr7.1:77321864-77321883 None:intergenic 40.0%
AGCTATCTCCGAGAACTTTA+TGG - chr7.1:77318386-77318405 None:intergenic 40.0%
ATACCAACAATCACGGTTGT+CGG + chr7.1:77321238-77321257 MS.gene23880:CDS 40.0%
ATCCGTGCATTCAGATACAT+TGG - chr7.1:77320538-77320557 None:intergenic 40.0%
ATTAGGGTGTGAAACTGCAA+AGG - chr7.1:77317785-77317804 None:intergenic 40.0%
CACACATGTCAATATCGTGT+TGG - chr7.1:77319922-77319941 None:intergenic 40.0%
CACCAATGTATCTGAATGCA+CGG + chr7.1:77320533-77320552 MS.gene23880:intron 40.0%
CTAACCAAAGCTTCTCCTTT+AGG - chr7.1:77318114-77318133 None:intergenic 40.0%
CTTGGAGATACCAACAATCA+CGG + chr7.1:77321231-77321250 MS.gene23880:CDS 40.0%
GCAGGCAATTCAAATTCAAG+AGG - chr7.1:77320927-77320946 None:intergenic 40.0%
GCTTTACATGCACATCTGAT+TGG + chr7.1:77320719-77320738 MS.gene23880:CDS 40.0%
GTTGATCGATCAAGATTGTG+CGG - chr7.1:77320513-77320532 None:intergenic 40.0%
TCGACATTGTTACCAATGCA+GGG - chr7.1:77319460-77319479 None:intergenic 40.0%
TTCGACATTGTTACCAATGC+AGG - chr7.1:77319461-77319480 None:intergenic 40.0%
TTGGAATCACCAATTGGAGT+AGG + chr7.1:77318821-77318840 MS.gene23880:CDS 40.0%
TTGGTTATCGTTGGACTGTT+CGG - chr7.1:77321073-77321092 None:intergenic 40.0%
! AACAGAAGCTTGTTCATCGT+AGG + chr7.1:77319309-77319328 MS.gene23880:CDS 40.0%
! CTAAAGGAGAAGCTTTGGTT+AGG + chr7.1:77318112-77318131 MS.gene23880:CDS 40.0%
! TTTTACGAAAAGGCCATGCA+TGG + chr7.1:77318268-77318287 MS.gene23880:intron 40.0%
!!! CTTATTTTCAGGTTGGTGGT+TGG + chr7.1:77322130-77322149 MS.gene23880:intron 40.0%
!!! TCTCGCTCTTATTTTCAGGT+TGG + chr7.1:77322123-77322142 MS.gene23880:intron 40.0%
!!! TTTGTTTTGCAGTGGTGATC+AGG + chr7.1:77321827-77321846 MS.gene23880:intron 40.0%
AATGGGCCATTTAGGCCTAA+AGG + chr7.1:77318096-77318115 MS.gene23880:CDS 45.0%
ACACCAAGAGAAGAACAACC+AGG - chr7.1:77318060-77318079 None:intergenic 45.0%
AGCATAAGCTCAGCCAATTG+AGG - chr7.1:77319665-77319684 None:intergenic 45.0%
CAAAGAGAATTACCTGCTGC+AGG - chr7.1:77320762-77320781 None:intergenic 45.0%
CACATCAGTGGTCGTTAGAT+TGG + chr7.1:77320972-77320991 MS.gene23880:intron 45.0%
CACTGACACATGTTTGACAC+CGG - chr7.1:77319897-77319916 None:intergenic 45.0%
CATTGTTACCAATGCAGGGA+CGG - chr7.1:77319456-77319475 None:intergenic 45.0%
CCATTGAGCCAAAGAACAAG+AGG - chr7.1:77317940-77317959 None:intergenic 45.0%
CGTGCATTCAGATACATTGG+TGG - chr7.1:77320535-77320554 None:intergenic 45.0%
GAATACCACTGTGCCTTACA+GGG + chr7.1:77321914-77321933 MS.gene23880:CDS 45.0%
GAGCCAAAGAACAAGAGGTT+TGG - chr7.1:77317935-77317954 None:intergenic 45.0%
GATCTCTCAGGCTGTGAAAA+GGG - chr7.1:77322216-77322235 None:intergenic 45.0%
GCTTCTCCTTTAGGCCTAAA+TGG - chr7.1:77318105-77318124 None:intergenic 45.0%
GGATTATGAGTTGCGTGACT+TGG + chr7.1:77321213-77321232 MS.gene23880:CDS 45.0%
GGTGAGTTTATCATCGGATC+TGG + chr7.1:77320345-77320364 MS.gene23880:intron 45.0%
GGTGGTTGGACTCAAGTTTA+TGG + chr7.1:77322144-77322163 MS.gene23880:CDS 45.0%
TAGGCCTAAAGGAGAAGCTT+TGG + chr7.1:77318107-77318126 MS.gene23880:CDS 45.0%
TCCAACGATAACCAATGTGC+CGG + chr7.1:77321078-77321097 MS.gene23880:intron 45.0%
TGAATACCACTGTGCCTTAC+AGG + chr7.1:77321913-77321932 MS.gene23880:CDS 45.0%
TGCAGCAACACACATTGCAA+TGG - chr7.1:77317743-77317762 None:intergenic 45.0%
! CCTCTTGTTCTTTGGCTCAA+TGG + chr7.1:77317937-77317956 MS.gene23880:CDS 45.0%
! CTTGTTCTTTGGCTCAATGG+AGG + chr7.1:77317940-77317959 MS.gene23880:CDS 45.0%
! GAAGCACTTGTGAGACTGTT+TGG + chr7.1:77318317-77318336 MS.gene23880:intron 45.0%
! GAGTTTGCTTTCATGCAGCT+TGG + chr7.1:77320046-77320065 MS.gene23880:intron 45.0%
! GCTGAGTTCTTTTGGTCTCA+TGG + chr7.1:77320109-77320128 MS.gene23880:CDS 45.0%
! GGTTGTTCTTCTCTTGGTGT+TGG + chr7.1:77318060-77318079 MS.gene23880:CDS 45.0%
!! CACCTGAGTATTGAGGACTT+TGG - chr7.1:77320329-77320348 None:intergenic 45.0%
!! CATGGAATTGTGTTGACTGC+AGG - chr7.1:77320945-77320964 None:intergenic 45.0%
!! GAGTTCCAGTTTTGGTCTAC+AGG + chr7.1:77321278-77321297 MS.gene23880:CDS 45.0%
!! TATATGTGTCGGTGTCGTGT+AGG - chr7.1:77322005-77322024 None:intergenic 45.0%
!! TGGTGCCAGCTTTTTCTTTC+TGG + chr7.1:77319812-77319831 MS.gene23880:intron 45.0%
!!! CGCTCTTATTTTCAGGTTGG+TGG + chr7.1:77322126-77322145 MS.gene23880:intron 45.0%
!!! TCATGTTGTTTTGAAGGGCC+TGG + chr7.1:77318039-77318058 MS.gene23880:intron 45.0%
!! ACAAAAAAAAAAAAAAAAAT+TGG + chr7.1:77318649-77318668 MS.gene23880:intron 5.0%
!!! TTAATCTTTTTATTATATTA+TGG + chr7.1:77318695-77318714 MS.gene23880:intron 5.0%
AACAGCACAAGCGATCTCTC+AGG - chr7.1:77322228-77322247 None:intergenic 50.0%
AACCAGTTCAGCTGGAACAC+AGG + chr7.1:77318135-77318154 MS.gene23880:CDS 50.0%
AATCAAGTCCGTCCCTGCAT+TGG + chr7.1:77319445-77319464 MS.gene23880:intron 50.0%
AGAGGCAAGGCACAGCAATA+AGG - chr7.1:77320909-77320928 None:intergenic 50.0%
ATCGTAGGAGAGAGCTATGC+CGG + chr7.1:77319324-77319343 MS.gene23880:CDS 50.0%
CGATCTCTCAGGCTGTGAAA+AGG - chr7.1:77322217-77322236 None:intergenic 50.0%
GCACGATAGGATTCACCTGT+TGG - chr7.1:77321953-77321972 None:intergenic 50.0%
TGGTTAGGAACCAGTTCAGC+TGG + chr7.1:77318127-77318146 MS.gene23880:CDS 50.0%
TTGCCGACAACCGTGATTGT+TGG - chr7.1:77321244-77321263 None:intergenic 50.0%
! AATGCAGGGACGGACTTGAT+TGG - chr7.1:77319446-77319465 None:intergenic 50.0%
! CAAGGCAGGAGTTCCAGTTT+TGG + chr7.1:77321270-77321289 MS.gene23880:CDS 50.0%
! CGGTGTCAAACATGTGTCAG+TGG + chr7.1:77319895-77319914 MS.gene23880:intron 50.0%
ATAGATGGTCTCCCTGCAGC+AGG + chr7.1:77320747-77320766 MS.gene23880:CDS 55.0%
CACCTGTGTTCCAGCTGAAC+TGG - chr7.1:77318140-77318159 None:intergenic 55.0%
CATGCAGTCAGGCACATTGG+CGG + chr7.1:77320396-77320415 MS.gene23880:intron 55.0%
CATTCACACAGCCGGCACAT+TGG - chr7.1:77321092-77321111 None:intergenic 55.0%
CCATGCAGTCAGCACATCAG+TGG + chr7.1:77320960-77320979 MS.gene23880:intron 55.0%
CCTGCAAACCACACCCTGTA+AGG - chr7.1:77321930-77321949 None:intergenic 55.0%
CTCCCACACATTCACACAGC+CGG - chr7.1:77321100-77321119 None:intergenic 55.0%
CTGCATGCAGTCAGGCACAT+TGG + chr7.1:77320393-77320412 MS.gene23880:intron 55.0%
GAGGTGTGCAACTGCGATTC+TGG - chr7.1:77320878-77320897 None:intergenic 55.0%
GGGCCTGGTTGTTCTTCTCT+TGG + chr7.1:77318054-77318073 MS.gene23880:intron 55.0%
GGTTGTCGGCAAGCTAGTCA+AGG + chr7.1:77321252-77321271 MS.gene23880:CDS 55.0%
TGCCTGACTGCATGCAGTCA+CGG - chr7.1:77320390-77320409 None:intergenic 55.0%
! CCTTACAGGGTGTGGTTTGC+AGG + chr7.1:77321927-77321946 MS.gene23880:CDS 55.0%
! GCCGGCACATTGGTTATCGT+TGG - chr7.1:77321082-77321101 None:intergenic 55.0%
! TGCCGGCTGTGTGAATGTGT+GGG + chr7.1:77321095-77321114 MS.gene23880:intron 55.0%
!! CCACTGATGTGCTGACTGCA+TGG - chr7.1:77320963-77320982 None:intergenic 55.0%
!! GTCGGTGTCGTGTAGGACAT+TGG - chr7.1:77321998-77322017 None:intergenic 55.0%
CCACACCCTGTAAGGCACAG+TGG - chr7.1:77321922-77321941 None:intergenic 60.0%
CCACTGTGCCTTACAGGGTG+TGG + chr7.1:77321919-77321938 MS.gene23880:CDS 60.0%
GCCTGACTGCATGCAGTCAC+GGG - chr7.1:77320389-77320408 None:intergenic 60.0%
GTCGGCAAGCTAGTCAAGGC+AGG + chr7.1:77321256-77321275 MS.gene23880:CDS 60.0%
TCCCGTGACTGCATGCAGTC+AGG + chr7.1:77320385-77320404 MS.gene23880:intron 60.0%
! GGTGTGGTTTGCAGGCCAAC+AGG + chr7.1:77321935-77321954 MS.gene23880:CDS 60.0%
!! GTGCCGGCTGTGTGAATGTG+TGG + chr7.1:77321094-77321113 MS.gene23880:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 77317718 77322290 77317718 ID=MS.gene23880
chr7.1 mRNA 77317718 77322290 77317718 ID=MS.gene23880.t1;Parent=MS.gene23880
chr7.1 exon 77317718 77317961 77317718 ID=MS.gene23880.t1.exon1;Parent=MS.gene23880.t1
chr7.1 CDS 77317718 77317961 77317718 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77318055 77318156 77318055 ID=MS.gene23880.t1.exon2;Parent=MS.gene23880.t1
chr7.1 CDS 77318055 77318156 77318055 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77318804 77318899 77318804 ID=MS.gene23880.t1.exon3;Parent=MS.gene23880.t1
chr7.1 CDS 77318804 77318899 77318804 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77319253 77319345 77319253 ID=MS.gene23880.t1.exon4;Parent=MS.gene23880.t1
chr7.1 CDS 77319253 77319345 77319253 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77319651 77319730 77319651 ID=MS.gene23880.t1.exon5;Parent=MS.gene23880.t1
chr7.1 CDS 77319651 77319730 77319651 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77320064 77320345 77320064 ID=MS.gene23880.t1.exon6;Parent=MS.gene23880.t1
chr7.1 CDS 77320064 77320345 77320064 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77320644 77320768 77320644 ID=MS.gene23880.t1.exon7;Parent=MS.gene23880.t1
chr7.1 CDS 77320644 77320768 77320644 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77321207 77321299 77321207 ID=MS.gene23880.t1.exon8;Parent=MS.gene23880.t1
chr7.1 CDS 77321207 77321299 77321207 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77321839 77321956 77321839 ID=MS.gene23880.t1.exon9;Parent=MS.gene23880.t1
chr7.1 CDS 77321839 77321956 77321839 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
chr7.1 exon 77322141 77322290 77322141 ID=MS.gene23880.t1.exon10;Parent=MS.gene23880.t1
chr7.1 CDS 77322141 77322290 77322141 ID=cds.MS.gene23880.t1;Parent=MS.gene23880.t1
Gene Sequence

>MS.gene23880

ATGTCTTCTCTACTTTGTTGTTCCATTGCAATGTGTGTTGCTGCAATTGTACTTCAACAATGTTCCTTTGCAGTTTCACACCCTAATAAGATCACAAATTTACCTGGTCAACCACATGTTGATTTTCATCAGTTTTCAGGCTATGTAAATGTTGATGATCAAAACAAAAAAGCACTGTTTTTCTACTTTGTTGAAGCTCAGAATGATGATGTTTCCAAACCTCTTGTTCTTTGGCTCAATGGAGGTAGTTTTTACTTTTTGTTTCTTTTATTAGTAACATTGATTCTCATCACTCACATAGATGAAAAATTAAACTTTGTTTCATGTTGTTTTGAAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGGCCATTTAGGCCTAAAGGAGAAGCTTTGGTTAGGAACCAGTTCAGCTGGAACACAGGTGTGTACTTTCATCAATCAAACCTTGTCTACACTAATTTTGTATTAGCACAACTTTTGAAGTTAAATGTCTGTAAATTTTGTCTGGTTTTAGTCCCTATTTTAAAAACTTTTTTACGAAAAGGCCATGCATGGTTTAGTTTATCTAAGCTTATTTACAAGAAGCACTTGTGAGACTGTTTGGAAGAATTTATGGAAACAACTTATGAAATGTCCATAAGTCGTTTCCATAAAGTTCTCGGAGATAGCTTTTGAAAATAGCTTATAGTGTATAGAAAAGCAATTTAACATTATTTTATCTTTTGTTATAGAATTAACCTATACATGAACATTTATATGATTAGTGTTGATTAAGTTGTTTATTCAAACATGGCCAAAATAAGTGTTATTAGCCCATGTATTTAGTCCTTATAGAAGCAAAATAGACACTATCATTGAACGAAGTTTATGTAGGACTAAACTTAAAAAAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAAAAAAAAATTGGATTTGATAAGACTACAAACATATTTAATCTTTTTATTATATTATGGTTTTCCAATTTCCATTAATGTGTTGGTTTCATTTTTAGCTTAACAATGACAAACTCATAACCATTGTGTGTAAATGTGAATTGCAGAGGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGATTTTCTTATTCGACGGATACTTCAACTTATGAAGGTGTAAATGACAAGATTACAGGCAAGTTTTCAATTTTCATCCTTCTATTTGATCTTAGAATAATTCTCAATTCTATTCTTTTGAATGGTCAAGCACCATTTGATTCAAACATTTTTATGTTACTAAAGATAAATTTATTTGTTTCTCTATCTCTCTTTTTCTTTTCTTGTACTCTTTACCTTTTACTAAATTCTGTCATGTCCCTTTCTCCTAAAGTTTTGCATAACATAATGTTATTTCACTATCTACTCTTTTACTTTAATGTTATGTATGTTATGTCCACTGCATAATAGTGTTGTTTTTCTTGCAGACATGTCATGTACCTTAAAGATTTGTCTTGGTTTTCTGAAATTATTTTGTCTTTCTCTTTATAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTGAAGTTCCCTGAATACAGAAACAGAAGCTTGTTCATCGTAGGAGAGAGCTATGCCGGTAAAACAATAACTTATCATTGAATAAATATCCAATTTGCATCAATTTAGTCCCTTACGTTATGAATATTCTAAAATGATCTTGAAATTGTAAAACTCCAATCAAGTCCGTCCCTGCATTGGTAACAATGTCGAAGACACGTTTAAAGGAATCAAGATGAATTTTATTTACATTTTACAATTCTAGGCATCATTTTGAAATATTTAATATTTACTCATTTATTATTACTTTGTTTATTTCTTTGGTGAAGTTGAGATAATAACATAATTATGCAGCTAATGATGTGTTTTGTAATTTATCATTAGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTGTAAGTTAAAGCACAAACTTCCAATTATTCTTCTTTTCTTATTCTTGCTAGTGCTAGGCTTCATCACCTTTTTCTTTATGTTGGTGCCAGCTTTTTCTTTCTGGTTTATGTAAAAGTAACTGAAGAAAACTAAATACTACTAAAATTTAGATCGAAGTCATGTCCGGTGTCAAACATGTGTCAGTGGTCCAACACGATATTGACATGTGTGACATGCGGTTACATTCAATCACTTTTTATTTTCTTAATTTACTACAAGTGTTTACGTGTCAATGTGAGTATCGTGTTTGTATCAGTGCTTTTGTTGTAGCTAACGAGTTTGCTTTCATGCAGCTTGGTAATCCAGTTCTAGAATTTGCAACAGACTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCATGGATTGATCTCAGACTTAACATTTAAAATGTTCACTTCAGTTTGTAACTATTCAAGATATGTGAGAGAATACTATAACGGTGCCGTTTCTCCCATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATACTCAGGTGAGTTTATCATCGGATCTGGATTGTGCGCTATCACAATCCCGTGACTGCATGCAGTCAGGCACATTGGCGGTTGTTTAGTCAAATATCACATAGTCCAAATTTGAAGTTTGTATTTTAGATTTTTAAAATAATGCAAAAAAATGTATGCGTTGAAATCTAGACCGCACAATCTTGATCGATCAACCACCAATGTATCTGAATGCACGGATGTCCTTCAATTTCAGTTTTTACAATCAAGTTTAAAGTACTGAGGTATGACATGATGCTCGTGTTTTTGTTGTCATTTGTCAAATAGCAAGTGACTGAAACGGTTGATGTATGCGTTGAAGACGAGACTGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACATGCACATCTGATTGGAGTACATAGATGGTCTCCCTGCAGCAGGTAATTCTCTTTGTATAATGTGCCTACAAGAAACATGATTTTAAATTGCGGTTGCAATTGCAGTCGCGATACAGTTACAAAATATCTTCAAATCTGTATTCTGCGACCAGAATCGCAGTTGCACACCTCAATTTAAACCTTATTGCTGTGCCTTGCCTCTTGAATTTGAATTGCCTGCAGTCAACACAATTCCATGCAGTCAGCACATCAGTGGTCGTTAGATTGGATTAAACGATTCATATTTCAAGCTCTTTATTTAGATTATCTAAAAAAACAAATTCTACATTGAAATCTGGATCGTCCGAACAGTCCAACGATAACCAATGTGCCGGCTGTGTGAATGTGTGGGAGTTCCTTTCTTATCATAAAACATGTTTTTGTTTTTTATAGTACATATATAAGACAGAAATACTTACAATTTTGCTTTATGTCAATCAGTGTGTTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTCGGCAAGCTAGTCAAGGCAGGAGTTCCAGTTTTGGTCTACAGGTATGTGCATTCATCATGTCTTACTTATTACATGTTTTTGGAATAAAGATCTTATAGTTTTTTTTAAGTTTTTATCATAACATAATTGCTTGTTTTAGTGGCTGGATACACTTGTAAAAGTAACTTGTGACTTTTACTGGCCTCAGAAGAATAGTTTGTGAAAATAAGCTCTTTAGAATAATCTTGTGAATAGGTACTTACTTATTAATGACGCGTCCAAAAGATGTTTTCAACCTATTTTCATGAGCTCTCCAATATTGTATATGAAAATAAATTTTATACCTCATGAAAATACTTTGACTTTATTTTATCTTTTGCACAAAAATAACTTGCATCTAAACCCTTATATGATAAGCGCTTATGTTATAAGTGCTTAATTAAGTTATTCATCTAAGCAAAGCCTAATTAAGTAATCCATTAAACTTGGTCCTTAGTCCAGATGTAAATTTAACTTTTCACTTAGCATAAACTAGACCATGTCTAGTTGTCTACATATAAGCCTTCATAAATCATAATTAATTGAAAAATTTGTTTTGCAGTGGTGATCAGGATTCAGTTATTCCATTGACTGGAAGTAGAACTCTAGTACATCAATTGGCAAAACAGCTGAGAATGAATACCACTGTGCCTTACAGGGTGTGGTTTGCAGGCCAACAGGTGAATCCTATCGTGCTTTGTTGATATTGAACATGTGTCCAATGTCCTACACGACACCGACACATATAGTTAAATGCCCTTATTATATTTTTTGTTCAAAATATTAATGGTATCGACGTGTTAGAGTCATGTCTCGTGTATGTGTCTATGTCGTGCTTAAGAATAATCTCGCTCTTATTTTCAGGTTGGTGGTTGGACTCAAGTTTATGGCAACATACTATCATTTGCAACAGTTAGGGGAGCATCACATGAAGTACCCTTTTCACAGCCTGAGAGATCGCTTGTGCTGTTTAAGTCTTTCTTAGAAGGAAGACCTCTGCCAGAAGAATTTTGA

Protein sequence

>MS.gene23880.t1

MSSLLCCSIAMCVAAIVLQQCSFAVSHPNKITNLPGQPHVDFHQFSGYVNVDDQNKKALFFYFVEAQNDDVSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNTEANMLYLESPIGVGFSYSTDTSTYEGVNDKITARDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNTQQVTETVDVCVEDETVNYLNRKDVQSALHAHLIGVHRWSPCSSVLDYELRDLEIPTITVVGKLVKAGVPVLVYSGDQDSVIPLTGSRTLVHQLAKQLRMNTTVPYRVWFAGQQVGGWTQVYGNILSFATVRGASHEVPFSQPERSLVLFKSFLEGRPLPEEF