Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07488.t1 | XP_013468853.1 | 76.1 | 473 | 33 | 3 | 1 | 393 | 1 | 473 | 1.60E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07488.t1 | O23086 | 51.0 | 388 | 159 | 6 | 5 | 364 | 8 | 392 | 2.0e-105 | 384.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07488.t1 | A0A072VXW6 | 76.1 | 473 | 33 | 3 | 1 | 393 | 1 | 473 | 1.2e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene07488 | 0.805127 | 1.55E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene07488 | 0.851115 | 1.10E-60 | -1.69E-46 |
| MS.gene051844 | MS.gene07488 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene07488 | 0.859043 | 5.43E-63 | -1.69E-46 |
| MS.gene052212 | MS.gene07488 | 0.806312 | 8.75E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene07488 | 0.820105 | 8.18E-53 | -1.69E-46 |
| MS.gene05244 | MS.gene07488 | 0.811978 | 5.34E-51 | -1.69E-46 |
| MS.gene052706 | MS.gene07488 | 0.81068 | 1.02E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene07488 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene07488 | 0.815721 | 8.00E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene07488 | 0.829637 | 4.61E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene07488 | 0.832627 | 8.49E-56 | -1.69E-46 |
| MS.gene055240 | MS.gene07488 | 0.834487 | 2.91E-56 | -1.69E-46 |
| MS.gene056218 | MS.gene07488 | 0.805666 | 1.20E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene07488 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene07488 | 0.828063 | 1.11E-54 | -1.69E-46 |
| MS.gene056920 | MS.gene07488 | 0.822898 | 1.85E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene07488 | 0.820444 | 6.84E-53 | -1.69E-46 |
| MS.gene057261 | MS.gene07488 | 0.805649 | 1.21E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene07488 | 0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene057820 | MS.gene07488 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene07488 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene07488 | 0.802613 | 5.16E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene07488 | 0.829961 | 3.84E-55 | -1.69E-46 |
| MS.gene059955 | MS.gene07488 | 0.881816 | 1.75E-70 | -1.69E-46 |
| MS.gene060087 | MS.gene07488 | 0.822908 | 1.84E-53 | -1.69E-46 |
| MS.gene060405 | MS.gene07488 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene061092 | MS.gene07488 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene061094 | MS.gene07488 | 0.806062 | 9.87E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07488 | MS.gene61659 | PPI |
| MS.gene07488 | MS.gene96117 | PPI |
| MS.gene07488 | MS.gene66665 | PPI |
| MS.gene07488 | MS.gene044738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07488.t1 | MTR_1g077660 | 89.835 | 364 | 35 | 1 | 1 | 364 | 1 | 362 | 0.0 | 681 |
| MS.gene07488.t1 | MTR_1g077660 | 79.412 | 68 | 14 | 0 | 326 | 393 | 406 | 473 | 6.49e-27 | 112 |
| MS.gene07488.t1 | MTR_1g077670 | 86.607 | 336 | 44 | 1 | 4 | 338 | 10 | 345 | 0.0 | 617 |
| MS.gene07488.t1 | MTR_1g077670 | 65.217 | 69 | 23 | 1 | 325 | 393 | 417 | 484 | 6.78e-18 | 85.5 |
| MS.gene07488.t1 | MTR_7g106260 | 52.258 | 310 | 143 | 2 | 19 | 323 | 11 | 320 | 4.35e-104 | 316 |
| MS.gene07488.t1 | MTR_4g051575 | 51.195 | 293 | 137 | 2 | 37 | 326 | 35 | 324 | 1.06e-103 | 315 |
| MS.gene07488.t1 | MTR_2g087288 | 48.148 | 297 | 150 | 2 | 46 | 338 | 37 | 333 | 3.71e-97 | 297 |
| MS.gene07488.t1 | MTR_1g115140 | 41.159 | 345 | 191 | 4 | 27 | 361 | 18 | 360 | 2.04e-91 | 285 |
| MS.gene07488.t1 | MTR_1g115175 | 40.974 | 349 | 193 | 5 | 23 | 361 | 10 | 355 | 1.43e-88 | 278 |
| MS.gene07488.t1 | MTR_2g087285 | 45.017 | 291 | 155 | 2 | 34 | 319 | 25 | 315 | 1.66e-82 | 259 |
| MS.gene07488.t1 | MTR_1g115190 | 40.974 | 349 | 194 | 5 | 23 | 361 | 11 | 357 | 2.61e-80 | 256 |
| MS.gene07488.t1 | MTR_5g014310 | 41.824 | 318 | 176 | 4 | 42 | 352 | 53 | 368 | 3.21e-79 | 254 |
| MS.gene07488.t1 | MTR_4g098570 | 38.070 | 373 | 210 | 3 | 26 | 389 | 29 | 389 | 7.58e-79 | 252 |
| MS.gene07488.t1 | MTR_7g094770 | 37.092 | 337 | 202 | 4 | 50 | 384 | 60 | 388 | 1.91e-72 | 233 |
| MS.gene07488.t1 | MTR_4g098610 | 38.843 | 363 | 199 | 3 | 26 | 382 | 29 | 374 | 5.28e-72 | 234 |
| MS.gene07488.t1 | MTR_8g104110 | 33.967 | 368 | 221 | 9 | 34 | 386 | 51 | 411 | 1.67e-65 | 219 |
| MS.gene07488.t1 | MTR_8g104130 | 35.224 | 335 | 205 | 5 | 43 | 375 | 56 | 380 | 3.24e-64 | 215 |
| MS.gene07488.t1 | MTR_6g084680 | 33.894 | 357 | 216 | 6 | 21 | 364 | 63 | 412 | 2.85e-63 | 213 |
| MS.gene07488.t1 | MTR_4g051575 | 49.733 | 187 | 90 | 2 | 144 | 326 | 4 | 190 | 1.21e-58 | 194 |
| MS.gene07488.t1 | MTR_8g104120 | 33.429 | 350 | 203 | 8 | 34 | 365 | 47 | 384 | 1.67e-57 | 197 |
| MS.gene07488.t1 | MTR_1g111250 | 30.571 | 350 | 208 | 6 | 40 | 357 | 68 | 414 | 1.44e-55 | 192 |
| MS.gene07488.t1 | MTR_0710s0020 | 47.977 | 173 | 86 | 2 | 23 | 191 | 11 | 183 | 1.24e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07488.t1 | AT4G00910 | 52.660 | 376 | 159 | 5 | 5 | 364 | 8 | 380 | 6.87e-140 | 407 |
| MS.gene07488.t1 | AT1G08440 | 49.164 | 299 | 146 | 1 | 36 | 328 | 3 | 301 | 9.28e-105 | 318 |
| MS.gene07488.t1 | AT2G27240 | 47.492 | 299 | 151 | 2 | 36 | 328 | 3 | 301 | 1.42e-97 | 299 |
| MS.gene07488.t1 | AT1G08430 | 47.682 | 302 | 149 | 2 | 36 | 328 | 3 | 304 | 1.39e-96 | 297 |
| MS.gene07488.t1 | AT3G11680 | 48.544 | 309 | 158 | 1 | 18 | 325 | 10 | 318 | 2.31e-95 | 294 |
| MS.gene07488.t1 | AT3G11680 | 48.544 | 309 | 158 | 1 | 18 | 325 | 8 | 316 | 2.43e-95 | 294 |
| MS.gene07488.t1 | AT2G27240 | 44.000 | 325 | 150 | 2 | 36 | 328 | 3 | 327 | 2.23e-94 | 292 |
| MS.gene07488.t1 | AT4G17970 | 39.104 | 335 | 198 | 3 | 21 | 352 | 15 | 346 | 3.88e-86 | 272 |
| MS.gene07488.t1 | AT5G46600 | 37.853 | 354 | 199 | 3 | 32 | 376 | 28 | 369 | 3.27e-85 | 269 |
| MS.gene07488.t1 | AT5G46610 | 35.385 | 390 | 231 | 3 | 9 | 389 | 4 | 381 | 2.54e-83 | 264 |
| MS.gene07488.t1 | AT5G46610 | 32.275 | 378 | 214 | 3 | 9 | 380 | 4 | 345 | 8.99e-70 | 228 |
| MS.gene07488.t1 | AT1G18420 | 34.426 | 366 | 217 | 6 | 30 | 374 | 67 | 430 | 1.00e-66 | 222 |
| MS.gene07488.t1 | AT3G18440 | 34.400 | 375 | 218 | 9 | 23 | 374 | 55 | 424 | 2.62e-65 | 219 |
| MS.gene07488.t1 | AT1G18420 | 34.384 | 349 | 206 | 6 | 47 | 374 | 1 | 347 | 7.05e-64 | 213 |
| MS.gene07488.t1 | AT5G46610 | 31.481 | 378 | 194 | 3 | 9 | 380 | 4 | 322 | 1.22e-62 | 209 |
| MS.gene07488.t1 | AT2G17470 | 35.333 | 300 | 177 | 7 | 34 | 319 | 18 | 314 | 6.90e-57 | 195 |
| MS.gene07488.t1 | AT2G17470 | 35.333 | 300 | 177 | 7 | 34 | 319 | 40 | 336 | 1.02e-56 | 195 |
| MS.gene07488.t1 | AT1G68600 | 34.951 | 309 | 185 | 6 | 43 | 338 | 45 | 350 | 2.27e-55 | 191 |
| MS.gene07488.t1 | AT1G25480 | 32.033 | 359 | 217 | 8 | 43 | 388 | 56 | 400 | 1.02e-52 | 184 |
| MS.gene07488.t1 | AT4G17585 | 43.956 | 91 | 47 | 3 | 21 | 108 | 15 | 104 | 1.52e-16 | 76.6 |
Find 74 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCATTGATGCTCTTAT+TGG | 0.158685 | 1.2:-63133169 | MS.gene07488:CDS |
| AGAATTTCCACTATTATAAT+TGG | 0.174482 | 1.2:-63133896 | MS.gene07488:CDS |
| TGGAAGCAATATCTTAAAAT+TGG | 0.274268 | 1.2:-63133214 | MS.gene07488:CDS |
| TCCTCATCATTCTGTTGTTC+TGG | 0.283572 | 1.2:+63132554 | None:intergenic |
| TTCAGGCTAATTTAGCTAGA+TGG | 0.290212 | 1.2:-63133273 | MS.gene07488:intron |
| GCACGACTGTTCGCCCTGTT+TGG | 0.294097 | 1.2:-63133850 | MS.gene07488:CDS |
| AAGATTTATACCAACTATAA+AGG | 0.295645 | 1.2:-63134017 | MS.gene07488:CDS |
| CAATGATTCTTCTGTTGCTT+TGG | 0.297791 | 1.2:+63133427 | None:intergenic |
| CTTCCAACACCATCATATAA+AGG | 0.302727 | 1.2:+63134968 | None:intergenic |
| CACGACTGTTCGCCCTGTTT+GGG | 0.329652 | 1.2:-63133849 | MS.gene07488:CDS |
| GTTAGACTCACTTGCTGCTT+GGG | 0.330664 | 1.2:+63133484 | None:intergenic |
| AATTGATGAATTGTTTGATT+TGG | 0.335580 | 1.2:-63133927 | MS.gene07488:CDS |
| GTTGTCTGTTGAATGTTGTT+TGG | 0.338958 | 1.2:+63132586 | None:intergenic |
| AGTGAGGCTCCAACAATTAC+AGG | 0.347390 | 1.2:+63134521 | None:intergenic |
| TTCAGTTTGGTTTCAATATC+CGG | 0.352067 | 1.2:-63133956 | MS.gene07488:CDS |
| ATTTATCCTCACTTTCAGTT+TGG | 0.369853 | 1.2:-63133969 | MS.gene07488:CDS |
| TTCTAGCCTTTGGTGTACAT+TGG | 0.372115 | 1.2:-63134574 | MS.gene07488:CDS |
| TCTAGCCTTTGGTGTACATT+GGG | 0.373912 | 1.2:-63134573 | MS.gene07488:CDS |
| CTTGCCGGGCTTCTAGCCTT+TGG | 0.375772 | 1.2:-63134584 | MS.gene07488:CDS |
| ATATGTGGAACTACCCTTGC+CGG | 0.376919 | 1.2:-63134599 | MS.gene07488:CDS |
| TGGTCTAGAACTCTATGTTT+TGG | 0.392947 | 1.2:-63133825 | MS.gene07488:CDS |
| TGTTAGACTCACTTGCTGCT+TGG | 0.402132 | 1.2:+63133483 | None:intergenic |
| CAATTCATCAATTCTATAAC+CGG | 0.413490 | 1.2:+63133937 | None:intergenic |
| AGTTCTAGACCAGCCCAAAC+AGG | 0.414800 | 1.2:+63133836 | None:intergenic |
| ACTGTTCGCCCTGTTTGGGC+TGG | 0.434664 | 1.2:-63133845 | MS.gene07488:CDS |
| TGAAGTTCCAATTATAATAG+TGG | 0.434981 | 1.2:+63133889 | None:intergenic |
| CAAAGCAACAGAAGAATCAT+TGG | 0.439510 | 1.2:-63133426 | MS.gene07488:intron |
| TTTCACAAATTTGCACAACT+TGG | 0.440882 | 1.2:+63135090 | None:intergenic |
| TTCATCCATTGTTTAAAAGT+AGG | 0.446047 | 1.2:-63135031 | MS.gene07488:CDS |
| TACTTGAAACCTTTATATGA+TGG | 0.450489 | 1.2:-63134977 | MS.gene07488:CDS |
| TCAGGCTAATTTAGCTAGAT+GGG | 0.451798 | 1.2:-63133272 | MS.gene07488:intron |
| TCAAAACGAGCCTTTATAGT+TGG | 0.456472 | 1.2:+63134007 | None:intergenic |
| GCTAGATGGGAGCCTGCTCA+TGG | 0.466832 | 1.2:-63133259 | MS.gene07488:CDS |
| GAAATTCCAGCTCTCTTCCA+TGG | 0.473583 | 1.2:+63135148 | None:intergenic |
| CAATGGGAACCTGTAATTGT+TGG | 0.475128 | 1.2:-63134530 | MS.gene07488:CDS |
| TGACTAATGAAAAGGTAGAA+TGG | 0.476764 | 1.2:-63135192 | MS.gene07488:CDS |
| AAGCTGACCTTGCAAAGAGT+TGG | 0.485113 | 1.2:+63133778 | None:intergenic |
| CATTGGGTTGCTAGTAAAGC+AGG | 0.488274 | 1.2:-63134557 | MS.gene07488:CDS |
| ATTAAAGATGACTAATGAAA+AGG | 0.488687 | 1.2:-63135200 | None:intergenic |
| AAATTGAAACGCCCATGAGC+AGG | 0.504173 | 1.2:+63133247 | None:intergenic |
| TCCATGGACCATCTTCTACC+TGG | 0.506733 | 1.2:+63135164 | None:intergenic |
| AAAAGTAGGAATAGCACTTA+CGG | 0.507573 | 1.2:-63135017 | MS.gene07488:CDS |
| CTAGTAAAGCAGGAGATCAA+TGG | 0.509667 | 1.2:-63134547 | MS.gene07488:CDS |
| CTGGAATTTCTTGCGGCATG+TGG | 0.511954 | 1.2:-63135135 | MS.gene07488:CDS |
| TAGTAAAGCAGGAGATCAAT+GGG | 0.520063 | 1.2:-63134546 | MS.gene07488:CDS |
| GATGGTCCATGGAAGAGAGC+TGG | 0.527590 | 1.2:-63135154 | MS.gene07488:CDS |
| AAAAGTGTAAACAGAATATG+TGG | 0.528989 | 1.2:-63134614 | MS.gene07488:CDS |
| TACACCAAAGGCTAGAAGCC+CGG | 0.532274 | 1.2:+63134580 | None:intergenic |
| AAACCTTTATATGATGGTGT+TGG | 0.534000 | 1.2:-63134971 | MS.gene07488:CDS |
| TGGAGAATCCAGGTAGAAGA+TGG | 0.550522 | 1.2:-63135172 | MS.gene07488:CDS |
| TATGTGGAACTACCCTTGCC+GGG | 0.557506 | 1.2:-63134598 | MS.gene07488:CDS |
| TGGTATAAATCTTGAAAATG+TGG | 0.560638 | 1.2:+63134027 | None:intergenic |
| TGGAATTTCTTGCGGCATGT+GGG | 0.562370 | 1.2:-63135134 | MS.gene07488:CDS |
| AAAGGCTAGAAGCCCGGCAA+GGG | 0.569854 | 1.2:+63134586 | None:intergenic |
| CTAGATGGGAGCCTGCTCAT+GGG | 0.572292 | 1.2:-63133258 | MS.gene07488:CDS |
| TCCAGGTAGAAGATGGTCCA+TGG | 0.576984 | 1.2:-63135165 | MS.gene07488:CDS |
| AAAGGTAGAATGGAGAATCC+AGG | 0.582137 | 1.2:-63135182 | MS.gene07488:CDS |
| GTTCTAGACCAGCCCAAACA+GGG | 0.583021 | 1.2:+63133837 | None:intergenic |
| GTAGTCTTTGAGTACACTGC+CGG | 0.588668 | 1.2:-63134914 | MS.gene07488:intron |
| GTTGTCACCTACTTTCATAG+AGG | 0.589780 | 1.2:+63132928 | None:intergenic |
| TACTGAAATTGTAGCTCGTG+TGG | 0.591275 | 1.2:-63132684 | MS.gene07488:intron |
| AAACTCGCCAACTCTTTGCA+AGG | 0.594774 | 1.2:-63133785 | MS.gene07488:intron |
| AGCAGAACCTCTATGAAAGT+AGG | 0.598229 | 1.2:-63132935 | MS.gene07488:intron |
| CAAAGGCTAGAAGCCCGGCA+AGG | 0.602133 | 1.2:+63134585 | None:intergenic |
| TTGAAACCAAACTGAAAGTG+AGG | 0.606576 | 1.2:+63133963 | None:intergenic |
| TTGCATAAATTCAGAAAACA+AGG | 0.607863 | 1.2:-63133146 | MS.gene07488:intron |
| AAGAGAGCTGGAATTTCTTG+CGG | 0.610493 | 1.2:-63135142 | MS.gene07488:CDS |
| AAGAGTTGGCGAGTTTGTCG+AGG | 0.617634 | 1.2:+63133792 | None:intergenic |
| AATCTTCATGATGTCATCTG+AGG | 0.633279 | 1.2:+63132961 | None:intergenic |
| GTACTCAAAGACTACAATCA+CGG | 0.651714 | 1.2:+63134922 | None:intergenic |
| AGCAACCCAATGTACACCAA+AGG | 0.653502 | 1.2:+63134568 | None:intergenic |
| GTGTTGGAAGAAATGCTATG+TGG | 0.665026 | 1.2:-63134955 | MS.gene07488:CDS |
| TGTTGGAAGAAATGCTATGT+GGG | 0.671135 | 1.2:-63134954 | MS.gene07488:CDS |
| ACCAGAACAACAGAATGATG+AGG | 0.679230 | 1.2:-63132555 | MS.gene07488:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAATTAATTAATTA+AGG | + | chr1.2:63134630-63134611 | None:intergenic | 0.0% |
| !!! | AAATATTTGATTAGTTTTTA+GGG | + | chr1.2:63134089-63134108 | None:intergenic | 10.0% |
| !! | AATAATAGAATTAATTCAAG+TGG | - | chr1.2:63134990-63135009 | MS.gene07488:CDS | 15.0% |
| !! | ACTTGAATTAATTCTATTAT+TGG | + | chr1.2:63134991-63135010 | None:intergenic | 15.0% |
| !! | CCCTTAAATTAATTTATAAT+CGG | - | chr1.2:63134350-63134369 | MS.gene07488:intron | 15.0% |
| !! | CCGATTATAAATTAATTTAA+GGG | + | chr1.2:63134353-63134372 | None:intergenic | 15.0% |
| !! | CTTGAATTAATTCTATTATT+GGG | + | chr1.2:63134990-63135009 | None:intergenic | 15.0% |
| !! | TAGTCATGTTATATAAATTA+GGG | + | chr1.2:63134405-63134424 | None:intergenic | 15.0% |
| !! | TCCGATTATAAATTAATTTA+AGG | + | chr1.2:63134354-63134373 | None:intergenic | 15.0% |
| !! | TTAGTCATGTTATATAAATT+AGG | + | chr1.2:63134406-63134425 | None:intergenic | 15.0% |
| !!! | AAGTCATTACTATTATTTTT+TGG | - | chr1.2:63134636-63134655 | MS.gene07488:intron | 15.0% |
| !!! | ATTAATATTTTGTTGATTTC+AGG | - | chr1.2:63134426-63134445 | MS.gene07488:intron | 15.0% |
| !!! | CAAATATTTGATTAGTTTTT+AGG | + | chr1.2:63134090-63134109 | None:intergenic | 15.0% |
| !!! | TAACGACTAAATTTTTTTAA+GGG | + | chr1.2:63132934-63132953 | None:intergenic | 15.0% |
| !! | AAGATTTATACCAACTATAA+AGG | - | chr1.2:63133699-63133718 | MS.gene07488:intron | 20.0% |
| !! | AATTGATGAATTGTTTGATT+TGG | - | chr1.2:63133789-63133808 | MS.gene07488:CDS | 20.0% |
| !! | AGAATTTCCACTATTATAAT+TGG | - | chr1.2:63133820-63133839 | MS.gene07488:CDS | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | chr1.2:63133360-63133379 | MS.gene07488:intron | 20.0% |
| !! | GATGTATCAAGTTAAAAATT+TGG | - | chr1.2:63133395-63133414 | MS.gene07488:intron | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr1.2:63133359-63133378 | MS.gene07488:intron | 20.0% |
| !!! | AAATTTTTTTAAGGGTGTAA+CGG | + | chr1.2:63132926-63132945 | None:intergenic | 20.0% |
| !!! | ATTAGGGTTAAATATGTTTT+TGG | + | chr1.2:63134389-63134408 | None:intergenic | 20.0% |
| !!! | GTAACGACTAAATTTTTTTA+AGG | + | chr1.2:63132935-63132954 | None:intergenic | 20.0% |
| !!! | TATACTATATGTTAATTTGC+AGG | - | chr1.2:63133066-63133085 | MS.gene07488:intron | 20.0% |
| ! | ACACAAAAAAATGCAAAAGA+AGG | - | chr1.2:63134943-63134962 | MS.gene07488:CDS | 25.0% |
| ! | ATATTAAATGCACAAGTCTT+CGG | + | chr1.2:63133969-63133988 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr1.2:63133358-63133377 | None:intergenic | 25.0% |
| ! | CAAATTTGTGAAAAAAGCTT+GGG | - | chr1.2:63132636-63132655 | MS.gene07488:CDS | 25.0% |
| ! | CAATTCATCAATTCTATAAC+CGG | + | chr1.2:63133782-63133801 | None:intergenic | 25.0% |
| ! | CATGTTAAAGCAATTAAAAG+TGG | + | chr1.2:63134041-63134060 | None:intergenic | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | chr1.2:63133363-63133382 | None:intergenic | 25.0% |
| ! | CCTAAATTTCTCTTGTAAAT+AGG | - | chr1.2:63133442-63133461 | MS.gene07488:CDS | 25.0% |
| ! | CCTATTTACAAGAGAAATTT+AGG | + | chr1.2:63133445-63133464 | None:intergenic | 25.0% |
| ! | GAGTCTAACAAAAATTTGAT+GGG | - | chr1.2:63134246-63134265 | MS.gene07488:intron | 25.0% |
| ! | GTTTCAAAATTTAACTGCAA+GGG | + | chr1.2:63132878-63132897 | None:intergenic | 25.0% |
| ! | TACCTATATACTTAATCTTG+AGG | - | chr1.2:63134693-63134712 | MS.gene07488:intron | 25.0% |
| ! | TACTTGAAACCTTTATATGA+TGG | - | chr1.2:63132739-63132758 | MS.gene07488:intron | 25.0% |
| ! | TATAATTATTGGTACGTATG+TGG | - | chr1.2:63134180-63134199 | MS.gene07488:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | chr1.2:63133422-63133441 | None:intergenic | 25.0% |
| ! | TGAAGTTCCAATTATAATAG+TGG | + | chr1.2:63133830-63133849 | None:intergenic | 25.0% |
| ! | TGAGTCTAACAAAAATTTGA+TGG | - | chr1.2:63134245-63134264 | MS.gene07488:intron | 25.0% |
| ! | TGGAAGCAATATCTTAAAAT+TGG | - | chr1.2:63134502-63134521 | MS.gene07488:intron | 25.0% |
| ! | TGGTATAAATCTTGAAAATG+TGG | + | chr1.2:63133692-63133711 | None:intergenic | 25.0% |
| ! | TTCATCCATTGTTTAAAAGT+AGG | - | chr1.2:63132685-63132704 | MS.gene07488:intron | 25.0% |
| ! | TTGCATAAATTCAGAAAACA+AGG | - | chr1.2:63134570-63134589 | MS.gene07488:CDS | 25.0% |
| !! | AAAAGTGTAAACAGAATATG+TGG | - | chr1.2:63133102-63133121 | MS.gene07488:intron | 25.0% |
| !! | AAACAATGGATGAATTTTCT+AGG | + | chr1.2:63132679-63132698 | None:intergenic | 25.0% |
| !! | AACAATGGATGAATTTTCTA+GGG | + | chr1.2:63132678-63132697 | None:intergenic | 25.0% |
| !! | TAAATTAATTTAAGGGTGCA+TGG | + | chr1.2:63134346-63134365 | None:intergenic | 25.0% |
| !!! | ATTTTAAGATATTGCTTCCA+TGG | + | chr1.2:63134502-63134521 | None:intergenic | 25.0% |
| !!! | ATTTTATTTAATACTCCCTC+CGG | - | chr1.2:63133336-63133355 | MS.gene07488:intron | 25.0% |
| !!! | CTATTCCTACTTTTAAACAA+TGG | + | chr1.2:63132693-63132712 | None:intergenic | 25.0% |
| !!! | CTTCACATTTTAACAAAGTA+TGG | + | chr1.2:63132841-63132860 | None:intergenic | 25.0% |
| !!! | TAATAAATTCTGAAGCTCTA+GGG | + | chr1.2:63134908-63134927 | None:intergenic | 25.0% |
| !!! | TTAATAAATTCTGAAGCTCT+AGG | + | chr1.2:63134909-63134928 | None:intergenic | 25.0% |
| !!! | TTTGCATTTTTTTGTGTGTT+TGG | + | chr1.2:63134940-63134959 | None:intergenic | 25.0% |
| !!! | TTTTAAGATATTGCTTCCAT+GGG | + | chr1.2:63134501-63134520 | None:intergenic | 25.0% |
| AAAAGTAGGAATAGCACTTA+CGG | - | chr1.2:63132699-63132718 | MS.gene07488:intron | 30.0% | |
| ATTTATCCTCACTTTCAGTT+TGG | - | chr1.2:63133747-63133766 | MS.gene07488:intron | 30.0% | |
| ATTTCTCTTGTAAATAGGAC+CGG | - | chr1.2:63133447-63133466 | MS.gene07488:CDS | 30.0% | |
| CAAAAAAATGCAAAAGAAGG+TGG | - | chr1.2:63134946-63134965 | MS.gene07488:CDS | 30.0% | |
| CGTTTCAAAATTTAACTGCA+AGG | + | chr1.2:63132879-63132898 | None:intergenic | 30.0% | |
| GCAAATTTGTGAAAAAAGCT+TGG | - | chr1.2:63132635-63132654 | MS.gene07488:CDS | 30.0% | |
| GCATGGTAATTAAAATCTCT+AGG | + | chr1.2:63134329-63134348 | None:intergenic | 30.0% | |
| TATAGACACACACACATATA+TGG | + | chr1.2:63132963-63132982 | None:intergenic | 30.0% | |
| TGACTAATGAAAAGGTAGAA+TGG | - | chr1.2:63132524-63132543 | MS.gene07488:CDS | 30.0% | |
| TGCCTCAAGATTAAGTATAT+AGG | + | chr1.2:63134698-63134717 | None:intergenic | 30.0% | |
| TTTACCTAGTAGAAAAAGTG+AGG | + | chr1.2:63133214-63133233 | None:intergenic | 30.0% | |
| TTTCACAAATTTGCACAACT+TGG | + | chr1.2:63132629-63132648 | None:intergenic | 30.0% | |
| ! | AAACCTTTATATGATGGTGT+TGG | - | chr1.2:63132745-63132764 | MS.gene07488:intron | 30.0% |
| ! | GGTAATTAAAATCTCTAGGA+AGG | + | chr1.2:63134325-63134344 | None:intergenic | 30.0% |
| ! | TTCAGTTTGGTTTCAATATC+CGG | - | chr1.2:63133760-63133779 | MS.gene07488:intron | 30.0% |
| !! | TATTTCTGGTATTTACGTGT+CGG | - | chr1.2:63133480-63133499 | MS.gene07488:CDS | 30.0% |
| !!! | ATAAAGGCTCGTTTTGATTA+TGG | - | chr1.2:63133715-63133734 | MS.gene07488:intron | 30.0% |
| !!! | TTTAACTGCAAGGGTATTTT+AGG | + | chr1.2:63132869-63132888 | None:intergenic | 30.0% |
| AAAAATCAAGACACTCCAGA+TGG | - | chr1.2:63135188-63135207 | MS.gene07488:CDS | 35.0% | |
| AATCTTCATGATGTCATCTG+AGG | + | chr1.2:63134758-63134777 | None:intergenic | 35.0% | |
| CAAAGCAACAGAAGAATCAT+TGG | - | chr1.2:63134290-63134309 | MS.gene07488:intron | 35.0% | |
| CTTCCAACACCATCATATAA+AGG | + | chr1.2:63132751-63132770 | None:intergenic | 35.0% | |
| GTACTCAAAGACTACAATCA+CGG | + | chr1.2:63132797-63132816 | None:intergenic | 35.0% | |
| GTTGTCTGTTGAATGTTGTT+TGG | + | chr1.2:63135133-63135152 | None:intergenic | 35.0% | |
| TACACACTAGTTATCGATCT+TGG | - | chr1.2:63133614-63133633 | MS.gene07488:intron | 35.0% | |
| TAGTAAAGCAGGAGATCAAT+GGG | - | chr1.2:63133170-63133189 | MS.gene07488:CDS | 35.0% | |
| TCAAAACGAGCCTTTATAGT+TGG | + | chr1.2:63133712-63133731 | None:intergenic | 35.0% | |
| TCAGGCTAATTTAGCTAGAT+GGG | - | chr1.2:63134444-63134463 | MS.gene07488:intron | 35.0% | |
| TGTTGGAAGAAATGCTATGT+GGG | - | chr1.2:63132762-63132781 | MS.gene07488:intron | 35.0% | |
| TTCAGGCTAATTTAGCTAGA+TGG | - | chr1.2:63134443-63134462 | MS.gene07488:intron | 35.0% | |
| TTGAAACCAAACTGAAAGTG+AGG | + | chr1.2:63133756-63133775 | None:intergenic | 35.0% | |
| ! | CAATGATTCTTCTGTTGCTT+TGG | + | chr1.2:63134292-63134311 | None:intergenic | 35.0% |
| ! | TCTTGCATTGATGCTCTTAT+TGG | - | chr1.2:63134547-63134566 | MS.gene07488:CDS | 35.0% |
| !! | TGGTCTAGAACTCTATGTTT+TGG | - | chr1.2:63133891-63133910 | MS.gene07488:CDS | 35.0% |
| !!! | AGAACTCTATGTTTTGGTCA+CGG | - | chr1.2:63133897-63133916 | MS.gene07488:CDS | 35.0% |
| AAAGGTAGAATGGAGAATCC+AGG | - | chr1.2:63132534-63132553 | MS.gene07488:CDS | 40.0% | |
| AAGAGAGCTGGAATTTCTTG+CGG | - | chr1.2:63132574-63132593 | MS.gene07488:CDS | 40.0% | |
| ACCAGAACAACAGAATGATG+AGG | - | chr1.2:63135161-63135180 | MS.gene07488:CDS | 40.0% | |
| AGCAGAACCTCTATGAAAGT+AGG | - | chr1.2:63134781-63134800 | MS.gene07488:intron | 40.0% | |
| CAATGGGAACCTGTAATTGT+TGG | - | chr1.2:63133186-63133205 | MS.gene07488:CDS | 40.0% | |
| CTAGTAAAGCAGGAGATCAA+TGG | - | chr1.2:63133169-63133188 | MS.gene07488:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr1.2:63133354-63133373 | None:intergenic | 40.0% | |
| GTGAAAAAAGCTTGGGAGAT+TGG | - | chr1.2:63132643-63132662 | MS.gene07488:CDS | 40.0% | |
| GTGTTGGAAGAAATGCTATG+TGG | - | chr1.2:63132761-63132780 | MS.gene07488:intron | 40.0% | |
| GTTGTCACCTACTTTCATAG+AGG | + | chr1.2:63134791-63134810 | None:intergenic | 40.0% | |
| TACTGAAATTGTAGCTCGTG+TGG | - | chr1.2:63135032-63135051 | MS.gene07488:CDS | 40.0% | |
| TCCTCATCATTCTGTTGTTC+TGG | + | chr1.2:63135165-63135184 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr1.2:63133355-63133374 | None:intergenic | 40.0% | |
| ! | GTTTCAATTTTCGTCACCCA+TGG | - | chr1.2:63134482-63134501 | MS.gene07488:intron | 40.0% |
| ! | TCTAGCCTTTGGTGTACATT+GGG | - | chr1.2:63133143-63133162 | MS.gene07488:intron | 40.0% |
| ! | TTCTAGCCTTTGGTGTACAT+TGG | - | chr1.2:63133142-63133161 | MS.gene07488:intron | 40.0% |
| !!! | GAACTCTATGTTTTGGTCAC+GGG | - | chr1.2:63133898-63133917 | MS.gene07488:CDS | 40.0% |
| AAACTCGCCAACTCTTTGCA+AGG | - | chr1.2:63133931-63133950 | MS.gene07488:CDS | 45.0% | |
| AAATTGAAACGCCCATGAGC+AGG | + | chr1.2:63134472-63134491 | None:intergenic | 45.0% | |
| AAGCTGACCTTGCAAAGAGT+TGG | + | chr1.2:63133941-63133960 | None:intergenic | 45.0% | |
| AGCAACCCAATGTACACCAA+AGG | + | chr1.2:63133151-63133170 | None:intergenic | 45.0% | |
| AGTGAGGCTCCAACAATTAC+AGG | + | chr1.2:63133198-63133217 | None:intergenic | 45.0% | |
| ATATGTGGAACTACCCTTGC+CGG | - | chr1.2:63133117-63133136 | MS.gene07488:intron | 45.0% | |
| CCAGAAATAACTACTCCCTC+CGG | + | chr1.2:63133469-63133488 | None:intergenic | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | - | chr1.2:63133451-63133470 | MS.gene07488:CDS | 45.0% | |
| GAAATTCCAGCTCTCTTCCA+TGG | + | chr1.2:63132571-63132590 | None:intergenic | 45.0% | |
| GTAGTCTTTGAGTACACTGC+CGG | - | chr1.2:63132802-63132821 | MS.gene07488:intron | 45.0% | |
| GTATGGTTAGCACTACGTAC+CGG | + | chr1.2:63132824-63132843 | None:intergenic | 45.0% | |
| TATTGGTACGTATGTGGTGC+AGG | - | chr1.2:63134186-63134205 | MS.gene07488:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | - | chr1.2:63133450-63133469 | MS.gene07488:CDS | 45.0% | |
| TGGAATTTCTTGCGGCATGT+GGG | - | chr1.2:63132582-63132601 | MS.gene07488:CDS | 45.0% | |
| TGGAGAATCCAGGTAGAAGA+TGG | - | chr1.2:63132544-63132563 | MS.gene07488:CDS | 45.0% | |
| ! | CATTGGGTTGCTAGTAAAGC+AGG | - | chr1.2:63133159-63133178 | MS.gene07488:CDS | 45.0% |
| ! | GTTAGACTCACTTGCTGCTT+GGG | + | chr1.2:63134235-63134254 | None:intergenic | 45.0% |
| ! | TGTTAGACTCACTTGCTGCT+TGG | + | chr1.2:63134236-63134255 | None:intergenic | 45.0% |
| !! | GTATTTACGTGTCGGTGTCA+TGG | - | chr1.2:63133488-63133507 | MS.gene07488:CDS | 45.0% |
| !!! | GGAGCCTCACTTTTTCTACT+AGG | - | chr1.2:63133207-63133226 | MS.gene07488:CDS | 45.0% |
| !! | ATGATTATAATTATAATTAT+TGG | - | chr1.2:63134169-63134188 | MS.gene07488:intron | 5.0% |
| !!! | TGTAAAATTAATAAATTTTT+AGG | + | chr1.2:63134663-63134682 | None:intergenic | 5.0% |
| AAGAGTTGGCGAGTTTGTCG+AGG | + | chr1.2:63133927-63133946 | None:intergenic | 50.0% | |
| CTGGAATTTCTTGCGGCATG+TGG | - | chr1.2:63132581-63132600 | MS.gene07488:CDS | 50.0% | |
| TACACCAAAGGCTAGAAGCC+CGG | + | chr1.2:63133139-63133158 | None:intergenic | 50.0% | |
| TATGTGGAACTACCCTTGCC+GGG | - | chr1.2:63133118-63133137 | MS.gene07488:intron | 50.0% | |
| TCCAGGTAGAAGATGGTCCA+TGG | - | chr1.2:63132551-63132570 | MS.gene07488:CDS | 50.0% | |
| TCCATGGACCATCTTCTACC+TGG | + | chr1.2:63132555-63132574 | None:intergenic | 50.0% | |
| ! | CCGGAGGGAGTAGTTATTTC+TGG | - | chr1.2:63133466-63133485 | MS.gene07488:CDS | 50.0% |
| ! | GTTCTAGACCAGCCCAAACA+GGG | + | chr1.2:63133882-63133901 | None:intergenic | 50.0% |
| !! | AGTTCTAGACCAGCCCAAAC+AGG | + | chr1.2:63133883-63133902 | None:intergenic | 50.0% |
| !! | TTACGTGTCGGTGTCATGGT+TGG | - | chr1.2:63133492-63133511 | MS.gene07488:CDS | 50.0% |
| AAAGGCTAGAAGCCCGGCAA+GGG | + | chr1.2:63133133-63133152 | None:intergenic | 55.0% | |
| CACGACTGTTCGCCCTGTTT+GGG | - | chr1.2:63133867-63133886 | MS.gene07488:CDS | 55.0% | |
| CTAGATGGGAGCCTGCTCAT+GGG | - | chr1.2:63134458-63134477 | MS.gene07488:intron | 55.0% | |
| GATGGTCCATGGAAGAGAGC+TGG | - | chr1.2:63132562-63132581 | MS.gene07488:CDS | 55.0% | |
| ACTGTTCGCCCTGTTTGGGC+TGG | - | chr1.2:63133871-63133890 | MS.gene07488:CDS | 60.0% | |
| CAAAGGCTAGAAGCCCGGCA+AGG | + | chr1.2:63133134-63133153 | None:intergenic | 60.0% | |
| GCACGACTGTTCGCCCTGTT+TGG | - | chr1.2:63133866-63133885 | MS.gene07488:CDS | 60.0% | |
| GCTAGATGGGAGCCTGCTCA+TGG | - | chr1.2:63134457-63134476 | MS.gene07488:intron | 60.0% | |
| ! | CTTGCCGGGCTTCTAGCCTT+TGG | - | chr1.2:63133132-63133151 | MS.gene07488:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63132523 | 63135215 | 63132523 | ID=MS.gene07488 |
| chr1.2 | mRNA | 63132523 | 63135215 | 63132523 | ID=MS.gene07488.t1;Parent=MS.gene07488 |
| chr1.2 | exon | 63134915 | 63135215 | 63134915 | ID=MS.gene07488.t1.exon1;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63134915 | 63135215 | 63134915 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63134510 | 63134650 | 63134510 | ID=MS.gene07488.t1.exon2;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63134510 | 63134650 | 63134510 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63133786 | 63134058 | 63133786 | ID=MS.gene07488.t1.exon3;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63133786 | 63134058 | 63133786 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63133427 | 63133530 | 63133427 | ID=MS.gene07488.t1.exon4;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63133427 | 63133530 | 63133427 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63133147 | 63133290 | 63133147 | ID=MS.gene07488.t1.exon5;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63133147 | 63133290 | 63133147 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63132936 | 63132984 | 63132936 | ID=MS.gene07488.t1.exon6;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63132936 | 63132984 | 63132936 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| chr1.2 | exon | 63132523 | 63132692 | 63132523 | ID=MS.gene07488.t1.exon7;Parent=MS.gene07488.t1 |
| chr1.2 | CDS | 63132523 | 63132692 | 63132523 | ID=cds.MS.gene07488.t1;Parent=MS.gene07488.t1 |
| Gene Sequence |
| Protein sequence |
