Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062180.t1 | XP_013468853.1 | 93.5 | 474 | 30 | 1 | 1 | 474 | 1 | 473 | 9.20E-234 | 819.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062180.t1 | O23086 | 49.3 | 448 | 188 | 6 | 5 | 414 | 8 | 454 | 7.9e-117 | 422.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062180.t1 | A0A072VXW6 | 93.5 | 474 | 30 | 1 | 1 | 474 | 1 | 473 | 6.6e-234 | 819.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene062180 | 0.860465 | 2.03E-63 | -1.69E-46 |
| MS.gene052211 | MS.gene062180 | 0.863411 | 2.54E-64 | -1.69E-46 |
| MS.gene052212 | MS.gene062180 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene05240 | MS.gene062180 | 0.832675 | 8.25E-56 | -1.69E-46 |
| MS.gene05244 | MS.gene062180 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene052706 | MS.gene062180 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene062180 | 0.807592 | 4.69E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene062180 | 0.802855 | 4.60E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene062180 | 0.82178 | 3.37E-53 | -1.69E-46 |
| MS.gene054181 | MS.gene062180 | 0.807953 | 3.93E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene062180 | 0.811612 | 6.42E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene062180 | 0.850021 | 2.22E-60 | -1.69E-46 |
| MS.gene054742 | MS.gene062180 | 0.828821 | 7.27E-55 | -1.69E-46 |
| MS.gene055240 | MS.gene062180 | 0.839189 | 1.84E-57 | -1.69E-46 |
| MS.gene056218 | MS.gene062180 | 0.816824 | 4.53E-52 | -1.69E-46 |
| MS.gene056330 | MS.gene062180 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene062180 | 0.815578 | 8.60E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene062180 | 0.825763 | 3.93E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene062180 | 0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene057820 | MS.gene062180 | 0.800178 | 1.63E-48 | -1.69E-46 |
| MS.gene058603 | MS.gene062180 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene062180 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene062180 | 0.805415 | 1.35E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene062180 | 0.847072 | 1.46E-59 | -1.69E-46 |
| MS.gene059955 | MS.gene062180 | 0.882178 | 1.30E-70 | -1.69E-46 |
| MS.gene060087 | MS.gene062180 | 0.817268 | 3.60E-52 | -1.69E-46 |
| MS.gene060405 | MS.gene062180 | 0.800891 | 1.16E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062180 | MS.gene66665 | PPI |
| MS.gene062180 | MS.gene044738 | PPI |
| MS.gene062180 | MS.gene96117 | PPI |
| MS.gene062180 | MS.gene61659 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062180.t1 | MTR_1g077660 | 94.937 | 474 | 23 | 1 | 1 | 474 | 1 | 473 | 0.0 | 930 |
| MS.gene062180.t1 | MTR_1g077670 | 82.983 | 476 | 75 | 4 | 4 | 474 | 10 | 484 | 0.0 | 802 |
| MS.gene062180.t1 | MTR_7g106260 | 44.622 | 437 | 225 | 5 | 19 | 450 | 11 | 435 | 7.43e-115 | 347 |
| MS.gene062180.t1 | MTR_4g051575 | 44.527 | 402 | 198 | 5 | 37 | 435 | 35 | 414 | 3.84e-110 | 334 |
| MS.gene062180.t1 | MTR_2g087288 | 43.035 | 402 | 213 | 4 | 46 | 443 | 37 | 426 | 1.23e-109 | 332 |
| MS.gene062180.t1 | MTR_1g115140 | 41.622 | 370 | 205 | 4 | 25 | 384 | 16 | 384 | 1.16e-97 | 304 |
| MS.gene062180.t1 | MTR_2g087285 | 41.606 | 411 | 221 | 5 | 34 | 439 | 25 | 421 | 4.43e-97 | 300 |
| MS.gene062180.t1 | MTR_1g115175 | 34.615 | 520 | 254 | 8 | 23 | 458 | 10 | 527 | 1.34e-96 | 301 |
| MS.gene062180.t1 | MTR_1g115190 | 41.667 | 372 | 206 | 5 | 23 | 384 | 11 | 381 | 1.88e-87 | 278 |
| MS.gene062180.t1 | MTR_5g014310 | 40.688 | 349 | 199 | 4 | 42 | 383 | 53 | 400 | 5.85e-84 | 269 |
| MS.gene062180.t1 | MTR_4g098570 | 38.503 | 374 | 218 | 3 | 17 | 384 | 25 | 392 | 5.27e-82 | 263 |
| MS.gene062180.t1 | MTR_7g094770 | 35.878 | 393 | 236 | 4 | 50 | 438 | 60 | 440 | 1.01e-79 | 254 |
| MS.gene062180.t1 | MTR_4g098610 | 39.142 | 373 | 215 | 3 | 17 | 383 | 25 | 391 | 2.26e-76 | 249 |
| MS.gene062180.t1 | MTR_8g104110 | 36.339 | 366 | 213 | 8 | 34 | 382 | 51 | 413 | 5.00e-74 | 244 |
| MS.gene062180.t1 | MTR_8g104130 | 36.314 | 369 | 226 | 6 | 14 | 376 | 23 | 388 | 5.01e-72 | 238 |
| MS.gene062180.t1 | MTR_6g084680 | 35.676 | 370 | 220 | 6 | 24 | 377 | 59 | 426 | 5.13e-72 | 239 |
| MS.gene062180.t1 | MTR_8g104120 | 35.342 | 365 | 216 | 8 | 34 | 382 | 47 | 407 | 1.33e-66 | 224 |
| MS.gene062180.t1 | MTR_4g051575 | 41.216 | 296 | 151 | 5 | 144 | 435 | 4 | 280 | 2.29e-65 | 214 |
| MS.gene062180.t1 | MTR_1g111250 | 32.676 | 355 | 223 | 5 | 40 | 382 | 68 | 418 | 1.40e-63 | 215 |
| MS.gene062180.t1 | MTR_0710s0020 | 48.555 | 173 | 85 | 2 | 23 | 191 | 11 | 183 | 9.53e-44 | 152 |
| MS.gene062180.t1 | MTR_6g015325 | 36.905 | 84 | 51 | 2 | 101 | 184 | 7 | 88 | 9.03e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062180.t1 | AT4G00910 | 49.892 | 465 | 206 | 5 | 5 | 443 | 8 | 471 | 1.24e-163 | 471 |
| MS.gene062180.t1 | AT1G08440 | 43.596 | 406 | 211 | 2 | 36 | 435 | 3 | 396 | 3.22e-117 | 353 |
| MS.gene062180.t1 | AT2G27240 | 42.054 | 409 | 219 | 3 | 36 | 438 | 3 | 399 | 4.01e-112 | 340 |
| MS.gene062180.t1 | AT1G08430 | 42.410 | 415 | 218 | 3 | 36 | 441 | 3 | 405 | 7.20e-111 | 337 |
| MS.gene062180.t1 | AT2G27240 | 40.230 | 435 | 216 | 4 | 36 | 438 | 3 | 425 | 9.32e-109 | 332 |
| MS.gene062180.t1 | AT3G11680 | 43.721 | 430 | 215 | 7 | 18 | 438 | 10 | 421 | 2.69e-107 | 327 |
| MS.gene062180.t1 | AT3G11680 | 43.721 | 430 | 215 | 7 | 18 | 438 | 8 | 419 | 3.05e-107 | 327 |
| MS.gene062180.t1 | AT4G17970 | 37.978 | 366 | 222 | 3 | 21 | 383 | 15 | 378 | 5.77e-89 | 282 |
| MS.gene062180.t1 | AT5G46600 | 37.950 | 361 | 214 | 3 | 32 | 383 | 28 | 387 | 1.56e-87 | 278 |
| MS.gene062180.t1 | AT5G46610 | 36.224 | 392 | 243 | 2 | 9 | 394 | 4 | 394 | 2.12e-87 | 278 |
| MS.gene062180.t1 | AT1G18420 | 35.770 | 383 | 225 | 6 | 19 | 382 | 52 | 432 | 7.85e-76 | 248 |
| MS.gene062180.t1 | AT5G46610 | 32.908 | 392 | 232 | 3 | 9 | 394 | 4 | 370 | 9.12e-74 | 241 |
| MS.gene062180.t1 | AT3G18440 | 37.127 | 369 | 211 | 9 | 30 | 382 | 63 | 426 | 3.22e-73 | 242 |
| MS.gene062180.t1 | AT1G18420 | 36.752 | 351 | 205 | 5 | 47 | 382 | 1 | 349 | 1.67e-72 | 238 |
| MS.gene062180.t1 | AT5G46610 | 32.143 | 392 | 212 | 3 | 9 | 394 | 4 | 347 | 1.00e-66 | 222 |
| MS.gene062180.t1 | AT2G17470 | 33.613 | 357 | 219 | 8 | 34 | 376 | 18 | 370 | 6.14e-62 | 211 |
| MS.gene062180.t1 | AT2G17470 | 33.613 | 357 | 219 | 8 | 34 | 376 | 40 | 392 | 8.15e-62 | 211 |
| MS.gene062180.t1 | AT1G68600 | 34.770 | 348 | 210 | 7 | 43 | 376 | 45 | 389 | 2.99e-60 | 206 |
| MS.gene062180.t1 | AT1G25480 | 33.611 | 360 | 222 | 7 | 30 | 376 | 43 | 398 | 7.90e-59 | 202 |
| MS.gene062180.t1 | AT4G17585 | 43.956 | 91 | 47 | 3 | 21 | 108 | 15 | 104 | 8.32e-17 | 77.8 |
Find 84 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCATTGATGCTCTTAT+TGG | 0.158685 | 1.1:+58206664 | MS.gene062180:CDS |
| ACTTGAATTAATTCTATTAT+TGG | 0.173844 | 1.1:-58207105 | None:intergenic |
| AGAATTTCCACTATTATAAT+TGG | 0.174482 | 1.1:+58205929 | MS.gene062180:CDS |
| TTGTCACATTTAGACATTTC+TGG | 0.186292 | 1.1:-58207222 | None:intergenic |
| TGGAAGCAATATCTTAAAAT+TGG | 0.274268 | 1.1:+58206619 | MS.gene062180:CDS |
| TTCAGGCTAATTTAGCTAGA+TGG | 0.290212 | 1.1:+58206560 | MS.gene062180:intron |
| GCACGACTGTTCGCCCTGTT+TGG | 0.294097 | 1.1:+58205975 | MS.gene062180:CDS |
| AAGATTTATACCAACTATAA+AGG | 0.295645 | 1.1:+58205808 | MS.gene062180:CDS |
| CAATGATTCTTCTGTTGCTT+TGG | 0.297791 | 1.1:-58206406 | None:intergenic |
| CTTCCAACACCATCATATAA+AGG | 0.302727 | 1.1:-58204970 | None:intergenic |
| CTTGAATTAATTCTATTATT+GGG | 0.328345 | 1.1:-58207104 | None:intergenic |
| CACGACTGTTCGCCCTGTTT+GGG | 0.329652 | 1.1:+58205976 | MS.gene062180:CDS |
| GTTAGACTCACTTGCTGCTT+GGG | 0.330664 | 1.1:-58206349 | None:intergenic |
| AATTGATGAATTGTTTGATT+TGG | 0.335580 | 1.1:+58205898 | MS.gene062180:CDS |
| AGTGAGGCTCCAACAATTAC+AGG | 0.347390 | 1.1:-58205332 | None:intergenic |
| TTCAGTTTGGTTTCAATATC+CGG | 0.352067 | 1.1:+58205869 | MS.gene062180:CDS |
| ATTTATCCTCACTTTCAGTT+TGG | 0.369853 | 1.1:+58205856 | MS.gene062180:CDS |
| TTCTAGCCTTTGGTGTACAT+TGG | 0.372115 | 1.1:+58205279 | MS.gene062180:CDS |
| GTTGTCTGCTGAATGATGTT+TGG | 0.372763 | 1.1:-58207247 | None:intergenic |
| TCTAGCCTTTGGTGTACATT+GGG | 0.373912 | 1.1:+58205280 | MS.gene062180:CDS |
| CTTGCCGGGCTTCTAGCCTT+TGG | 0.375772 | 1.1:+58205269 | MS.gene062180:CDS |
| ATATGTGGAACTACCCTTGC+CGG | 0.376919 | 1.1:+58205254 | MS.gene062180:CDS |
| TCCTCATCATTCTGTTGGTC+TGG | 0.378128 | 1.1:-58207279 | None:intergenic |
| TGGTCTAGAACTCTATGTTT+TGG | 0.392947 | 1.1:+58206000 | MS.gene062180:CDS |
| TTGCCTCCTCATCATTCTGT+TGG | 0.396110 | 1.1:-58207284 | None:intergenic |
| TGTTAGACTCACTTGCTGCT+TGG | 0.402132 | 1.1:-58206350 | None:intergenic |
| TCCTCATTATTCAAACCATC+TGG | 0.403183 | 1.1:-58207320 | None:intergenic |
| TTAATAAATTCTGAAGCTCT+AGG | 0.407771 | 1.1:-58207023 | None:intergenic |
| CAATTCATCAATTCTATAAC+CGG | 0.413490 | 1.1:-58205888 | None:intergenic |
| AGTTCTAGACCAGCCCAAAC+AGG | 0.414800 | 1.1:-58205989 | None:intergenic |
| ACTGTTCGCCCTGTTTGGGC+TGG | 0.434664 | 1.1:+58205980 | MS.gene062180:CDS |
| TGAAGTTCCAATTATAATAG+TGG | 0.434981 | 1.1:-58205936 | None:intergenic |
| CAAAGCAACAGAAGAATCAT+TGG | 0.439510 | 1.1:+58206407 | MS.gene062180:CDS |
| TTTCACAAATTTGCACAACT+TGG | 0.440882 | 1.1:-58204848 | None:intergenic |
| TTCATCCATTGTTTGAAAGT+AGG | 0.446047 | 1.1:+58204907 | MS.gene062180:CDS |
| TACTTGAAACCTTTATATGA+TGG | 0.450489 | 1.1:+58204961 | MS.gene062180:CDS |
| TCAGGCTAATTTAGCTAGAT+GGG | 0.451798 | 1.1:+58206561 | MS.gene062180:intron |
| TCAAAACGAGCCTTTATAGT+TGG | 0.456472 | 1.1:-58205818 | None:intergenic |
| GCTAGATGGGAGCCTGCTCA+TGG | 0.466832 | 1.1:+58206574 | MS.gene062180:CDS |
| GAAATTCCAGCTCTCTTCCA+TGG | 0.473583 | 1.1:-58204790 | None:intergenic |
| CAATGGGAACCTGTAATTGT+TGG | 0.475128 | 1.1:+58205323 | MS.gene062180:CDS |
| TGACTAATGAAAAGGTAGAA+TGG | 0.476764 | 1.1:+58204746 | MS.gene062180:CDS |
| AAGCTGACCTTGCAAAGAGT+TGG | 0.485113 | 1.1:-58206047 | None:intergenic |
| CATTGGGTTGCTAGTAAAGC+AGG | 0.488274 | 1.1:+58205296 | MS.gene062180:CDS |
| ATTAAAGATGACTAATGAAA+AGG | 0.488687 | 1.1:+58204738 | None:intergenic |
| AAATTGAAACGCCCATGAGC+AGG | 0.504173 | 1.1:-58206586 | None:intergenic |
| TCCATGGACCATCTTCTACC+TGG | 0.506733 | 1.1:-58204774 | None:intergenic |
| CTGGAATTTCTTGCAGCATG+TGG | 0.508092 | 1.1:+58204803 | MS.gene062180:CDS |
| CTAGTAAAGCAGGAGATCAA+TGG | 0.509667 | 1.1:+58205306 | MS.gene062180:CDS |
| GAAAGTAGGAATAGCACTTA+CGG | 0.516631 | 1.1:+58204921 | MS.gene062180:CDS |
| TAGTAAAGCAGGAGATCAAT+GGG | 0.520063 | 1.1:+58205307 | MS.gene062180:CDS |
| GATGGTCCATGGAAGAGAGC+TGG | 0.527590 | 1.1:+58204784 | MS.gene062180:CDS |
| AAAAGTGTAAACAGAATATG+TGG | 0.528989 | 1.1:+58205239 | MS.gene062180:CDS |
| TAATAAATTCTGAAGCTCTA+GGG | 0.530295 | 1.1:-58207022 | None:intergenic |
| TACACCAAAGGCTAGAAGCC+CGG | 0.532274 | 1.1:-58205273 | None:intergenic |
| AAACCTTTATATGATGGTGT+TGG | 0.534000 | 1.1:+58204967 | MS.gene062180:CDS |
| TGGAGAATCCAGGTAGAAGA+TGG | 0.550522 | 1.1:+58204766 | MS.gene062180:CDS |
| CTATTCCTACTTTCAAACAA+TGG | 0.556799 | 1.1:-58204912 | None:intergenic |
| TATGTGGAACTACCCTTGCC+GGG | 0.557506 | 1.1:+58205255 | MS.gene062180:CDS |
| TGGTATAAATCTTGAAAATG+TGG | 0.560638 | 1.1:-58205798 | None:intergenic |
| TGGAATTTCTTGCAGCATGT+GGG | 0.565529 | 1.1:+58204804 | MS.gene062180:CDS |
| AATAATAGAATTAATTCAAG+TGG | 0.567797 | 1.1:+58207107 | MS.gene062180:CDS |
| AAAGGCTAGAAGCCCGGCAA+GGG | 0.569854 | 1.1:-58205267 | None:intergenic |
| CTAGATGGGAGCCTGCTCAT+GGG | 0.572292 | 1.1:+58206575 | MS.gene062180:CDS |
| GTAGTCTTTGAGTACACTGC+GGG | 0.575767 | 1.1:+58205024 | MS.gene062180:CDS |
| TCCAGGTAGAAGATGGTCCA+TGG | 0.576984 | 1.1:+58204773 | MS.gene062180:CDS |
| AAAGGTAGAATGGAGAATCC+AGG | 0.582137 | 1.1:+58204756 | MS.gene062180:CDS |
| GTTCTAGACCAGCCCAAACA+GGG | 0.583021 | 1.1:-58205988 | None:intergenic |
| GTTGTCACCTACTTTCATAG+AGG | 0.589780 | 1.1:-58206905 | None:intergenic |
| TACTGAAATTGTAGCTCGTG+TGG | 0.591275 | 1.1:+58207149 | MS.gene062180:CDS |
| AAACTCGCCAACTCTTTGCA+AGG | 0.594774 | 1.1:+58206040 | MS.gene062180:CDS |
| AGCAGAACCTCTATGAAAGT+AGG | 0.598229 | 1.1:+58206898 | MS.gene062180:CDS |
| CAAAGGCTAGAAGCCCGGCA+AGG | 0.602133 | 1.1:-58205268 | None:intergenic |
| TTGAAACCAAACTGAAAGTG+AGG | 0.606576 | 1.1:-58205862 | None:intergenic |
| TTGCATAAATTCAGAAAACA+AGG | 0.607863 | 1.1:+58206687 | MS.gene062180:CDS |
| AAGAGTTGGCGAGTTTGTCG+AGG | 0.617634 | 1.1:-58206033 | None:intergenic |
| AATCTTCATGATGTCATCTG+AGG | 0.633279 | 1.1:-58206872 | None:intergenic |
| GTACTCAAAGACTACAATCA+CGG | 0.651714 | 1.1:-58205016 | None:intergenic |
| AGCAACCCAATGTACACCAA+AGG | 0.653502 | 1.1:-58205285 | None:intergenic |
| GTGTTGGAAGAAATGCTATG+TGG | 0.665026 | 1.1:+58204983 | MS.gene062180:CDS |
| TGTTGGAAGAAATGCTATGT+GGG | 0.671135 | 1.1:+58204984 | MS.gene062180:CDS |
| AGACCAACAGAATGATGAGG+AGG | 0.675708 | 1.1:+58207281 | MS.gene062180:CDS |
| ACCAGACCAACAGAATGATG+AGG | 0.692301 | 1.1:+58207278 | MS.gene062180:CDS |
| TGTAGTCTTTGAGTACACTG+CGG | 0.756186 | 1.1:+58205023 | MS.gene062180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAATTAATTAATTA+AGG | - | chr1.1:58206747-58206728 | None:intergenic | 0.0% |
| !! | TAATTATAATTTATAATTAT+TGG | + | chr1.1:58206286-58206305 | MS.gene062180:intron | 0.0% |
| !!! | AAATATTTGATTAGTTTTTA+GGG | - | chr1.1:58206199-58206218 | None:intergenic | 10.0% |
| !! | AATAATAGAATTAATTCAAG+TGG | + | chr1.1:58207107-58207126 | MS.gene062180:CDS | 15.0% |
| !! | ACTTGAATTAATTCTATTAT+TGG | - | chr1.1:58207108-58207127 | None:intergenic | 15.0% |
| !! | CCCTTAAATTAATTTATAAT+CGG | + | chr1.1:58206467-58206486 | MS.gene062180:intron | 15.0% |
| !! | CCGATTATAAATTAATTTAA+GGG | - | chr1.1:58206470-58206489 | None:intergenic | 15.0% |
| !! | CTTGAATTAATTCTATTATT+GGG | - | chr1.1:58207107-58207126 | None:intergenic | 15.0% |
| !! | TAGTATATATAAATATCACA+AGG | - | chr1.1:58205190-58205209 | None:intergenic | 15.0% |
| !! | TAGTCATGTTATATAAATTA+GGG | - | chr1.1:58206522-58206541 | None:intergenic | 15.0% |
| !! | TCCGATTATAAATTAATTTA+AGG | - | chr1.1:58206471-58206490 | None:intergenic | 15.0% |
| !! | TTAGTCATGTTATATAAATT+AGG | - | chr1.1:58206523-58206542 | None:intergenic | 15.0% |
| !!! | AAGTCATTACTATTATTTTT+TGG | + | chr1.1:58206753-58206772 | MS.gene062180:intron | 15.0% |
| !!! | ATTAATATTTTGTTGATTTC+AGG | + | chr1.1:58206543-58206562 | MS.gene062180:intron | 15.0% |
| !!! | CAAATATTTGATTAGTTTTT+AGG | - | chr1.1:58206200-58206219 | None:intergenic | 15.0% |
| !! | AAGATTTATACCAACTATAA+AGG | + | chr1.1:58205808-58205827 | MS.gene062180:CDS | 20.0% |
| !! | AATTGATGAATTGTTTGATT+TGG | + | chr1.1:58205898-58205917 | MS.gene062180:CDS | 20.0% |
| !! | AGAATTTCCACTATTATAAT+TGG | + | chr1.1:58205929-58205948 | MS.gene062180:CDS | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | + | chr1.1:58205497-58205516 | MS.gene062180:intron | 20.0% |
| !! | GATGTATCTAGTTAAAAATT+TGG | + | chr1.1:58205532-58205551 | MS.gene062180:intron | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | + | chr1.1:58205496-58205515 | MS.gene062180:intron | 20.0% |
| !!! | ATTAGGGTTAAATATGTTTT+TGG | - | chr1.1:58206506-58206525 | None:intergenic | 20.0% |
| !!! | TAAATTAATTTAAGGGTGTA+TGG | - | chr1.1:58206463-58206482 | None:intergenic | 20.0% |
| !!! | TATACTATATGTTAATTTGC+AGG | + | chr1.1:58205203-58205222 | MS.gene062180:intron | 20.0% |
| ! | ACACAAAAAAATGCAAAAGA+AGG | + | chr1.1:58207060-58207079 | MS.gene062180:CDS | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr1.1:58205495-58205514 | None:intergenic | 25.0% |
| ! | CAAATTTGTGAAAAAAGCTT+GGG | + | chr1.1:58204858-58204877 | MS.gene062180:CDS | 25.0% |
| ! | CAATTCATCAATTCTATAAC+CGG | - | chr1.1:58205891-58205910 | None:intergenic | 25.0% |
| ! | CATGTTAAAGCAATTAAAAG+TGG | - | chr1.1:58206151-58206170 | None:intergenic | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | - | chr1.1:58205500-58205519 | None:intergenic | 25.0% |
| ! | CCTAAATTTCTCTTGTAAAT+AGG | + | chr1.1:58205579-58205598 | MS.gene062180:intron | 25.0% |
| ! | CCTATTTACAAGAGAAATTT+AGG | - | chr1.1:58205582-58205601 | None:intergenic | 25.0% |
| ! | GAGTCTAACAAAAATTTGAT+GGG | + | chr1.1:58206363-58206382 | MS.gene062180:CDS | 25.0% |
| ! | GTATGGTAATTAAAATCTCT+AGG | - | chr1.1:58206446-58206465 | None:intergenic | 25.0% |
| ! | TACCTATATACTTAATCTTG+AGG | + | chr1.1:58206810-58206829 | MS.gene062180:intron | 25.0% |
| ! | TACTTGAAACCTTTATATGA+TGG | + | chr1.1:58204961-58204980 | MS.gene062180:CDS | 25.0% |
| ! | TATAATTATTGGTACGTATG+TGG | + | chr1.1:58206297-58206316 | MS.gene062180:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | - | chr1.1:58205559-58205578 | None:intergenic | 25.0% |
| ! | TGAAGTTCCAATTATAATAG+TGG | - | chr1.1:58205939-58205958 | None:intergenic | 25.0% |
| ! | TGAGTCTAACAAAAATTTGA+TGG | + | chr1.1:58206362-58206381 | MS.gene062180:CDS | 25.0% |
| ! | TGGAAGCAATATCTTAAAAT+TGG | + | chr1.1:58206619-58206638 | MS.gene062180:CDS | 25.0% |
| ! | TGGTATAAATCTTGAAAATG+TGG | - | chr1.1:58205801-58205820 | None:intergenic | 25.0% |
| ! | TTGCATAAATTCAGAAAACA+AGG | + | chr1.1:58206687-58206706 | MS.gene062180:CDS | 25.0% |
| !! | AAAAGTGTAAACAGAATATG+TGG | + | chr1.1:58205239-58205258 | MS.gene062180:CDS | 25.0% |
| !! | AAACAATGGATGAATTTTCT+AGG | - | chr1.1:58204901-58204920 | None:intergenic | 25.0% |
| !! | AACAATGGATGAATTTTCTA+GGG | - | chr1.1:58204900-58204919 | None:intergenic | 25.0% |
| !!! | ATTCACATTTTAACGAACTA+TGG | - | chr1.1:58205063-58205082 | None:intergenic | 25.0% |
| !!! | ATTTTAAGATATTGCTTCCA+TGG | - | chr1.1:58206619-58206638 | None:intergenic | 25.0% |
| !!! | ATTTTATTTAATACTCCCTC+CGG | + | chr1.1:58205473-58205492 | MS.gene062180:intron | 25.0% |
| !!! | TAATAAATTCTGAAGCTCTA+GGG | - | chr1.1:58207025-58207044 | None:intergenic | 25.0% |
| !!! | TTAATAAATTCTGAAGCTCT+AGG | - | chr1.1:58207026-58207045 | None:intergenic | 25.0% |
| !!! | TTTGCATTTTTTTGTGTGTT+TGG | - | chr1.1:58207057-58207076 | None:intergenic | 25.0% |
| !!! | TTTTAAGATATTGCTTCCAT+GGG | - | chr1.1:58206618-58206637 | None:intergenic | 25.0% |
| ATATTCAATGCACAAGTCTT+CGG | - | chr1.1:58206078-58206097 | None:intergenic | 30.0% | |
| ATTTATCCTCACTTTCAGTT+TGG | + | chr1.1:58205856-58205875 | MS.gene062180:CDS | 30.0% | |
| ATTTCTCTTGTAAATAGGAC+CGG | + | chr1.1:58205584-58205603 | MS.gene062180:intron | 30.0% | |
| CAAAAAAATGCAAAAGAAGG+TGG | + | chr1.1:58207063-58207082 | MS.gene062180:CDS | 30.0% | |
| CTATTCCTACTTTCAAACAA+TGG | - | chr1.1:58204915-58204934 | None:intergenic | 30.0% | |
| GCAAATTTGTGAAAAAAGCT+TGG | + | chr1.1:58204857-58204876 | MS.gene062180:CDS | 30.0% | |
| TGACTAATGAAAAGGTAGAA+TGG | + | chr1.1:58204746-58204765 | MS.gene062180:CDS | 30.0% | |
| TGCCTCAAGATTAAGTATAT+AGG | - | chr1.1:58206815-58206834 | None:intergenic | 30.0% | |
| TTCATCCATTGTTTGAAAGT+AGG | + | chr1.1:58204907-58204926 | MS.gene062180:CDS | 30.0% | |
| TTGTCACATTTAGACATTTC+TGG | - | chr1.1:58207225-58207244 | None:intergenic | 30.0% | |
| TTTACCTAGTAGAAAAAGTG+AGG | - | chr1.1:58205351-58205370 | None:intergenic | 30.0% | |
| TTTCACAAATTTGCACAACT+TGG | - | chr1.1:58204851-58204870 | None:intergenic | 30.0% | |
| ! | AAACCTTTATATGATGGTGT+TGG | + | chr1.1:58204967-58204986 | MS.gene062180:CDS | 30.0% |
| ! | GGTAATTAAAATCTCTAGGA+AGG | - | chr1.1:58206442-58206461 | None:intergenic | 30.0% |
| ! | TTCAGTTTGGTTTCAATATC+CGG | + | chr1.1:58205869-58205888 | MS.gene062180:CDS | 30.0% |
| !! | TATTTCTGGTATTTACGTGT+CGG | + | chr1.1:58205617-58205636 | MS.gene062180:intron | 30.0% |
| !! | TCAAATTTTAACGTCTGCAA+GGG | - | chr1.1:58205098-58205117 | None:intergenic | 30.0% |
| !!! | ATAAAGGCTCGTTTTGATTA+TGG | + | chr1.1:58205824-58205843 | MS.gene062180:CDS | 30.0% |
| AAAAATCAAGACACTCCAGA+TGG | + | chr1.1:58207305-58207324 | MS.gene062180:CDS | 35.0% | |
| AATCTTCATGATGTCATCTG+AGG | - | chr1.1:58206875-58206894 | None:intergenic | 35.0% | |
| CAAAGCAACAGAAGAATCAT+TGG | + | chr1.1:58206407-58206426 | MS.gene062180:CDS | 35.0% | |
| CTTCCAACACCATCATATAA+AGG | - | chr1.1:58204973-58204992 | None:intergenic | 35.0% | |
| GAAAGTAGGAATAGCACTTA+CGG | + | chr1.1:58204921-58204940 | MS.gene062180:CDS | 35.0% | |
| GTACTCAAAGACTACAATCA+CGG | - | chr1.1:58205019-58205038 | None:intergenic | 35.0% | |
| TACACACTAGTTATCGATCT+TGG | + | chr1.1:58205723-58205742 | MS.gene062180:intron | 35.0% | |
| TAGTAAAGCAGGAGATCAAT+GGG | + | chr1.1:58205307-58205326 | MS.gene062180:CDS | 35.0% | |
| TCAAAACGAGCCTTTATAGT+TGG | - | chr1.1:58205821-58205840 | None:intergenic | 35.0% | |
| TCAGGCTAATTTAGCTAGAT+GGG | + | chr1.1:58206561-58206580 | MS.gene062180:intron | 35.0% | |
| TGTTGGAAGAAATGCTATGT+GGG | + | chr1.1:58204984-58205003 | MS.gene062180:CDS | 35.0% | |
| TTCAGGCTAATTTAGCTAGA+TGG | + | chr1.1:58206560-58206579 | MS.gene062180:intron | 35.0% | |
| TTGAAACCAAACTGAAAGTG+AGG | - | chr1.1:58205865-58205884 | None:intergenic | 35.0% | |
| ! | CAATGATTCTTCTGTTGCTT+TGG | - | chr1.1:58206409-58206428 | None:intergenic | 35.0% |
| ! | TCTTGCATTGATGCTCTTAT+TGG | + | chr1.1:58206664-58206683 | MS.gene062180:CDS | 35.0% |
| !! | CTCAAATTTTAACGTCTGCA+AGG | - | chr1.1:58205099-58205118 | None:intergenic | 35.0% |
| !! | TGGTCTAGAACTCTATGTTT+TGG | + | chr1.1:58206000-58206019 | MS.gene062180:CDS | 35.0% |
| !!! | AGAACTCTATGTTTTGGTCA+CGG | + | chr1.1:58206006-58206025 | MS.gene062180:CDS | 35.0% |
| AAAGGTAGAATGGAGAATCC+AGG | + | chr1.1:58204756-58204775 | MS.gene062180:CDS | 40.0% | |
| AGCAGAACCTCTATGAAAGT+AGG | + | chr1.1:58206898-58206917 | MS.gene062180:CDS | 40.0% | |
| CAATGGGAACCTGTAATTGT+TGG | + | chr1.1:58205323-58205342 | MS.gene062180:CDS | 40.0% | |
| CTAGTAAAGCAGGAGATCAA+TGG | + | chr1.1:58205306-58205325 | MS.gene062180:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr1.1:58205491-58205510 | None:intergenic | 40.0% | |
| GTGAAAAAAGCTTGGGAGAT+TGG | + | chr1.1:58204865-58204884 | MS.gene062180:CDS | 40.0% | |
| GTGTTGGAAGAAATGCTATG+TGG | + | chr1.1:58204983-58205002 | MS.gene062180:CDS | 40.0% | |
| GTTGTCACCTACTTTCATAG+AGG | - | chr1.1:58206908-58206927 | None:intergenic | 40.0% | |
| GTTGTCTGCTGAATGATGTT+TGG | - | chr1.1:58207250-58207269 | None:intergenic | 40.0% | |
| TACTGAAATTGTAGCTCGTG+TGG | + | chr1.1:58207149-58207168 | MS.gene062180:CDS | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr1.1:58205492-58205511 | None:intergenic | 40.0% | |
| TGGAATTTCTTGCAGCATGT+GGG | + | chr1.1:58204804-58204823 | MS.gene062180:CDS | 40.0% | |
| TGTAGTCTTTGAGTACACTG+CGG | + | chr1.1:58205023-58205042 | MS.gene062180:CDS | 40.0% | |
| ! | GTTTCAATTTTCGTCACCCA+TGG | + | chr1.1:58206599-58206618 | MS.gene062180:CDS | 40.0% |
| ! | TCTAGCCTTTGGTGTACATT+GGG | + | chr1.1:58205280-58205299 | MS.gene062180:CDS | 40.0% |
| ! | TTCTAGCCTTTGGTGTACAT+TGG | + | chr1.1:58205279-58205298 | MS.gene062180:CDS | 40.0% |
| !!! | AACGTCTGCAAGGGTATTTT+AGG | - | chr1.1:58205089-58205108 | None:intergenic | 40.0% |
| !!! | GAACTCTATGTTTTGGTCAC+GGG | + | chr1.1:58206007-58206026 | MS.gene062180:CDS | 40.0% |
| AAACTCGCCAACTCTTTGCA+AGG | + | chr1.1:58206040-58206059 | MS.gene062180:CDS | 45.0% | |
| AAATTGAAACGCCCATGAGC+AGG | - | chr1.1:58206589-58206608 | None:intergenic | 45.0% | |
| AAGCTGACCTTGCAAAGAGT+TGG | - | chr1.1:58206050-58206069 | None:intergenic | 45.0% | |
| ACCAGACCAACAGAATGATG+AGG | + | chr1.1:58207278-58207297 | MS.gene062180:CDS | 45.0% | |
| AGACCAACAGAATGATGAGG+AGG | + | chr1.1:58207281-58207300 | MS.gene062180:CDS | 45.0% | |
| AGCAACCCAATGTACACCAA+AGG | - | chr1.1:58205288-58205307 | None:intergenic | 45.0% | |
| AGTGAGGCTCCAACAATTAC+AGG | - | chr1.1:58205335-58205354 | None:intergenic | 45.0% | |
| ATATGTGGAACTACCCTTGC+CGG | + | chr1.1:58205254-58205273 | MS.gene062180:CDS | 45.0% | |
| CCAGAAATAACTACTCCCTC+CGG | - | chr1.1:58205606-58205625 | None:intergenic | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | + | chr1.1:58205588-58205607 | MS.gene062180:intron | 45.0% | |
| CTGGAATTTCTTGCAGCATG+TGG | + | chr1.1:58204803-58204822 | MS.gene062180:CDS | 45.0% | |
| GAAATTCCAGCTCTCTTCCA+TGG | - | chr1.1:58204793-58204812 | None:intergenic | 45.0% | |
| GTAGTCTTTGAGTACACTGC+GGG | + | chr1.1:58205024-58205043 | MS.gene062180:CDS | 45.0% | |
| TATTGGTACGTATGTGGTGC+AGG | + | chr1.1:58206303-58206322 | MS.gene062180:intron | 45.0% | |
| TCCTCATCATTCTGTTGGTC+TGG | - | chr1.1:58207282-58207301 | None:intergenic | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr1.1:58205587-58205606 | MS.gene062180:intron | 45.0% | |
| TGGAGAATCCAGGTAGAAGA+TGG | + | chr1.1:58204766-58204785 | MS.gene062180:CDS | 45.0% | |
| TTGCCTCCTCATCATTCTGT+TGG | - | chr1.1:58207287-58207306 | None:intergenic | 45.0% | |
| ! | CATTGGGTTGCTAGTAAAGC+AGG | + | chr1.1:58205296-58205315 | MS.gene062180:CDS | 45.0% |
| ! | GTTAGACTCACTTGCTGCTT+GGG | - | chr1.1:58206352-58206371 | None:intergenic | 45.0% |
| ! | TGTTAGACTCACTTGCTGCT+TGG | - | chr1.1:58206353-58206372 | None:intergenic | 45.0% |
| !! | GTATTTACGTGTCGGTGTCA+TGG | + | chr1.1:58205625-58205644 | MS.gene062180:intron | 45.0% |
| !!! | GGAGCCTCACTTTTTCTACT+AGG | + | chr1.1:58205344-58205363 | MS.gene062180:CDS | 45.0% |
| !!! | TGTAAAATTAATAAATTTTT+AGG | - | chr1.1:58206780-58206799 | None:intergenic | 5.0% |
| AAGAGTTGGCGAGTTTGTCG+AGG | - | chr1.1:58206036-58206055 | None:intergenic | 50.0% | |
| TACACCAAAGGCTAGAAGCC+CGG | - | chr1.1:58205276-58205295 | None:intergenic | 50.0% | |
| TATGTGGAACTACCCTTGCC+GGG | + | chr1.1:58205255-58205274 | MS.gene062180:CDS | 50.0% | |
| TCCAGGTAGAAGATGGTCCA+TGG | + | chr1.1:58204773-58204792 | MS.gene062180:CDS | 50.0% | |
| TCCATGGACCATCTTCTACC+TGG | - | chr1.1:58204777-58204796 | None:intergenic | 50.0% | |
| ! | CCGGAGGGAGTAGTTATTTC+TGG | + | chr1.1:58205603-58205622 | MS.gene062180:intron | 50.0% |
| ! | GTTCTAGACCAGCCCAAACA+GGG | - | chr1.1:58205991-58206010 | None:intergenic | 50.0% |
| !! | AGTTCTAGACCAGCCCAAAC+AGG | - | chr1.1:58205992-58206011 | None:intergenic | 50.0% |
| !! | TTACGTGTCGGTGTCATGGT+TGG | + | chr1.1:58205629-58205648 | MS.gene062180:intron | 50.0% |
| AAAGGCTAGAAGCCCGGCAA+GGG | - | chr1.1:58205270-58205289 | None:intergenic | 55.0% | |
| CACGACTGTTCGCCCTGTTT+GGG | + | chr1.1:58205976-58205995 | MS.gene062180:CDS | 55.0% | |
| CTAGATGGGAGCCTGCTCAT+GGG | + | chr1.1:58206575-58206594 | MS.gene062180:CDS | 55.0% | |
| GATGGTCCATGGAAGAGAGC+TGG | + | chr1.1:58204784-58204803 | MS.gene062180:CDS | 55.0% | |
| ACTGTTCGCCCTGTTTGGGC+TGG | + | chr1.1:58205980-58205999 | MS.gene062180:CDS | 60.0% | |
| CAAAGGCTAGAAGCCCGGCA+AGG | - | chr1.1:58205271-58205290 | None:intergenic | 60.0% | |
| GCACGACTGTTCGCCCTGTT+TGG | + | chr1.1:58205975-58205994 | MS.gene062180:CDS | 60.0% | |
| GCTAGATGGGAGCCTGCTCA+TGG | + | chr1.1:58206574-58206593 | MS.gene062180:CDS | 60.0% | |
| ! | CTTGCCGGGCTTCTAGCCTT+TGG | + | chr1.1:58205269-58205288 | MS.gene062180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58204745 | 58207332 | 58204745 | ID=MS.gene062180 |
| chr1.1 | mRNA | 58204745 | 58207332 | 58204745 | ID=MS.gene062180.t1;Parent=MS.gene062180 |
| chr1.1 | exon | 58204745 | 58205045 | 58204745 | ID=MS.gene062180.t1.exon1;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58204745 | 58205045 | 58204745 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| chr1.1 | exon | 58205225 | 58205365 | 58205225 | ID=MS.gene062180.t1.exon2;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58205225 | 58205365 | 58205225 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| chr1.1 | exon | 58205789 | 58206061 | 58205789 | ID=MS.gene062180.t1.exon3;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58205789 | 58206061 | 58205789 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| chr1.1 | exon | 58206325 | 58206428 | 58206325 | ID=MS.gene062180.t1.exon4;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58206325 | 58206428 | 58206325 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| chr1.1 | exon | 58206565 | 58206708 | 58206565 | ID=MS.gene062180.t1.exon5;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58206565 | 58206708 | 58206565 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| chr1.1 | exon | 58206871 | 58207332 | 58206871 | ID=MS.gene062180.t1.exon6;Parent=MS.gene062180.t1 |
| chr1.1 | CDS | 58206871 | 58207332 | 58206871 | ID=cds.MS.gene062180.t1;Parent=MS.gene062180.t1 |
| Gene Sequence |
| Protein sequence |
