Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046054.t1 | RYR68903.1 | 79.4 | 1096 | 221 | 3 | 1 | 1094 | 1 | 1093 | 0.00E+00 | 1808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046054.t1 | M1BYJ7 | 68.9 | 546 | 167 | 2 | 7 | 549 | 4 | 549 | 7.9e-229 | 795.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046054.t1 | A0A445E0D3 | 79.4 | 1096 | 221 | 3 | 1 | 1094 | 1 | 1093 | 0.0e+00 | 1808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046054 | MS.gene002362 | PPI |
| MS.gene046054 | MS.gene048610 | PPI |
| MS.gene046054 | MS.gene57021 | PPI |
| MS.gene01745 | MS.gene046054 | PPI |
| MS.gene048480 | MS.gene046054 | PPI |
| MS.gene50180 | MS.gene046054 | PPI |
| MS.gene046054 | MS.gene052562 | PPI |
| MS.gene046054 | MS.gene009833 | PPI |
| MS.gene01336 | MS.gene046054 | PPI |
| MS.gene046054 | MS.gene53986 | PPI |
| MS.gene046054 | MS.gene03971 | PPI |
| MS.gene046054 | MS.gene066720 | PPI |
| MS.gene02306 | MS.gene046054 | PPI |
| MS.gene32211 | MS.gene046054 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046054.t1 | MTR_4g045997 | 96.721 | 549 | 18 | 0 | 1 | 549 | 1 | 549 | 0.0 | 1110 |
| MS.gene046054.t1 | MTR_4g045997 | 60.920 | 522 | 200 | 3 | 549 | 1067 | 30 | 550 | 0.0 | 670 |
| MS.gene046054.t1 | MTR_4g045997 | 96.721 | 549 | 18 | 0 | 1 | 549 | 1 | 549 | 0.0 | 1110 |
| MS.gene046054.t1 | MTR_4g045997 | 61.566 | 549 | 207 | 3 | 549 | 1094 | 30 | 577 | 0.0 | 714 |
| MS.gene046054.t1 | MTR_4g045993 | 96.703 | 546 | 11 | 1 | 549 | 1094 | 31 | 569 | 0.0 | 1094 |
| MS.gene046054.t1 | MTR_4g045993 | 59.528 | 551 | 211 | 4 | 1 | 549 | 1 | 541 | 0.0 | 687 |
| MS.gene046054.t1 | MTR_4g091240 | 70.054 | 551 | 157 | 4 | 549 | 1094 | 31 | 578 | 0.0 | 801 |
| MS.gene046054.t1 | MTR_4g091240 | 61.091 | 550 | 203 | 5 | 6 | 549 | 6 | 550 | 0.0 | 707 |
| MS.gene046054.t1 | MTR_2g011730 | 71.917 | 527 | 144 | 2 | 572 | 1094 | 52 | 578 | 0.0 | 798 |
| MS.gene046054.t1 | MTR_2g011730 | 62.909 | 550 | 193 | 5 | 6 | 549 | 6 | 550 | 0.0 | 718 |
| MS.gene046054.t1 | MTR_4g091240 | 71.304 | 460 | 128 | 2 | 639 | 1094 | 15 | 474 | 0.0 | 687 |
| MS.gene046054.t1 | MTR_4g091240 | 62.937 | 429 | 154 | 3 | 126 | 549 | 18 | 446 | 0.0 | 581 |
| MS.gene046054.t1 | MTR_4g090580 | 38.420 | 367 | 202 | 10 | 49 | 406 | 98 | 449 | 1.21e-64 | 229 |
| MS.gene046054.t1 | MTR_4g090580 | 35.200 | 375 | 205 | 10 | 563 | 913 | 95 | 455 | 1.08e-61 | 221 |
| MS.gene046054.t1 | MTR_4g090580 | 35.000 | 120 | 69 | 3 | 980 | 1094 | 428 | 543 | 2.65e-12 | 71.2 |
| MS.gene046054.t1 | MTR_5g071250 | 38.992 | 377 | 211 | 9 | 1 | 372 | 13 | 375 | 2.73e-63 | 221 |
| MS.gene046054.t1 | MTR_5g071250 | 39.881 | 336 | 180 | 8 | 563 | 889 | 53 | 375 | 3.49e-59 | 209 |
| MS.gene046054.t1 | MTR_5g071250 | 38.992 | 377 | 211 | 9 | 1 | 372 | 13 | 375 | 6.97e-63 | 223 |
| MS.gene046054.t1 | MTR_5g071250 | 39.881 | 336 | 180 | 8 | 563 | 889 | 53 | 375 | 2.35e-58 | 210 |
| MS.gene046054.t1 | MTR_3g464380 | 40.683 | 322 | 176 | 7 | 56 | 372 | 67 | 378 | 1.53e-60 | 216 |
| MS.gene046054.t1 | MTR_3g464380 | 37.600 | 375 | 207 | 10 | 555 | 916 | 48 | 408 | 2.42e-58 | 210 |
| MS.gene046054.t1 | MTR_0931s0010 | 29.503 | 322 | 205 | 9 | 55 | 374 | 234 | 535 | 8.88e-29 | 125 |
| MS.gene046054.t1 | MTR_0931s0010 | 30.435 | 322 | 201 | 8 | 572 | 891 | 235 | 535 | 4.34e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046054.t1 | AT4G21490 | 69.203 | 552 | 163 | 4 | 549 | 1094 | 30 | 580 | 0.0 | 780 |
| MS.gene046054.t1 | AT4G21490 | 61.818 | 550 | 203 | 4 | 5 | 549 | 5 | 552 | 0.0 | 690 |
| MS.gene046054.t1 | AT4G05020 | 69.189 | 555 | 160 | 4 | 549 | 1094 | 30 | 582 | 0.0 | 776 |
| MS.gene046054.t1 | AT4G05020 | 61.121 | 553 | 204 | 6 | 5 | 549 | 5 | 554 | 0.0 | 681 |
| MS.gene046054.t1 | AT4G21490 | 69.203 | 552 | 162 | 5 | 549 | 1094 | 30 | 579 | 0.0 | 775 |
| MS.gene046054.t1 | AT4G21490 | 61.818 | 550 | 202 | 5 | 5 | 549 | 5 | 551 | 0.0 | 684 |
| MS.gene046054.t1 | AT2G20800 | 65.901 | 566 | 181 | 3 | 538 | 1094 | 20 | 582 | 0.0 | 763 |
| MS.gene046054.t1 | AT2G20800 | 58.887 | 557 | 218 | 6 | 1 | 549 | 1 | 554 | 0.0 | 651 |
| MS.gene046054.t1 | AT4G05020 | 64.865 | 592 | 160 | 5 | 549 | 1094 | 30 | 619 | 0.0 | 757 |
| MS.gene046054.t1 | AT4G05020 | 57.288 | 590 | 204 | 7 | 5 | 549 | 5 | 591 | 0.0 | 662 |
| MS.gene046054.t1 | AT4G28220 | 71.951 | 492 | 137 | 1 | 59 | 549 | 52 | 543 | 0.0 | 753 |
| MS.gene046054.t1 | AT4G28220 | 63.654 | 520 | 189 | 0 | 575 | 1094 | 52 | 571 | 0.0 | 713 |
| MS.gene046054.t1 | AT4G28220 | 70.419 | 453 | 133 | 1 | 59 | 510 | 52 | 504 | 0.0 | 676 |
| MS.gene046054.t1 | AT4G28220 | 61.454 | 454 | 175 | 0 | 575 | 1028 | 52 | 505 | 0.0 | 596 |
| MS.gene046054.t1 | AT2G29990 | 41.349 | 341 | 182 | 8 | 37 | 372 | 55 | 382 | 3.71e-62 | 221 |
| MS.gene046054.t1 | AT2G29990 | 39.118 | 340 | 183 | 9 | 560 | 889 | 57 | 382 | 1.35e-55 | 202 |
| MS.gene046054.t1 | AT1G07180 | 40.462 | 346 | 184 | 8 | 34 | 372 | 54 | 384 | 5.72e-60 | 215 |
| MS.gene046054.t1 | AT1G07180 | 38.415 | 328 | 180 | 8 | 569 | 889 | 72 | 384 | 2.39e-53 | 196 |
| MS.gene046054.t1 | AT1G07180 | 36.066 | 122 | 67 | 4 | 979 | 1094 | 394 | 510 | 1.83e-11 | 68.6 |
| MS.gene046054.t1 | AT5G08740 | 24.312 | 436 | 269 | 18 | 507 | 908 | 12 | 420 | 4.41e-12 | 70.5 |
| MS.gene046054.t1 | AT5G08740 | 23.373 | 415 | 265 | 13 | 5 | 391 | 31 | 420 | 5.87e-11 | 67.0 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAAAGGTATAAGCATTT+TGG | 0.113669 | 4.4:+57193470 | MS.gene046054:intron |
| CTCACCACTTCCTCTTTCTT+TGG | 0.150157 | 4.4:-57198518 | None:intergenic |
| TATCTTGACTTTATCTTTAA+TGG | 0.151541 | 4.4:-57191210 | None:intergenic |
| GAAATGGAGAAATAAAATTT+TGG | 0.179733 | 4.4:+57190521 | MS.gene046054:CDS |
| TTTCTACTCTTCCAGTTATA+AGG | 0.181494 | 4.4:+57191695 | MS.gene046054:CDS |
| AGCACTACCACTTTCTTTCT+TGG | 0.213188 | 4.4:-57195920 | None:intergenic |
| TTCTCTGGATTATGACTTCT+TGG | 0.237305 | 4.4:+57190630 | MS.gene046054:CDS |
| TTCATAAAATCGAGTATTTC+AGG | 0.240335 | 4.4:-57198595 | None:intergenic |
| AGATGGAATTGATGTGAAAT+TGG | 0.251162 | 4.4:+57198456 | MS.gene046054:CDS |
| CGGAAGGCCCTCTAAGGTTT+AGG | 0.253205 | 4.4:+57199599 | MS.gene046054:CDS |
| ACAAGTGACACTCGGTAATA+AGG | 0.258096 | 4.4:-57190043 | None:intergenic |
| TGGGGAAGGCGATTCGTATT+TGG | 0.259196 | 4.4:+57200433 | MS.gene046054:CDS |
| GAAAATCGTCGAGGTCCTTC+TGG | 0.265610 | 4.4:-57192760 | None:intergenic |
| TCCATAAAATCCCTTATAAC+TGG | 0.268000 | 4.4:-57191706 | None:intergenic |
| ATAATTTCTTCAAATCTTCT+TGG | 0.269593 | 4.4:-57191181 | None:intergenic |
| TGCTTTATGTGCAGACTAAA+AGG | 0.276588 | 4.4:+57191942 | MS.gene046054:intron |
| TTCTGCTTCTTTGTACTATC+AGG | 0.282569 | 4.4:+57188998 | MS.gene046054:CDS |
| TGATATCATGGACATATTTA+AGG | 0.307481 | 4.4:+57192321 | MS.gene046054:CDS |
| GGCTGCTACCAGTTTCCTTA+AGG | 0.325292 | 4.4:+57189957 | MS.gene046054:CDS |
| TATAAATCAGCGTAGAATTA+TGG | 0.331406 | 4.4:+57198820 | MS.gene046054:CDS |
| GGTCCGAAACATCATTAAAA+AGG | 0.335197 | 4.4:+57190098 | MS.gene046054:CDS |
| TTCGAATTCTTCTACAGTTA+AGG | 0.336831 | 4.4:-57192368 | None:intergenic |
| AGAAAAGAAATAGACATAGA+AGG | 0.337515 | 4.4:+57192499 | MS.gene046054:CDS |
| TGTTTATGTGATAGATTAAT+CGG | 0.340797 | 4.4:+57198723 | MS.gene046054:intron |
| TGCCCCATGGATTGGTTATC+TGG | 0.341582 | 4.4:+57191662 | MS.gene046054:CDS |
| TACCAGTTTCCTTAAGGGTT+TGG | 0.342817 | 4.4:+57189963 | MS.gene046054:CDS |
| CAGCTCAGCTTCCGGGAGAT+TGG | 0.344513 | 4.4:+57200216 | MS.gene046054:CDS |
| ACAAACAGCAGCTCAGCTTC+CGG | 0.350319 | 4.4:+57200208 | MS.gene046054:CDS |
| AAAGAATTTCAAAACGTTGT+TGG | 0.350665 | 4.4:+57199239 | MS.gene046054:CDS |
| AGCTCAGCTTCCGGGAGATT+GGG | 0.355497 | 4.4:+57200217 | MS.gene046054:CDS |
| AGCTTTGGTGGTATCCGATT+GGG | 0.357196 | 4.4:+57200414 | MS.gene046054:CDS |
| GGAGGCTTGCTCTTTCAAAA+AGG | 0.357921 | 4.4:-57197902 | None:intergenic |
| TGCCTCATGGGATGGTAGTT+TGG | 0.358988 | 4.4:+57198551 | MS.gene046054:CDS |
| TTCTACTCTTCCAGTTATAA+GGG | 0.363991 | 4.4:+57191696 | MS.gene046054:CDS |
| GCTGCTACCAGTTTCCTTAA+GGG | 0.367418 | 4.4:+57189958 | MS.gene046054:CDS |
| ATTCATACCTGTGCAGTTGC+TGG | 0.368331 | 4.4:-57192568 | None:intergenic |
| CCGGGAGATTGGGTTTCAAT+TGG | 0.368827 | 4.4:+57200227 | MS.gene046054:CDS |
| GCCATCAGTTTCATGCCTTC+AGG | 0.369539 | 4.4:+57199632 | MS.gene046054:CDS |
| TTCTTTAAGATCTAACATTC+CGG | 0.369690 | 4.4:-57199222 | None:intergenic |
| GATCGATGCTGCAGACAAAA+AGG | 0.375334 | 4.4:+57190561 | MS.gene046054:CDS |
| GGAAGGCCCTCTAAGGTTTA+GGG | 0.378458 | 4.4:+57199600 | MS.gene046054:CDS |
| TTTGGACAGTTTGCTCCTCT+CGG | 0.382469 | 4.4:+57200179 | MS.gene046054:CDS |
| TTGGACAGTTTGCTCCTCTC+GGG | 0.386811 | 4.4:+57200180 | MS.gene046054:CDS |
| CAGTCAGTGGTTGTGGTATT+CGG | 0.389525 | 4.4:+57200256 | MS.gene046054:CDS |
| TCAATGTCCACTTCTGTAGT+AGG | 0.392680 | 4.4:-57199356 | None:intergenic |
| ATCCAAACCCTTAAGGAAAC+TGG | 0.396227 | 4.4:-57189965 | None:intergenic |
| TACGAATCGCCTTCCCCAAT+CGG | 0.399877 | 4.4:-57200428 | None:intergenic |
| AATATCCGGAAGGCCCTCTA+AGG | 0.400293 | 4.4:+57199593 | MS.gene046054:CDS |
| AAAGTCGTGGTCCTTGGAAC+TGG | 0.400385 | 4.4:+57189931 | MS.gene046054:CDS |
| GTCACAGCACTCAATGGCTT+TGG | 0.409388 | 4.4:+57193558 | MS.gene046054:CDS |
| AGATTTACCTGAGCAGTTGC+AGG | 0.413278 | 4.4:-57199428 | None:intergenic |
| CCTTTCTGTTGCAGATTCCC+AGG | 0.415308 | 4.4:+57192534 | MS.gene046054:CDS |
| CAAACAGCAGCTCAGCTTCC+GGG | 0.415661 | 4.4:+57200209 | MS.gene046054:CDS |
| GGGATGGTAGTTTGGTCAAC+TGG | 0.419171 | 4.4:+57198559 | MS.gene046054:CDS |
| GAAACATATACTTGATTTGA+GGG | 0.422160 | 4.4:+57192447 | MS.gene046054:CDS |
| ATCATCGGTTTCGTCCCTTC+CGG | 0.425142 | 4.4:+57192794 | MS.gene046054:CDS |
| CAAGTGACACTCGGTAATAA+GGG | 0.426656 | 4.4:-57190042 | None:intergenic |
| ATTGAAACAGTCTGCAAGAT+AGG | 0.432669 | 4.4:-57199551 | None:intergenic |
| ATTGTTGGTGGTGGTCCAAC+TGG | 0.433243 | 4.4:+57197969 | MS.gene046054:CDS |
| GAAAAGAAATAGACATAGAA+GGG | 0.433481 | 4.4:+57192500 | MS.gene046054:CDS |
| AAGATAACACTAATTCAATC+TGG | 0.440272 | 4.4:+57191227 | MS.gene046054:CDS |
| CTAAACCTTAGAGGGCCTTC+CGG | 0.445137 | 4.4:-57199598 | None:intergenic |
| CCTGTTCCCCTAAACCTTAG+AGG | 0.445725 | 4.4:-57199607 | None:intergenic |
| TTGACTTTATCTTTAATGGT+TGG | 0.446296 | 4.4:-57191206 | None:intergenic |
| AGCAGAAAGTTGGAAGAGAA+AGG | 0.447754 | 4.4:-57188982 | None:intergenic |
| GTGCTTGGAACTGGTTGGGC+TGG | 0.448822 | 4.4:+57195938 | MS.gene046054:CDS |
| TGATGTGAAATTGGGATCAA+TGG | 0.449893 | 4.4:+57198465 | MS.gene046054:CDS |
| CCATTGGTCACAGCACTCAA+TGG | 0.455392 | 4.4:+57193552 | MS.gene046054:CDS |
| CAGCAGAACTACCTGGAGAC+TGG | 0.457833 | 4.4:+57193525 | MS.gene046054:CDS |
| CCTCTAAGGTTTAGGGGAAC+AGG | 0.458851 | 4.4:+57199607 | MS.gene046054:CDS |
| GATGGAATTGATGTGAAATT+GGG | 0.458874 | 4.4:+57198457 | MS.gene046054:CDS |
| GACACAGCAGTCAGTGGTTG+TGG | 0.459107 | 4.4:+57200249 | MS.gene046054:CDS |
| CTGGAGAACAAGAGCTTTGG+TGG | 0.459744 | 4.4:+57200402 | MS.gene046054:CDS |
| CCTGGAGGCTTTGTTGAAGA+AGG | 0.461816 | 4.4:-57188944 | None:intergenic |
| TGCAGACTGTTTCAATCGCA+TGG | 0.462033 | 4.4:+57199558 | MS.gene046054:CDS |
| AAAATGAAGGTGAAATCAAC+GGG | 0.465424 | 4.4:+57191625 | MS.gene046054:CDS |
| TTTCATTTGAGAATCAACTT+TGG | 0.465866 | 4.4:-57199399 | None:intergenic |
| AGCACGGAGCATCGTAGAAC+CGG | 0.466245 | 4.4:+57190077 | MS.gene046054:CDS |
| GTCTAATATTGAAAACTTAG+TGG | 0.466929 | 4.4:+57190594 | MS.gene046054:CDS |
| GTAGTTTGGTCAACTGGTAT+TGG | 0.467998 | 4.4:+57198565 | MS.gene046054:CDS |
| AGGGTGAGTGGTGAGGGCCC+TGG | 0.472699 | 4.4:-57188962 | None:intergenic |
| TTGCTCTGTGCCCCATGGAT+TGG | 0.473874 | 4.4:+57191654 | MS.gene046054:CDS |
| ATGAACCATCCAAACCCTTA+AGG | 0.478727 | 4.4:-57189972 | None:intergenic |
| TTTAAATAAATGTCCACTTG+TGG | 0.478762 | 4.4:-57199281 | None:intergenic |
| TTCTCTTCCACTGGTACAGA+AGG | 0.480719 | 4.4:-57197924 | None:intergenic |
| GGCTGATGATCTTCAATACT+AGG | 0.480765 | 4.4:-57189898 | None:intergenic |
| GGTAGTGCTTGGAACTGGTT+GGG | 0.480820 | 4.4:+57195934 | MS.gene046054:CDS |
| GATGAATGGTTGAGAGTAAA+GGG | 0.482352 | 4.4:+57191980 | MS.gene046054:CDS |
| AGATGGTATAGAAGTTCAAA+CGG | 0.484698 | 4.4:+57191567 | MS.gene046054:CDS |
| TTGCTGGAAGAGTCTTCACC+TGG | 0.485095 | 4.4:-57192552 | None:intergenic |
| CCTTCTTCAACAAAGCCTCC+AGG | 0.485422 | 4.4:+57188944 | MS.gene046054:CDS |
| TGATGAATGGTTGAGAGTAA+AGG | 0.485744 | 4.4:+57191979 | MS.gene046054:CDS |
| AGTACAAAGAAGCAGAAAGT+TGG | 0.485887 | 4.4:-57188992 | None:intergenic |
| TATTACCGAGTGTCACTTGT+GGG | 0.486394 | 4.4:+57190046 | MS.gene046054:CDS |
| GGAGCATGCCCACTTCTTGA+AGG | 0.488288 | 4.4:+57196469 | MS.gene046054:CDS |
| AAATCTACCTGCAACTGCTC+AGG | 0.488833 | 4.4:+57199421 | MS.gene046054:CDS |
| CAGCTGGAGAACAAGAGCTT+TGG | 0.491737 | 4.4:+57200399 | MS.gene046054:CDS |
| AGTTTCCTTAAGGGTTTGGA+TGG | 0.492808 | 4.4:+57189967 | MS.gene046054:CDS |
| GATATCTCATCCAAAGAAAG+AGG | 0.496111 | 4.4:+57198508 | MS.gene046054:CDS |
| GCGGTTTGCTCTGTGCCCCA+TGG | 0.497062 | 4.4:+57191649 | MS.gene046054:CDS |
| CAAGCAGCAGCAGAACTACC+TGG | 0.498700 | 4.4:+57193518 | MS.gene046054:CDS |
| ATTTGGGTGAATATGACGAT+TGG | 0.499768 | 4.4:+57188919 | None:intergenic |
| TGTGGTATTCGGTATATGTA+AGG | 0.500256 | 4.4:+57200267 | MS.gene046054:CDS |
| TTTAGATAGTATTCAACTTG+AGG | 0.503159 | 4.4:-57192421 | None:intergenic |
| TGATTACTTAGTAATAGCTA+TGG | 0.503978 | 4.4:+57196409 | MS.gene046054:CDS |
| GTTGTTGGAGGAGGTCCAAC+TGG | 0.504579 | 4.4:+57191125 | MS.gene046054:CDS |
| GGAATTGTGTGAGAAATATC+CGG | 0.505970 | 4.4:+57199579 | MS.gene046054:CDS |
| GAGCTTTGGTGGTATCCGAT+TGG | 0.506991 | 4.4:+57200413 | MS.gene046054:CDS |
| AAGGCAGACAAGGACAATTC+CGG | 0.507472 | 4.4:+57199203 | MS.gene046054:CDS |
| CAATGTCCACTTCTGTAGTA+GGG | 0.509746 | 4.4:-57199355 | None:intergenic |
| GCAGAAAGTTGGAAGAGAAA+GGG | 0.510279 | 4.4:-57188981 | None:intergenic |
| TTTGGGCAATTTGCTCCACT+GGG | 0.512737 | 4.4:+57193488 | MS.gene046054:CDS |
| GGATTGGTTATCTGGTCCAC+TGG | 0.513081 | 4.4:+57191670 | MS.gene046054:CDS |
| GAACAAAAGTTCAAAAGAGA+TGG | 0.513759 | 4.4:+57198439 | MS.gene046054:CDS |
| AGAAACATATACTTGATTTG+AGG | 0.514547 | 4.4:+57192446 | MS.gene046054:CDS |
| AATAAATCAACGTAAAATCA+TGG | 0.516150 | 4.4:+57192039 | MS.gene046054:CDS |
| TCGTGGTCCTTGGAACTGGA+TGG | 0.516860 | 4.4:+57189935 | MS.gene046054:CDS |
| CCTGGAGACTGGGTTTCCAT+TGG | 0.517640 | 4.4:+57193536 | MS.gene046054:CDS |
| AGAGAAAGGGTGAGTGGTGA+GGG | 0.520614 | 4.4:-57188968 | None:intergenic |
| TGGTGGTATCCGATTGGGGA+AGG | 0.520931 | 4.4:+57200419 | MS.gene046054:CDS |
| GGTGGAAGTTTAGCTGCATA+TGG | 0.521005 | 4.4:+57195857 | MS.gene046054:CDS |
| ATTGAAAACTTAGTGGGAAG+TGG | 0.521615 | 4.4:+57190601 | MS.gene046054:CDS |
| TCTAATATTGAAAACTTAGT+GGG | 0.522285 | 4.4:+57190595 | MS.gene046054:CDS |
| CATGCAGCAAACTAGTCAGC+TGG | 0.522547 | 4.4:+57200383 | MS.gene046054:intron |
| TGACAAGGAAATTAAAATGA+AGG | 0.523372 | 4.4:+57191612 | MS.gene046054:CDS |
| AGATCAGCATATAGTGGTAG+TGG | 0.526131 | 4.4:+57195887 | MS.gene046054:CDS |
| AGAAAGAAAGTGGTAGTGCT+TGG | 0.526927 | 4.4:+57195923 | MS.gene046054:CDS |
| CTGCTTCTAGGATGATATCA+TGG | 0.528268 | 4.4:+57192309 | MS.gene046054:intron |
| GAGGTTGTTACTATGCCTCA+TGG | 0.528676 | 4.4:+57198538 | MS.gene046054:CDS |
| GGATCAATGGTTGTCAAAGT+TGG | 0.530531 | 4.4:+57198478 | MS.gene046054:CDS |
| TCATCCAAAGAAAGAGGAAG+TGG | 0.530620 | 4.4:+57198514 | MS.gene046054:CDS |
| CTGTTCCCCTAAACCTTAGA+GGG | 0.533525 | 4.4:-57199606 | None:intergenic |
| GAGAAGAAGTTTACAAGAGA+TGG | 0.536920 | 4.4:+57191550 | MS.gene046054:CDS |
| CCAATGGAAACCCAGTCTCC+AGG | 0.538744 | 4.4:-57193536 | None:intergenic |
| GTGAGTGGTGAGGGCCCTGG+AGG | 0.538772 | 4.4:-57188959 | None:intergenic |
| TACTTGATTTGAGGGTTCTG+TGG | 0.539810 | 4.4:+57192455 | MS.gene046054:CDS |
| CTGGGAATCTGCAACAGAAA+GGG | 0.543531 | 4.4:-57192533 | None:intergenic |
| TGCTCCTCTTCAGATTGACT+CGG | 0.543713 | 4.4:-57191080 | None:intergenic |
| AAGATTACTCTCCTTGAGGC+TGG | 0.544003 | 4.4:+57198071 | MS.gene046054:CDS |
| AGCAGAACTACCTGGAGACT+GGG | 0.544027 | 4.4:+57193526 | MS.gene046054:CDS |
| CCTGGGAATCTGCAACAGAA+AGG | 0.545647 | 4.4:-57192534 | None:intergenic |
| TTGAGATTTACTTAGCAAAG+TGG | 0.547247 | 4.4:-57199327 | None:intergenic |
| GCAGACTAAAAGGCATGTAC+TGG | 0.547750 | 4.4:+57191952 | MS.gene046054:intron |
| GCTGCTTGCTCTCCACCCAG+TGG | 0.548772 | 4.4:-57193503 | None:intergenic |
| CCAATTGAAACCCAATCTCC+CGG | 0.553076 | 4.4:-57200227 | None:intergenic |
| CGTGGTCCTTGGAACTGGAT+GGG | 0.554266 | 4.4:+57189936 | MS.gene046054:CDS |
| TTTCAGGATCTGGACATCAT+CGG | 0.554643 | 4.4:+57192779 | MS.gene046054:CDS |
| GACTTCTTGGTTGTAGCAGT+AGG | 0.555062 | 4.4:+57190643 | MS.gene046054:CDS |
| GATGAATGGCTAAGGGTGGA+AGG | 0.556348 | 4.4:+57198761 | MS.gene046054:CDS |
| TTCCACCCTTAGCCATTCAT+CGG | 0.557506 | 4.4:-57198759 | None:intergenic |
| TCAAAGACCAAGAAAGAAAG+TGG | 0.557967 | 4.4:+57195913 | MS.gene046054:CDS |
| GATGGTATAGAAGTTCAAAC+GGG | 0.560775 | 4.4:+57191568 | MS.gene046054:CDS |
| TTATTACCGAGTGTCACTTG+TGG | 0.560816 | 4.4:+57190045 | MS.gene046054:CDS |
| TGTGAAGATGTGTTTGCCAT+TGG | 0.561141 | 4.4:+57192004 | MS.gene046054:CDS |
| TGGACCAGATAACCAATCCA+TGG | 0.561236 | 4.4:-57191666 | None:intergenic |
| GATAGCAGATCAGCATATAG+TGG | 0.561583 | 4.4:+57195881 | MS.gene046054:CDS |
| TGGTAGTGCTTGGAACTGGT+TGG | 0.561852 | 4.4:+57195933 | MS.gene046054:CDS |
| GACTCTTCCAGCAACTGCAC+AGG | 0.562506 | 4.4:+57192561 | MS.gene046054:CDS |
| TGTGACAACATCTATGCTCT+AGG | 0.563079 | 4.4:+57198785 | MS.gene046054:CDS |
| TGTTACTATGCCTCATGGGA+TGG | 0.563772 | 4.4:+57198543 | MS.gene046054:CDS |
| TAAAATGAAGGTGAAATCAA+CGG | 0.564552 | 4.4:+57191624 | MS.gene046054:CDS |
| AGAAGAATTCGAAGAAGTGA+TGG | 0.565316 | 4.4:+57192378 | MS.gene046054:CDS |
| CTTGGAAATTGCAGTGGTGG+AGG | 0.566583 | 4.4:+57189835 | MS.gene046054:intron |
| AGATATGATCGCCAGCCTCA+AGG | 0.566773 | 4.4:-57198082 | None:intergenic |
| AGACATAGAAGGGTTTAAGC+TGG | 0.568776 | 4.4:+57192510 | MS.gene046054:CDS |
| TTTGGTATTCTGTATATGCA+AGG | 0.572972 | 4.4:+57193576 | MS.gene046054:CDS |
| GCTGCAAATTCAACACCAGT+TGG | 0.573463 | 4.4:-57191140 | None:intergenic |
| AGAATGCCCTACTACAGAAG+TGG | 0.574073 | 4.4:+57199349 | MS.gene046054:CDS |
| CTTCTTCAACAAAGCCTCCA+GGG | 0.574335 | 4.4:+57188945 | MS.gene046054:CDS |
| GCAGCAAACTCTACTCCAGT+TGG | 0.575986 | 4.4:-57197984 | None:intergenic |
| GATTGCTTACCTTCAAGAAG+TGG | 0.579070 | 4.4:-57196478 | None:intergenic |
| GGACCAGATAACCAATCCAT+GGG | 0.579782 | 4.4:-57191665 | None:intergenic |
| TACTAAGTAATCATAATCAA+CGG | 0.580809 | 4.4:-57196399 | None:intergenic |
| CAAGTAACACTTGGTAGCAA+AGG | 0.581121 | 4.4:-57196040 | None:intergenic |
| CCATTGAGTGCTGTGACCAA+TGG | 0.581333 | 4.4:-57193552 | None:intergenic |
| GTTGGAAGAGAAAGGGTGAG+TGG | 0.581970 | 4.4:-57188974 | None:intergenic |
| GTGCATTGGTGACCGATGAA+TGG | 0.583214 | 4.4:+57198747 | MS.gene046054:CDS |
| TGGTGACCGATGAATGGCTA+AGG | 0.583842 | 4.4:+57198753 | MS.gene046054:CDS |
| CAATTGGACACAGCAGTCAG+TGG | 0.584037 | 4.4:+57200243 | MS.gene046054:CDS |
| AAAGTGGTAGTGCTTGGAAC+TGG | 0.584146 | 4.4:+57195929 | MS.gene046054:CDS |
| GCTTTGGTGGTATCCGATTG+GGG | 0.584873 | 4.4:+57200415 | MS.gene046054:CDS |
| TATTGATGAACAATCACCAA+TGG | 0.585097 | 4.4:-57192020 | None:intergenic |
| GATTACTTAGTAATAGCTAT+GGG | 0.585194 | 4.4:+57196410 | MS.gene046054:CDS |
| AGGTTGTTACTATGCCTCAT+GGG | 0.590654 | 4.4:+57198539 | MS.gene046054:CDS |
| GAAGGCCCTCTAAGGTTTAG+GGG | 0.591118 | 4.4:+57199601 | MS.gene046054:CDS |
| GGGCAATTTGCTCCACTGGG+TGG | 0.593754 | 4.4:+57193491 | MS.gene046054:CDS |
| AAGAATGGGGTTTACCGGAA+GGG | 0.595986 | 4.4:-57192808 | None:intergenic |
| GTCAATCTGAAGAGGAGCAA+AGG | 0.596000 | 4.4:+57191084 | MS.gene046054:CDS |
| TTGACATGGTCTATAAGAGA+AGG | 0.596187 | 4.4:-57198050 | None:intergenic |
| ATTGCTTACCTTCAAGAAGT+GGG | 0.597097 | 4.4:-57196477 | None:intergenic |
| ATAGATTAATCGGCGTGCAT+TGG | 0.598331 | 4.4:+57198733 | MS.gene046054:intron |
| ATGTACTGGCAACTGATGAA+TGG | 0.599584 | 4.4:+57191966 | MS.gene046054:CDS |
| CGCGATTAAAGCAACTTGCT+AGG | 0.599701 | 4.4:-57192717 | None:intergenic |
| TGGGCATGCTCCTCAACACC+AGG | 0.600436 | 4.4:-57196458 | None:intergenic |
| TGGACAGTTTGCTCCTCTCG+GGG | 0.600681 | 4.4:+57200181 | MS.gene046054:CDS |
| TGTAATAGATTGTCTTGAGA+AGG | 0.601188 | 4.4:+57191049 | MS.gene046054:CDS |
| TGACAGTTCTCCTTAACACC+AGG | 0.601556 | 4.4:-57190691 | None:intergenic |
| CAAGGAGAGTAATCTTGACA+TGG | 0.604814 | 4.4:-57198064 | None:intergenic |
| GAAGGTGAAATCAACGGGAG+CGG | 0.608655 | 4.4:+57191630 | MS.gene046054:CDS |
| AAGAGAAAGGGTGAGTGGTG+AGG | 0.610058 | 4.4:-57188969 | None:intergenic |
| TTGCTACCAAGTGTTACTTG+TGG | 0.612226 | 4.4:+57196043 | MS.gene046054:CDS |
| CTTCCACTGGTACAGAAGGG+AGG | 0.623592 | 4.4:-57197920 | None:intergenic |
| TCTTCCGAGTCAATCTGAAG+AGG | 0.623685 | 4.4:+57191076 | MS.gene046054:CDS |
| ATATAGGTTGCTGCGCAACA+AGG | 0.625684 | 4.4:+57192688 | MS.gene046054:intron |
| AAATTGCAGTGGTGGAGGTG+TGG | 0.626731 | 4.4:+57189840 | MS.gene046054:intron |
| TTCCAGGTAGCTGCTCAACA+AGG | 0.628578 | 4.4:+57199526 | MS.gene046054:intron |
| ATGAATGGCTAAGGGTGGAA+GGG | 0.629064 | 4.4:+57198762 | MS.gene046054:CDS |
| GCTGTTTGTTCTGCCCCGAG+AGG | 0.629289 | 4.4:-57200194 | None:intergenic |
| TCTCTTCCACTGGTACAGAA+GGG | 0.629584 | 4.4:-57197923 | None:intergenic |
| TAGCAGCCCATCCAGTTCCA+AGG | 0.629847 | 4.4:-57189942 | None:intergenic |
| CTTGTGGGTCAGTTGAAGCA+CGG | 0.632171 | 4.4:+57190061 | MS.gene046054:CDS |
| AAGCCTCCCTTCTGTACCAG+TGG | 0.633348 | 4.4:+57197917 | MS.gene046054:CDS |
| TGCTGGAAGAGTCTTCACCT+GGG | 0.634925 | 4.4:-57192551 | None:intergenic |
| GATATTTAACAAGGCAGACA+AGG | 0.635838 | 4.4:+57199193 | MS.gene046054:CDS |
| TATTGAGAGGTATCCACAAG+TGG | 0.637539 | 4.4:+57199268 | MS.gene046054:CDS |
| ACCTGAAGGCATGAAACTGA+TGG | 0.638521 | 4.4:-57199633 | None:intergenic |
| GATACTGAAGAGCATCCAGA+AGG | 0.642109 | 4.4:+57192745 | MS.gene046054:CDS |
| TATAGCTGTGATATTTAACA+AGG | 0.657322 | 4.4:+57199184 | MS.gene046054:CDS |
| GACAGTTCTCCTTAACACCA+GGG | 0.658869 | 4.4:-57190690 | None:intergenic |
| TTGTTGGCGACATTATTGAG+AGG | 0.659255 | 4.4:+57199255 | MS.gene046054:CDS |
| GAAGAATCAAATGAAAGACA+TGG | 0.659440 | 4.4:+57199304 | MS.gene046054:CDS |
| ACAGTGCCACAAGTAACACT+TGG | 0.664843 | 4.4:-57196049 | None:intergenic |
| GACCGATGAATGGCTAAGGG+TGG | 0.672269 | 4.4:+57198757 | MS.gene046054:CDS |
| TGTCAAGATTACTCTCCTTG+AGG | 0.674606 | 4.4:+57198067 | MS.gene046054:CDS |
| TAATCACTTATAGAGTGTCG+AGG | 0.680994 | 4.4:+57191004 | MS.gene046054:intron |
| ACTGACCCACAAGTGACACT+CGG | 0.681921 | 4.4:-57190051 | None:intergenic |
| TGTCATCAACACTCATAACA+CGG | 0.684459 | 4.4:-57191594 | None:intergenic |
| TGTTACTTGTGGCACTGTGG+AGG | 0.689954 | 4.4:+57196054 | MS.gene046054:CDS |
| TTGTGTGAGAAATATCCGGA+AGG | 0.690898 | 4.4:+57199583 | MS.gene046054:CDS |
| TGTTATGAGTGTTGATGACA+AGG | 0.693444 | 4.4:+57191597 | MS.gene046054:CDS |
| GGTGACCGATGAATGGCTAA+GGG | 0.698885 | 4.4:+57198754 | MS.gene046054:CDS |
| TGGAAGAGTAGAAATGCCAG+TGG | 0.705182 | 4.4:-57191686 | None:intergenic |
| CAAAGAAAGAGGAAGTGGTG+AGG | 0.709326 | 4.4:+57198519 | MS.gene046054:CDS |
| ACAGTTCTCCTTAACACCAG+GGG | 0.714844 | 4.4:-57190689 | None:intergenic |
| GACCAAACTACCATCCCATG+AGG | 0.728671 | 4.4:-57198553 | None:intergenic |
| AAGTGTTACTTGTGGCACTG+TGG | 0.731519 | 4.4:+57196051 | MS.gene046054:CDS |
| GTAAATGCAAAGTAGTTACG+AGG | 0.734579 | 4.4:-57190018 | None:intergenic |
| GTTCTGTGGAACGACCCACA+AGG | 0.743834 | 4.4:+57192469 | MS.gene046054:CDS |
| CCAGATCCTGAAAATCGTCG+AGG | 0.744477 | 4.4:-57192769 | None:intergenic |
| GTGAATGCAAAATAGTTACG+TGG | 0.750279 | 4.4:-57196016 | None:intergenic |
| GACCAGATAACCAATCCATG+GGG | 0.771259 | 4.4:-57191664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 57188931 | 57200477 | 57188931 | ID=MS.gene046054 |
| chr4.4 | mRNA | 57188931 | 57200477 | 57188931 | ID=MS.gene046054.t1;Parent=MS.gene046054 |
| chr4.4 | exon | 57188931 | 57189019 | 57188931 | ID=MS.gene046054.t1.exon1;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57188931 | 57189019 | 57188931 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57189849 | 57190119 | 57189849 | ID=MS.gene046054.t1.exon2;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57189849 | 57190119 | 57189849 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57190520 | 57190723 | 57190520 | ID=MS.gene046054.t1.exon3;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57190520 | 57190723 | 57190520 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57191017 | 57191267 | 57191017 | ID=MS.gene046054.t1.exon4;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57191017 | 57191267 | 57191017 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57191522 | 57191741 | 57191522 | ID=MS.gene046054.t1.exon5;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57191522 | 57191741 | 57191522 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57191956 | 57192060 | 57191956 | ID=MS.gene046054.t1.exon6;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57191956 | 57192060 | 57191956 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57192319 | 57192582 | 57192319 | ID=MS.gene046054.t1.exon7;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57192319 | 57192582 | 57192319 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57192694 | 57192815 | 57192694 | ID=MS.gene046054.t1.exon8;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57192694 | 57192815 | 57192694 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57193478 | 57193597 | 57193478 | ID=MS.gene046054.t1.exon9;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57193478 | 57193597 | 57193478 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57195856 | 57196117 | 57195856 | ID=MS.gene046054.t1.exon10;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57195856 | 57196117 | 57195856 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57196284 | 57196490 | 57196284 | ID=MS.gene046054.t1.exon11;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57196284 | 57196490 | 57196284 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57197861 | 57198111 | 57197861 | ID=MS.gene046054.t1.exon12;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57197861 | 57198111 | 57197861 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57198411 | 57198630 | 57198411 | ID=MS.gene046054.t1.exon13;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57198411 | 57198630 | 57198411 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57198737 | 57198841 | 57198737 | ID=MS.gene046054.t1.exon14;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57198737 | 57198841 | 57198737 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57199179 | 57199442 | 57199179 | ID=MS.gene046054.t1.exon15;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57199179 | 57199442 | 57199179 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57199532 | 57199653 | 57199532 | ID=MS.gene046054.t1.exon16;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57199532 | 57199653 | 57199532 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57200169 | 57200288 | 57200169 | ID=MS.gene046054.t1.exon17;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57200169 | 57200288 | 57200169 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| chr4.4 | exon | 57200390 | 57200477 | 57200390 | ID=MS.gene046054.t1.exon18;Parent=MS.gene046054.t1 |
| chr4.4 | CDS | 57200390 | 57200477 | 57200390 | ID=cds.MS.gene046054.t1;Parent=MS.gene046054.t1 |
| Gene Sequence |
| Protein sequence |
