Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009833.t1 | XP_003615703.2 | 98 | 501 | 6 | 1 | 1 | 497 | 1 | 501 | 1.30E-286 | 995 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009833.t1 | O80874 | 74.0 | 508 | 121 | 2 | 1 | 497 | 1 | 508 | 6.5e-223 | 774.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009833.t1 | G7JZJ2 | 98.0 | 501 | 6 | 1 | 1 | 497 | 1 | 501 | 9.2e-287 | 995.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009833 | MS.gene57021 | PPI |
| MS.gene048610 | MS.gene009833 | PPI |
| MS.gene02306 | MS.gene009833 | PPI |
| MS.gene009833 | MS.gene069940 | PPI |
| MS.gene009833 | MS.gene018389 | PPI |
| MS.gene009833 | MS.gene052562 | PPI |
| MS.gene035652 | MS.gene009833 | PPI |
| MS.gene32211 | MS.gene009833 | PPI |
| MS.gene009833 | MS.gene53986 | PPI |
| MS.gene009833 | MS.gene066720 | PPI |
| MS.gene064199 | MS.gene009833 | PPI |
| MS.gene009833 | MS.gene012456 | PPI |
| MS.gene046054 | MS.gene009833 | PPI |
| MS.gene57946 | MS.gene009833 | PPI |
| MS.gene01745 | MS.gene009833 | PPI |
| MS.gene048480 | MS.gene009833 | PPI |
| MS.gene009833 | MS.gene03971 | PPI |
| MS.gene50180 | MS.gene009833 | PPI |
| MS.gene01336 | MS.gene009833 | PPI |
| MS.gene009833 | MS.gene002362 | PPI |
| MS.gene009833 | MS.gene048610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009833.t1 | MTR_5g071250 | 98.004 | 501 | 6 | 1 | 1 | 497 | 1 | 501 | 0.0 | 1012 |
| MS.gene009833.t1 | MTR_5g071250 | 97.704 | 392 | 5 | 1 | 1 | 388 | 1 | 392 | 0.0 | 788 |
| MS.gene009833.t1 | MTR_3g464380 | 77.228 | 505 | 106 | 3 | 1 | 497 | 1 | 504 | 0.0 | 785 |
| MS.gene009833.t1 | MTR_4g090580 | 76.327 | 452 | 107 | 0 | 46 | 497 | 92 | 543 | 0.0 | 748 |
| MS.gene009833.t1 | MTR_4g045997 | 39.945 | 363 | 198 | 9 | 24 | 371 | 15 | 372 | 2.49e-75 | 247 |
| MS.gene009833.t1 | MTR_4g045997 | 39.945 | 363 | 198 | 9 | 24 | 371 | 15 | 372 | 4.85e-75 | 247 |
| MS.gene009833.t1 | MTR_4g045997 | 36.957 | 138 | 73 | 4 | 369 | 497 | 445 | 577 | 3.03e-15 | 79.0 |
| MS.gene009833.t1 | MTR_2g011730 | 41.486 | 323 | 176 | 7 | 59 | 371 | 51 | 370 | 3.03e-73 | 242 |
| MS.gene009833.t1 | MTR_2g011730 | 36.667 | 120 | 67 | 2 | 382 | 497 | 464 | 578 | 6.21e-13 | 71.6 |
| MS.gene009833.t1 | MTR_4g091240 | 40.867 | 323 | 178 | 7 | 59 | 371 | 51 | 370 | 3.38e-72 | 239 |
| MS.gene009833.t1 | MTR_4g091240 | 35.833 | 120 | 68 | 2 | 382 | 497 | 464 | 578 | 2.32e-12 | 69.7 |
| MS.gene009833.t1 | MTR_4g045993 | 40.179 | 336 | 179 | 8 | 49 | 371 | 38 | 364 | 1.92e-70 | 235 |
| MS.gene009833.t1 | MTR_4g045993 | 33.058 | 121 | 72 | 2 | 381 | 497 | 454 | 569 | 8.92e-11 | 64.7 |
| MS.gene009833.t1 | MTR_4g091240 | 37.218 | 266 | 156 | 6 | 116 | 371 | 2 | 266 | 9.46e-50 | 177 |
| MS.gene009833.t1 | MTR_4g091240 | 35.833 | 120 | 68 | 2 | 382 | 497 | 360 | 474 | 2.24e-12 | 69.3 |
| MS.gene009833.t1 | MTR_0931s0010 | 28.802 | 434 | 271 | 11 | 68 | 497 | 243 | 642 | 5.57e-36 | 142 |
| MS.gene009833.t1 | MTR_8g094730 | 25.821 | 457 | 284 | 16 | 58 | 486 | 83 | 512 | 1.20e-16 | 83.2 |
| MS.gene009833.t1 | MTR_8g094730 | 25.602 | 457 | 285 | 15 | 58 | 486 | 83 | 512 | 1.37e-16 | 82.8 |
| MS.gene009833.t1 | MTR_8g094730 | 26.844 | 339 | 207 | 11 | 167 | 486 | 79 | 395 | 5.39e-13 | 71.2 |
| MS.gene009833.t1 | MTR_8g094730 | 25.956 | 366 | 230 | 13 | 58 | 395 | 83 | 435 | 6.12e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009833.t1 | AT2G29990 | 74.016 | 508 | 121 | 2 | 1 | 497 | 1 | 508 | 0.0 | 766 |
| MS.gene009833.t1 | AT1G07180 | 74.743 | 487 | 108 | 1 | 26 | 497 | 24 | 510 | 0.0 | 752 |
| MS.gene009833.t1 | AT4G28220 | 40.184 | 326 | 175 | 8 | 63 | 375 | 52 | 370 | 3.39e-73 | 240 |
| MS.gene009833.t1 | AT4G28220 | 40.184 | 326 | 175 | 8 | 63 | 375 | 52 | 370 | 1.74e-72 | 240 |
| MS.gene009833.t1 | AT4G28220 | 36.066 | 122 | 67 | 3 | 381 | 497 | 456 | 571 | 1.78e-12 | 70.1 |
| MS.gene009833.t1 | AT4G21490 | 38.827 | 358 | 208 | 6 | 43 | 392 | 38 | 392 | 1.16e-68 | 230 |
| MS.gene009833.t1 | AT4G21490 | 38.827 | 358 | 207 | 6 | 43 | 392 | 38 | 391 | 1.53e-68 | 230 |
| MS.gene009833.t1 | AT4G05020 | 41.121 | 321 | 177 | 6 | 59 | 371 | 57 | 373 | 4.10e-67 | 226 |
| MS.gene009833.t1 | AT4G05020 | 34.167 | 120 | 70 | 2 | 382 | 497 | 468 | 582 | 2.82e-11 | 66.2 |
| MS.gene009833.t1 | AT4G05020 | 41.121 | 321 | 177 | 6 | 59 | 371 | 57 | 373 | 1.46e-66 | 226 |
| MS.gene009833.t1 | AT2G20800 | 34.346 | 428 | 223 | 10 | 10 | 409 | 5 | 402 | 8.36e-61 | 209 |
| MS.gene009833.t1 | AT2G20800 | 36.364 | 121 | 68 | 2 | 381 | 497 | 467 | 582 | 3.00e-13 | 72.4 |
Find 139 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTCCACCAGGAGATTT+AGG | 0.197104 | 5.3:+56556468 | None:intergenic |
| GATGAAGGGTTGGTGGTGTT+GGG | 0.253970 | 5.3:+56560598 | None:intergenic |
| GGAGCACAACCCACCACTTT+TGG | 0.268489 | 5.3:-56557383 | MS.gene009833:CDS |
| GATTCTATGTAGCTATTAAC+TGG | 0.277448 | 5.3:-56555159 | MS.gene009833:CDS |
| TTCCATATGGGTTGTTGGTT+TGG | 0.280912 | 5.3:-56556536 | MS.gene009833:CDS |
| AGATGAAGGGTTGGTGGTGT+TGG | 0.293102 | 5.3:+56560597 | None:intergenic |
| AAAGATACCTCATGTTTATC+AGG | 0.295293 | 5.3:+56560235 | None:intergenic |
| ATGAAGGGTTGGTGGTGTTG+GGG | 0.305167 | 5.3:+56560599 | None:intergenic |
| GGGTTGTTGGTTTGGTCTAC+TGG | 0.306576 | 5.3:-56556528 | MS.gene009833:CDS |
| TTCTTTCTTGCTAATTGTAC+TGG | 0.330871 | 5.3:-56560265 | MS.gene009833:CDS |
| ACCTTCCACCAGGAGATTTA+GGG | 0.336747 | 5.3:+56556469 | None:intergenic |
| TGATTTGGATGCAGGGATTT+CGG | 0.349898 | 5.3:-56557190 | MS.gene009833:intron |
| TGAAGGGTTGGTGGTGTTGG+GGG | 0.359640 | 5.3:+56560600 | None:intergenic |
| AGATCCAGTGAGTGGATAAA+AGG | 0.364515 | 5.3:+56556492 | None:intergenic |
| GATAAGTTAGTAATTGCATT+AGG | 0.372684 | 5.3:-56557404 | MS.gene009833:CDS |
| TGAGGTTCCATATGGGTTGT+TGG | 0.390030 | 5.3:-56556541 | MS.gene009833:CDS |
| GAGAGAAGAGTGAGAGATGA+AGG | 0.394015 | 5.3:+56560583 | None:intergenic |
| AAGCCACGCGTGGTGGTTCT+CGG | 0.403632 | 5.3:-56560484 | MS.gene009833:CDS |
| GCACCGGTTGGGCCGGATGC+AGG | 0.407372 | 5.3:-56560462 | MS.gene009833:CDS |
| GTACAAGATATCTTCTCAAT+AGG | 0.408338 | 5.3:-56556146 | MS.gene009833:CDS |
| GAACCTGCATCCGGCCCAAC+CGG | 0.411504 | 5.3:+56560459 | None:intergenic |
| GCTGTCTGCACGGCCTCCAT+TGG | 0.418506 | 5.3:+56555531 | None:intergenic |
| TAAAGCTCACCTTTGTCAAC+TGG | 0.420834 | 5.3:+56556733 | None:intergenic |
| GAAGGGTTGGTGGTGTTGGG+GGG | 0.423190 | 5.3:+56560601 | None:intergenic |
| GCGAACCGGAGCGGTTGAAC+CGG | 0.430398 | 5.3:+56560540 | None:intergenic |
| GTTCTCGGCACCGGTTGGGC+CGG | 0.434816 | 5.3:-56560469 | MS.gene009833:CDS |
| CAACTGTTGCCATGCTTCCA+AGG | 0.436763 | 5.3:+56555467 | None:intergenic |
| TTGATGATGTCTGACGTTCC+AGG | 0.436902 | 5.3:-56557278 | MS.gene009833:intron |
| CGCGTGGTGGTTCTCGGCAC+CGG | 0.440404 | 5.3:-56560478 | MS.gene009833:CDS |
| TGCAATTACTAACTTATCAT+AGG | 0.442331 | 5.3:+56557409 | None:intergenic |
| GGATGCAGGGATTTCGGAAG+AGG | 0.444020 | 5.3:-56557184 | MS.gene009833:intron |
| CCTACGGGAGTTGAATTTAG+TGG | 0.445405 | 5.3:-56557120 | MS.gene009833:CDS |
| CGCTTCTCCACTTCAACACC+CGG | 0.450000 | 5.3:-56560559 | MS.gene009833:CDS |
| GAACACAGACACTGGATCCT+TGG | 0.451339 | 5.3:-56557445 | MS.gene009833:CDS |
| TATCCATGTTACTTTGATTG+AGG | 0.453761 | 5.3:-56557037 | MS.gene009833:intron |
| GACCAAACCAACAACCCATA+TGG | 0.456250 | 5.3:+56556534 | None:intergenic |
| AAGAGTGAGAGATGAAGGGT+TGG | 0.459682 | 5.3:+56560588 | None:intergenic |
| ATCTAACCCGTGTCATTAGC+TGG | 0.460079 | 5.3:-56555189 | MS.gene009833:CDS |
| CACCTTTGTCAACTGGTTGG+TGG | 0.460527 | 5.3:+56556740 | None:intergenic |
| GCAGGTTGAATCCTAGCAAC+AGG | 0.465923 | 5.3:+56560313 | None:intergenic |
| CCAGGTTCTTTGGAAATAGC+AGG | 0.466685 | 5.3:+56560295 | None:intergenic |
| TTGGTTTGGTCTACTGGTGT+TGG | 0.469540 | 5.3:-56556522 | MS.gene009833:CDS |
| GATGGTACTGAGGTTCCATA+TGG | 0.473808 | 5.3:-56556549 | MS.gene009833:CDS |
| TGAGTGGCTTCGTGTTCCTT+CGG | 0.474068 | 5.3:-56556168 | MS.gene009833:CDS |
| TCCTTTCATGAACCTGCATC+CGG | 0.474458 | 5.3:+56560450 | None:intergenic |
| CCGGTTCGCTATGCGGCTCT+CGG | 0.474842 | 5.3:-56560526 | MS.gene009833:CDS |
| CCGAGAGCCGCATAGCGAAC+CGG | 0.477016 | 5.3:+56560526 | None:intergenic |
| CACTGTGTGGTTGTCGGAGG+TGG | 0.479951 | 5.3:-56557144 | MS.gene009833:CDS |
| CTGGATCTCCCTAAATCTCC+TGG | 0.483676 | 5.3:-56556477 | MS.gene009833:CDS |
| GGTGGTTCTCGGCACCGGTT+GGG | 0.487204 | 5.3:-56560473 | MS.gene009833:CDS |
| TTTCTCCTACAGGATGCAAA+AGG | 0.488236 | 5.3:-56555259 | MS.gene009833:intron |
| ATGCAGGTTCATGAAAGGAT+TGG | 0.488272 | 5.3:-56560446 | MS.gene009833:CDS |
| AAAGTTACTTGGGCAAGAGC+TGG | 0.488874 | 5.3:+56556080 | None:intergenic |
| GGCTTCTCGTGTGGTTTGGT+TGG | 0.489674 | 5.3:+56560502 | None:intergenic |
| GTTGTCGGAGGTGGTCCTAC+GGG | 0.490066 | 5.3:-56557135 | MS.gene009833:CDS |
| TGGTGGTTCTCGGCACCGGT+TGG | 0.491874 | 5.3:-56560474 | MS.gene009833:CDS |
| CTTCCTTTGATGACCGACTC+AGG | 0.494060 | 5.3:-56556770 | MS.gene009833:CDS |
| TTCATATTCTGCTTATATCA+CGG | 0.494283 | 5.3:+56555116 | None:intergenic |
| GCGTGGCTTCTCGTGTGGTT+TGG | 0.494416 | 5.3:+56560498 | None:intergenic |
| AAAGGAAGACAATATCTCAT+TGG | 0.494833 | 5.3:+56556785 | None:intergenic |
| AACACCCGGTTCAACCGCTC+CGG | 0.500329 | 5.3:-56560545 | MS.gene009833:CDS |
| CAGTTGGTTTGTTTGGCGCT+CGG | 0.501757 | 5.3:-56555215 | MS.gene009833:CDS |
| CTGTTACACTGTGTGGTTGT+CGG | 0.506874 | 5.3:-56557150 | MS.gene009833:CDS |
| GCAAAAGGATTGTCTCTAGC+AGG | 0.508390 | 5.3:-56555244 | MS.gene009833:CDS |
| TCGTGAAGTTTACCATGCAC+AGG | 0.511255 | 5.3:-56557327 | MS.gene009833:CDS |
| AGTGGATTTGTTGAAAGTAC+CGG | 0.512050 | 5.3:-56556116 | MS.gene009833:CDS |
| GGTTGTCGGAGGTGGTCCTA+CGG | 0.516435 | 5.3:-56557136 | MS.gene009833:CDS |
| AGTGAGAGATGAAGGGTTGG+TGG | 0.519739 | 5.3:+56560591 | None:intergenic |
| ACCACGCGTGGCTTCTCGTG+TGG | 0.520725 | 5.3:+56560493 | None:intergenic |
| GGGTTTGAGAAGTTGTTTCG+TGG | 0.521730 | 5.3:+56560621 | None:intergenic |
| TCAGGAGTGCGACTTGTTCG+TGG | 0.523879 | 5.3:-56556612 | MS.gene009833:CDS |
| CAGTTTGTTTACAAGCACCT+TGG | 0.525860 | 5.3:-56555484 | MS.gene009833:CDS |
| CCTGCTATTTCCAAAGAACC+TGG | 0.527740 | 5.3:-56560295 | MS.gene009833:CDS |
| TTTCGGAAGAGGAGAAGAAA+AGG | 0.527798 | 5.3:-56557173 | MS.gene009833:CDS |
| TGGGCAAGAGCTGGAAGTGT+TGG | 0.530653 | 5.3:+56556089 | None:intergenic |
| AGCATGAAAGATATAGACTT+GGG | 0.533211 | 5.3:-56555511 | MS.gene009833:CDS |
| GCAGCCTTGTTAAACAAAGT+AGG | 0.539948 | 5.3:-56555559 | MS.gene009833:CDS |
| CTGTTGCTGAACCTGTTGCT+AGG | 0.543077 | 5.3:-56560324 | MS.gene009833:CDS |
| TTACAAGCACCTTGGAAGCA+TGG | 0.546075 | 5.3:-56555476 | MS.gene009833:CDS |
| CGAACCGGAGCGGTTGAACC+GGG | 0.549006 | 5.3:+56560541 | None:intergenic |
| CAGCATGAAAGATATAGACT+TGG | 0.550417 | 5.3:-56555512 | MS.gene009833:CDS |
| TGTATCCCCGCGTAATCACA+TGG | 0.555108 | 5.3:-56560398 | MS.gene009833:CDS |
| AACTCCATGAATTCCAAAAG+TGG | 0.557244 | 5.3:+56557370 | None:intergenic |
| CTTGGAAGCATGGCAACAGT+TGG | 0.557863 | 5.3:-56555466 | MS.gene009833:CDS |
| AGAGAAGAGTGAGAGATGAA+GGG | 0.558663 | 5.3:+56560584 | None:intergenic |
| GCCGGATGCAGGTTCATGAA+AGG | 0.560983 | 5.3:-56560451 | MS.gene009833:CDS |
| TCCATGAATTCCAAAAGTGG+TGG | 0.567774 | 5.3:+56557373 | None:intergenic |
| TTCACCTACTTTGTTTAACA+AGG | 0.568346 | 5.3:+56555555 | None:intergenic |
| AAATTACCTTGTTCTGTCTG+AGG | 0.572657 | 5.3:+56555422 | None:intergenic |
| AACTGAAGGAACACAGACAC+TGG | 0.572704 | 5.3:-56557453 | MS.gene009833:CDS |
| TATCTTTCATGCTGTCTGCA+CGG | 0.573160 | 5.3:+56555521 | None:intergenic |
| TCCCTAAATCTCCTGGTGGA+AGG | 0.576208 | 5.3:-56556470 | MS.gene009833:intron |
| TAGGAGATTGTAAACTTCCA+AGG | 0.576226 | 5.3:+56557428 | None:intergenic |
| GTGCCTGAGTCGGTCATCAA+AGG | 0.577551 | 5.3:+56556767 | None:intergenic |
| CGTCAGACATCATCAAATTG+AGG | 0.578854 | 5.3:+56557285 | None:intergenic |
| TGCGACGAATTTCCTGTGCA+TGG | 0.580363 | 5.3:+56557315 | None:intergenic |
| ACAGGATTGGTATTGATGAG+TGG | 0.585206 | 5.3:-56556184 | MS.gene009833:intron |
| ACACAAGTAGAAGCCAAAAG+AGG | 0.590268 | 5.3:+56560367 | None:intergenic |
| GGCAACAGTTGGAAGTTACA+AGG | 0.590642 | 5.3:-56555455 | MS.gene009833:CDS |
| GGTTGAACCGGGTGTTGAAG+TGG | 0.593883 | 5.3:+56560552 | None:intergenic |
| ATTTAGGGAGATCCAGTGAG+TGG | 0.595494 | 5.3:+56556484 | None:intergenic |
| AGTGAGTGGATAAAAGGTGA+TGG | 0.604545 | 5.3:+56556498 | None:intergenic |
| CCATGAATTCCAAAAGTGGT+GGG | 0.610117 | 5.3:+56557374 | None:intergenic |
| AGTAGACCTCAGACAGAACA+AGG | 0.610589 | 5.3:-56555428 | MS.gene009833:intron |
| ATGGTACTGAGGTTCCATAT+GGG | 0.618943 | 5.3:-56556548 | MS.gene009833:CDS |
| GAGAAGATATCTTGTACCGA+AGG | 0.620961 | 5.3:+56556152 | None:intergenic |
| GCTCACCTTTGTCAACTGGT+TGG | 0.622023 | 5.3:+56556737 | None:intergenic |
| ACACGAGAAGCCACGCGTGG+TGG | 0.626869 | 5.3:-56560491 | MS.gene009833:CDS |
| TGAAAACCATGTGATTACGC+GGG | 0.630073 | 5.3:+56560392 | None:intergenic |
| AACAAAGTAGGTGAAGCCAA+TGG | 0.630315 | 5.3:-56555547 | MS.gene009833:CDS |
| TCAGAGATATGCTCATGTGA+AGG | 0.636417 | 5.3:-56557064 | MS.gene009833:CDS |
| AACCGCTCCGGTTCGCTATG+CGG | 0.638944 | 5.3:-56560533 | MS.gene009833:CDS |
| CCACTAAATTCAACTCCCGT+AGG | 0.642737 | 5.3:+56557120 | None:intergenic |
| TTCTCAATAGGTGACTGCAG+TGG | 0.644093 | 5.3:-56556134 | MS.gene009833:CDS |
| CAATGTGAGACTGTAACTGA+AGG | 0.645608 | 5.3:-56557467 | MS.gene009833:CDS |
| GAGGTTTCTAAACAAAGACA+TGG | 0.647360 | 5.3:+56560663 | None:intergenic |
| GTGCCGAGAACCACCACGCG+TGG | 0.648454 | 5.3:+56560481 | None:intergenic |
| CCACAGGTAGCAGAGAGGCA+AGG | 0.650800 | 5.3:-56555592 | MS.gene009833:intron |
| TGTTCCTCCAGCTAATGACA+CGG | 0.653147 | 5.3:+56555182 | None:intergenic |
| GTGAAAACCATGTGATTACG+CGG | 0.655602 | 5.3:+56560391 | None:intergenic |
| TATACTTAACGATGGTACTG+AGG | 0.661927 | 5.3:-56556559 | MS.gene009833:CDS |
| ACCACACGAGAAGCCACGCG+TGG | 0.664281 | 5.3:-56560494 | MS.gene009833:CDS |
| TGCCACCAACCAGTTGACAA+AGG | 0.666218 | 5.3:-56556742 | MS.gene009833:intron |
| GTTCCTCCAGCTAATGACAC+GGG | 0.666835 | 5.3:+56555183 | None:intergenic |
| TATCAATCCTGATAAACATG+AGG | 0.672808 | 5.3:-56560242 | MS.gene009833:intron |
| AAAGTAGGTGAAGCCAATGG+AGG | 0.673473 | 5.3:-56555544 | MS.gene009833:CDS |
| AGCCGCATAGCGAACCGGAG+CGG | 0.675373 | 5.3:+56560531 | None:intergenic |
| GAAAACCATGTGATTACGCG+GGG | 0.676500 | 5.3:+56560393 | None:intergenic |
| TTACACTGTGTGGTTGTCGG+AGG | 0.678237 | 5.3:-56557147 | MS.gene009833:CDS |
| GAGTAAACAAACCTTCCACC+AGG | 0.679279 | 5.3:+56556459 | None:intergenic |
| AAGAAGATTATACTTAACGA+TGG | 0.679351 | 5.3:-56556567 | MS.gene009833:CDS |
| GAAAAGGCTGTTACACTGTG+TGG | 0.679820 | 5.3:-56557157 | MS.gene009833:CDS |
| TGGTGGCATAGTGCCTGAGT+CGG | 0.683066 | 5.3:+56556757 | None:intergenic |
| ATTCTATGTAGCTATTAACT+GGG | 0.685511 | 5.3:-56555158 | MS.gene009833:CDS |
| ATACCTCAATCAAAGTAACA+TGG | 0.690821 | 5.3:+56557034 | None:intergenic |
| GCATGAAAGATATAGACTTG+GGG | 0.694188 | 5.3:-56555510 | MS.gene009833:CDS |
| GATCTCCCTAAATCTCCTGG+TGG | 0.703535 | 5.3:-56556474 | MS.gene009833:CDS |
| TAACCCGTGTCATTAGCTGG+AGG | 0.720872 | 5.3:-56555186 | MS.gene009833:CDS |
| GAACTCCACAGGTAGCAGAG+AGG | 0.756524 | 5.3:-56555597 | MS.gene009833:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATTGTAATAATAAAA+TGG | - | chr5.3:56558846-56558865 | MS.gene009833:intron | 10.0% |
| !!! | TTTTATAATTGATATATTCA+GGG | + | chr5.3:56557033-56557052 | None:intergenic | 10.0% |
| !!! | TTTTTATAATTGATATATTC+AGG | + | chr5.3:56557034-56557053 | None:intergenic | 10.0% |
| !! | GTGTTAAAACATAATATATT+TGG | + | chr5.3:56559502-56559521 | None:intergenic | 15.0% |
| !! | TACAATTCTTATGAAAAATA+GGG | - | chr5.3:56558118-56558137 | MS.gene009833:intron | 15.0% |
| !! | TTACAATTCTTATGAAAAAT+AGG | - | chr5.3:56558117-56558136 | MS.gene009833:intron | 15.0% |
| !! | TTTCATATATAAATTGTAAC+CGG | - | chr5.3:56556952-56556971 | MS.gene009833:intron | 15.0% |
| !!! | TTGCTTTTAAAAACATAAAA+CGG | - | chr5.3:56560481-56560500 | MS.gene009833:CDS | 15.0% |
| !! | AACTTAATTAAGCACTTATA+AGG | + | chr5.3:56560126-56560145 | None:intergenic | 20.0% |
| !! | AAGATAAGTTCAAATTTAGT+CGG | + | chr5.3:56559900-56559919 | None:intergenic | 20.0% |
| !! | AATTAGCAATTAACTAATCA+AGG | - | chr5.3:56556052-56556071 | MS.gene009833:intron | 20.0% |
| !! | AGAAATTTCAACATAAGAAA+AGG | + | chr5.3:56559141-56559160 | None:intergenic | 20.0% |
| !! | ATATGAAATTGAATTTCCAT+TGG | + | chr5.3:56556940-56556959 | None:intergenic | 20.0% |
| !! | ATTAAGTTAATTATCCAAAC+AGG | - | chr5.3:56560138-56560157 | MS.gene009833:intron | 20.0% |
| !! | CATTAAAAGGTAACTTATTT+GGG | - | chr5.3:56556682-56556701 | MS.gene009833:intron | 20.0% |
| !! | TATGAAATTGAATTTCCATT+GGG | + | chr5.3:56556939-56556958 | None:intergenic | 20.0% |
| !! | TGAAAATTGAAACCATTAAA+AGG | - | chr5.3:56556669-56556688 | MS.gene009833:intron | 20.0% |
| !! | TGTTACAATGATTAATTTCA+AGG | + | chr5.3:56555877-56555896 | None:intergenic | 20.0% |
| !! | TTAAGTTAATTATCCAAACA+GGG | - | chr5.3:56560139-56560158 | MS.gene009833:intron | 20.0% |
| !! | TTTATCTCTTATGATAGAAA+TGG | - | chr5.3:56560067-56560086 | MS.gene009833:intron | 20.0% |
| !! | TTTCAATTTCATTGCTTATA+TGG | - | chr5.3:56555637-56555656 | MS.gene009833:intron | 20.0% |
| !!! | TTTCTTTTTGCATTTTTGTA+GGG | - | chr5.3:56556732-56556751 | MS.gene009833:intron | 20.0% |
| !!! | TTTTAGATATTTCATTGACT+AGG | - | chr5.3:56555689-56555708 | MS.gene009833:intron | 20.0% |
| !!! | TTTTCTTTTTGCATTTTTGT+AGG | - | chr5.3:56556731-56556750 | MS.gene009833:intron | 20.0% |
| !!! | TTTTTAAAAGCAACAACAAA+AGG | + | chr5.3:56560474-56560493 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTGTAATCCGT+GGG | + | chr5.3:56556245-56556264 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGTAATCCG+TGG | + | chr5.3:56556246-56556265 | None:intergenic | 20.0% |
| ! | AACTAAGTGGAATTTATTTG+AGG | - | chr5.3:56556644-56556663 | MS.gene009833:intron | 25.0% |
| ! | AAGAAGATTATACTTAACGA+TGG | - | chr5.3:56559211-56559230 | MS.gene009833:intron | 25.0% |
| ! | AATAAACTGAAAACAGCTTA+TGG | + | chr5.3:56559981-56560000 | None:intergenic | 25.0% |
| ! | AATTCTGATTCTTAGATATC+AGG | + | chr5.3:56556036-56556055 | None:intergenic | 25.0% |
| ! | ACATATTGAACAAACAGTAA+AGG | + | chr5.3:56559117-56559136 | None:intergenic | 25.0% |
| ! | ATACTTGGTTATTGTTGTAT+TGG | - | chr5.3:56556797-56556816 | MS.gene009833:intron | 25.0% |
| ! | ATGAAATTGAATTTCCATTG+GGG | + | chr5.3:56556938-56556957 | None:intergenic | 25.0% |
| ! | ATTAACAAAAGACACATTCT+AGG | + | chr5.3:56555813-56555832 | None:intergenic | 25.0% |
| ! | ATTAGTTAGGGTAGAATAAA+AGG | + | chr5.3:56556774-56556793 | None:intergenic | 25.0% |
| ! | ATTCTATGTAGCTATTAACT+GGG | - | chr5.3:56560620-56560639 | MS.gene009833:CDS | 25.0% |
| ! | ATTGTAACATTGTGAATTCT+TGG | - | chr5.3:56555888-56555907 | MS.gene009833:intron | 25.0% |
| ! | CATATTGAACAAACAGTAAA+GGG | + | chr5.3:56559116-56559135 | None:intergenic | 25.0% |
| ! | CCATTAAAAGGTAACTTATT+TGG | - | chr5.3:56556681-56556700 | MS.gene009833:intron | 25.0% |
| ! | CTAAATTTGAACTTATCTTC+CGG | - | chr5.3:56559901-56559920 | MS.gene009833:intron | 25.0% |
| ! | GATAAGTTAGTAATTGCATT+AGG | - | chr5.3:56558374-56558393 | MS.gene009833:intron | 25.0% |
| ! | GTATTGTATCTAAGCTTATT+TGG | - | chr5.3:56555582-56555601 | MS.gene009833:CDS | 25.0% |
| ! | TAACTGACTAAATTGTCATT+TGG | - | chr5.3:56555726-56555745 | MS.gene009833:intron | 25.0% |
| ! | TAGATATTATACACATGTTG+TGG | - | chr5.3:56558779-56558798 | MS.gene009833:intron | 25.0% |
| ! | TCAAGAAATGAAAGTTACTT+GGG | + | chr5.3:56559711-56559730 | None:intergenic | 25.0% |
| ! | TGCAATTACTAACTTATCAT+AGG | + | chr5.3:56558372-56558391 | None:intergenic | 25.0% |
| ! | TTAACAAAAGACACATTCTA+GGG | + | chr5.3:56555812-56555831 | None:intergenic | 25.0% |
| ! | TTACAAGTTTACCACAAAAT+TGG | + | chr5.3:56558899-56558918 | None:intergenic | 25.0% |
| ! | TTATATGGTTTAGTTATGGT+TGG | - | chr5.3:56555652-56555671 | MS.gene009833:intron | 25.0% |
| ! | TTCAAGAAATGAAAGTTACT+TGG | + | chr5.3:56559712-56559731 | None:intergenic | 25.0% |
| ! | TTCTTAATAAGAATGATGAG+TGG | - | chr5.3:56556360-56556379 | MS.gene009833:intron | 25.0% |
| ! | TTGCTTATATGGTTTAGTTA+TGG | - | chr5.3:56555648-56555667 | MS.gene009833:intron | 25.0% |
| ! | TTTGTAATCTGTAACTGATT+TGG | - | chr5.3:56558573-56558592 | MS.gene009833:intron | 25.0% |
| !! | AACTGACTAAATTGTCATTT+GGG | - | chr5.3:56555727-56555746 | MS.gene009833:intron | 25.0% |
| !! | CCAAATAAGTTACCTTTTAA+TGG | + | chr5.3:56556684-56556703 | None:intergenic | 25.0% |
| !! | TGATTTTTGTCTCAAACTTT+AGG | - | chr5.3:56556297-56556316 | MS.gene009833:intron | 25.0% |
| !!! | AAGCATTATTTTTCAAACAC+AGG | + | chr5.3:56558540-56558559 | None:intergenic | 25.0% |
| !!! | AATGTGTTACTTTCTTTACT+TGG | - | chr5.3:56559806-56559825 | MS.gene009833:intron | 25.0% |
| !!! | TTCTAGTCGATTTGTTAAAT+TGG | - | chr5.3:56557073-56557092 | MS.gene009833:CDS | 25.0% |
| !!! | TTGCATTTATTTTCTTTCCA+TGG | - | chr5.3:56559352-56559371 | MS.gene009833:intron | 25.0% |
| !!! | TTGGTTTTAGTTTAACACTA+GGG | - | chr5.3:56559751-56559770 | MS.gene009833:intron | 25.0% |
| !!! | TTTGGTTTTAGTTTAACACT+AGG | - | chr5.3:56559750-56559769 | MS.gene009833:intron | 25.0% |
| AAAGATACCTCATGTTTATC+AGG | + | chr5.3:56555546-56555565 | None:intergenic | 30.0% | |
| AAAGGAAGACAATATCTCAT+TGG | + | chr5.3:56558996-56559015 | None:intergenic | 30.0% | |
| AACCAAGTATCTCATTAGTT+AGG | + | chr5.3:56556787-56556806 | None:intergenic | 30.0% | |
| AACCCAAATGACTATTTACT+CGG | + | chr5.3:56556979-56556998 | None:intergenic | 30.0% | |
| AACCCAAATGACTATTTACT+TGG | + | chr5.3:56556979-56556998 | None:intergenic | 30.0% | |
| ACACAAGAATTGTTAGCAAT+TGG | + | chr5.3:56556153-56556172 | None:intergenic | 30.0% | |
| ACCAAATAAGCCTCAATAAA+AGG | + | chr5.3:56560396-56560415 | None:intergenic | 30.0% | |
| ACCAAGTATCTCATTAGTTA+GGG | + | chr5.3:56556786-56556805 | None:intergenic | 30.0% | |
| ACCCAAATGACTATTTACTT+GGG | + | chr5.3:56556978-56556997 | None:intergenic | 30.0% | |
| ACCGTTGCAAAATTTACAAT+TGG | - | chr5.3:56559378-56559397 | MS.gene009833:intron | 30.0% | |
| ACTAGAAAAAGACACATTTG+AGG | + | chr5.3:56557060-56557079 | None:intergenic | 30.0% | |
| ACTCTTATTAGTCACTCAAT+GGG | - | chr5.3:56557251-56557270 | MS.gene009833:intron | 30.0% | |
| AGAAAGTAACACATTCAGAA+TGG | + | chr5.3:56559801-56559820 | None:intergenic | 30.0% | |
| AGAACAGTGTTATAAAAACC+AGG | + | chr5.3:56558161-56558180 | None:intergenic | 30.0% | |
| AGCATGAAAGATATAGACTT+GGG | - | chr5.3:56560267-56560286 | MS.gene009833:CDS | 30.0% | |
| AGTTATGGTTGGAGAAAAAA+AGG | - | chr5.3:56555663-56555682 | MS.gene009833:intron | 30.0% | |
| ATACCTCAATCAAAGTAACA+TGG | + | chr5.3:56558747-56558766 | None:intergenic | 30.0% | |
| ATATCAACTTAGCGTCTATT+TGG | - | chr5.3:56559873-56559892 | MS.gene009833:intron | 30.0% | |
| ATCTGTATTATCATGAAAGC+AGG | - | chr5.3:56559436-56559455 | MS.gene009833:intron | 30.0% | |
| ATTCAGAATGGAATGTGTTT+AGG | + | chr5.3:56559789-56559808 | None:intergenic | 30.0% | |
| ATTGCTAACAATTCTTGTGT+TGG | - | chr5.3:56556153-56556172 | MS.gene009833:CDS | 30.0% | |
| CAATTTATTCATGTCTCTTC+AGG | - | chr5.3:56558970-56558989 | MS.gene009833:intron | 30.0% | |
| CTAGAAAAAGACACATTTGA+GGG | + | chr5.3:56557059-56557078 | None:intergenic | 30.0% | |
| CTTCGTTTAGTGTTCATTAT+TGG | - | chr5.3:56557568-56557587 | MS.gene009833:intron | 30.0% | |
| GATTCTATGTAGCTATTAAC+TGG | - | chr5.3:56560619-56560638 | MS.gene009833:CDS | 30.0% | |
| GGTTTGATTAATATGACTGA+TGG | - | chr5.3:56556995-56557014 | MS.gene009833:intron | 30.0% | |
| GTACAAGATATCTTCTCAAT+AGG | - | chr5.3:56559632-56559651 | MS.gene009833:intron | 30.0% | |
| GTAGAAAAGAAAGAGAATTC+TGG | - | chr5.3:56557697-56557716 | MS.gene009833:intron | 30.0% | |
| GTGATTCTTACTTTACAAGT+TGG | - | chr5.3:56555990-56556009 | MS.gene009833:intron | 30.0% | |
| GTGTTAAAGTGACTATGATA+TGG | - | chr5.3:56556407-56556426 | MS.gene009833:intron | 30.0% | |
| GTTATGGTTGGAGAAAAAAA+GGG | - | chr5.3:56555664-56555683 | MS.gene009833:intron | 30.0% | |
| GTTGATATGAATAAGCTTTC+AGG | + | chr5.3:56559861-56559880 | None:intergenic | 30.0% | |
| TAACATTGTGAATTCTTGGT+TGG | - | chr5.3:56555892-56555911 | MS.gene009833:intron | 30.0% | |
| TAAGCCTCAATAAAAGGTTA+AGG | + | chr5.3:56560390-56560409 | None:intergenic | 30.0% | |
| TAATAAGAATGATGAGTGGT+TGG | - | chr5.3:56556364-56556383 | MS.gene009833:intron | 30.0% | |
| TATCAATCCTGATAAACATG+AGG | - | chr5.3:56555536-56555555 | MS.gene009833:CDS | 30.0% | |
| TGTAACAGAATTCTGACTTT+GGG | - | chr5.3:56557843-56557862 | MS.gene009833:intron | 30.0% | |
| TGTTGAAATTTCTATCAGTC+AGG | - | chr5.3:56559148-56559167 | MS.gene009833:intron | 30.0% | |
| TTCAGAATGGAATGTGTTTA+GGG | + | chr5.3:56559788-56559807 | None:intergenic | 30.0% | |
| TTCTTTCTTGCTAATTGTAC+TGG | - | chr5.3:56555513-56555532 | MS.gene009833:CDS | 30.0% | |
| TTGCTAACAATTCTTGTGTT+GGG | - | chr5.3:56556154-56556173 | MS.gene009833:CDS | 30.0% | |
| TTGTAACAGAATTCTGACTT+TGG | - | chr5.3:56557842-56557861 | MS.gene009833:intron | 30.0% | |
| TTTCTGCTAAGAAAGAAGAT+GGG | - | chr5.3:56557917-56557936 | MS.gene009833:intron | 30.0% | |
| ! | AAGGTAACTTATTTGGGATT+TGG | - | chr5.3:56556688-56556707 | MS.gene009833:intron | 30.0% |
| ! | ACCTTTTATTGAGGCTTATT+TGG | - | chr5.3:56560392-56560411 | MS.gene009833:CDS | 30.0% |
| ! | CAATTTTGTTAGTCACTGTT+AGG | + | chr5.3:56557825-56557844 | None:intergenic | 30.0% |
| ! | CATTCCTTAACCTTTTATTG+AGG | - | chr5.3:56560383-56560402 | MS.gene009833:CDS | 30.0% |
| ! | GCCAATTGTAAATTTTGCAA+CGG | + | chr5.3:56559382-56559401 | None:intergenic | 30.0% |
| ! | TTCACCTACTTTGTTTAACA+AGG | + | chr5.3:56560226-56560245 | None:intergenic | 30.0% |
| ! | TTTACTAACTTTTCTCCTAC+AGG | - | chr5.3:56560509-56560528 | MS.gene009833:CDS | 30.0% |
| ! | TTTTCTGCTAAGAAAGAAGA+TGG | - | chr5.3:56557916-56557935 | MS.gene009833:intron | 30.0% |
| !! | AAAGGGTGTTATACTAGTAT+TGG | - | chr5.3:56558224-56558243 | MS.gene009833:intron | 30.0% |
| !! | CAAATGTGTCTTTTTCTAGT+CGG | - | chr5.3:56557060-56557079 | MS.gene009833:CDS | 30.0% |
| !! | TAGAATGTTCTGAAACTAAG+TGG | - | chr5.3:56556631-56556650 | MS.gene009833:intron | 30.0% |
| !! | TATCCATGTTACTTTGATTG+AGG | - | chr5.3:56558741-56558760 | MS.gene009833:intron | 30.0% |
| !! | TGAAGAAGTAACTTTTTGAG+AGG | + | chr5.3:56555137-56555156 | None:intergenic | 30.0% |
| !!! | TACTTTACAAGTTGGTTTTG+AGG | - | chr5.3:56555998-56556017 | MS.gene009833:intron | 30.0% |
| !!! | TTACTGTGACAGACATTTTT+TGG | + | chr5.3:56558939-56558958 | None:intergenic | 30.0% |
| AAATGACTATTTACTTGGGC+CGG | + | chr5.3:56556974-56556993 | None:intergenic | 35.0% | |
| AAATTACCTTGTTCTGTCTG+AGG | + | chr5.3:56560359-56560378 | None:intergenic | 35.0% | |
| AACATTGTGACTTCTTCGTT+GGG | - | chr5.3:56557151-56557170 | MS.gene009833:CDS | 35.0% | |
| AACGAAGAAGTCACAATGTT+AGG | + | chr5.3:56557151-56557170 | None:intergenic | 35.0% | |
| AACTCCATGAATTCCAAAAG+TGG | + | chr5.3:56558411-56558430 | None:intergenic | 35.0% | |
| AATATCCTAACTAAACTGCC+AGG | + | chr5.3:56557999-56558018 | None:intergenic | 35.0% | |
| AATCAGATTTGAGAGAGTCT+TGG | - | chr5.3:56557721-56557740 | MS.gene009833:intron | 35.0% | |
| ACCCAAATGACTATTTACTC+GGG | + | chr5.3:56557382-56557401 | None:intergenic | 35.0% | |
| ACCCTAACTAATGAGATACT+TGG | - | chr5.3:56556782-56556801 | MS.gene009833:CDS | 35.0% | |
| AGACTGTTTAGAAGAGCTTA+TGG | - | chr5.3:56559938-56559957 | MS.gene009833:intron | 35.0% | |
| AGAGCACAGTGGTATATTTA+TGG | - | chr5.3:56557766-56557785 | MS.gene009833:intron | 35.0% | |
| AGTATGTGTCTTTCGTTTGT+CGG | - | chr5.3:56555845-56555864 | MS.gene009833:intron | 35.0% | |
| AGTCTCACAAGTGTTTATAC+CGG | + | chr5.3:56559923-56559942 | None:intergenic | 35.0% | |
| ATGAATAAGCTTTCAGGCAA+AGG | + | chr5.3:56559855-56559874 | None:intergenic | 35.0% | |
| ATTGAACCTAAGACTTTGAG+AGG | + | chr5.3:56556126-56556145 | None:intergenic | 35.0% | |
| ATTGTGAATTCTTGGTTGGA+GGG | - | chr5.3:56555896-56555915 | MS.gene009833:intron | 35.0% | |
| CAAGAATTGTTAGCAATTGG+AGG | + | chr5.3:56556150-56556169 | None:intergenic | 35.0% | |
| CAGCATGAAAGATATAGACT+TGG | - | chr5.3:56560266-56560285 | MS.gene009833:CDS | 35.0% | |
| CGTGATATAAGCAGAATATG+AGG | - | chr5.3:56560663-56560682 | MS.gene009833:CDS | 35.0% | |
| CTGAGATGCATAGAAAGTAA+AGG | - | chr5.3:56557669-56557688 | MS.gene009833:intron | 35.0% | |
| CTTATTTGGACATGTCTATC+AGG | - | chr5.3:56555596-56555615 | MS.gene009833:intron | 35.0% | |
| GAAAAAAGAACCAGGTTCTT+TGG | + | chr5.3:56555496-56555515 | None:intergenic | 35.0% | |
| GAAACATATGCCAAAGTCAA+AGG | + | chr5.3:56556459-56556478 | None:intergenic | 35.0% | |
| GACTCTTATTAGTCACTCAA+TGG | - | chr5.3:56557250-56557269 | MS.gene009833:intron | 35.0% | |
| GATATATTCAGGGACTATAG+TGG | + | chr5.3:56557023-56557042 | None:intergenic | 35.0% | |
| GCAAGAAAGAAAAAAGAACC+AGG | + | chr5.3:56555504-56555523 | None:intergenic | 35.0% | |
| GCATGAAAGATATAGACTTG+GGG | - | chr5.3:56560268-56560287 | MS.gene009833:CDS | 35.0% | |
| GCCCAAGTAAATAGTCATTT+GGG | - | chr5.3:56556974-56556993 | MS.gene009833:intron | 35.0% | |
| GTTCAAGTGGCAATACATTA+AGG | + | chr5.3:56560165-56560184 | None:intergenic | 35.0% | |
| GTTTATTTCCATAATCCTCC+AGG | - | chr5.3:56559994-56560013 | MS.gene009833:intron | 35.0% | |
| TAACATTGTGACTTCTTCGT+TGG | - | chr5.3:56557150-56557169 | MS.gene009833:CDS | 35.0% | |
| TAGGAGATTGTAAACTTCCA+AGG | + | chr5.3:56558353-56558372 | None:intergenic | 35.0% | |
| TATACTTAACGATGGTACTG+AGG | - | chr5.3:56559219-56559238 | MS.gene009833:intron | 35.0% | |
| TGAATTGCTGACAATGACAA+CGG | + | chr5.3:56558832-56558851 | None:intergenic | 35.0% | |
| TGAGTGACTATTGTTCCAAA+AGG | + | chr5.3:56556845-56556864 | None:intergenic | 35.0% | |
| TGGAACAATAGTCACTCAAT+GGG | - | chr5.3:56556847-56556866 | MS.gene009833:intron | 35.0% | |
| TGTCAAAACTCTAAGCAACA+TGG | + | chr5.3:56557205-56557224 | None:intergenic | 35.0% | |
| TTAGACAGCAACGAACAAAA+GGG | - | chr5.3:56558207-56558226 | MS.gene009833:intron | 35.0% | |
| TTCTGCTAAGAAAGAAGATG+GGG | - | chr5.3:56557918-56557937 | MS.gene009833:intron | 35.0% | |
| TTGAATTCCTGACAATGTGT+AGG | - | chr5.3:56559727-56559746 | MS.gene009833:intron | 35.0% | |
| TTGGAACAATAGTCACTCAA+TGG | - | chr5.3:56556846-56556865 | MS.gene009833:intron | 35.0% | |
| TTTAGACAGCAACGAACAAA+AGG | - | chr5.3:56558206-56558225 | MS.gene009833:intron | 35.0% | |
| ! | AACCAGAACAAAGCTTTGTA+TGG | + | chr5.3:56556185-56556204 | None:intergenic | 35.0% |
| ! | ACTTTCAAAGCAGTTCCTTT+TGG | - | chr5.3:56556827-56556846 | MS.gene009833:intron | 35.0% |
| ! | AGAATTCTGACTTTGGGAAA+AGG | - | chr5.3:56557849-56557868 | MS.gene009833:intron | 35.0% |
| ! | AGTGTTTTCGTTTGTCAGTT+TGG | - | chr5.3:56557108-56557127 | MS.gene009833:CDS | 35.0% |
| ! | ATTGGCTTCTATGAACTCTA+AGG | + | chr5.3:56558881-56558900 | None:intergenic | 35.0% |
| ! | GAATTCTGACTTTGGGAAAA+GGG | - | chr5.3:56557850-56557869 | MS.gene009833:intron | 35.0% |
| ! | GTTCATAGAAGCCAATTTTG+TGG | - | chr5.3:56558885-56558904 | MS.gene009833:intron | 35.0% |
| ! | TTTGTCTCAAACTTTAGGAG+TGG | - | chr5.3:56556302-56556321 | MS.gene009833:intron | 35.0% |
| ! | TTTTGTTCGTTGCTGTCTAA+AGG | + | chr5.3:56558207-56558226 | None:intergenic | 35.0% |
| !! | AGTGGATTTGTTGAAAGTAC+CGG | - | chr5.3:56559662-56559681 | MS.gene009833:intron | 35.0% |
| !! | TCGATTTTCCTTACTTTTCC+TGG | - | chr5.3:56557978-56557997 | MS.gene009833:intron | 35.0% |
| !!! | AGTCTGACACATTGTTTTGA+AGG | - | chr5.3:56558286-56558305 | MS.gene009833:intron | 35.0% |
| !!! | GTTTTCTCAGTTGGTTTGTT+TGG | - | chr5.3:56560556-56560575 | MS.gene009833:CDS | 35.0% |
| !!! | TGGGCTACAACTTTTGTTTT+TGG | - | chr5.3:56560639-56560658 | MS.gene009833:CDS | 35.0% |
| AAACCAAGTCGTAGGCTATT+AGG | + | chr5.3:56557897-56557916 | None:intergenic | 40.0% | |
| AAATGACTATTTACTCGGGC+CGG | + | chr5.3:56557378-56557397 | None:intergenic | 40.0% | |
| AACAAAGTAGGTGAAGCCAA+TGG | - | chr5.3:56560231-56560250 | MS.gene009833:intron | 40.0% | |
| AACCAAACCTACACATTGTC+AGG | + | chr5.3:56559737-56559756 | None:intergenic | 40.0% | |
| AAGTTCTCTCTTCACAGGAT+TGG | - | chr5.3:56559581-56559600 | MS.gene009833:intron | 40.0% | |
| AATCCCACCGTTAACTAACA+GGG | + | chr5.3:56556219-56556238 | None:intergenic | 40.0% | |
| ACACAAGTAGAAGCCAAAAG+AGG | + | chr5.3:56555414-56555433 | None:intergenic | 40.0% | |
| ACTCAATGGGATAGTTGACA+TGG | - | chr5.3:56556860-56556879 | MS.gene009833:intron | 40.0% | |
| ACTCACAGTGCAGCTTAATT+TGG | - | chr5.3:56558260-56558279 | MS.gene009833:intron | 40.0% | |
| AGAGAAGAGTGAGAGATGAA+GGG | + | chr5.3:56555197-56555216 | None:intergenic | 40.0% | |
| AGATCCAGTGAGTGGATAAA+AGG | + | chr5.3:56559289-56559308 | None:intergenic | 40.0% | |
| AGCAGAAAAAACCAAGTCGT+AGG | + | chr5.3:56557905-56557924 | None:intergenic | 40.0% | |
| AGTGAGTGGATAAAAGGTGA+TGG | + | chr5.3:56559283-56559302 | None:intergenic | 40.0% | |
| ATATGTAAACCCCCAAGCAT+TGG | - | chr5.3:56556080-56556099 | MS.gene009833:intron | 40.0% | |
| ATGCAGGTTCATGAAAGGAT+TGG | - | chr5.3:56555332-56555351 | MS.gene009833:intron | 40.0% | |
| ATTCCTAATAGCCTACGACT+TGG | - | chr5.3:56557891-56557910 | MS.gene009833:intron | 40.0% | |
| CAATACATTAAGGCCCTGTT+TGG | + | chr5.3:56560155-56560174 | None:intergenic | 40.0% | |
| CAATGTGAGACTGTAACTGA+AGG | - | chr5.3:56558311-56558330 | MS.gene009833:intron | 40.0% | |
| CAGGAAAATTATCGCAAACC+TGG | + | chr5.3:56558521-56558540 | None:intergenic | 40.0% | |
| CATTGTGAATTCTTGGTTGG+AGG | - | chr5.3:56555895-56555914 | MS.gene009833:intron | 40.0% | |
| CCATGAATTCCAAAAGTGGT+GGG | + | chr5.3:56558407-56558426 | None:intergenic | 40.0% | |
| CCTCTGCAAACTATGTATTG+AGG | - | chr5.3:56556503-56556522 | MS.gene009833:CDS | 40.0% | |
| CGTCAGACATCATCAAATTG+AGG | + | chr5.3:56558496-56558515 | None:intergenic | 40.0% | |
| CTAAACTGCCAGGAAAAGTA+AGG | + | chr5.3:56557989-56558008 | None:intergenic | 40.0% | |
| CTCAATGGGATAGTTGACAT+GGG | - | chr5.3:56556861-56556880 | MS.gene009833:intron | 40.0% | |
| CTCACAGTGCAGCTTAATTT+GGG | - | chr5.3:56558261-56558280 | MS.gene009833:intron | 40.0% | |
| CTTCGTTGGGTGTTCATTAT+TGG | - | chr5.3:56557164-56557183 | MS.gene009833:CDS | 40.0% | |
| GAGAAGATATCTTGTACCGA+AGG | + | chr5.3:56559629-56559648 | None:intergenic | 40.0% | |
| GCCCGAGTAAATAGTCATTT+GGG | - | chr5.3:56557378-56557397 | MS.gene009833:CDS | 40.0% | |
| GGCCCAAGTAAATAGTCATT+TGG | - | chr5.3:56556973-56556992 | MS.gene009833:intron | 40.0% | |
| GTACAAAGTTCTCTCTTCAC+AGG | - | chr5.3:56559576-56559595 | MS.gene009833:intron | 40.0% | |
| GTGAAAACCATGTGATTACG+CGG | + | chr5.3:56555390-56555409 | None:intergenic | 40.0% | |
| TAAAGCTCACCTTTGTCAAC+TGG | + | chr5.3:56559048-56559067 | None:intergenic | 40.0% | |
| TAAGCTATCCTGGAGGATTA+TGG | + | chr5.3:56560005-56560024 | None:intergenic | 40.0% | |
| TAATCCCACCGTTAACTAAC+AGG | + | chr5.3:56556220-56556239 | None:intergenic | 40.0% | |
| TATCTTTCATGCTGTCTGCA+CGG | + | chr5.3:56560260-56560279 | None:intergenic | 40.0% | |
| TCAGAGATATGCTCATGTGA+AGG | - | chr5.3:56558714-56558733 | MS.gene009833:intron | 40.0% | |
| TCATGAAAGCAGGATCACAT+TGG | - | chr5.3:56559446-56559465 | MS.gene009833:intron | 40.0% | |
| TCCATGAATTCCAAAAGTGG+TGG | + | chr5.3:56558408-56558427 | None:intergenic | 40.0% | |
| TCTGCTTTCATAAGCTATCC+TGG | + | chr5.3:56560015-56560034 | None:intergenic | 40.0% | |
| TGAAAACCATGTGATTACGC+GGG | + | chr5.3:56555389-56555408 | None:intergenic | 40.0% | |
| TGCTCTTATGCAACTCAGAA+TGG | + | chr5.3:56557752-56557771 | None:intergenic | 40.0% | |
| TGGAGAAAAGCTTAAACTGC+AGG | - | chr5.3:56555926-56555945 | MS.gene009833:intron | 40.0% | |
| TTCCTGACAATGTGTAGGTT+TGG | - | chr5.3:56559732-56559751 | MS.gene009833:intron | 40.0% | |
| TTTCGGAAGAGGAGAAGAAA+AGG | - | chr5.3:56558605-56558624 | MS.gene009833:intron | 40.0% | |
| TTTCTCCTACAGGATGCAAA+AGG | - | chr5.3:56560519-56560538 | MS.gene009833:CDS | 40.0% | |
| ! | AATTTTGCAACGGTTGTCCA+TGG | + | chr5.3:56559372-56559391 | None:intergenic | 40.0% |
| ! | ACAATCCTTTTGCATCCTGT+AGG | + | chr5.3:56560527-56560546 | None:intergenic | 40.0% |
| ! | ATCACCTTTTATCCACTCAC+TGG | - | chr5.3:56559282-56559301 | MS.gene009833:intron | 40.0% |
| ! | ATGGTACTGAGGTTCCATAT+GGG | - | chr5.3:56559230-56559249 | MS.gene009833:intron | 40.0% |
| ! | CAGTTTGTTTACAAGCACCT+TGG | - | chr5.3:56560294-56560313 | MS.gene009833:CDS | 40.0% |
| ! | CATGGTTTTCACACCTCTTT+TGG | - | chr5.3:56555398-56555417 | MS.gene009833:intron | 40.0% |
| ! | CCTCAATACATAGTTTGCAG+AGG | + | chr5.3:56556506-56556525 | None:intergenic | 40.0% |
| ! | CTTTTCCTGGCAGTTTAGTT+AGG | - | chr5.3:56557991-56558010 | MS.gene009833:intron | 40.0% |
| ! | TGAGTTACGACCTTTGACTT+TGG | - | chr5.3:56556446-56556465 | MS.gene009833:intron | 40.0% |
| ! | TGATTTGGATGCAGGGATTT+CGG | - | chr5.3:56558588-56558607 | MS.gene009833:intron | 40.0% |
| ! | TGTGCTGCAAAATGCGTTTT+TGG | - | chr5.3:56556569-56556588 | MS.gene009833:CDS | 40.0% |
| ! | TTCCATATGGGTTGTTGGTT+TGG | - | chr5.3:56559242-56559261 | MS.gene009833:intron | 40.0% |
| !! | ACAGGATTGGTATTGATGAG+TGG | - | chr5.3:56559594-56559613 | MS.gene009833:intron | 40.0% |
| !! | CTGTAACTGATTTGGATGCA+GGG | - | chr5.3:56558581-56558600 | MS.gene009833:intron | 40.0% |
| !! | GACCATACAAAGCTTTGTTC+TGG | - | chr5.3:56556180-56556199 | MS.gene009833:CDS | 40.0% |
| !! | GCAGCCTTGTTAAACAAAGT+AGG | - | chr5.3:56560219-56560238 | MS.gene009833:intron | 40.0% |
| !! | TCTGTAACTGATTTGGATGC+AGG | - | chr5.3:56558580-56558599 | MS.gene009833:intron | 40.0% |
| !!! | CTTTTGGCTTCTACTTGTGT+TGG | - | chr5.3:56555414-56555433 | MS.gene009833:intron | 40.0% |
| AAAGTAGGTGAAGCCAATGG+AGG | - | chr5.3:56560234-56560253 | MS.gene009833:intron | 45.0% | |
| AAAGTTACTTGGGCAAGAGC+TGG | + | chr5.3:56559701-56559720 | None:intergenic | 45.0% | |
| AACCTTCCACCAGGAGATTT+AGG | + | chr5.3:56559313-56559332 | None:intergenic | 45.0% | |
| AACTGAAGGAACACAGACAC+TGG | - | chr5.3:56558325-56558344 | MS.gene009833:intron | 45.0% | |
| AAGAGTGAGAGATGAAGGGT+TGG | + | chr5.3:56555193-56555212 | None:intergenic | 45.0% | |
| ACATCACCAGACCAATGCTT+GGG | + | chr5.3:56556094-56556113 | None:intergenic | 45.0% | |
| ACCTTCCACCAGGAGATTTA+GGG | + | chr5.3:56559312-56559331 | None:intergenic | 45.0% | |
| AGTAGACCTCAGACAGAACA+AGG | - | chr5.3:56560350-56560369 | MS.gene009833:CDS | 45.0% | |
| ATCCCACCGTTAACTAACAG+GGG | + | chr5.3:56556218-56556237 | None:intergenic | 45.0% | |
| ATCGCTCCTCTCAAAGTCTT+AGG | - | chr5.3:56556117-56556136 | MS.gene009833:CDS | 45.0% | |
| ATTTAGGGAGATCCAGTGAG+TGG | + | chr5.3:56559297-56559316 | None:intergenic | 45.0% | |
| CATTGTATCCCAGGAGAAAG+GGG | - | chr5.3:56560423-56560442 | MS.gene009833:CDS | 45.0% | |
| CCACTAAATTCAACTCCCGT+AGG | + | chr5.3:56558661-56558680 | None:intergenic | 45.0% | |
| CCTACGGGAGTTGAATTTAG+TGG | - | chr5.3:56558658-56558677 | MS.gene009833:intron | 45.0% | |
| CTGTTACACTGTGTGGTTGT+CGG | - | chr5.3:56558628-56558647 | MS.gene009833:intron | 45.0% | |
| GAAAACCATGTGATTACGCG+GGG | + | chr5.3:56555388-56555407 | None:intergenic | 45.0% | |
| GAAAAGGCTGTTACACTGTG+TGG | - | chr5.3:56558621-56558640 | MS.gene009833:intron | 45.0% | |
| GACCAAACCAACAACCCATA+TGG | + | chr5.3:56559247-56559266 | None:intergenic | 45.0% | |
| GAGAGAAGAGTGAGAGATGA+AGG | + | chr5.3:56555198-56555217 | None:intergenic | 45.0% | |
| GAGTAAACAAACCTTCCACC+AGG | + | chr5.3:56559322-56559341 | None:intergenic | 45.0% | |
| GCAAAAGGATTGTCTCTAGC+AGG | - | chr5.3:56560534-56560553 | MS.gene009833:CDS | 45.0% | |
| GCAACAACAAAAGGACCTCT+AGG | + | chr5.3:56560465-56560484 | None:intergenic | 45.0% | |
| GCACAACAGTACTACAGCTA+TGG | + | chr5.3:56558058-56558077 | None:intergenic | 45.0% | |
| GCATTGTATCCCAGGAGAAA+GGG | - | chr5.3:56560422-56560441 | MS.gene009833:CDS | 45.0% | |
| GCTTTCATAAGCTATCCTGG+AGG | + | chr5.3:56560012-56560031 | None:intergenic | 45.0% | |
| GGCAACAGTTGGAAGTTACA+AGG | - | chr5.3:56560323-56560342 | MS.gene009833:CDS | 45.0% | |
| GGCCCGAGTAAATAGTCATT+TGG | - | chr5.3:56557377-56557396 | MS.gene009833:CDS | 45.0% | |
| GTGAAACATCGTAACTCTCC+TGG | - | chr5.3:56558140-56558159 | MS.gene009833:intron | 45.0% | |
| GTTATGCAACAAGCCAAACC+AGG | - | chr5.3:56557940-56557959 | MS.gene009833:intron | 45.0% | |
| TACATCACCAGACCAATGCT+TGG | + | chr5.3:56556095-56556114 | None:intergenic | 45.0% | |
| TCCTTTCATGAACCTGCATC+CGG | + | chr5.3:56555331-56555350 | None:intergenic | 45.0% | |
| TCGTGAAGTTTACCATGCAC+AGG | - | chr5.3:56558451-56558470 | MS.gene009833:intron | 45.0% | |
| TGTTCCTCCAGCTAATGACA+CGG | + | chr5.3:56560599-56560618 | None:intergenic | 45.0% | |
| TTACAAGCACCTTGGAAGCA+TGG | - | chr5.3:56560302-56560321 | MS.gene009833:CDS | 45.0% | |
| TTCTCAATAGGTGACTGCAG+TGG | - | chr5.3:56559644-56559663 | MS.gene009833:intron | 45.0% | |
| TTGACCCCCCTGTTAGTTAA+CGG | - | chr5.3:56556209-56556228 | MS.gene009833:intron | 45.0% | |
| ! | ATCTAACCCGTGTCATTAGC+TGG | - | chr5.3:56560589-56560608 | MS.gene009833:CDS | 45.0% |
| ! | CCAGGTTCTTTGGAAATAGC+AGG | + | chr5.3:56555486-56555505 | None:intergenic | 45.0% |
| ! | CTCTAGCAGGTTTTCTCAGT+TGG | - | chr5.3:56560547-56560566 | MS.gene009833:CDS | 45.0% |
| ! | GATGGTACTGAGGTTCCATA+TGG | - | chr5.3:56559229-56559248 | MS.gene009833:intron | 45.0% |
| ! | GGGTTTGAGAAGTTGTTTCG+TGG | + | chr5.3:56555160-56555179 | None:intergenic | 45.0% |
| ! | GTGTCTTTCGTTTGTCGGTT+TGG | - | chr5.3:56555850-56555869 | MS.gene009833:intron | 45.0% |
| ! | GTTTTCACGCATTGTATCCC+AGG | - | chr5.3:56560414-56560433 | MS.gene009833:CDS | 45.0% |
| ! | TATTGCCACTTGAACTCCAC+AGG | - | chr5.3:56560170-56560189 | MS.gene009833:intron | 45.0% |
| ! | TGAGGTTCCATATGGGTTGT+TGG | - | chr5.3:56559237-56559256 | MS.gene009833:intron | 45.0% |
| ! | TGAGTTGCATAAGAGCACAG+TGG | - | chr5.3:56557755-56557774 | MS.gene009833:intron | 45.0% |
| !! | AAGCATTGGTCTGGTGATGT+AGG | - | chr5.3:56556094-56556113 | MS.gene009833:CDS | 45.0% |
| !! | CCTGCTATTTCCAAAGAACC+TGG | - | chr5.3:56555483-56555502 | MS.gene009833:CDS | 45.0% |
| !! | TTGATGATGTCTGACGTTCC+AGG | - | chr5.3:56558500-56558519 | MS.gene009833:intron | 45.0% |
| !! | TTGGTTTGGTCTACTGGTGT+TGG | - | chr5.3:56559256-56559275 | MS.gene009833:intron | 45.0% |
| !!! | AGCTGGAAGTGTTGGTTTTC+CGG | + | chr5.3:56559684-56559703 | None:intergenic | 45.0% |
| !!! | CCCACCACTTTTGGAATTCA+TGG | - | chr5.3:56558404-56558423 | MS.gene009833:intron | 45.0% |
| !! | GATAAAAAAATATATATATT+TGG | + | chr5.3:56559473-56559492 | None:intergenic | 5.0% |
| AGTGAGAGATGAAGGGTTGG+TGG | + | chr5.3:56555190-56555209 | None:intergenic | 50.0% | |
| ATCACCAGACCAATGCTTGG+GGG | + | chr5.3:56556092-56556111 | None:intergenic | 50.0% | |
| ATGCAACAAGCCAAACCAGG+AGG | - | chr5.3:56557943-56557962 | MS.gene009833:intron | 50.0% | |
| CAACTGTTGCCATGCTTCCA+AGG | + | chr5.3:56560314-56560333 | None:intergenic | 50.0% | |
| CACCTTTGTCAACTGGTTGG+TGG | + | chr5.3:56559041-56559060 | None:intergenic | 50.0% | |
| CATCACCAGACCAATGCTTG+GGG | + | chr5.3:56556093-56556112 | None:intergenic | 50.0% | |
| CGAAAGTTCAACACTCCTCC+TGG | + | chr5.3:56557961-56557980 | None:intergenic | 50.0% | |
| CGCATTGTATCCCAGGAGAA+AGG | - | chr5.3:56560421-56560440 | MS.gene009833:CDS | 50.0% | |
| CTGGATCTCCCTAAATCTCC+TGG | - | chr5.3:56559301-56559320 | MS.gene009833:intron | 50.0% | |
| CTGTTGCTGAACCTGTTGCT+AGG | - | chr5.3:56555454-56555473 | MS.gene009833:CDS | 50.0% | |
| CTTCCAACAGTTCCTGACAC+TGG | - | chr5.3:56556909-56556928 | MS.gene009833:intron | 50.0% | |
| CTTCCAGTGTCAGGAACTGT+TGG | + | chr5.3:56556915-56556934 | None:intergenic | 50.0% | |
| CTTGGTTGGAGGGTCATTGT+TGG | - | chr5.3:56555906-56555925 | MS.gene009833:intron | 50.0% | |
| GAACACAGACACTGGATCCT+TGG | - | chr5.3:56558333-56558352 | MS.gene009833:intron | 50.0% | |
| GATCTCCCTAAATCTCCTGG+TGG | - | chr5.3:56559304-56559323 | MS.gene009833:intron | 50.0% | |
| GCTCACCTTTGTCAACTGGT+TGG | + | chr5.3:56559044-56559063 | None:intergenic | 50.0% | |
| GTTCAACACTCCTCCTGGTT+TGG | + | chr5.3:56557956-56557975 | None:intergenic | 50.0% | |
| GTTCCTCCAGCTAATGACAC+GGG | + | chr5.3:56560598-56560617 | None:intergenic | 50.0% | |
| TCCCACCGTTAACTAACAGG+GGG | + | chr5.3:56556217-56556236 | None:intergenic | 50.0% | |
| TCCCTAAATCTCCTGGTGGA+AGG | - | chr5.3:56559308-56559327 | MS.gene009833:intron | 50.0% | |
| TGAGTGGCTTCGTGTTCCTT+CGG | - | chr5.3:56559610-56559629 | MS.gene009833:intron | 50.0% | |
| TGCCACCAACCAGTTGACAA+AGG | - | chr5.3:56559036-56559055 | MS.gene009833:intron | 50.0% | |
| TGCGACGAATTTCCTGTGCA+TGG | + | chr5.3:56558466-56558485 | None:intergenic | 50.0% | |
| TGCTACCTGTGGAGTTCAAG+TGG | + | chr5.3:56560178-56560197 | None:intergenic | 50.0% | |
| TGTATCCCCGCGTAATCACA+TGG | - | chr5.3:56555380-56555399 | MS.gene009833:intron | 50.0% | |
| TTACACTGTGTGGTTGTCGG+AGG | - | chr5.3:56558631-56558650 | MS.gene009833:intron | 50.0% | |
| ! | CTTCCTTTGATGACCGACTC+AGG | - | chr5.3:56559008-56559027 | MS.gene009833:intron | 50.0% |
| ! | CTTGGAAGCATGGCAACAGT+TGG | - | chr5.3:56560312-56560331 | MS.gene009833:CDS | 50.0% |
| ! | GCAGGTTGAATCCTAGCAAC+AGG | + | chr5.3:56555468-56555487 | None:intergenic | 50.0% |
| ! | TAACCCGTGTCATTAGCTGG+AGG | - | chr5.3:56560592-56560611 | MS.gene009833:CDS | 50.0% |
| !! | AGATGAAGGGTTGGTGGTGT+TGG | + | chr5.3:56555184-56555203 | None:intergenic | 50.0% |
| !! | ATGAAGGGTTGGTGGTGTTG+GGG | + | chr5.3:56555182-56555201 | None:intergenic | 50.0% |
| !! | CAGTTGGTTTGTTTGGCGCT+CGG | - | chr5.3:56560563-56560582 | MS.gene009833:CDS | 50.0% |
| !! | GATGAAGGGTTGGTGGTGTT+GGG | + | chr5.3:56555183-56555202 | None:intergenic | 50.0% |
| !! | GGGTTGTTGGTTTGGTCTAC+TGG | - | chr5.3:56559250-56559269 | MS.gene009833:intron | 50.0% |
| !! | TAAACCCCCAAGCATTGGTC+TGG | - | chr5.3:56556085-56556104 | MS.gene009833:intron | 50.0% |
| !! | TAACGGTGGGATTAGTCCCA+CGG | - | chr5.3:56556226-56556245 | MS.gene009833:intron | 50.0% |
| ACCCCCCTGTTAGTTAACGG+TGG | - | chr5.3:56556212-56556231 | MS.gene009833:intron | 55.0% | |
| AGATGTGGCCCCTTTCTCCT+GGG | + | chr5.3:56560434-56560453 | None:intergenic | 55.0% | |
| AGGAGAAAGGGGCCACATCT+GGG | - | chr5.3:56560434-56560453 | MS.gene009833:CDS | 55.0% | |
| CCCACCGTTAACTAACAGGG+GGG | + | chr5.3:56556216-56556235 | None:intergenic | 55.0% | |
| CCCCCCTGTTAGTTAACGGT+GGG | - | chr5.3:56556213-56556232 | MS.gene009833:intron | 55.0% | |
| CGCTTCTCCACTTCAACACC+CGG | - | chr5.3:56555219-56555238 | MS.gene009833:CDS | 55.0% | |
| GAACTCCACAGGTAGCAGAG+AGG | - | chr5.3:56560181-56560200 | MS.gene009833:intron | 55.0% | |
| GCCGGATGCAGGTTCATGAA+AGG | - | chr5.3:56555327-56555346 | MS.gene009833:intron | 55.0% | |
| GGATGCAGGGATTTCGGAAG+AGG | - | chr5.3:56558594-56558613 | MS.gene009833:intron | 55.0% | |
| GTGCCTGAGTCGGTCATCAA+AGG | + | chr5.3:56559014-56559033 | None:intergenic | 55.0% | |
| TGGTGGCATAGTGCCTGAGT+CGG | + | chr5.3:56559024-56559043 | None:intergenic | 55.0% | |
| ! | GGAGCACAACCCACCACTTT+TGG | - | chr5.3:56558395-56558414 | MS.gene009833:intron | 55.0% |
| ! | TCAGGAGTGCGACTTGTTCG+TGG | - | chr5.3:56559166-56559185 | MS.gene009833:intron | 55.0% |
| ! | TGGGCAAGAGCTGGAAGTGT+TGG | + | chr5.3:56559692-56559711 | None:intergenic | 55.0% |
| !! | GGCTTCTCGTGTGGTTTGGT+TGG | + | chr5.3:56555279-56555298 | None:intergenic | 55.0% |
| !! | GGTTGAACCGGGTGTTGAAG+TGG | + | chr5.3:56555229-56555248 | None:intergenic | 55.0% |
| !! | TGAAGGGTTGGTGGTGTTGG+GGG | + | chr5.3:56555181-56555200 | None:intergenic | 55.0% |
| AACACCCGGTTCAACCGCTC+CGG | - | chr5.3:56555233-56555252 | MS.gene009833:CDS | 60.0% | |
| AAGCCACGCGTGGTGGTTCT+CGG | - | chr5.3:56555294-56555313 | MS.gene009833:intron | 60.0% | |
| CACATCTGGGCTCGACCTAG+AGG | - | chr5.3:56560447-56560466 | MS.gene009833:CDS | 60.0% | |
| CACTGTGTGGTTGTCGGAGG+TGG | - | chr5.3:56558634-56558653 | MS.gene009833:intron | 60.0% | |
| CAGATGTGGCCCCTTTCTCC+TGG | + | chr5.3:56560435-56560454 | None:intergenic | 60.0% | |
| CAGGAGAAAGGGGCCACATC+TGG | - | chr5.3:56560433-56560452 | MS.gene009833:CDS | 60.0% | |
| CCACAGGTAGCAGAGAGGCA+AGG | - | chr5.3:56560186-56560205 | MS.gene009833:intron | 60.0% | |
| CCATTGGGGCTTCCAGTGTC+AGG | + | chr5.3:56556924-56556943 | None:intergenic | 60.0% | |
| CCTGACACTGGAAGCCCCAA+TGG | - | chr5.3:56556921-56556940 | MS.gene009833:intron | 60.0% | |
| CCTTGCCTCTCTGCTACCTG+TGG | + | chr5.3:56560189-56560208 | None:intergenic | 60.0% | |
| CTCTAGGTCGAGCCCAGATG+TGG | + | chr5.3:56560449-56560468 | None:intergenic | 60.0% | |
| GCGTGGCTTCTCGTGTGGTT+TGG | + | chr5.3:56555283-56555302 | None:intergenic | 60.0% | |
| GGTTGTCGGAGGTGGTCCTA+CGG | - | chr5.3:56558642-56558661 | MS.gene009833:intron | 60.0% | |
| GTTGTCGGAGGTGGTCCTAC+GGG | - | chr5.3:56558643-56558662 | MS.gene009833:intron | 60.0% | |
| ! | AACCGCTCCGGTTCGCTATG+CGG | - | chr5.3:56555245-56555264 | MS.gene009833:CDS | 60.0% |
| !! | GAAGGGTTGGTGGTGTTGGG+GGG | + | chr5.3:56555180-56555199 | None:intergenic | 60.0% |
| ACACGAGAAGCCACGCGTGG+TGG | - | chr5.3:56555287-56555306 | MS.gene009833:intron | 65.0% | |
| ACCACACGAGAAGCCACGCG+TGG | - | chr5.3:56555284-56555303 | MS.gene009833:intron | 65.0% | |
| ACCACGCGTGGCTTCTCGTG+TGG | + | chr5.3:56555288-56555307 | None:intergenic | 65.0% | |
| AGCCGCATAGCGAACCGGAG+CGG | + | chr5.3:56555250-56555269 | None:intergenic | 65.0% | |
| CCGAGAGCCGCATAGCGAAC+CGG | + | chr5.3:56555255-56555274 | None:intergenic | 65.0% | |
| CGAACCGGAGCGGTTGAACC+GGG | + | chr5.3:56555240-56555259 | None:intergenic | 65.0% | |
| GAACCTGCATCCGGCCCAAC+CGG | + | chr5.3:56555322-56555341 | None:intergenic | 65.0% | |
| GCGAACCGGAGCGGTTGAAC+CGG | + | chr5.3:56555241-56555260 | None:intergenic | 65.0% | |
| GCTGTCTGCACGGCCTCCAT+TGG | + | chr5.3:56560250-56560269 | None:intergenic | 65.0% | |
| ! | CCGGTTCGCTATGCGGCTCT+CGG | - | chr5.3:56555252-56555271 | MS.gene009833:intron | 65.0% |
| !! | GGTGGTTCTCGGCACCGGTT+GGG | - | chr5.3:56555305-56555324 | MS.gene009833:intron | 65.0% |
| !! | TGGTGGTTCTCGGCACCGGT+TGG | - | chr5.3:56555304-56555323 | MS.gene009833:intron | 65.0% |
| CGCGTGGTGGTTCTCGGCAC+CGG | - | chr5.3:56555300-56555319 | MS.gene009833:intron | 70.0% | |
| GTGCCGAGAACCACCACGCG+TGG | + | chr5.3:56555300-56555319 | None:intergenic | 70.0% | |
| !! | GTTCTCGGCACCGGTTGGGC+CGG | - | chr5.3:56555309-56555328 | MS.gene009833:intron | 70.0% |
| !! | GCACCGGTTGGGCCGGATGC+AGG | - | chr5.3:56555316-56555335 | MS.gene009833:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 56555117 | 56560683 | 56555117 | ID=MS.gene009833 |
| chr5.3 | mRNA | 56555117 | 56560683 | 56555117 | ID=MS.gene009833.t1;Parent=MS.gene009833 |
| chr5.3 | exon | 56560243 | 56560683 | 56560243 | ID=MS.gene009833.t1.exon1;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56560243 | 56560683 | 56560243 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56557279 | 56557492 | 56557279 | ID=MS.gene009833.t1.exon2;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56557279 | 56557492 | 56557279 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56557038 | 56557198 | 56557038 | ID=MS.gene009833.t1.exon3;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56557038 | 56557198 | 56557038 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56556743 | 56556808 | 56556743 | ID=MS.gene009833.t1.exon4;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56556743 | 56556808 | 56556743 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56556471 | 56556634 | 56556471 | ID=MS.gene009833.t1.exon5;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56556471 | 56556634 | 56556471 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56556088 | 56556202 | 56556088 | ID=MS.gene009833.t1.exon6;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56556088 | 56556202 | 56556088 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56555429 | 56555608 | 56555429 | ID=MS.gene009833.t1.exon7;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56555429 | 56555608 | 56555429 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| chr5.3 | exon | 56555117 | 56555269 | 56555117 | ID=MS.gene009833.t1.exon8;Parent=MS.gene009833.t1 |
| chr5.3 | CDS | 56555117 | 56555269 | 56555117 | ID=cds.MS.gene009833.t1;Parent=MS.gene009833.t1 |
| Gene Sequence |
| Protein sequence |
