AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047888

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047888.t1 MTR_3g088150 96.939 490 14 1 1 489 1 490 0.0 978
MS.gene047888.t1 MTR_1g029840 78.351 485 105 0 5 489 4 488 0.0 811
MS.gene047888.t1 MTR_1g029840 77.755 481 107 0 9 489 8 488 0.0 800
MS.gene047888.t1 MTR_8g094600 66.804 485 161 0 5 489 57 541 0.0 705
MS.gene047888.t1 MTR_8g076480 47.335 469 247 0 14 482 6 474 5.84e-165 475
MS.gene047888.t1 MTR_2g097950 46.764 479 252 1 12 487 15 493 5.48e-159 461
MS.gene047888.t1 MTR_4g065040 50.881 454 220 1 21 471 9 462 8.40e-146 427
MS.gene047888.t1 MTR_2g097950 44.328 476 233 2 12 487 15 458 1.20e-143 420
MS.gene047888.t1 MTR_1222s0010 36.387 382 231 5 18 395 6 379 6.58e-78 258
MS.gene047888.t1 MTR_1314s0010 35.799 338 207 4 117 446 1 336 6.37e-71 229
MS.gene047888.t1 MTR_3g078550 29.954 434 285 9 26 446 28 455 4.32e-40 150
MS.gene047888.t1 MTR_3g078550 29.954 434 285 9 26 446 58 485 8.66e-40 150
MS.gene047888.t1 MTR_4g106510 29.017 417 282 9 39 446 74 485 3.07e-39 149
MS.gene047888.t1 MTR_2g034160 24.777 448 307 8 35 466 106 539 5.22e-39 149
MS.gene047888.t1 MTR_3g078490 29.263 434 288 10 26 446 88 515 1.13e-37 145
MS.gene047888.t1 MTR_2g067660 27.874 348 242 8 113 454 178 522 7.27e-33 131
MS.gene047888.t1 MTR_8g064170 26.773 437 302 11 21 447 104 532 5.61e-30 123
MS.gene047888.t1 MTR_4g107040 26.770 452 299 13 13 447 99 535 6.73e-29 120
MS.gene047888.t1 MTR_8g083530 28.070 342 230 9 116 447 159 494 2.30e-27 115
MS.gene047888.t1 MTR_3g078170 27.212 452 297 14 13 447 97 533 4.10e-27 114
MS.gene047888.t1 MTR_4g131180 26.244 442 301 11 22 447 53 485 3.26e-26 111
MS.gene047888.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047888.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047888.t1 MTR_6g086340 27.515 338 235 8 116 446 156 490 8.09e-24 104
MS.gene047888.t1 MTR_1g014320 25.328 458 315 12 6 447 39 485 9.41e-24 104
MS.gene047888.t1 MTR_4g131180 26.119 402 273 10 22 407 53 446 7.77e-23 101
MS.gene047888.t1 MTR_8g064170 24.773 440 287 13 15 447 98 500 8.36e-22 98.6
MS.gene047888.t1 MTR_3g078490 29.310 290 196 6 26 308 58 345 4.82e-19 89.0
MS.gene047888.t1 MTR_2g009750 28.710 310 195 11 114 407 147 446 2.08e-18 88.2
MS.gene047888.t1 MTR_2g009750 28.710 310 195 11 114 407 146 445 2.62e-18 88.2
MS.gene047888.t1 MTR_2g009750 28.710 310 196 11 114 407 147 447 3.01e-18 87.8
MS.gene047888.t1 MTR_4g093170 27.036 307 205 8 114 407 174 474 3.43e-18 87.8
MS.gene047888.t1 MTR_3g078170 27.049 366 237 13 13 361 97 449 6.85e-18 86.3
MS.gene047888.t1 MTR_8g083520 26.163 344 201 10 116 447 150 452 3.40e-17 84.3
MS.gene047888.t1 MTR_8g083520 26.163 344 201 10 116 447 70 372 3.84e-17 83.6
MS.gene047888.t1 MTR_4g020710 48.684 76 39 0 294 369 8 83 6.14e-17 77.8
MS.gene047888.t1 MTR_4g020720 39.200 125 67 4 184 302 116 237 3.07e-16 79.3
MS.gene047888.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.55e-14 75.9
MS.gene047888.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.75e-14 75.9
MS.gene047888.t1 MTR_8g083530 35.762 151 88 5 116 260 159 306 1.91e-13 72.0
MS.gene047888.t1 MTR_1399s0020 27.830 212 143 5 253 462 145 348 3.19e-13 71.2
MS.gene047888.t1 MTR_2g042330 25.685 292 194 12 117 392 155 439 4.67e-13 71.6
MS.gene047888.t1 MTR_1690s0010 27.801 241 153 10 88 313 111 345 5.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047888.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047888.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047888.t1 AT4G34240 64.854 478 168 0 12 489 70 547 0.0 649
MS.gene047888.t1 AT4G34240 64.854 478 168 0 12 489 55 532 0.0 648
MS.gene047888.t1 AT1G44170 70.560 411 121 0 77 487 9 419 0.0 634
MS.gene047888.t1 AT4G34240 67.574 404 131 0 86 489 2 405 0.0 569
MS.gene047888.t1 AT4G36250 47.826 460 237 1 15 471 6 465 4.95e-163 470
MS.gene047888.t1 AT4G34240 66.978 321 106 0 12 332 70 390 3.69e-151 436
MS.gene047888.t1 AT3G66658 27.146 431 296 6 35 451 106 532 9.44e-44 162
MS.gene047888.t1 AT3G66658 27.361 413 282 6 35 433 106 514 1.98e-43 162
MS.gene047888.t1 AT1G74920 28.810 420 284 10 39 448 69 483 9.82e-42 155
MS.gene047888.t1 AT1G74920 28.810 420 284 10 39 448 74 488 1.17e-41 155
MS.gene047888.t1 AT3G48170 27.338 417 289 9 39 446 74 485 1.40e-36 141
MS.gene047888.t1 AT1G23800 27.455 448 301 13 13 447 89 525 1.08e-33 134
MS.gene047888.t1 AT1G79440 29.912 341 228 10 113 446 184 520 1.14e-33 134
MS.gene047888.t1 AT3G48000 26.549 452 300 14 13 447 93 529 7.22e-29 120
MS.gene047888.t1 AT3G24503 27.729 339 235 7 116 447 157 492 2.68e-27 115
MS.gene047888.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047888.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047888.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047888.t1 AT2G24270 28.707 317 217 7 117 430 198 508 1.00e-24 107
MS.gene047888.t1 AT2G14170 27.378 347 228 12 116 446 248 586 5.74e-18 87.4
MS.gene047888.t1 AT2G14170 27.378 347 228 12 116 446 139 477 6.43e-18 86.7
MS.gene047888.t1 AT1G23800 30.078 256 155 9 13 252 89 336 2.83e-17 84.3
MS.gene047888.t1 AT2G14170 27.273 308 203 10 114 407 246 546 1.09e-16 83.2
MS.gene047888.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2
MS.gene047888.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3.1:+71158009 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3.1:+71158103 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3.1:-71157890 MS.gene047888:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3.1:-71158926 MS.gene047888:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3.1:+71158104 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3.1:-71158001 MS.gene047888:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3.1:-71157905 MS.gene047888:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3.1:-71157297 MS.gene047888:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3.1:-71157298 MS.gene047888:CDS
TTTGTTGTTATAACGTAATC+AGG 0.304335 3.1:+71158137 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3.1:-71158925 MS.gene047888:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3.1:+71157971 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3.1:-71158197 MS.gene047888:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3.1:-71158580 MS.gene047888:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3.1:-71157121 MS.gene047888:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3.1:-71158529 MS.gene047888:intron
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3.1:-71161087 MS.gene047888:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3.1:-71157936 MS.gene047888:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3.1:-71158014 MS.gene047888:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3.1:+71159432 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3.1:-71158939 MS.gene047888:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3.1:+71157157 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3.1:-71157274 MS.gene047888:CDS
GAAGATGGTTGATGAACAAC+AGG 0.411988 3.1:-71161016 MS.gene047888:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3.1:-71157275 MS.gene047888:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3.1:-71159010 MS.gene047888:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3.1:+71157961 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3.1:-71157478 MS.gene047888:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3.1:+71158998 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3.1:-71158573 MS.gene047888:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3.1:-71157719 MS.gene047888:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3.1:-71157924 MS.gene047888:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3.1:-71161171 None:intergenic
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3.1:-71157450 MS.gene047888:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3.1:+71159453 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3.1:-71159611 MS.gene047888:intron
ACATTTGAATCCACAACAGT+TGG 0.479478 3.1:+71158540 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3.1:-71157879 MS.gene047888:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3.1:-71158847 MS.gene047888:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3.1:-71157556 MS.gene047888:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3.1:-71161118 MS.gene047888:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3.1:+71159005 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3.1:+71157754 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3.1:-71157296 MS.gene047888:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3.1:-71158190 MS.gene047888:CDS
TTACGGGTGATGCATCGATA+AGG 0.514070 3.1:-71157186 MS.gene047888:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3.1:+71158577 None:intergenic
GTAAATAAATATGCAGCAAG+TGG 0.517979 3.1:+71157498 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3.1:+71158938 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3.1:+71158148 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3.1:-71158550 MS.gene047888:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3.1:-71158885 MS.gene047888:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3.1:-71161138 MS.gene047888:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3.1:-71161112 MS.gene047888:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3.1:+71158570 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3.1:+71157231 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3.1:-71158176 MS.gene047888:CDS
GGGTGAAGAGTCACAGAAGA+AGG 0.530603 3.1:-71161151 MS.gene047888:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3.1:-71158888 MS.gene047888:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3.1:-71158570 MS.gene047888:CDS
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3.1:-71158995 MS.gene047888:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3.1:+71157160 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3.1:-71161065 MS.gene047888:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3.1:+71159006 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3.1:-71157887 MS.gene047888:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3.1:-71161052 MS.gene047888:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3.1:-71157146 MS.gene047888:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3.1:+71157686 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3.1:-71157447 MS.gene047888:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3.1:-71158846 MS.gene047888:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3.1:-71159416 MS.gene047888:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3.1:-71158891 MS.gene047888:CDS
CGTCGTTGGTGAAGGAGCTG+AGG 0.553449 3.1:-71161104 MS.gene047888:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3.1:-71157900 MS.gene047888:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3.1:+71160965 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3.1:+71157734 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3.1:-71157449 MS.gene047888:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3.1:-71157133 MS.gene047888:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3.1:+71158953 None:intergenic
GAAAATTTCATACCAATTTG+GGG 0.571184 3.1:+71158105 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3.1:-71159627 MS.gene047888:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3.1:+71157755 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3.1:-71157261 MS.gene047888:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3.1:+71157161 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3.1:-71157295 MS.gene047888:CDS
AAAGATGTTGGACGACGAGA+AGG 0.593143 3.1:-71157912 MS.gene047888:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3.1:-71159623 MS.gene047888:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3.1:+71157695 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3.1:-71158626 MS.gene047888:CDS
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3.1:-71159641 MS.gene047888:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3.1:-71158887 MS.gene047888:CDS
GTCGTTGGTGAAGGAGCTGA+GGG 0.610188 3.1:-71161103 MS.gene047888:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3.1:-71158208 MS.gene047888:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3.1:-71157528 MS.gene047888:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3.1:-71161130 MS.gene047888:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3.1:+71160955 None:intergenic
TCCATTGCTTCCCATCATCA+CGG 0.625141 3.1:-71157696 MS.gene047888:intron
GAACTTATTAGGGAGGTACA+TGG 0.626641 3.1:-71158915 MS.gene047888:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3.1:+71158106 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3.1:+71158934 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3.1:+71157114 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3.1:-71158886 MS.gene047888:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3.1:-71159441 MS.gene047888:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3.1:-71157729 MS.gene047888:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3.1:+71159426 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3.1:+71158862 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3.1:-71157448 MS.gene047888:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3.1:-71158922 MS.gene047888:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3.1:-71158616 MS.gene047888:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3.1:-71158613 MS.gene047888:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3.1:-71157262 MS.gene047888:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3.1:+71157930 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3.1:-71160950 MS.gene047888:intron
TGAAGAGTCACAGAAGAAGG+TGG 0.679895 3.1:-71161148 MS.gene047888:CDS
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3.1:-71158984 MS.gene047888:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3.1:+71160952 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3.1:+71157245 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3.1:+71157194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAACTTAAAATATTTTT+GGG - chr3.1:71158349-71158368 MS.gene047888:intron 10.0%
!!! TCATATATATATGATTTTTA+TGG - chr3.1:71157345-71157364 MS.gene047888:intron 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG - chr3.1:71157581-71157600 MS.gene047888:intron 10.0%
!! TAGATTATTAAAGAAACTAA+AGG + chr3.1:71159175-71159194 None:intergenic 15.0%
!!! GATTCAACTTAAAATATTTT+TGG - chr3.1:71158348-71158367 MS.gene047888:intron 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG + chr3.1:71159816-71159835 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG - chr3.1:71160024-71160043 MS.gene047888:intron 15.0%
!!! TATATCTAAATCAATTTGTT+AGG - chr3.1:71157848-71157867 MS.gene047888:intron 15.0%
!! AAAAATAAACTTTGATTGAC+TGG - chr3.1:71158021-71158040 MS.gene047888:intron 20.0%
!! AAAATTCACAATACCAATAA+TGG + chr3.1:71159523-71159542 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG + chr3.1:71159003-71159022 None:intergenic 20.0%
!! AGTTCCTTTAATAATATTTC+AGG - chr3.1:71158747-71158766 MS.gene047888:intron 20.0%
!! TACAAATGTTACAAAATGTT+CGG + chr3.1:71158447-71158466 None:intergenic 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG + chr3.1:71160007-71160026 None:intergenic 20.0%
!! TTAGCCTGAAATATTATTAA+AGG + chr3.1:71158754-71158773 None:intergenic 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG - chr3.1:71158372-71158391 MS.gene047888:intron 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG + chr3.1:71160008-71160027 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG + chr3.1:71157631-71157650 None:intergenic 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG - chr3.1:71157987-71158006 MS.gene047888:CDS 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG + chr3.1:71157630-71157649 None:intergenic 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG - chr3.1:71157457-71157476 MS.gene047888:CDS 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG - chr3.1:71159476-71159495 MS.gene047888:CDS 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG - chr3.1:71159915-71159934 MS.gene047888:intron 20.0%
!!! GTAACTAAACAAACATATTT+TGG - chr3.1:71158464-71158483 MS.gene047888:intron 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG + chr3.1:71158425-71158444 None:intergenic 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG - chr3.1:71157986-71158005 MS.gene047888:CDS 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG - chr3.1:71159601-71159620 MS.gene047888:intron 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG - chr3.1:71157584-71157603 MS.gene047888:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG - chr3.1:71157486-71157505 MS.gene047888:CDS 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG + chr3.1:71158418-71158437 None:intergenic 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG - chr3.1:71160640-71160659 MS.gene047888:intron 20.0%
!!! TTCACCTTCTTTTTTTTTTA+CGG - chr3.1:71157649-71157668 MS.gene047888:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG - chr3.1:71157970-71157989 MS.gene047888:CDS 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG - chr3.1:71160639-71160658 MS.gene047888:intron 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG - chr3.1:71159044-71159063 MS.gene047888:intron 20.0%
! AAAATTTCATACCAATTTGG+GGG + chr3.1:71160143-71160162 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG + chr3.1:71157537-71157556 None:intergenic 25.0%
! AGCAACTTAAACATGAAATT+AGG + chr3.1:71157324-71157343 None:intergenic 25.0%
! ATAAGTAACATTGCATGATA+AGG + chr3.1:71160902-71160921 None:intergenic 25.0%
! ATAATACTTTCTTTCTTGCT+TGG - chr3.1:71160672-71160691 MS.gene047888:intron 25.0%
! CACTATATATCGAAAACTAT+TGG + chr3.1:71157901-71157920 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG + chr3.1:71160144-71160163 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG + chr3.1:71160278-71160297 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG + chr3.1:71160145-71160164 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG + chr3.1:71157566-71157585 None:intergenic 25.0%
! TAAGCCATTTGTATAACAAA+AGG + chr3.1:71159051-71159070 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG + chr3.1:71160006-71160025 None:intergenic 25.0%
! TATACTATTCTCAACTACAT+TGG - chr3.1:71158326-71158345 MS.gene047888:intron 25.0%
! TGACTGGAAAATAAAAAAGA+AGG + chr3.1:71159954-71159973 None:intergenic 25.0%
! TGTTCCGTAAAAAAAAAAGA+AGG + chr3.1:71157656-71157675 None:intergenic 25.0%
! TTAATAAGTCAATCCAAACA+TGG + chr3.1:71159755-71159774 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG - chr3.1:71159423-71159442 MS.gene047888:CDS 25.0%
!! GTATCCAATTTAAAACAATG+GGG - chr3.1:71160641-71160660 MS.gene047888:intron 25.0%
!! TTTTATATACTGCAATGCAA+TGG - chr3.1:71160435-71160454 MS.gene047888:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG - chr3.1:71159607-71159626 MS.gene047888:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG - chr3.1:71159729-71159748 MS.gene047888:intron 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG - chr3.1:71157811-71157830 MS.gene047888:intron 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG - chr3.1:71158057-71158076 MS.gene047888:intron 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG + chr3.1:71160112-71160131 None:intergenic 25.0%
AATACAACTAAGCAATTGAC+AGG - chr3.1:71158490-71158509 MS.gene047888:intron 30.0%
AATCACGTAAATACAAGTCA+CGG - chr3.1:71157714-71157733 MS.gene047888:CDS 30.0%
AATCCTAATAGCCATAACTT+TGG - chr3.1:71158100-71158119 MS.gene047888:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG - chr3.1:71157801-71157820 MS.gene047888:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG + chr3.1:71158391-71158410 None:intergenic 30.0%
CAAACCAATTTATTATGCCT+AGG + chr3.1:71157808-71157827 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG + chr3.1:71158278-71158297 None:intergenic 30.0%
CCTACTAAACTTGAATTAAG+AGG + chr3.1:71160415-71160434 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG - chr3.1:71157806-71157825 MS.gene047888:intron 30.0%
GATAAGGATATATGCATTCA+TGG + chr3.1:71160886-71160905 None:intergenic 30.0%
GGATTCAAATGTCAATTTAG+AGG - chr3.1:71159717-71159736 MS.gene047888:intron 30.0%
GGGAAAATTTCATACCAATT+TGG + chr3.1:71160146-71160165 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG + chr3.1:71160751-71160770 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG - chr3.1:71160191-71160210 MS.gene047888:intron 30.0%
TAACTCAAATACAACCAACA+AGG + chr3.1:71159142-71159161 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG - chr3.1:71159355-71159374 MS.gene047888:intron 30.0%
TACAAAGCAGAAATTGATGA+AGG - chr3.1:71161100-71161119 MS.gene047888:CDS 30.0%
TACAAATGACAACAAGTTCA+AGG - chr3.1:71160768-71160787 MS.gene047888:intron 30.0%
TATTGTGTCAACCAAAGTTA+TGG + chr3.1:71158114-71158133 None:intergenic 30.0%
TCATATTGCTTTCATGTGTA+AGG + chr3.1:71159862-71159881 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG + chr3.1:71159970-71159989 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG + chr3.1:71158274-71158293 None:intergenic 30.0%
TTTATTCTTACCGTGATGAT+GGG + chr3.1:71160563-71160582 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG + chr3.1:71160167-71160186 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG - chr3.1:71157503-71157522 MS.gene047888:CDS 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG - chr3.1:71160412-71160431 MS.gene047888:intron 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG - chr3.1:71158275-71158294 MS.gene047888:intron 30.0%
! GGGTAAAATAAACCTTTTCT+GGG + chr3.1:71158650-71158669 None:intergenic 30.0%
! GGTAAAATAAACCTTTTCTG+GGG + chr3.1:71158649-71158668 None:intergenic 30.0%
! TGGGACAAAATTTTGTATAC+AGG - chr3.1:71159419-71159438 MS.gene047888:CDS 30.0%
! TTTAGAACTCTTAACAACGA+GGG + chr3.1:71160166-71160185 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG + chr3.1:71160564-71160583 None:intergenic 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG - chr3.1:71158570-71158589 MS.gene047888:CDS 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG - chr3.1:71159615-71159634 MS.gene047888:CDS 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG - chr3.1:71159616-71159635 MS.gene047888:CDS 30.0%
AAGTAATTGTATCGTCGGAA+CGG + chr3.1:71157532-71157551 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG - chr3.1:71160245-71160264 MS.gene047888:intron 35.0%
ACATTTGAATCCACAACAGT+TGG + chr3.1:71159709-71159728 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG + chr3.1:71158285-71158304 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG - chr3.1:71157742-71157761 MS.gene047888:CDS 35.0%
ATAATGAGTGAGGAGATCTT+TGG - chr3.1:71160527-71160546 MS.gene047888:intron 35.0%
ATGGAGGAATAAAACTTCCT+AGG - chr3.1:71157788-71157807 MS.gene047888:intron 35.0%
CAACCAAAGTTATGGCTATT+AGG + chr3.1:71158106-71158125 None:intergenic 35.0%
CAATGCAGTAGTTTCATCAA+CGG + chr3.1:71159387-71159406 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG + chr3.1:71158392-71158411 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG + chr3.1:71158923-71158942 None:intergenic 35.0%
CTCATTATCAGAGAATCTTG+TGG + chr3.1:71160515-71160534 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG + chr3.1:71158862-71158881 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG - chr3.1:71158623-71158642 MS.gene047888:CDS 35.0%
GCTTTCCAATTCTGTCTTTA+AGG + chr3.1:71160240-71160259 None:intergenic 35.0%
GGATATATGCATTCATGGAA+AGG + chr3.1:71160881-71160900 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG + chr3.1:71158186-71158205 None:intergenic 35.0%
GTAAGACACGAAGTTATGAA+TGG - chr3.1:71157181-71157200 MS.gene047888:CDS 35.0%
GTTCTGTTCTGTTAAACAAC+TGG + chr3.1:71159120-71159139 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG + chr3.1:71160002-71160021 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG - chr3.1:71159359-71159378 MS.gene047888:intron 35.0%
TCTTGACACAAGCAAATTAC+AGG - chr3.1:71160459-71160478 MS.gene047888:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG - chr3.1:71160232-71160251 MS.gene047888:intron 35.0%
TGCAATTGGTATGCCATTAT+TGG - chr3.1:71159507-71159526 MS.gene047888:intron 35.0%
TGCATTGTTGCAACAAAAGT+GGG - chr3.1:71159400-71159419 MS.gene047888:intron 35.0%
TTAACAGAACAGAACCTTGT+TGG - chr3.1:71159125-71159144 MS.gene047888:intron 35.0%
TTTACTAGGTTACAGCTAGA+CGG - chr3.1:71160038-71160057 MS.gene047888:intron 35.0%
! AGATTCTCTGATAATGAGTG+AGG - chr3.1:71160517-71160536 MS.gene047888:intron 35.0%
! ATTGTTTTCAATGGCTATCC+AGG + chr3.1:71159807-71159826 None:intergenic 35.0%
! GGGGTAAAATAAACCTTTTC+TGG + chr3.1:71158651-71158670 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG + chr3.1:71158241-71158260 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG - chr3.1:71161019-71161038 MS.gene047888:CDS 35.0%
! TGGTTCATACTTTGCCATTT+GGG - chr3.1:71160949-71160968 MS.gene047888:intron 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG - chr3.1:71160797-71160816 MS.gene047888:intron 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG - chr3.1:71157953-71157972 MS.gene047888:CDS 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG - chr3.1:71160796-71160815 MS.gene047888:intron 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG - chr3.1:71161043-71161062 MS.gene047888:CDS 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG - chr3.1:71157769-71157788 MS.gene047888:intron 35.0%
!! GTATTGATTAAGGCCATGTT+TGG - chr3.1:71159739-71159758 MS.gene047888:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG - chr3.1:71159453-71159472 MS.gene047888:CDS 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG + chr3.1:71161018-71161037 None:intergenic 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG + chr3.1:71160648-71160667 None:intergenic 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG + chr3.1:71159282-71159301 None:intergenic 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG - chr3.1:71159493-71159512 MS.gene047888:intron 35.0%
AAAAAGGCAGTTCTTTACCG+TGG - chr3.1:71161035-71161054 MS.gene047888:CDS 40.0%
AAAAGACTTTGCCCCCAAAT+TGG - chr3.1:71160129-71160148 MS.gene047888:intron 40.0%
AAAAGGAAAGAGGTTGGACT+AGG + chr3.1:71158268-71158287 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG - chr3.1:71157722-71157741 MS.gene047888:CDS 40.0%
AACGTAATCAGGAGAAATGC+AGG + chr3.1:71160101-71160120 None:intergenic 40.0%
AAGTTGACCTTCAGCATGAT+TGG - chr3.1:71158868-71158887 MS.gene047888:CDS 40.0%
ACAGCTAGACGGATAATTTC+AGG - chr3.1:71160049-71160068 MS.gene047888:intron 40.0%
ACCATCCAAGAAAAACAGAC+TGG + chr3.1:71159461-71159480 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG - chr3.1:71159696-71159715 MS.gene047888:intron 40.0%
AGTCAAACCAATCATGCTGA+AGG + chr3.1:71158878-71158897 None:intergenic 40.0%
ATCTATAAGAGTTGTGGAGG+GGG - chr3.1:71159361-71159380 MS.gene047888:intron 40.0%
ATGACTAACACTACACCAAG+TGG + chr3.1:71158823-71158842 None:intergenic 40.0%
CACAATGCGCGATAAATCAT+TGG + chr3.1:71160288-71160307 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG - chr3.1:71157741-71157760 MS.gene047888:CDS 40.0%
CATCTATAAGAGTTGTGGAG+GGG - chr3.1:71159360-71159379 MS.gene047888:intron 40.0%
CCTTCTCAGCTGAAGAAATT+GGG + chr3.1:71158671-71158690 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG - chr3.1:71158619-71158638 MS.gene047888:CDS 40.0%
CGTAGCAGTTGAGAAAAACT+CGG - chr3.1:71158302-71158321 MS.gene047888:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG - chr3.1:71159358-71159377 MS.gene047888:intron 40.0%
CTGCATTGTTGCAACAAAAG+TGG - chr3.1:71159399-71159418 MS.gene047888:intron 40.0%
CTTAAAAGACAGGGACAAGA+AGG - chr3.1:71157751-71157770 MS.gene047888:CDS 40.0%
CTTCTCAGCTGAAGAAATTG+GGG + chr3.1:71158670-71158689 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG - chr3.1:71160678-71160697 MS.gene047888:intron 40.0%
GAAATAGTACCTGAACCACT+TGG - chr3.1:71158805-71158824 MS.gene047888:intron 40.0%
GACGGATAATTTCAGGAAAG+TGG - chr3.1:71160056-71160075 MS.gene047888:intron 40.0%
GCTAAGACTTAGAACCTGAT+TGG + chr3.1:71159932-71159951 None:intergenic 40.0%
GGCGCTAATTTATTCAATGG+AGG - chr3.1:71157772-71157791 MS.gene047888:intron 40.0%
GGTACTATTTCAGCTGAAGA+AGG + chr3.1:71158796-71158815 None:intergenic 40.0%
GGTTGTTTATGGAGGTGAAA+AGG - chr3.1:71160367-71160386 MS.gene047888:intron 40.0%
GTACATCAGTGAAGAGTAGA+AGG + chr3.1:71158556-71158575 None:intergenic 40.0%
GTGGTTCATACTTTGCCATT+TGG - chr3.1:71160948-71160967 MS.gene047888:intron 40.0%
TAGTGTTAGTCATCTCTGCT+TGG - chr3.1:71158830-71158849 MS.gene047888:CDS 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG + chr3.1:71158672-71158691 None:intergenic 40.0%
TCGTAGACAACAGTTTCAAG+CGG + chr3.1:71157297-71157316 None:intergenic 40.0%
TGAAAATGCTATGCAGGCAT+TGG + chr3.1:71158180-71158199 None:intergenic 40.0%
TGACACAAGCAAATTACAGG+AGG - chr3.1:71160462-71160481 MS.gene047888:intron 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG + chr3.1:71158304-71158323 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG - chr3.1:71159331-71159350 MS.gene047888:intron 40.0%
! GGAGCGTCTAATACAATAGT+GGG + chr3.1:71160494-71160513 None:intergenic 40.0%
! GGTTCATACTTTGCCATTTG+GGG - chr3.1:71160950-71160969 MS.gene047888:intron 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG - chr3.1:71159786-71159805 MS.gene047888:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG - chr3.1:71160951-71160970 MS.gene047888:CDS 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG + chr3.1:71158249-71158268 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG + chr3.1:71160495-71160514 None:intergenic 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG - chr3.1:71160798-71160817 MS.gene047888:intron 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG - chr3.1:71161150-71161169 MS.gene047888:CDS 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG - chr3.1:71159457-71159476 MS.gene047888:CDS 40.0%
!! GAAGATGGTTGATGAACAAC+AGG - chr3.1:71157230-71157249 MS.gene047888:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG - chr3.1:71157215-71157234 MS.gene047888:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG - chr3.1:71161044-71161063 MS.gene047888:CDS 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG - chr3.1:71160356-71160375 MS.gene047888:intron 40.0%
!! TTATGAATGGAGAGTATCGC+AGG - chr3.1:71157194-71157213 MS.gene047888:CDS 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG + chr3.1:71157743-71157762 None:intergenic 40.0%
AAAAGTGGGACGGATAGTGA+TGG - chr3.1:71159630-71159649 MS.gene047888:CDS 45.0%
AAAGATGTTGGACGACGAGA+AGG - chr3.1:71160334-71160353 MS.gene047888:intron 45.0%
AACAACACCAGTAACATCGC+CGG + chr3.1:71161135-71161154 None:intergenic 45.0%
AACACTACACCAAGTGGTTC+AGG + chr3.1:71158817-71158836 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG + chr3.1:71159243-71159262 None:intergenic 45.0%
AGTTACTCGCGAAATTCGCA+TGG - chr3.1:71158200-71158219 MS.gene047888:CDS 45.0%
ATGCATCACCCGTAAAACCA+CGG + chr3.1:71161055-71161074 None:intergenic 45.0%
CACTGCTGGCGAACTTATTA+GGG - chr3.1:71159321-71159340 MS.gene047888:intron 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG - chr3.1:71157108-71157127 MS.gene047888:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG - chr3.1:71158668-71158687 MS.gene047888:intron 45.0%
CGTCAAAGGAGAATTTCCCA+TGG + chr3.1:71161004-71161023 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG - chr3.1:71157296-71157315 MS.gene047888:CDS 45.0%
TAGACAACAGTTTCAAGCGG+TGG + chr3.1:71157294-71157313 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG + chr3.1:71159244-71159263 None:intergenic 45.0%
TATGAACCACAAGCTGCACA+AGG + chr3.1:71160938-71160957 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG - chr3.1:71159320-71159339 MS.gene047888:intron 45.0%
TCCATTGCTTCCCATCATCA+CGG - chr3.1:71160550-71160569 MS.gene047888:intron 45.0%
TCTGGCAAGGTTGTTTATGG+AGG - chr3.1:71160359-71160378 MS.gene047888:intron 45.0%
TCTTTACCAAGCGAGCAAAG+TGG + chr3.1:71160319-71160338 None:intergenic 45.0%
TGAAGAGTCACAGAAGAAGG+TGG - chr3.1:71157098-71157117 MS.gene047888:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG - chr3.1:71158150-71158169 MS.gene047888:CDS 45.0%
TGCTCGCTTGGTAAAGATGT+TGG - chr3.1:71160322-71160341 MS.gene047888:intron 45.0%
TTCTAACCACTTTGCTCGCT+TGG - chr3.1:71160310-71160329 MS.gene047888:intron 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG + chr3.1:71157284-71157303 None:intergenic 45.0%
! AGCTTCGATTTGATCAACGC+AGG - chr3.1:71160718-71160737 MS.gene047888:intron 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG - chr3.1:71157159-71157178 MS.gene047888:CDS 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG - chr3.1:71160799-71160818 MS.gene047888:intron 45.0%
! TTACGGGTGATGCATCGATA+AGG - chr3.1:71161060-71161079 MS.gene047888:CDS 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG - chr3.1:71159620-71159639 MS.gene047888:CDS 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG + chr3.1:71160229-71160248 None:intergenic 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG - chr3.1:71160070-71160089 MS.gene047888:intron 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG - chr3.1:71161146-71161165 MS.gene047888:CDS 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG + chr3.1:71159273-71159292 None:intergenic 45.0%
!!! AATTATAATTCATTTTTTTT+TGG - chr3.1:71157380-71157399 MS.gene047888:intron 5.0%
ACAATGGATGGCCCCAGAAA+AGG - chr3.1:71158635-71158654 MS.gene047888:intron 50.0%
ACACCTTACACCAGTCGTTC+TGG - chr3.1:71159666-71159685 MS.gene047888:intron 50.0%
AGTGGAATGGGTGCATACCA+TGG - chr3.1:71160984-71161003 MS.gene047888:CDS 50.0%
CCACAAGCTGCACAAGGAAA+AGG + chr3.1:71160932-71160951 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG - chr3.1:71158605-71158624 MS.gene047888:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG - chr3.1:71159236-71159255 MS.gene047888:intron 50.0%
CTTGGAACAGGTGAACAAGC+TGG - chr3.1:71160690-71160709 MS.gene047888:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG + chr3.1:71159296-71159315 None:intergenic 50.0%
GCTGCTATAGCTCCAACAAC+TGG + chr3.1:71159251-71159270 None:intergenic 50.0%
GGCATCAACCTGGAAATGAG+AGG + chr3.1:71160219-71160238 None:intergenic 50.0%
GGGTGAAGAGTCACAGAAGA+AGG - chr3.1:71157095-71157114 MS.gene047888:CDS 50.0%
GTGGAATGGGTGCATACCAT+GGG - chr3.1:71160985-71161004 MS.gene047888:CDS 50.0%
GTTGTTGGAGCTATAGCAGC+CGG - chr3.1:71159251-71159270 MS.gene047888:intron 50.0%
TGCTGGCGAACTTATTAGGG+AGG - chr3.1:71159324-71159343 MS.gene047888:intron 50.0%
TGGCTATCCAGGAGAACTGA+AGG + chr3.1:71159796-71159815 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG - chr3.1:71160341-71160360 MS.gene047888:intron 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG - chr3.1:71160957-71160976 MS.gene047888:CDS 50.0%
! AGGAAAGAGGTTGGACTAGG+CGG + chr3.1:71158265-71158284 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG - chr3.1:71160929-71160948 MS.gene047888:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG - chr3.1:71161113-71161132 MS.gene047888:CDS 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG + chr3.1:71160554-71160573 None:intergenic 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG - chr3.1:71160972-71160991 MS.gene047888:CDS 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG - chr3.1:71160208-71160227 MS.gene047888:intron 50.0%
AGTGGGACGGATAGTGATGG+CGG - chr3.1:71159633-71159652 MS.gene047888:CDS 55.0%
CTGTCACCAACTCCCCCAAA+TGG + chr3.1:71160966-71160985 None:intergenic 55.0%
GCTCCAGAACGACTGGTGTA+AGG + chr3.1:71159672-71159691 None:intergenic 55.0%
GGTGGTGTTTGACGGAGAAG+CGG - chr3.1:71157116-71157135 MS.gene047888:CDS 55.0%
! GTCGTTGGTGAAGGAGCTGA+GGG - chr3.1:71157143-71157162 MS.gene047888:CDS 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG - chr3.1:71159673-71159692 MS.gene047888:intron 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG - chr3.1:71160346-71160365 MS.gene047888:intron 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG - chr3.1:71160971-71160990 MS.gene047888:CDS 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG - chr3.1:71160966-71160985 MS.gene047888:CDS 55.0%
CCTCCAAGCTCCAGAACGAC+TGG + chr3.1:71159679-71159698 None:intergenic 60.0%
CTAGTCGCCGGCGATGTTAC+TGG - chr3.1:71161125-71161144 MS.gene047888:CDS 60.0%
GTTCGCCAGCAGTGAAGACG+AGG + chr3.1:71159315-71159334 None:intergenic 60.0%
TATAGCAGCCGGAAACGCCG+TGG - chr3.1:71159262-71159281 MS.gene047888:intron 60.0%
TCCAGCCTCGTCTTCACTGC+TGG - chr3.1:71159307-71159326 MS.gene047888:intron 60.0%
! CGTCGTTGGTGAAGGAGCTG+AGG - chr3.1:71157142-71157161 MS.gene047888:CDS 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG - chr3.1:71159676-71159695 MS.gene047888:intron 60.0%
GCCAGCAGTGAAGACGAGGC+TGG + chr3.1:71159311-71159330 None:intergenic 65.0%
! AGCGGCGTCGTCGTTGGTGA+AGG - chr3.1:71157134-71157153 MS.gene047888:CDS 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG - chr3.1:71157128-71157147 MS.gene047888:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 71157090 71161178 71157090 ID=MS.gene047888
chr3.1 mRNA 71157090 71161178 71157090 ID=MS.gene047888.t1;Parent=MS.gene047888
chr3.1 exon 71160951 71161178 71160951 ID=MS.gene047888.t1.exon1;Parent=MS.gene047888.t1
chr3.1 CDS 71160951 71161178 71160951 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71159612 71159680 71159612 ID=MS.gene047888.t1.exon2;Parent=MS.gene047888.t1
chr3.1 CDS 71159612 71159680 71159612 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71159403 71159499 71159403 ID=MS.gene047888.t1.exon3;Parent=MS.gene047888.t1
chr3.1 CDS 71159403 71159499 71159403 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71158828 71159034 71158828 ID=MS.gene047888.t1.exon4;Parent=MS.gene047888.t1
chr3.1 CDS 71158828 71159034 71158828 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71158530 71158645 71158530 ID=MS.gene047888.t1.exon5;Parent=MS.gene047888.t1
chr3.1 CDS 71158530 71158645 71158530 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71158118 71158222 71158118 ID=MS.gene047888.t1.exon6;Parent=MS.gene047888.t1
chr3.1 CDS 71158118 71158222 71158118 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71157866 71158038 71157866 ID=MS.gene047888.t1.exon7;Parent=MS.gene047888.t1
chr3.1 CDS 71157866 71158038 71157866 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71157697 71157787 71157697 ID=MS.gene047888.t1.exon8;Parent=MS.gene047888.t1
chr3.1 CDS 71157697 71157787 71157697 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71157419 71157568 71157419 ID=MS.gene047888.t1.exon9;Parent=MS.gene047888.t1
chr3.1 CDS 71157419 71157568 71157419 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
chr3.1 exon 71157090 71157323 71157090 ID=MS.gene047888.t1.exon10;Parent=MS.gene047888.t1
chr3.1 CDS 71157090 71157323 71157090 ID=cds.MS.gene047888.t1;Parent=MS.gene047888.t1
Gene Sequence

>MS.gene047888

ATGTCGGGTGAAGAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGGTACCTAATTTCATGTTTAAGTTGCTTTCATATATATATGATTTTTATGGTCTCTCTTTTTAAATTATAATTCATTTTTTTTTGGTACGTGCAATTGAAATCGATAGAAGAGCTAGAGAATCAAGTTTTTTGTTATAACATAAACATCATAAGTTTTCAAGGCTGAGATATTCTTGAGATTTTTCATTTGGAGTCACTATTATGATGGCAACCGTTCCGACGATACAATTACTTTGATTTTTTTTCCTTGTATGACGTCAATATTTTATGTTTTCTTTAATAAAGGAGGAAACATGCTTTTCACTTTTTCCCTTCAAAAAGAAAAATGCTTTTCACCTTCTTTTTTTTTTACGGAACATGCTTTTCACTTGAACGATCACATTAAAGTTACTTCACAATCACGTAAATACAAGTCACGGAAACCAGGATGCTTCTTAAAAGACAGGGACAAGAAGGCGCTAATTTATTCAATGGAGGAATAAAACTTCCTAGGCATAATAAATTGGTTTGGTTTGGTTTTTATGAGAAAATATATCTAAATCAATTTGTTAGGAAATTTGAAAGTTAGTAGATAATTTGACCAATAGTTTTCGATATATAGTGATACTCTTTCTTTCAAATGATCGATCAAAGAATTGTGAGAACTAAAGTGTTCTGGAAAATATAAGTAAAAGGTGTATGTAAAATAAGGGTAAATTACAAGAAAAATAAACTTTGATTGACTGGTGTGTATGTAAAATGTTTTTTACAATGAGTAGTTGGAGATAAAAATGTTAAAGCTAAATCCTAATAGCCATAACTTTGGTTGACACAATATGCGCTCAGCTCAACTTGCGTATTAGTGTGAGACTGTGGCATGCCAATGCCTGCATAGCATTTTCAAGTTACTCGCGAAATTCGCATGGTCATGTGTGAGTGTGCCTCTTGACCGTGCTTAAAATTAGCCGCCTAGTCCAACCTCTTTCCTTTTTACTAAATGGACTCCGTAGCAGTTGAGAAAAACTCGGTTATACTATTCTCAACTACATTGGATTCAACTTAAAATATTTTTGGGTTTAAAAATTTAGTATCCCTTGGTTTCATTTCACTCAATGACACCGCTTTCCATAAATTCAAAATAGAGTAACCGAACATTTTGTAACATTTGTAACTAAACAAACATATTTTGGATGAATACAACTAAGCAATTGACAGGTCAATGTTGCAATCAATACAACTATAATAAAGATAATTTTCCTTCTACTCTTCACTGATGTACTTTGTTTTGCAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGTTTATTTTACCCCAATTTCTTCAGCTGAGAAGGACATTTTTCATTTATATTTCTTATATATAGTTTATTTGAATATTTTTATAACAAAAAGTTCCTTTAATAATATTTCAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTGTAAGTTGACCTTCAGCATGATTGGTTTGACTTATTTGAGTTTATTTACTTACACCAACATTCTTGAGACTGTTTAGTAGAACTTATATTGAAACAACTTATATGCAAGTCTACAAGCTGTTTTTGACTTATTTCCATAAATTTTTCACGATATCTTATAAAAACAGTTTGACTTTATTTTACCTTTTGTTATACAAATGGCTTATACATAGACACTTATATGATAAATGTGTATGCTATAAACACTTCATCCAGTTGTTTAACAGAACAGAACCTTGTTGGTTGTATTTGAGTTAATATTTTGAGCCTTTAGTTTCTTTAATAATCTATGAAGACTATAATATCACTCTCTCTGTCTGTCTTTTCAGTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTTGGTCTTGTTTATCACCAGTCTGTTTTTCTTGGATGGTTATGAATTGTTATTTTGGTTTTGTCGTGCAATTGGTATGCCATTATTGGTATTGTGAATTTTGAAATCTCATCTCAGATAATCAAATAAATACATCATTTGAACAAAAGATTTCATAGCATAAGTAATTACTTGATTTTCAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTATTGATTAAGGCCATGTTTGGATTGACTTATTAAGTTGTTATCAAGTTATTTCCTTCAGTTCTCCTGGATAGCCATTGAAAACAATTTAACTTTATTTTATCTTTTATTATAAAAAAACCTTACACATGAAAGCAATATGACAAATCGACAAGTGTTTATGTTATAAGCGTTTAATTAAATTTTTCATCCAATCAGGTTCTAAGTCTTAGCCTTCTTTTTTATTTTCCAGTCAGTAACTAGTTATATCACTTTGATCTCCTTCCCCTTAACTCATTATTGACTTAAATTAATTTGTGTTTACTAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTATGAAATTTTCCCTCGTTGTTAAGAGTTCTAAATATCTGTCTTTGTGTATCTAATGTTTGGTGCCTCTCATTTCCAGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGTAAGCTCTCCTCTTAATTCAAGTTTAGTAGGTTTTATATACTGCAATGCAATGGATCTTGACACAAGCAAATTACAGGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTAAGAATAAAAGACACAAAGAACTCTTTGAAAAGTACTCAAATATTCATCGATAAGCTTCATTAGCTTGTATCCAATTTAAAACAATGGGGCATCAATTATAATACTTTCTTTCTTGCTTGGAACAGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATGTAATAGTTTGTTTTTTATTTTCTAAAACCTTTCCATGAATGCATATATCCTTATCATGCAATGTTACTTATATCTTTTCCTTTTCCTTGTGCAGCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA
Protein sequence

>MS.gene047888.t1

MSGEESQKKVVFDGEAASSLVKELRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS