AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047890.t1 MTR_3g088150 96.939 490 14 1 1 489 1 490 0.0 978
MS.gene047890.t1 MTR_1g029840 78.351 485 105 0 5 489 4 488 0.0 811
MS.gene047890.t1 MTR_1g029840 77.755 481 107 0 9 489 8 488 0.0 800
MS.gene047890.t1 MTR_8g094600 66.804 485 161 0 5 489 57 541 0.0 705
MS.gene047890.t1 MTR_8g076480 47.335 469 247 0 14 482 6 474 5.84e-165 475
MS.gene047890.t1 MTR_2g097950 46.764 479 252 1 12 487 15 493 5.48e-159 461
MS.gene047890.t1 MTR_4g065040 50.881 454 220 1 21 471 9 462 8.40e-146 427
MS.gene047890.t1 MTR_2g097950 44.328 476 233 2 12 487 15 458 1.20e-143 420
MS.gene047890.t1 MTR_1222s0010 36.387 382 231 5 18 395 6 379 6.58e-78 258
MS.gene047890.t1 MTR_1314s0010 35.799 338 207 4 117 446 1 336 6.37e-71 229
MS.gene047890.t1 MTR_3g078550 29.954 434 285 9 26 446 28 455 4.32e-40 150
MS.gene047890.t1 MTR_3g078550 29.954 434 285 9 26 446 58 485 8.66e-40 150
MS.gene047890.t1 MTR_4g106510 29.017 417 282 9 39 446 74 485 3.07e-39 149
MS.gene047890.t1 MTR_2g034160 24.777 448 307 8 35 466 106 539 5.22e-39 149
MS.gene047890.t1 MTR_3g078490 29.263 434 288 10 26 446 88 515 1.13e-37 145
MS.gene047890.t1 MTR_2g067660 27.874 348 242 8 113 454 178 522 7.27e-33 131
MS.gene047890.t1 MTR_8g064170 26.773 437 302 11 21 447 104 532 5.61e-30 123
MS.gene047890.t1 MTR_4g107040 26.770 452 299 13 13 447 99 535 6.73e-29 120
MS.gene047890.t1 MTR_8g083530 28.070 342 230 9 116 447 159 494 2.30e-27 115
MS.gene047890.t1 MTR_3g078170 27.212 452 297 14 13 447 97 533 4.10e-27 114
MS.gene047890.t1 MTR_4g131180 26.244 442 301 11 22 447 53 485 3.26e-26 111
MS.gene047890.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047890.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047890.t1 MTR_6g086340 27.515 338 235 8 116 446 156 490 8.09e-24 104
MS.gene047890.t1 MTR_1g014320 25.328 458 315 12 6 447 39 485 9.41e-24 104
MS.gene047890.t1 MTR_4g131180 26.119 402 273 10 22 407 53 446 7.77e-23 101
MS.gene047890.t1 MTR_8g064170 24.773 440 287 13 15 447 98 500 8.36e-22 98.6
MS.gene047890.t1 MTR_3g078490 29.310 290 196 6 26 308 58 345 4.82e-19 89.0
MS.gene047890.t1 MTR_2g009750 28.710 310 195 11 114 407 147 446 2.08e-18 88.2
MS.gene047890.t1 MTR_2g009750 28.710 310 195 11 114 407 146 445 2.62e-18 88.2
MS.gene047890.t1 MTR_2g009750 28.710 310 196 11 114 407 147 447 3.01e-18 87.8
MS.gene047890.t1 MTR_4g093170 27.036 307 205 8 114 407 174 474 3.43e-18 87.8
MS.gene047890.t1 MTR_3g078170 27.049 366 237 13 13 361 97 449 6.85e-18 86.3
MS.gene047890.t1 MTR_8g083520 26.163 344 201 10 116 447 150 452 3.40e-17 84.3
MS.gene047890.t1 MTR_8g083520 26.163 344 201 10 116 447 70 372 3.84e-17 83.6
MS.gene047890.t1 MTR_4g020710 48.684 76 39 0 294 369 8 83 6.14e-17 77.8
MS.gene047890.t1 MTR_4g020720 39.200 125 67 4 184 302 116 237 3.07e-16 79.3
MS.gene047890.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.55e-14 75.9
MS.gene047890.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.75e-14 75.9
MS.gene047890.t1 MTR_8g083530 35.762 151 88 5 116 260 159 306 1.91e-13 72.0
MS.gene047890.t1 MTR_1399s0020 27.830 212 143 5 253 462 145 348 3.19e-13 71.2
MS.gene047890.t1 MTR_2g042330 25.685 292 194 12 117 392 155 439 4.67e-13 71.6
MS.gene047890.t1 MTR_1690s0010 27.801 241 153 10 88 313 111 345 5.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047890.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047890.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047890.t1 AT4G34240 64.854 478 168 0 12 489 70 547 0.0 649
MS.gene047890.t1 AT4G34240 64.854 478 168 0 12 489 55 532 0.0 648
MS.gene047890.t1 AT1G44170 70.560 411 121 0 77 487 9 419 0.0 634
MS.gene047890.t1 AT4G34240 67.574 404 131 0 86 489 2 405 0.0 569
MS.gene047890.t1 AT4G36250 47.826 460 237 1 15 471 6 465 4.95e-163 470
MS.gene047890.t1 AT4G34240 66.978 321 106 0 12 332 70 390 3.69e-151 436
MS.gene047890.t1 AT3G66658 27.146 431 296 6 35 451 106 532 9.44e-44 162
MS.gene047890.t1 AT3G66658 27.361 413 282 6 35 433 106 514 1.98e-43 162
MS.gene047890.t1 AT1G74920 28.810 420 284 10 39 448 69 483 9.82e-42 155
MS.gene047890.t1 AT1G74920 28.810 420 284 10 39 448 74 488 1.17e-41 155
MS.gene047890.t1 AT3G48170 27.338 417 289 9 39 446 74 485 1.40e-36 141
MS.gene047890.t1 AT1G23800 27.455 448 301 13 13 447 89 525 1.08e-33 134
MS.gene047890.t1 AT1G79440 29.912 341 228 10 113 446 184 520 1.14e-33 134
MS.gene047890.t1 AT3G48000 26.549 452 300 14 13 447 93 529 7.22e-29 120
MS.gene047890.t1 AT3G24503 27.729 339 235 7 116 447 157 492 2.68e-27 115
MS.gene047890.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047890.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047890.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047890.t1 AT2G24270 28.707 317 217 7 117 430 198 508 1.00e-24 107
MS.gene047890.t1 AT2G14170 27.378 347 228 12 116 446 248 586 5.74e-18 87.4
MS.gene047890.t1 AT2G14170 27.378 347 228 12 116 446 139 477 6.43e-18 86.7
MS.gene047890.t1 AT1G23800 30.078 256 155 9 13 252 89 336 2.83e-17 84.3
MS.gene047890.t1 AT2G14170 27.273 308 203 10 114 407 246 546 1.09e-16 83.2
MS.gene047890.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2
MS.gene047890.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3.1:+71146017 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3.1:+71146111 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3.1:-71145898 MS.gene047890:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3.1:-71146934 MS.gene047890:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3.1:+71146112 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3.1:-71146009 MS.gene047890:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3.1:-71145913 MS.gene047890:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3.1:-71145305 MS.gene047890:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3.1:-71145306 MS.gene047890:CDS
TTTGTTGTTATAACGTAATC+AGG 0.304335 3.1:+71146145 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3.1:-71146933 MS.gene047890:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3.1:+71145979 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3.1:-71146205 MS.gene047890:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3.1:-71146588 MS.gene047890:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3.1:-71145129 MS.gene047890:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3.1:-71146537 MS.gene047890:intron
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3.1:-71149093 MS.gene047890:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3.1:-71145944 MS.gene047890:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3.1:-71146022 MS.gene047890:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3.1:+71147440 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3.1:-71146947 MS.gene047890:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3.1:+71145165 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3.1:-71145282 MS.gene047890:CDS
GAAGATGGTTGATGAACAAC+AGG 0.411988 3.1:-71149022 MS.gene047890:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3.1:-71145283 MS.gene047890:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3.1:-71147018 MS.gene047890:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3.1:+71145969 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3.1:-71145486 MS.gene047890:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3.1:+71147006 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3.1:-71146581 MS.gene047890:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3.1:-71145727 MS.gene047890:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3.1:-71145932 MS.gene047890:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3.1:-71149177 None:intergenic
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3.1:-71145458 MS.gene047890:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3.1:+71147461 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3.1:-71147619 MS.gene047890:intron
ACATTTGAATCCACAACAGT+TGG 0.479478 3.1:+71146548 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3.1:-71145887 MS.gene047890:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3.1:-71146855 MS.gene047890:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3.1:-71145564 MS.gene047890:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3.1:-71149124 MS.gene047890:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3.1:+71147013 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3.1:+71145762 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3.1:-71145304 MS.gene047890:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3.1:-71146198 MS.gene047890:CDS
TTACGGGTGATGCATCGATA+AGG 0.514070 3.1:-71145194 MS.gene047890:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3.1:+71146585 None:intergenic
GTAAATAAATATGCAGCAAG+TGG 0.517979 3.1:+71145506 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3.1:+71146946 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3.1:+71146156 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3.1:-71146558 MS.gene047890:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3.1:-71146893 MS.gene047890:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3.1:-71149144 MS.gene047890:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3.1:-71149118 MS.gene047890:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3.1:+71146578 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3.1:+71145239 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3.1:-71146184 MS.gene047890:CDS
GGGTGAAGAGTCACAGAAGA+AGG 0.530603 3.1:-71149157 MS.gene047890:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3.1:-71146896 MS.gene047890:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3.1:-71146578 MS.gene047890:CDS
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3.1:-71147003 MS.gene047890:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3.1:+71145168 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3.1:-71149071 MS.gene047890:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3.1:+71147014 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3.1:-71145895 MS.gene047890:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3.1:-71149058 MS.gene047890:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3.1:-71145154 MS.gene047890:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3.1:+71145694 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3.1:-71145455 MS.gene047890:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3.1:-71146854 MS.gene047890:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3.1:-71147424 MS.gene047890:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3.1:-71146899 MS.gene047890:CDS
CGTCGTTGGTGAAGGAGCTG+AGG 0.553449 3.1:-71149110 MS.gene047890:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3.1:-71145908 MS.gene047890:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3.1:+71148971 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3.1:+71145742 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3.1:-71145457 MS.gene047890:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3.1:-71145141 MS.gene047890:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3.1:+71146961 None:intergenic
GAAAATTTCATACCAATTTG+GGG 0.571184 3.1:+71146113 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3.1:-71147635 MS.gene047890:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3.1:+71145763 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3.1:-71145269 MS.gene047890:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3.1:+71145169 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3.1:-71145303 MS.gene047890:CDS
AAAGATGTTGGACGACGAGA+AGG 0.593143 3.1:-71145920 MS.gene047890:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3.1:-71147631 MS.gene047890:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3.1:+71145703 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3.1:-71146634 MS.gene047890:CDS
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3.1:-71147649 MS.gene047890:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3.1:-71146895 MS.gene047890:CDS
GTCGTTGGTGAAGGAGCTGA+GGG 0.610188 3.1:-71149109 MS.gene047890:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3.1:-71146216 MS.gene047890:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3.1:-71145536 MS.gene047890:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3.1:-71149136 MS.gene047890:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3.1:+71148961 None:intergenic
TCCATTGCTTCCCATCATCA+CGG 0.625141 3.1:-71145704 MS.gene047890:intron
GAACTTATTAGGGAGGTACA+TGG 0.626641 3.1:-71146923 MS.gene047890:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3.1:+71146114 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3.1:+71146942 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3.1:+71145122 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3.1:-71146894 MS.gene047890:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3.1:-71147449 MS.gene047890:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3.1:-71145737 MS.gene047890:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3.1:+71147434 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3.1:+71146870 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3.1:-71145456 MS.gene047890:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3.1:-71146930 MS.gene047890:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3.1:-71146624 MS.gene047890:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3.1:-71146621 MS.gene047890:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3.1:-71145270 MS.gene047890:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3.1:+71145938 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3.1:-71148956 MS.gene047890:intron
TGAAGAGTCACAGAAGAAGG+TGG 0.679895 3.1:-71149154 MS.gene047890:CDS
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3.1:-71146992 MS.gene047890:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3.1:+71148958 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3.1:+71145253 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3.1:+71145202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAACTTAAAATATTTTT+GGG - chr3.1:71146355-71146374 MS.gene047890:intron 10.0%
!!! TCATATATATATGATTTTTA+TGG - chr3.1:71145353-71145372 MS.gene047890:intron 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG - chr3.1:71145588-71145607 MS.gene047890:intron 10.0%
!! TAGATTATTAAAGAAACTAA+AGG + chr3.1:71147181-71147200 None:intergenic 15.0%
!!! GATTCAACTTAAAATATTTT+TGG - chr3.1:71146354-71146373 MS.gene047890:intron 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG + chr3.1:71147822-71147841 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG - chr3.1:71148030-71148049 MS.gene047890:intron 15.0%
!!! TATATCTAAATCAATTTGTT+AGG - chr3.1:71145854-71145873 MS.gene047890:intron 15.0%
!! AAAAATAAACTTTGATTGAC+TGG - chr3.1:71146027-71146046 MS.gene047890:CDS 20.0%
!! AAAATTCACAATACCAATAA+TGG + chr3.1:71147529-71147548 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG + chr3.1:71147009-71147028 None:intergenic 20.0%
!! AGTTCCTTTAATAATATTTC+AGG - chr3.1:71146753-71146772 MS.gene047890:intron 20.0%
!! TACAAATGTTACAAAATGTT+CGG + chr3.1:71146453-71146472 None:intergenic 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG + chr3.1:71148013-71148032 None:intergenic 20.0%
!! TTAGCCTGAAATATTATTAA+AGG + chr3.1:71146760-71146779 None:intergenic 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG - chr3.1:71146378-71146397 MS.gene047890:intron 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG + chr3.1:71148014-71148033 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG + chr3.1:71145638-71145657 None:intergenic 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG - chr3.1:71145993-71146012 MS.gene047890:CDS 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG + chr3.1:71145637-71145656 None:intergenic 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG - chr3.1:71145464-71145483 MS.gene047890:CDS 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG - chr3.1:71147482-71147501 MS.gene047890:CDS 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG - chr3.1:71147921-71147940 MS.gene047890:intron 20.0%
!!! GTAACTAAACAAACATATTT+TGG - chr3.1:71146470-71146489 MS.gene047890:intron 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG + chr3.1:71146431-71146450 None:intergenic 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG - chr3.1:71145992-71146011 MS.gene047890:CDS 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG - chr3.1:71147607-71147626 MS.gene047890:intron 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG - chr3.1:71145591-71145610 MS.gene047890:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG - chr3.1:71145493-71145512 MS.gene047890:CDS 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG + chr3.1:71146424-71146443 None:intergenic 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG - chr3.1:71148646-71148665 MS.gene047890:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG - chr3.1:71145976-71145995 MS.gene047890:CDS 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG - chr3.1:71148645-71148664 MS.gene047890:intron 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG - chr3.1:71147050-71147069 MS.gene047890:intron 20.0%
!!! TTTCACCTTCTTTTTTTTTA+CGG - chr3.1:71145655-71145674 MS.gene047890:intron 20.0%
! AAAATTTCATACCAATTTGG+GGG + chr3.1:71148149-71148168 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG + chr3.1:71145544-71145563 None:intergenic 25.0%
! AGCAACTTAAACATGAAATT+AGG + chr3.1:71145332-71145351 None:intergenic 25.0%
! ATAAGTAACATTGCATGATA+AGG + chr3.1:71148908-71148927 None:intergenic 25.0%
! ATAATACTTTCTTTCTTGCT+TGG - chr3.1:71148678-71148697 MS.gene047890:intron 25.0%
! ATGTTCCGTAAAAAAAAAGA+AGG + chr3.1:71145663-71145682 None:intergenic 25.0%
! CACTATATATCGAAAACTAT+TGG + chr3.1:71145907-71145926 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG + chr3.1:71148150-71148169 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG + chr3.1:71148284-71148303 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG + chr3.1:71148151-71148170 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG + chr3.1:71145573-71145592 None:intergenic 25.0%
! TAAGCCATTTGTATAACAAA+AGG + chr3.1:71147057-71147076 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG + chr3.1:71148012-71148031 None:intergenic 25.0%
! TATACTATTCTCAACTACAT+TGG - chr3.1:71146332-71146351 MS.gene047890:intron 25.0%
! TGACTGGAAAATAAAAAAGA+AGG + chr3.1:71147960-71147979 None:intergenic 25.0%
! TTAATAAGTCAATCCAAACA+TGG + chr3.1:71147761-71147780 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG - chr3.1:71147429-71147448 MS.gene047890:CDS 25.0%
!! GTATCCAATTTAAAACAATG+GGG - chr3.1:71148647-71148666 MS.gene047890:intron 25.0%
!! TTTTATATACTGCAATGCAA+TGG - chr3.1:71148441-71148460 MS.gene047890:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG - chr3.1:71147613-71147632 MS.gene047890:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG - chr3.1:71147735-71147754 MS.gene047890:intron 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG - chr3.1:71145817-71145836 MS.gene047890:intron 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG - chr3.1:71146063-71146082 MS.gene047890:intron 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG + chr3.1:71148118-71148137 None:intergenic 25.0%
AATACAACTAAGCAATTGAC+AGG - chr3.1:71146496-71146515 MS.gene047890:intron 30.0%
AATCACGTAAATACAAGTCA+CGG - chr3.1:71145720-71145739 MS.gene047890:CDS 30.0%
AATCCTAATAGCCATAACTT+TGG - chr3.1:71146106-71146125 MS.gene047890:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG - chr3.1:71145807-71145826 MS.gene047890:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG + chr3.1:71146397-71146416 None:intergenic 30.0%
CAAACCAATTTATTATGCCT+AGG + chr3.1:71145814-71145833 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG + chr3.1:71146284-71146303 None:intergenic 30.0%
CCTACTAAACTTGAATTAAG+AGG + chr3.1:71148421-71148440 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG - chr3.1:71145812-71145831 MS.gene047890:intron 30.0%
GATAAGGATATATGCATTCA+TGG + chr3.1:71148892-71148911 None:intergenic 30.0%
GGATTCAAATGTCAATTTAG+AGG - chr3.1:71147723-71147742 MS.gene047890:intron 30.0%
GGGAAAATTTCATACCAATT+TGG + chr3.1:71148152-71148171 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG + chr3.1:71148757-71148776 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG - chr3.1:71148197-71148216 MS.gene047890:intron 30.0%
TAACTCAAATACAACCAACA+AGG + chr3.1:71147148-71147167 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG - chr3.1:71147361-71147380 MS.gene047890:intron 30.0%
TACAAAGCAGAAATTGATGA+AGG - chr3.1:71149106-71149125 MS.gene047890:CDS 30.0%
TACAAATGACAACAAGTTCA+AGG - chr3.1:71148774-71148793 MS.gene047890:intron 30.0%
TATTGTGTCAACCAAAGTTA+TGG + chr3.1:71146120-71146139 None:intergenic 30.0%
TCATATTGCTTTCATGTGTA+AGG + chr3.1:71147868-71147887 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG + chr3.1:71147976-71147995 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG + chr3.1:71146280-71146299 None:intergenic 30.0%
TTTATTCTTACCGTGATGAT+GGG + chr3.1:71148569-71148588 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG + chr3.1:71148173-71148192 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG - chr3.1:71145510-71145529 MS.gene047890:CDS 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG - chr3.1:71148418-71148437 MS.gene047890:intron 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG - chr3.1:71146281-71146300 MS.gene047890:intron 30.0%
! GGGTAAAATAAACCTTTTCT+GGG + chr3.1:71146656-71146675 None:intergenic 30.0%
! GGTAAAATAAACCTTTTCTG+GGG + chr3.1:71146655-71146674 None:intergenic 30.0%
! TGGGACAAAATTTTGTATAC+AGG - chr3.1:71147425-71147444 MS.gene047890:CDS 30.0%
! TTTAGAACTCTTAACAACGA+GGG + chr3.1:71148172-71148191 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG + chr3.1:71148570-71148589 None:intergenic 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG - chr3.1:71146576-71146595 MS.gene047890:CDS 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG - chr3.1:71147621-71147640 MS.gene047890:CDS 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG - chr3.1:71147622-71147641 MS.gene047890:CDS 30.0%
AAGTAATTGTATCGTCGGAA+CGG + chr3.1:71145539-71145558 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG - chr3.1:71148251-71148270 MS.gene047890:intron 35.0%
ACATTTGAATCCACAACAGT+TGG + chr3.1:71147715-71147734 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG + chr3.1:71146291-71146310 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG - chr3.1:71145748-71145767 MS.gene047890:CDS 35.0%
ATAATGAGTGAGGAGATCTT+TGG - chr3.1:71148533-71148552 MS.gene047890:intron 35.0%
ATGGAGGAATAAAACTTCCT+AGG - chr3.1:71145794-71145813 MS.gene047890:intron 35.0%
CAACCAAAGTTATGGCTATT+AGG + chr3.1:71146112-71146131 None:intergenic 35.0%
CAATGCAGTAGTTTCATCAA+CGG + chr3.1:71147393-71147412 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG + chr3.1:71146398-71146417 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG + chr3.1:71146929-71146948 None:intergenic 35.0%
CTCATTATCAGAGAATCTTG+TGG + chr3.1:71148521-71148540 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG + chr3.1:71146868-71146887 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG - chr3.1:71146629-71146648 MS.gene047890:CDS 35.0%
GCTTTCCAATTCTGTCTTTA+AGG + chr3.1:71148246-71148265 None:intergenic 35.0%
GGATATATGCATTCATGGAA+AGG + chr3.1:71148887-71148906 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG + chr3.1:71146192-71146211 None:intergenic 35.0%
GTAAGACACGAAGTTATGAA+TGG - chr3.1:71145189-71145208 MS.gene047890:CDS 35.0%
GTTCTGTTCTGTTAAACAAC+TGG + chr3.1:71147126-71147145 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG + chr3.1:71148008-71148027 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG - chr3.1:71147365-71147384 MS.gene047890:intron 35.0%
TCTTGACACAAGCAAATTAC+AGG - chr3.1:71148465-71148484 MS.gene047890:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG - chr3.1:71148238-71148257 MS.gene047890:intron 35.0%
TGCAATTGGTATGCCATTAT+TGG - chr3.1:71147513-71147532 MS.gene047890:intron 35.0%
TGCATTGTTGCAACAAAAGT+GGG - chr3.1:71147406-71147425 MS.gene047890:intron 35.0%
TTAACAGAACAGAACCTTGT+TGG - chr3.1:71147131-71147150 MS.gene047890:intron 35.0%
TTTACTAGGTTACAGCTAGA+CGG - chr3.1:71148044-71148063 MS.gene047890:intron 35.0%
! AGATTCTCTGATAATGAGTG+AGG - chr3.1:71148523-71148542 MS.gene047890:intron 35.0%
! ATTGTTTTCAATGGCTATCC+AGG + chr3.1:71147813-71147832 None:intergenic 35.0%
! GGGGTAAAATAAACCTTTTC+TGG + chr3.1:71146657-71146676 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG + chr3.1:71146247-71146266 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG - chr3.1:71149025-71149044 MS.gene047890:CDS 35.0%
! TGGTTCATACTTTGCCATTT+GGG - chr3.1:71148955-71148974 MS.gene047890:intron 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG - chr3.1:71148803-71148822 MS.gene047890:intron 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG - chr3.1:71145959-71145978 MS.gene047890:CDS 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG - chr3.1:71148802-71148821 MS.gene047890:intron 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG - chr3.1:71149049-71149068 MS.gene047890:CDS 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG - chr3.1:71145775-71145794 MS.gene047890:CDS 35.0%
!! GTATTGATTAAGGCCATGTT+TGG - chr3.1:71147745-71147764 MS.gene047890:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG - chr3.1:71147459-71147478 MS.gene047890:CDS 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG + chr3.1:71149024-71149043 None:intergenic 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG + chr3.1:71148654-71148673 None:intergenic 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG + chr3.1:71147288-71147307 None:intergenic 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG - chr3.1:71147499-71147518 MS.gene047890:intron 35.0%
AAAAAGGCAGTTCTTTACCG+TGG - chr3.1:71149041-71149060 MS.gene047890:CDS 40.0%
AAAAGACTTTGCCCCCAAAT+TGG - chr3.1:71148135-71148154 MS.gene047890:intron 40.0%
AAAAGGAAAGAGGTTGGACT+AGG + chr3.1:71146274-71146293 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG - chr3.1:71145728-71145747 MS.gene047890:CDS 40.0%
AACGTAATCAGGAGAAATGC+AGG + chr3.1:71148107-71148126 None:intergenic 40.0%
AAGTTGACCTTCAGCATGAT+TGG - chr3.1:71146874-71146893 MS.gene047890:CDS 40.0%
ACAGCTAGACGGATAATTTC+AGG - chr3.1:71148055-71148074 MS.gene047890:intron 40.0%
ACCATCCAAGAAAAACAGAC+TGG + chr3.1:71147467-71147486 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG - chr3.1:71147702-71147721 MS.gene047890:intron 40.0%
AGTCAAACCAATCATGCTGA+AGG + chr3.1:71146884-71146903 None:intergenic 40.0%
ATCTATAAGAGTTGTGGAGG+GGG - chr3.1:71147367-71147386 MS.gene047890:intron 40.0%
ATGACTAACACTACACCAAG+TGG + chr3.1:71146829-71146848 None:intergenic 40.0%
CACAATGCGCGATAAATCAT+TGG + chr3.1:71148294-71148313 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG - chr3.1:71145747-71145766 MS.gene047890:CDS 40.0%
CATCTATAAGAGTTGTGGAG+GGG - chr3.1:71147366-71147385 MS.gene047890:intron 40.0%
CCTTCTCAGCTGAAGAAATT+GGG + chr3.1:71146677-71146696 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG - chr3.1:71146625-71146644 MS.gene047890:CDS 40.0%
CGTAGCAGTTGAGAAAAACT+CGG - chr3.1:71146308-71146327 MS.gene047890:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG - chr3.1:71147364-71147383 MS.gene047890:intron 40.0%
CTGCATTGTTGCAACAAAAG+TGG - chr3.1:71147405-71147424 MS.gene047890:intron 40.0%
CTTAAAAGACAGGGACAAGA+AGG - chr3.1:71145757-71145776 MS.gene047890:CDS 40.0%
CTTCTCAGCTGAAGAAATTG+GGG + chr3.1:71146676-71146695 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG - chr3.1:71148684-71148703 MS.gene047890:intron 40.0%
GAAATAGTACCTGAACCACT+TGG - chr3.1:71146811-71146830 MS.gene047890:intron 40.0%
GACGGATAATTTCAGGAAAG+TGG - chr3.1:71148062-71148081 MS.gene047890:intron 40.0%
GCTAAGACTTAGAACCTGAT+TGG + chr3.1:71147938-71147957 None:intergenic 40.0%
GGCGCTAATTTATTCAATGG+AGG - chr3.1:71145778-71145797 MS.gene047890:intron 40.0%
GGTACTATTTCAGCTGAAGA+AGG + chr3.1:71146802-71146821 None:intergenic 40.0%
GGTTGTTTATGGAGGTGAAA+AGG - chr3.1:71148373-71148392 MS.gene047890:intron 40.0%
GTACATCAGTGAAGAGTAGA+AGG + chr3.1:71146562-71146581 None:intergenic 40.0%
GTGGTTCATACTTTGCCATT+TGG - chr3.1:71148954-71148973 MS.gene047890:intron 40.0%
TAGTGTTAGTCATCTCTGCT+TGG - chr3.1:71146836-71146855 MS.gene047890:CDS 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG + chr3.1:71146678-71146697 None:intergenic 40.0%
TCGTAGACAACAGTTTCAAG+CGG + chr3.1:71145305-71145324 None:intergenic 40.0%
TGAAAATGCTATGCAGGCAT+TGG + chr3.1:71146186-71146205 None:intergenic 40.0%
TGACACAAGCAAATTACAGG+AGG - chr3.1:71148468-71148487 MS.gene047890:intron 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG + chr3.1:71146310-71146329 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG - chr3.1:71147337-71147356 MS.gene047890:intron 40.0%
! GGAGCGTCTAATACAATAGT+GGG + chr3.1:71148500-71148519 None:intergenic 40.0%
! GGTTCATACTTTGCCATTTG+GGG - chr3.1:71148956-71148975 MS.gene047890:intron 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG - chr3.1:71147792-71147811 MS.gene047890:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG - chr3.1:71148957-71148976 MS.gene047890:CDS 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG + chr3.1:71146255-71146274 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG + chr3.1:71148501-71148520 None:intergenic 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG - chr3.1:71148804-71148823 MS.gene047890:intron 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG - chr3.1:71149156-71149175 MS.gene047890:CDS 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG - chr3.1:71147463-71147482 MS.gene047890:CDS 40.0%
!! GAAGATGGTTGATGAACAAC+AGG - chr3.1:71145238-71145257 MS.gene047890:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG - chr3.1:71145223-71145242 MS.gene047890:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG - chr3.1:71149050-71149069 MS.gene047890:CDS 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG - chr3.1:71148362-71148381 MS.gene047890:intron 40.0%
!! TTATGAATGGAGAGTATCGC+AGG - chr3.1:71145202-71145221 MS.gene047890:CDS 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG + chr3.1:71145749-71145768 None:intergenic 40.0%
AAAAGTGGGACGGATAGTGA+TGG - chr3.1:71147636-71147655 MS.gene047890:CDS 45.0%
AAAGATGTTGGACGACGAGA+AGG - chr3.1:71148340-71148359 MS.gene047890:intron 45.0%
AACAACACCAGTAACATCGC+CGG + chr3.1:71149141-71149160 None:intergenic 45.0%
AACACTACACCAAGTGGTTC+AGG + chr3.1:71146823-71146842 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG + chr3.1:71147249-71147268 None:intergenic 45.0%
AGTTACTCGCGAAATTCGCA+TGG - chr3.1:71146206-71146225 MS.gene047890:CDS 45.0%
ATGCATCACCCGTAAAACCA+CGG + chr3.1:71149061-71149080 None:intergenic 45.0%
CACTGCTGGCGAACTTATTA+GGG - chr3.1:71147327-71147346 MS.gene047890:intron 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG - chr3.1:71145116-71145135 MS.gene047890:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG - chr3.1:71146674-71146693 MS.gene047890:intron 45.0%
CGTCAAAGGAGAATTTCCCA+TGG + chr3.1:71149010-71149029 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG - chr3.1:71145304-71145323 MS.gene047890:CDS 45.0%
TAGACAACAGTTTCAAGCGG+TGG + chr3.1:71145302-71145321 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG + chr3.1:71147250-71147269 None:intergenic 45.0%
TATGAACCACAAGCTGCACA+AGG + chr3.1:71148944-71148963 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG - chr3.1:71147326-71147345 MS.gene047890:intron 45.0%
TCCATTGCTTCCCATCATCA+CGG - chr3.1:71148556-71148575 MS.gene047890:intron 45.0%
TCTGGCAAGGTTGTTTATGG+AGG - chr3.1:71148365-71148384 MS.gene047890:intron 45.0%
TCTTTACCAAGCGAGCAAAG+TGG + chr3.1:71148325-71148344 None:intergenic 45.0%
TGAAGAGTCACAGAAGAAGG+TGG - chr3.1:71145106-71145125 MS.gene047890:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG - chr3.1:71146156-71146175 MS.gene047890:CDS 45.0%
TGCTCGCTTGGTAAAGATGT+TGG - chr3.1:71148328-71148347 MS.gene047890:intron 45.0%
TTCTAACCACTTTGCTCGCT+TGG - chr3.1:71148316-71148335 MS.gene047890:intron 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG + chr3.1:71145292-71145311 None:intergenic 45.0%
! AGCTTCGATTTGATCAACGC+AGG - chr3.1:71148724-71148743 MS.gene047890:intron 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG - chr3.1:71145167-71145186 MS.gene047890:CDS 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG - chr3.1:71148805-71148824 MS.gene047890:intron 45.0%
! TTACGGGTGATGCATCGATA+AGG - chr3.1:71149066-71149085 MS.gene047890:CDS 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG - chr3.1:71147626-71147645 MS.gene047890:CDS 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG + chr3.1:71148235-71148254 None:intergenic 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG - chr3.1:71148076-71148095 MS.gene047890:intron 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG - chr3.1:71149152-71149171 MS.gene047890:CDS 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG + chr3.1:71147279-71147298 None:intergenic 45.0%
!!! AAATTATAATTCATTTTTTT+TGG - chr3.1:71145387-71145406 MS.gene047890:intron 5.0%
ACAATGGATGGCCCCAGAAA+AGG - chr3.1:71146641-71146660 MS.gene047890:intron 50.0%
ACACCTTACACCAGTCGTTC+TGG - chr3.1:71147672-71147691 MS.gene047890:intron 50.0%
AGTGGAATGGGTGCATACCA+TGG - chr3.1:71148990-71149009 MS.gene047890:CDS 50.0%
CCACAAGCTGCACAAGGAAA+AGG + chr3.1:71148938-71148957 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG - chr3.1:71146611-71146630 MS.gene047890:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG - chr3.1:71147242-71147261 MS.gene047890:intron 50.0%
CTTGGAACAGGTGAACAAGC+TGG - chr3.1:71148696-71148715 MS.gene047890:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG + chr3.1:71147302-71147321 None:intergenic 50.0%
GCTGCTATAGCTCCAACAAC+TGG + chr3.1:71147257-71147276 None:intergenic 50.0%
GGCATCAACCTGGAAATGAG+AGG + chr3.1:71148225-71148244 None:intergenic 50.0%
GGGTGAAGAGTCACAGAAGA+AGG - chr3.1:71145103-71145122 MS.gene047890:CDS 50.0%
GTGGAATGGGTGCATACCAT+GGG - chr3.1:71148991-71149010 MS.gene047890:CDS 50.0%
GTTGTTGGAGCTATAGCAGC+CGG - chr3.1:71147257-71147276 MS.gene047890:intron 50.0%
TGCTGGCGAACTTATTAGGG+AGG - chr3.1:71147330-71147349 MS.gene047890:intron 50.0%
TGGCTATCCAGGAGAACTGA+AGG + chr3.1:71147802-71147821 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG - chr3.1:71148347-71148366 MS.gene047890:intron 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG - chr3.1:71148963-71148982 MS.gene047890:CDS 50.0%
! AGGAAAGAGGTTGGACTAGG+CGG + chr3.1:71146271-71146290 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG - chr3.1:71148935-71148954 MS.gene047890:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG - chr3.1:71149119-71149138 MS.gene047890:CDS 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG + chr3.1:71148560-71148579 None:intergenic 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG - chr3.1:71148978-71148997 MS.gene047890:CDS 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG - chr3.1:71148214-71148233 MS.gene047890:intron 50.0%
AGTGGGACGGATAGTGATGG+CGG - chr3.1:71147639-71147658 MS.gene047890:CDS 55.0%
CTGTCACCAACTCCCCCAAA+TGG + chr3.1:71148972-71148991 None:intergenic 55.0%
GCTCCAGAACGACTGGTGTA+AGG + chr3.1:71147678-71147697 None:intergenic 55.0%
GGTGGTGTTTGACGGAGAAG+CGG - chr3.1:71145124-71145143 MS.gene047890:CDS 55.0%
! GTCGTTGGTGAAGGAGCTGA+GGG - chr3.1:71145151-71145170 MS.gene047890:CDS 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG - chr3.1:71147679-71147698 MS.gene047890:intron 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG - chr3.1:71148352-71148371 MS.gene047890:intron 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG - chr3.1:71148977-71148996 MS.gene047890:CDS 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG - chr3.1:71148972-71148991 MS.gene047890:CDS 55.0%
CCTCCAAGCTCCAGAACGAC+TGG + chr3.1:71147685-71147704 None:intergenic 60.0%
CTAGTCGCCGGCGATGTTAC+TGG - chr3.1:71149131-71149150 MS.gene047890:CDS 60.0%
GTTCGCCAGCAGTGAAGACG+AGG + chr3.1:71147321-71147340 None:intergenic 60.0%
TATAGCAGCCGGAAACGCCG+TGG - chr3.1:71147268-71147287 MS.gene047890:intron 60.0%
TCCAGCCTCGTCTTCACTGC+TGG - chr3.1:71147313-71147332 MS.gene047890:intron 60.0%
! CGTCGTTGGTGAAGGAGCTG+AGG - chr3.1:71145150-71145169 MS.gene047890:CDS 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG - chr3.1:71147682-71147701 MS.gene047890:intron 60.0%
GCCAGCAGTGAAGACGAGGC+TGG + chr3.1:71147317-71147336 None:intergenic 65.0%
! AGCGGCGTCGTCGTTGGTGA+AGG - chr3.1:71145142-71145161 MS.gene047890:CDS 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG - chr3.1:71145136-71145155 MS.gene047890:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 71145098 71149184 71145098 ID=MS.gene047890
chr3.1 mRNA 71145098 71149184 71145098 ID=MS.gene047890.t1;Parent=MS.gene047890
chr3.1 exon 71148957 71149184 71148957 ID=MS.gene047890.t1.exon1;Parent=MS.gene047890.t1
chr3.1 CDS 71148957 71149184 71148957 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71147620 71147688 71147620 ID=MS.gene047890.t1.exon2;Parent=MS.gene047890.t1
chr3.1 CDS 71147620 71147688 71147620 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71147411 71147507 71147411 ID=MS.gene047890.t1.exon3;Parent=MS.gene047890.t1
chr3.1 CDS 71147411 71147507 71147411 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71146836 71147042 71146836 ID=MS.gene047890.t1.exon4;Parent=MS.gene047890.t1
chr3.1 CDS 71146836 71147042 71146836 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71146538 71146653 71146538 ID=MS.gene047890.t1.exon5;Parent=MS.gene047890.t1
chr3.1 CDS 71146538 71146653 71146538 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71146126 71146230 71146126 ID=MS.gene047890.t1.exon6;Parent=MS.gene047890.t1
chr3.1 CDS 71146126 71146230 71146126 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71145874 71146046 71145874 ID=MS.gene047890.t1.exon7;Parent=MS.gene047890.t1
chr3.1 CDS 71145874 71146046 71145874 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71145705 71145795 71145705 ID=MS.gene047890.t1.exon8;Parent=MS.gene047890.t1
chr3.1 CDS 71145705 71145795 71145705 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71145427 71145576 71145427 ID=MS.gene047890.t1.exon9;Parent=MS.gene047890.t1
chr3.1 CDS 71145427 71145576 71145427 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
chr3.1 exon 71145098 71145331 71145098 ID=MS.gene047890.t1.exon10;Parent=MS.gene047890.t1
chr3.1 CDS 71145098 71145331 71145098 ID=cds.MS.gene047890.t1;Parent=MS.gene047890.t1
Gene Sequence

>MS.gene047890

ATGTCGGGTGAAGAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGGTACCTAATTTCATGTTTAAGTTGCTTTCATATATATATGATTTTTATGGTCTCTCTTTTTAAATTATAATTCATTTTTTTTGGTACGTGCAATTGAAATCGATAGAAGAGCTAGAGAATCAAGTTTTTTGTTATAACATAAACATCATAAGTTTTCAAGGCTGAGATATTCTTGAGATTTTTCATTTGGAGTCACTATTATGATGGCAACCGTTCCGACGATACAATTACTTTGATTTTTTTTCCTTGTATGACGTCAATATTTTATGTTTTCTTTAATAAAGGAGGAAACATGCTTTTCACTTTTTCCCTTCAAAAAGAAAAATGCTTTTCACCTTCTTTTTTTTTACGGAACATGCTTTTCACTTGAACGATCACATTAAAGTTACTTCACAATCACGTAAATACAAGTCACGGAAACCAGGATGCTTCTTAAAAGACAGGGACAAGAAGGCGCTAATTTATTCAATGGAGGAATAAAACTTCCTAGGCATAATAAATTGGTTTGGTTTGGTTTTTATGAGAAAATATATCTAAATCAATTTGTTAGGAAATTTGAAAGTTAGTAGATAATTTGACCAATAGTTTTCGATATATAGTGATACTCTTTCTTTCAAATGATCGATCAAAGAATTGTGAGAACTAAAGTGTTCTGGAAAATATAAGTAAAAGGTGTATGTAAAATAAGGGTAAATTACAAGAAAAATAAACTTTGATTGACTGGTGTGTATGTAAAATGTTTTTTACAATGAGTAGTTGGAGATAAAAATGTTAAAGCTAAATCCTAATAGCCATAACTTTGGTTGACACAATATGCGCTCAGCTCAACTTGCGTATTAGTGTGAGACTGTGGCATGCCAATGCCTGCATAGCATTTTCAAGTTACTCGCGAAATTCGCATGGTCATGTGTGAGTGTGCCTCTTGACCGTGCTTAAAATTAGCCGCCTAGTCCAACCTCTTTCCTTTTTACTAAATGGACTCCGTAGCAGTTGAGAAAAACTCGGTTATACTATTCTCAACTACATTGGATTCAACTTAAAATATTTTTGGGTTTAAAAATTTAGTATCCCTTGGTTTCATTTCACTCAATGACACCGCTTTCCATAAATTCAAAATAGAGTAACCGAACATTTTGTAACATTTGTAACTAAACAAACATATTTTGGATGAATACAACTAAGCAATTGACAGGTCAATGTTGCAATCAATACAACTATAATAAAGATAATTTTCCTTCTACTCTTCACTGATGTACTTTGTTTTGCAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGTTTATTTTACCCCAATTTCTTCAGCTGAGAAGGACATTTTTCATTTATATTTCTTATATATAGTTTATTTGAATATTTTTATAACAAAAAGTTCCTTTAATAATATTTCAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTGTAAGTTGACCTTCAGCATGATTGGTTTGACTTATTTGAGTTTATTTACTTACACCAACATTCTTGAGACTGTTTAGTAGAACTTATATTGAAACAACTTATATGCAAGTCTACAAGCTGTTTTTGACTTATTTCCATAAATTTTTCACGATATCTTATAAAAACAGTTTGACTTTATTTTACCTTTTGTTATACAAATGGCTTATACATAGACACTTATATGATAAATGTGTATGCTATAAACACTTCATCCAGTTGTTTAACAGAACAGAACCTTGTTGGTTGTATTTGAGTTAATATTTTGAGCCTTTAGTTTCTTTAATAATCTATGAAGACTATAATATCACTCTCTCTGTCTGTCTTTTCAGTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTTGGTCTTGTTTATCACCAGTCTGTTTTTCTTGGATGGTTATGAATTGTTATTTTGGTTTTGTCGTGCAATTGGTATGCCATTATTGGTATTGTGAATTTTGAAATCTCATCTCAGATAATCAAATAAATACATCATTTGAACAAAAGATTTCATAGCATAAGTAATTACTTGATTTTCAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTATTGATTAAGGCCATGTTTGGATTGACTTATTAAGTTGTTATCAAGTTATTTCCTTCAGTTCTCCTGGATAGCCATTGAAAACAATTTAACTTTATTTTATCTTTTATTATAAAAAAACCTTACACATGAAAGCAATATGACAAATCGACAAGTGTTTATGTTATAAGCGTTTAATTAAATTTTTCATCCAATCAGGTTCTAAGTCTTAGCCTTCTTTTTTATTTTCCAGTCAGTAACTAGTTATATCACTTTGATCTCCTTCCCCTTAACTCATTATTGACTTAAATTAATTTGTGTTTACTAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTATGAAATTTTCCCTCGTTGTTAAGAGTTCTAAATATCTGTCTTTGTGTATCTAATGTTTGGTGCCTCTCATTTCCAGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGTAAGCTCTCCTCTTAATTCAAGTTTAGTAGGTTTTATATACTGCAATGCAATGGATCTTGACACAAGCAAATTACAGGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTAAGAATAAAAGACACAAAGAACTCTTTGAAAAGTACTCAAATATTCATCGATAAGCTTCATTAGCTTGTATCCAATTTAAAACAATGGGGCATCAATTATAATACTTTCTTTCTTGCTTGGAACAGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATGTAATAGTTTGTTTTTTATTTTCTAAAACCTTTCCATGAATGCATATATCCTTATCATGCAATGTTACTTATATCTTTTCCTTTTCCTTGTGCAGCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA
Protein sequence

>MS.gene047890.t1

MSGEESQKKVVFDGEAASSLVKELRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS