AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047892

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047892.t1 MTR_3g088150 96.939 490 14 1 1 489 1 490 0.0 978
MS.gene047892.t1 MTR_1g029840 78.351 485 105 0 5 489 4 488 0.0 811
MS.gene047892.t1 MTR_1g029840 77.755 481 107 0 9 489 8 488 0.0 800
MS.gene047892.t1 MTR_8g094600 66.804 485 161 0 5 489 57 541 0.0 705
MS.gene047892.t1 MTR_8g076480 47.335 469 247 0 14 482 6 474 5.84e-165 475
MS.gene047892.t1 MTR_2g097950 46.764 479 252 1 12 487 15 493 5.48e-159 461
MS.gene047892.t1 MTR_4g065040 50.881 454 220 1 21 471 9 462 8.40e-146 427
MS.gene047892.t1 MTR_2g097950 44.328 476 233 2 12 487 15 458 1.20e-143 420
MS.gene047892.t1 MTR_1222s0010 36.387 382 231 5 18 395 6 379 6.58e-78 258
MS.gene047892.t1 MTR_1314s0010 35.799 338 207 4 117 446 1 336 6.37e-71 229
MS.gene047892.t1 MTR_3g078550 29.954 434 285 9 26 446 28 455 4.32e-40 150
MS.gene047892.t1 MTR_3g078550 29.954 434 285 9 26 446 58 485 8.66e-40 150
MS.gene047892.t1 MTR_4g106510 29.017 417 282 9 39 446 74 485 3.07e-39 149
MS.gene047892.t1 MTR_2g034160 24.777 448 307 8 35 466 106 539 5.22e-39 149
MS.gene047892.t1 MTR_3g078490 29.263 434 288 10 26 446 88 515 1.13e-37 145
MS.gene047892.t1 MTR_2g067660 27.874 348 242 8 113 454 178 522 7.27e-33 131
MS.gene047892.t1 MTR_8g064170 26.773 437 302 11 21 447 104 532 5.61e-30 123
MS.gene047892.t1 MTR_4g107040 26.770 452 299 13 13 447 99 535 6.73e-29 120
MS.gene047892.t1 MTR_8g083530 28.070 342 230 9 116 447 159 494 2.30e-27 115
MS.gene047892.t1 MTR_3g078170 27.212 452 297 14 13 447 97 533 4.10e-27 114
MS.gene047892.t1 MTR_4g131180 26.244 442 301 11 22 447 53 485 3.26e-26 111
MS.gene047892.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047892.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene047892.t1 MTR_6g086340 27.515 338 235 8 116 446 156 490 8.09e-24 104
MS.gene047892.t1 MTR_1g014320 25.328 458 315 12 6 447 39 485 9.41e-24 104
MS.gene047892.t1 MTR_4g131180 26.119 402 273 10 22 407 53 446 7.77e-23 101
MS.gene047892.t1 MTR_8g064170 24.773 440 287 13 15 447 98 500 8.36e-22 98.6
MS.gene047892.t1 MTR_3g078490 29.310 290 196 6 26 308 58 345 4.82e-19 89.0
MS.gene047892.t1 MTR_2g009750 28.710 310 195 11 114 407 147 446 2.08e-18 88.2
MS.gene047892.t1 MTR_2g009750 28.710 310 195 11 114 407 146 445 2.62e-18 88.2
MS.gene047892.t1 MTR_2g009750 28.710 310 196 11 114 407 147 447 3.01e-18 87.8
MS.gene047892.t1 MTR_4g093170 27.036 307 205 8 114 407 174 474 3.43e-18 87.8
MS.gene047892.t1 MTR_3g078170 27.049 366 237 13 13 361 97 449 6.85e-18 86.3
MS.gene047892.t1 MTR_8g083520 26.163 344 201 10 116 447 150 452 3.40e-17 84.3
MS.gene047892.t1 MTR_8g083520 26.163 344 201 10 116 447 70 372 3.84e-17 83.6
MS.gene047892.t1 MTR_4g020710 48.684 76 39 0 294 369 8 83 6.14e-17 77.8
MS.gene047892.t1 MTR_4g020720 39.200 125 67 4 184 302 116 237 3.07e-16 79.3
MS.gene047892.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.55e-14 75.9
MS.gene047892.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.75e-14 75.9
MS.gene047892.t1 MTR_8g083530 35.762 151 88 5 116 260 159 306 1.91e-13 72.0
MS.gene047892.t1 MTR_1399s0020 27.830 212 143 5 253 462 145 348 3.19e-13 71.2
MS.gene047892.t1 MTR_2g042330 25.685 292 194 12 117 392 155 439 4.67e-13 71.6
MS.gene047892.t1 MTR_1690s0010 27.801 241 153 10 88 313 111 345 5.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047892.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047892.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene047892.t1 AT4G34240 64.854 478 168 0 12 489 70 547 0.0 649
MS.gene047892.t1 AT4G34240 64.854 478 168 0 12 489 55 532 0.0 648
MS.gene047892.t1 AT1G44170 70.560 411 121 0 77 487 9 419 0.0 634
MS.gene047892.t1 AT4G34240 67.574 404 131 0 86 489 2 405 0.0 569
MS.gene047892.t1 AT4G36250 47.826 460 237 1 15 471 6 465 4.95e-163 470
MS.gene047892.t1 AT4G34240 66.978 321 106 0 12 332 70 390 3.69e-151 436
MS.gene047892.t1 AT3G66658 27.146 431 296 6 35 451 106 532 9.44e-44 162
MS.gene047892.t1 AT3G66658 27.361 413 282 6 35 433 106 514 1.98e-43 162
MS.gene047892.t1 AT1G74920 28.810 420 284 10 39 448 69 483 9.82e-42 155
MS.gene047892.t1 AT1G74920 28.810 420 284 10 39 448 74 488 1.17e-41 155
MS.gene047892.t1 AT3G48170 27.338 417 289 9 39 446 74 485 1.40e-36 141
MS.gene047892.t1 AT1G23800 27.455 448 301 13 13 447 89 525 1.08e-33 134
MS.gene047892.t1 AT1G79440 29.912 341 228 10 113 446 184 520 1.14e-33 134
MS.gene047892.t1 AT3G48000 26.549 452 300 14 13 447 93 529 7.22e-29 120
MS.gene047892.t1 AT3G24503 27.729 339 235 7 116 447 157 492 2.68e-27 115
MS.gene047892.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047892.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047892.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene047892.t1 AT2G24270 28.707 317 217 7 117 430 198 508 1.00e-24 107
MS.gene047892.t1 AT2G14170 27.378 347 228 12 116 446 248 586 5.74e-18 87.4
MS.gene047892.t1 AT2G14170 27.378 347 228 12 116 446 139 477 6.43e-18 86.7
MS.gene047892.t1 AT1G23800 30.078 256 155 9 13 252 89 336 2.83e-17 84.3
MS.gene047892.t1 AT2G14170 27.273 308 203 10 114 407 246 546 1.09e-16 83.2
MS.gene047892.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2
MS.gene047892.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3.1:-71129834 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3.1:-71129740 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3.1:+71129953 MS.gene047892:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3.1:+71128917 MS.gene047892:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3.1:-71129739 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3.1:+71129842 MS.gene047892:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3.1:+71129938 MS.gene047892:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3.1:+71130546 MS.gene047892:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3.1:+71130545 MS.gene047892:CDS
TTTGTTGTTATAACGTAATC+AGG 0.304335 3.1:-71129706 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3.1:+71128918 MS.gene047892:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3.1:-71129872 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3.1:+71129646 MS.gene047892:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3.1:+71129263 MS.gene047892:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3.1:+71130722 MS.gene047892:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3.1:+71129314 MS.gene047892:CDS
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3.1:+71126756 MS.gene047892:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3.1:+71129907 MS.gene047892:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3.1:+71129829 MS.gene047892:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3.1:-71128411 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3.1:+71128904 MS.gene047892:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3.1:-71130686 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3.1:+71130569 MS.gene047892:CDS
GAAGATGGTTGATGAACAAC+AGG 0.411988 3.1:+71126827 MS.gene047892:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3.1:+71130568 MS.gene047892:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3.1:+71128833 MS.gene047892:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3.1:-71129882 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3.1:+71130365 MS.gene047892:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3.1:-71128845 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3.1:+71129270 MS.gene047892:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3.1:+71130124 MS.gene047892:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3.1:+71129919 MS.gene047892:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3.1:+71126672 None:intergenic
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3.1:+71130393 MS.gene047892:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3.1:-71128390 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3.1:+71128232 MS.gene047892:CDS
ACATTTGAATCCACAACAGT+TGG 0.479478 3.1:-71129303 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3.1:+71129964 MS.gene047892:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3.1:+71128996 MS.gene047892:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3.1:+71130287 MS.gene047892:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3.1:+71126725 MS.gene047892:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3.1:-71128838 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3.1:-71130089 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3.1:+71130547 MS.gene047892:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3.1:+71129653 MS.gene047892:CDS
TTACGGGTGATGCATCGATA+AGG 0.514070 3.1:+71130657 MS.gene047892:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3.1:-71129266 None:intergenic
GTAAATAAATATGCAGCAAG+TGG 0.517979 3.1:-71130345 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3.1:-71128905 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3.1:-71129695 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3.1:+71129293 MS.gene047892:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3.1:+71128958 MS.gene047892:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3.1:+71126705 MS.gene047892:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3.1:+71126731 MS.gene047892:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3.1:-71129273 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3.1:-71130612 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3.1:+71129667 MS.gene047892:CDS
GGGTGAAGAGTCACAGAAGA+AGG 0.530603 3.1:+71126692 MS.gene047892:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3.1:+71128955 MS.gene047892:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3.1:+71129273 MS.gene047892:CDS
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3.1:+71128848 MS.gene047892:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3.1:-71130683 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3.1:+71126778 MS.gene047892:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3.1:-71128837 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3.1:+71129956 MS.gene047892:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3.1:+71126791 MS.gene047892:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3.1:+71130697 MS.gene047892:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3.1:-71130157 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3.1:+71130396 MS.gene047892:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3.1:+71128997 MS.gene047892:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3.1:+71128427 MS.gene047892:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3.1:+71128952 MS.gene047892:CDS
CGTCGTTGGTGAAGGAGCTG+AGG 0.553449 3.1:+71126739 MS.gene047892:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3.1:+71129943 MS.gene047892:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3.1:-71126878 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3.1:-71130109 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3.1:+71130394 MS.gene047892:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3.1:+71130710 MS.gene047892:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3.1:-71128890 None:intergenic
GAAAATTTCATACCAATTTG+GGG 0.571184 3.1:-71129738 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3.1:+71128216 MS.gene047892:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3.1:-71130088 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3.1:+71130582 MS.gene047892:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3.1:-71130682 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3.1:+71130548 MS.gene047892:CDS
AAAGATGTTGGACGACGAGA+AGG 0.593143 3.1:+71129931 MS.gene047892:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3.1:+71128220 MS.gene047892:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3.1:-71130148 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3.1:+71129217 MS.gene047892:intron
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3.1:+71128202 MS.gene047892:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3.1:+71128956 MS.gene047892:CDS
GTCGTTGGTGAAGGAGCTGA+GGG 0.610188 3.1:+71126740 MS.gene047892:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3.1:+71129635 MS.gene047892:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3.1:+71130315 MS.gene047892:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3.1:+71126713 MS.gene047892:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3.1:-71126888 None:intergenic
TCCATTGCTTCCCATCATCA+CGG 0.625141 3.1:+71130147 MS.gene047892:CDS
GAACTTATTAGGGAGGTACA+TGG 0.626641 3.1:+71128928 MS.gene047892:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3.1:-71129737 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3.1:-71128909 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3.1:-71130729 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3.1:+71128957 MS.gene047892:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3.1:+71128402 MS.gene047892:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3.1:+71130114 MS.gene047892:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3.1:-71128417 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3.1:-71128981 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3.1:+71130395 MS.gene047892:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3.1:+71128921 MS.gene047892:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3.1:+71129227 MS.gene047892:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3.1:+71129230 MS.gene047892:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3.1:+71130581 MS.gene047892:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3.1:-71129913 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3.1:+71126893 MS.gene047892:CDS
TGAAGAGTCACAGAAGAAGG+TGG 0.679895 3.1:+71126695 MS.gene047892:CDS
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3.1:+71128859 MS.gene047892:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3.1:-71126891 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3.1:-71130598 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3.1:-71130649 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAACTTAAAATATTTTT+GGG + chr3.1:71127946-71127965 MS.gene047892:intron 10.0%
!!! TCATATATATATGATTTTTA+TGG + chr3.1:71126942-71126961 MS.gene047892:intron 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG + chr3.1:71127178-71127197 MS.gene047892:intron 10.0%
!! TAGATTATTAAAGAAACTAA+AGG - chr3.1:71128772-71128791 None:intergenic 15.0%
!!! GATTCAACTTAAAATATTTT+TGG + chr3.1:71127945-71127964 MS.gene047892:intron 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG - chr3.1:71129413-71129432 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG + chr3.1:71129621-71129640 MS.gene047892:intron 15.0%
!!! TATATCTAAATCAATTTGTT+AGG + chr3.1:71127445-71127464 MS.gene047892:intron 15.0%
!! AAAAATAAACTTTGATTGAC+TGG + chr3.1:71127618-71127637 MS.gene047892:intron 20.0%
!! AAAATTCACAATACCAATAA+TGG - chr3.1:71129120-71129139 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG - chr3.1:71128600-71128619 None:intergenic 20.0%
!! AGTTCCTTTAATAATATTTC+AGG + chr3.1:71128344-71128363 MS.gene047892:intron 20.0%
!! TACAAATGTTACAAAATGTT+CGG - chr3.1:71128044-71128063 None:intergenic 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG - chr3.1:71129604-71129623 None:intergenic 20.0%
!! TTAGCCTGAAATATTATTAA+AGG - chr3.1:71128351-71128370 None:intergenic 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG + chr3.1:71127969-71127988 MS.gene047892:intron 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG - chr3.1:71129605-71129624 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG - chr3.1:71127228-71127247 None:intergenic 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG + chr3.1:71127584-71127603 MS.gene047892:intron 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG - chr3.1:71127227-71127246 None:intergenic 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG + chr3.1:71127054-71127073 MS.gene047892:intron 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG + chr3.1:71129073-71129092 MS.gene047892:intron 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG + chr3.1:71129512-71129531 MS.gene047892:intron 20.0%
!!! GTAACTAAACAAACATATTT+TGG + chr3.1:71128061-71128080 MS.gene047892:intron 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG - chr3.1:71128022-71128041 None:intergenic 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG + chr3.1:71127583-71127602 MS.gene047892:intron 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG + chr3.1:71129198-71129217 MS.gene047892:intron 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG + chr3.1:71127181-71127200 MS.gene047892:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG + chr3.1:71127083-71127102 MS.gene047892:intron 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG - chr3.1:71128015-71128034 None:intergenic 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG + chr3.1:71130237-71130256 MS.gene047892:intron 20.0%
!!! TTCACCTTCTTTTTTTTTTA+CGG + chr3.1:71127246-71127265 MS.gene047892:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG + chr3.1:71127567-71127586 MS.gene047892:intron 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG + chr3.1:71130236-71130255 MS.gene047892:intron 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG + chr3.1:71128641-71128660 MS.gene047892:intron 20.0%
! AAAATTTCATACCAATTTGG+GGG - chr3.1:71129740-71129759 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG - chr3.1:71127134-71127153 None:intergenic 25.0%
! AGCAACTTAAACATGAAATT+AGG - chr3.1:71126921-71126940 None:intergenic 25.0%
! ATAAGTAACATTGCATGATA+AGG - chr3.1:71130499-71130518 None:intergenic 25.0%
! ATAATACTTTCTTTCTTGCT+TGG + chr3.1:71130269-71130288 MS.gene047892:intron 25.0%
! CACTATATATCGAAAACTAT+TGG - chr3.1:71127498-71127517 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG - chr3.1:71129741-71129760 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG - chr3.1:71129875-71129894 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG - chr3.1:71129742-71129761 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG - chr3.1:71127163-71127182 None:intergenic 25.0%
! TAAGCCATTTGTATAACAAA+AGG - chr3.1:71128648-71128667 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG - chr3.1:71129603-71129622 None:intergenic 25.0%
! TATACTATTCTCAACTACAT+TGG + chr3.1:71127923-71127942 MS.gene047892:intron 25.0%
! TGACTGGAAAATAAAAAAGA+AGG - chr3.1:71129551-71129570 None:intergenic 25.0%
! TGTTCCGTAAAAAAAAAAGA+AGG - chr3.1:71127253-71127272 None:intergenic 25.0%
! TTAATAAGTCAATCCAAACA+TGG - chr3.1:71129352-71129371 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG + chr3.1:71129020-71129039 MS.gene047892:intron 25.0%
!! GTATCCAATTTAAAACAATG+GGG + chr3.1:71130238-71130257 MS.gene047892:intron 25.0%
!! TTTTATATACTGCAATGCAA+TGG + chr3.1:71130032-71130051 MS.gene047892:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG + chr3.1:71129204-71129223 MS.gene047892:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG + chr3.1:71129326-71129345 MS.gene047892:intron 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG + chr3.1:71127408-71127427 MS.gene047892:intron 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG + chr3.1:71127654-71127673 MS.gene047892:intron 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG - chr3.1:71129709-71129728 None:intergenic 25.0%
AATACAACTAAGCAATTGAC+AGG + chr3.1:71128087-71128106 MS.gene047892:intron 30.0%
AATCACGTAAATACAAGTCA+CGG + chr3.1:71127311-71127330 MS.gene047892:intron 30.0%
AATCCTAATAGCCATAACTT+TGG + chr3.1:71127697-71127716 MS.gene047892:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG + chr3.1:71127398-71127417 MS.gene047892:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG - chr3.1:71127988-71128007 None:intergenic 30.0%
CAAACCAATTTATTATGCCT+AGG - chr3.1:71127405-71127424 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG - chr3.1:71127875-71127894 None:intergenic 30.0%
CCTACTAAACTTGAATTAAG+AGG - chr3.1:71130012-71130031 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG + chr3.1:71127403-71127422 MS.gene047892:intron 30.0%
GATAAGGATATATGCATTCA+TGG - chr3.1:71130483-71130502 None:intergenic 30.0%
GGATTCAAATGTCAATTTAG+AGG + chr3.1:71129314-71129333 MS.gene047892:CDS 30.0%
GGGAAAATTTCATACCAATT+TGG - chr3.1:71129743-71129762 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG - chr3.1:71130348-71130367 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG + chr3.1:71129788-71129807 MS.gene047892:intron 30.0%
TAACTCAAATACAACCAACA+AGG - chr3.1:71128739-71128758 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG + chr3.1:71128952-71128971 MS.gene047892:CDS 30.0%
TACAAAGCAGAAATTGATGA+AGG + chr3.1:71130697-71130716 MS.gene047892:CDS 30.0%
TACAAATGACAACAAGTTCA+AGG + chr3.1:71130365-71130384 MS.gene047892:CDS 30.0%
TATTGTGTCAACCAAAGTTA+TGG - chr3.1:71127711-71127730 None:intergenic 30.0%
TCATATTGCTTTCATGTGTA+AGG - chr3.1:71129459-71129478 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG - chr3.1:71129567-71129586 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG - chr3.1:71127871-71127890 None:intergenic 30.0%
TTTATTCTTACCGTGATGAT+GGG - chr3.1:71130160-71130179 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG - chr3.1:71129764-71129783 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG + chr3.1:71127100-71127119 MS.gene047892:intron 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG + chr3.1:71130009-71130028 MS.gene047892:intron 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG + chr3.1:71127872-71127891 MS.gene047892:intron 30.0%
! GGGTAAAATAAACCTTTTCT+GGG - chr3.1:71128247-71128266 None:intergenic 30.0%
! GGTAAAATAAACCTTTTCTG+GGG - chr3.1:71128246-71128265 None:intergenic 30.0%
! TGGGACAAAATTTTGTATAC+AGG + chr3.1:71129016-71129035 MS.gene047892:CDS 30.0%
! TTTAGAACTCTTAACAACGA+GGG - chr3.1:71129763-71129782 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG - chr3.1:71130161-71130180 None:intergenic 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG + chr3.1:71128167-71128186 MS.gene047892:intron 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG + chr3.1:71129212-71129231 MS.gene047892:intron 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG + chr3.1:71129213-71129232 MS.gene047892:intron 30.0%
AAGTAATTGTATCGTCGGAA+CGG - chr3.1:71127129-71127148 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG + chr3.1:71129842-71129861 MS.gene047892:CDS 35.0%
ACATTTGAATCCACAACAGT+TGG - chr3.1:71129306-71129325 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG - chr3.1:71127882-71127901 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG + chr3.1:71127339-71127358 MS.gene047892:intron 35.0%
ATAATGAGTGAGGAGATCTT+TGG + chr3.1:71130124-71130143 MS.gene047892:CDS 35.0%
ATGGAGGAATAAAACTTCCT+AGG + chr3.1:71127385-71127404 MS.gene047892:intron 35.0%
CAACCAAAGTTATGGCTATT+AGG - chr3.1:71127703-71127722 None:intergenic 35.0%
CAATGCAGTAGTTTCATCAA+CGG - chr3.1:71128984-71129003 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG - chr3.1:71127989-71128008 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG - chr3.1:71128520-71128539 None:intergenic 35.0%
CTCATTATCAGAGAATCTTG+TGG - chr3.1:71130112-71130131 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG - chr3.1:71128459-71128478 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG + chr3.1:71128220-71128239 MS.gene047892:CDS 35.0%
GCTTTCCAATTCTGTCTTTA+AGG - chr3.1:71129837-71129856 None:intergenic 35.0%
GGATATATGCATTCATGGAA+AGG - chr3.1:71130478-71130497 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG - chr3.1:71127783-71127802 None:intergenic 35.0%
GTAAGACACGAAGTTATGAA+TGG + chr3.1:71126778-71126797 MS.gene047892:CDS 35.0%
GTTCTGTTCTGTTAAACAAC+TGG - chr3.1:71128717-71128736 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG - chr3.1:71129599-71129618 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG + chr3.1:71128956-71128975 MS.gene047892:CDS 35.0%
TCTTGACACAAGCAAATTAC+AGG + chr3.1:71130056-71130075 MS.gene047892:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG + chr3.1:71129829-71129848 MS.gene047892:CDS 35.0%
TGCAATTGGTATGCCATTAT+TGG + chr3.1:71129104-71129123 MS.gene047892:intron 35.0%
TGCATTGTTGCAACAAAAGT+GGG + chr3.1:71128997-71129016 MS.gene047892:CDS 35.0%
TTAACAGAACAGAACCTTGT+TGG + chr3.1:71128722-71128741 MS.gene047892:intron 35.0%
TTTACTAGGTTACAGCTAGA+CGG + chr3.1:71129635-71129654 MS.gene047892:intron 35.0%
! AGATTCTCTGATAATGAGTG+AGG + chr3.1:71130114-71130133 MS.gene047892:CDS 35.0%
! ATTGTTTTCAATGGCTATCC+AGG - chr3.1:71129404-71129423 None:intergenic 35.0%
! GGGGTAAAATAAACCTTTTC+TGG - chr3.1:71128248-71128267 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG - chr3.1:71127838-71127857 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG + chr3.1:71130616-71130635 MS.gene047892:CDS 35.0%
! TGGTTCATACTTTGCCATTT+GGG + chr3.1:71130546-71130565 MS.gene047892:CDS 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG + chr3.1:71130394-71130413 MS.gene047892:CDS 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG + chr3.1:71127550-71127569 MS.gene047892:intron 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG + chr3.1:71130393-71130412 MS.gene047892:CDS 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG + chr3.1:71130640-71130659 MS.gene047892:CDS 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG + chr3.1:71127366-71127385 MS.gene047892:intron 35.0%
!! GTATTGATTAAGGCCATGTT+TGG + chr3.1:71129336-71129355 MS.gene047892:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG + chr3.1:71129050-71129069 MS.gene047892:intron 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG - chr3.1:71130615-71130634 None:intergenic 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG - chr3.1:71130245-71130264 None:intergenic 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG - chr3.1:71128879-71128898 None:intergenic 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG + chr3.1:71129090-71129109 MS.gene047892:intron 35.0%
AAAAAGGCAGTTCTTTACCG+TGG + chr3.1:71130632-71130651 MS.gene047892:CDS 40.0%
AAAAGACTTTGCCCCCAAAT+TGG + chr3.1:71129726-71129745 MS.gene047892:CDS 40.0%
AAAAGGAAAGAGGTTGGACT+AGG - chr3.1:71127865-71127884 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG + chr3.1:71127319-71127338 MS.gene047892:intron 40.0%
AACGTAATCAGGAGAAATGC+AGG - chr3.1:71129698-71129717 None:intergenic 40.0%
AAGTTGACCTTCAGCATGAT+TGG + chr3.1:71128465-71128484 MS.gene047892:intron 40.0%
ACAGCTAGACGGATAATTTC+AGG + chr3.1:71129646-71129665 MS.gene047892:CDS 40.0%
ACCATCCAAGAAAAACAGAC+TGG - chr3.1:71129058-71129077 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG + chr3.1:71129293-71129312 MS.gene047892:CDS 40.0%
AGTCAAACCAATCATGCTGA+AGG - chr3.1:71128475-71128494 None:intergenic 40.0%
ATCTATAAGAGTTGTGGAGG+GGG + chr3.1:71128958-71128977 MS.gene047892:CDS 40.0%
ATGACTAACACTACACCAAG+TGG - chr3.1:71128420-71128439 None:intergenic 40.0%
CACAATGCGCGATAAATCAT+TGG - chr3.1:71129885-71129904 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG + chr3.1:71127338-71127357 MS.gene047892:intron 40.0%
CATCTATAAGAGTTGTGGAG+GGG + chr3.1:71128957-71128976 MS.gene047892:CDS 40.0%
CCTTCTCAGCTGAAGAAATT+GGG - chr3.1:71128268-71128287 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG + chr3.1:71128216-71128235 MS.gene047892:CDS 40.0%
CGTAGCAGTTGAGAAAAACT+CGG + chr3.1:71127899-71127918 MS.gene047892:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG + chr3.1:71128955-71128974 MS.gene047892:CDS 40.0%
CTGCATTGTTGCAACAAAAG+TGG + chr3.1:71128996-71129015 MS.gene047892:CDS 40.0%
CTTAAAAGACAGGGACAAGA+AGG + chr3.1:71127348-71127367 MS.gene047892:intron 40.0%
CTTCTCAGCTGAAGAAATTG+GGG - chr3.1:71128267-71128286 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG + chr3.1:71130275-71130294 MS.gene047892:intron 40.0%
GAAATAGTACCTGAACCACT+TGG + chr3.1:71128402-71128421 MS.gene047892:CDS 40.0%
GACGGATAATTTCAGGAAAG+TGG + chr3.1:71129653-71129672 MS.gene047892:CDS 40.0%
GCTAAGACTTAGAACCTGAT+TGG - chr3.1:71129529-71129548 None:intergenic 40.0%
GGCGCTAATTTATTCAATGG+AGG + chr3.1:71127369-71127388 MS.gene047892:intron 40.0%
GGTACTATTTCAGCTGAAGA+AGG - chr3.1:71128393-71128412 None:intergenic 40.0%
GGTTGTTTATGGAGGTGAAA+AGG + chr3.1:71129964-71129983 MS.gene047892:CDS 40.0%
GTACATCAGTGAAGAGTAGA+AGG - chr3.1:71128153-71128172 None:intergenic 40.0%
GTGGTTCATACTTTGCCATT+TGG + chr3.1:71130545-71130564 MS.gene047892:CDS 40.0%
TAGTGTTAGTCATCTCTGCT+TGG + chr3.1:71128427-71128446 MS.gene047892:CDS 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG - chr3.1:71128269-71128288 None:intergenic 40.0%
TCGTAGACAACAGTTTCAAG+CGG - chr3.1:71126894-71126913 None:intergenic 40.0%
TGAAAATGCTATGCAGGCAT+TGG - chr3.1:71127777-71127796 None:intergenic 40.0%
TGACACAAGCAAATTACAGG+AGG + chr3.1:71130059-71130078 MS.gene047892:intron 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG - chr3.1:71127901-71127920 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG + chr3.1:71128928-71128947 MS.gene047892:CDS 40.0%
! GGAGCGTCTAATACAATAGT+GGG - chr3.1:71130091-71130110 None:intergenic 40.0%
! GGTTCATACTTTGCCATTTG+GGG + chr3.1:71130547-71130566 MS.gene047892:CDS 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG + chr3.1:71129383-71129402 MS.gene047892:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG + chr3.1:71130548-71130567 MS.gene047892:CDS 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG - chr3.1:71127846-71127865 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG - chr3.1:71130092-71130111 None:intergenic 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG + chr3.1:71130395-71130414 MS.gene047892:CDS 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG + chr3.1:71130747-71130766 MS.gene047892:CDS 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG + chr3.1:71129054-71129073 MS.gene047892:intron 40.0%
!! GAAGATGGTTGATGAACAAC+AGG + chr3.1:71126827-71126846 MS.gene047892:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG + chr3.1:71126812-71126831 MS.gene047892:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG + chr3.1:71130641-71130660 MS.gene047892:CDS 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG + chr3.1:71129953-71129972 MS.gene047892:CDS 40.0%
!! TTATGAATGGAGAGTATCGC+AGG + chr3.1:71126791-71126810 MS.gene047892:CDS 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG - chr3.1:71127340-71127359 None:intergenic 40.0%
AAAAGTGGGACGGATAGTGA+TGG + chr3.1:71129227-71129246 MS.gene047892:CDS 45.0%
AAAGATGTTGGACGACGAGA+AGG + chr3.1:71129931-71129950 MS.gene047892:CDS 45.0%
AACAACACCAGTAACATCGC+CGG - chr3.1:71130732-71130751 None:intergenic 45.0%
AACACTACACCAAGTGGTTC+AGG - chr3.1:71128414-71128433 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG - chr3.1:71128840-71128859 None:intergenic 45.0%
AGTTACTCGCGAAATTCGCA+TGG + chr3.1:71127797-71127816 MS.gene047892:intron 45.0%
ATGCATCACCCGTAAAACCA+CGG - chr3.1:71130652-71130671 None:intergenic 45.0%
CACTGCTGGCGAACTTATTA+GGG + chr3.1:71128918-71128937 MS.gene047892:CDS 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG + chr3.1:71126705-71126724 MS.gene047892:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG + chr3.1:71128265-71128284 MS.gene047892:intron 45.0%
CGTCAAAGGAGAATTTCCCA+TGG - chr3.1:71130601-71130620 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG + chr3.1:71126893-71126912 MS.gene047892:CDS 45.0%
TAGACAACAGTTTCAAGCGG+TGG - chr3.1:71126891-71126910 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG - chr3.1:71128841-71128860 None:intergenic 45.0%
TATGAACCACAAGCTGCACA+AGG - chr3.1:71130535-71130554 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG + chr3.1:71128917-71128936 MS.gene047892:CDS 45.0%
TCCATTGCTTCCCATCATCA+CGG + chr3.1:71130147-71130166 MS.gene047892:CDS 45.0%
TCTGGCAAGGTTGTTTATGG+AGG + chr3.1:71129956-71129975 MS.gene047892:CDS 45.0%
TCTTTACCAAGCGAGCAAAG+TGG - chr3.1:71129916-71129935 None:intergenic 45.0%
TGAAGAGTCACAGAAGAAGG+TGG + chr3.1:71126695-71126714 MS.gene047892:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG + chr3.1:71127747-71127766 MS.gene047892:intron 45.0%
TGCTCGCTTGGTAAAGATGT+TGG + chr3.1:71129919-71129938 MS.gene047892:CDS 45.0%
TTCTAACCACTTTGCTCGCT+TGG + chr3.1:71129907-71129926 MS.gene047892:CDS 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG - chr3.1:71126881-71126900 None:intergenic 45.0%
! AGCTTCGATTTGATCAACGC+AGG + chr3.1:71130315-71130334 MS.gene047892:CDS 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG + chr3.1:71126756-71126775 MS.gene047892:CDS 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG + chr3.1:71130396-71130415 MS.gene047892:CDS 45.0%
! TTACGGGTGATGCATCGATA+AGG + chr3.1:71130657-71130676 MS.gene047892:CDS 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG + chr3.1:71129217-71129236 MS.gene047892:intron 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG - chr3.1:71129826-71129845 None:intergenic 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG + chr3.1:71129667-71129686 MS.gene047892:CDS 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG + chr3.1:71130743-71130762 MS.gene047892:CDS 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG - chr3.1:71128870-71128889 None:intergenic 45.0%
!!! AATTATAATTCATTTTTTTT+TGG + chr3.1:71126977-71126996 MS.gene047892:intron 5.0%
ACAATGGATGGCCCCAGAAA+AGG + chr3.1:71128232-71128251 MS.gene047892:CDS 50.0%
ACACCTTACACCAGTCGTTC+TGG + chr3.1:71129263-71129282 MS.gene047892:CDS 50.0%
AGTGGAATGGGTGCATACCA+TGG + chr3.1:71130581-71130600 MS.gene047892:CDS 50.0%
CCACAAGCTGCACAAGGAAA+AGG - chr3.1:71130529-71130548 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG + chr3.1:71128202-71128221 MS.gene047892:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG + chr3.1:71128833-71128852 MS.gene047892:CDS 50.0%
CTTGGAACAGGTGAACAAGC+TGG + chr3.1:71130287-71130306 MS.gene047892:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG - chr3.1:71128893-71128912 None:intergenic 50.0%
GCTGCTATAGCTCCAACAAC+TGG - chr3.1:71128848-71128867 None:intergenic 50.0%
GGCATCAACCTGGAAATGAG+AGG - chr3.1:71129816-71129835 None:intergenic 50.0%
GGGTGAAGAGTCACAGAAGA+AGG + chr3.1:71126692-71126711 MS.gene047892:CDS 50.0%
GTGGAATGGGTGCATACCAT+GGG + chr3.1:71130582-71130601 MS.gene047892:CDS 50.0%
GTTGTTGGAGCTATAGCAGC+CGG + chr3.1:71128848-71128867 MS.gene047892:CDS 50.0%
TGCTGGCGAACTTATTAGGG+AGG + chr3.1:71128921-71128940 MS.gene047892:CDS 50.0%
TGGCTATCCAGGAGAACTGA+AGG - chr3.1:71129393-71129412 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG + chr3.1:71129938-71129957 MS.gene047892:CDS 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG + chr3.1:71130554-71130573 MS.gene047892:CDS 50.0%
! AGGAAAGAGGTTGGACTAGG+CGG - chr3.1:71127862-71127881 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG + chr3.1:71130526-71130545 MS.gene047892:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG + chr3.1:71130710-71130729 MS.gene047892:CDS 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG - chr3.1:71130151-71130170 None:intergenic 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG + chr3.1:71130569-71130588 MS.gene047892:CDS 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG + chr3.1:71129805-71129824 MS.gene047892:intron 50.0%
AGTGGGACGGATAGTGATGG+CGG + chr3.1:71129230-71129249 MS.gene047892:CDS 55.0%
CTGTCACCAACTCCCCCAAA+TGG - chr3.1:71130563-71130582 None:intergenic 55.0%
GCTCCAGAACGACTGGTGTA+AGG - chr3.1:71129269-71129288 None:intergenic 55.0%
GGTGGTGTTTGACGGAGAAG+CGG + chr3.1:71126713-71126732 MS.gene047892:CDS 55.0%
! GTCGTTGGTGAAGGAGCTGA+GGG + chr3.1:71126740-71126759 MS.gene047892:CDS 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG + chr3.1:71129270-71129289 MS.gene047892:CDS 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG + chr3.1:71129943-71129962 MS.gene047892:CDS 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG + chr3.1:71130568-71130587 MS.gene047892:CDS 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG + chr3.1:71130563-71130582 MS.gene047892:CDS 55.0%
CCTCCAAGCTCCAGAACGAC+TGG - chr3.1:71129276-71129295 None:intergenic 60.0%
CTAGTCGCCGGCGATGTTAC+TGG + chr3.1:71130722-71130741 MS.gene047892:CDS 60.0%
GTTCGCCAGCAGTGAAGACG+AGG - chr3.1:71128912-71128931 None:intergenic 60.0%
TATAGCAGCCGGAAACGCCG+TGG + chr3.1:71128859-71128878 MS.gene047892:CDS 60.0%
TCCAGCCTCGTCTTCACTGC+TGG + chr3.1:71128904-71128923 MS.gene047892:CDS 60.0%
! CGTCGTTGGTGAAGGAGCTG+AGG + chr3.1:71126739-71126758 MS.gene047892:CDS 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG + chr3.1:71129273-71129292 MS.gene047892:CDS 60.0%
GCCAGCAGTGAAGACGAGGC+TGG - chr3.1:71128908-71128927 None:intergenic 65.0%
! AGCGGCGTCGTCGTTGGTGA+AGG + chr3.1:71126731-71126750 MS.gene047892:CDS 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG + chr3.1:71126725-71126744 MS.gene047892:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 71126687 71130775 71126687 ID=MS.gene047892
chr3.1 mRNA 71126687 71130775 71126687 ID=MS.gene047892.t1;Parent=MS.gene047892
chr3.1 exon 71126687 71126914 71126687 ID=MS.gene047892.t1.exon1;Parent=MS.gene047892.t1
chr3.1 CDS 71126687 71126914 71126687 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71128185 71128253 71128185 ID=MS.gene047892.t1.exon2;Parent=MS.gene047892.t1
chr3.1 CDS 71128185 71128253 71128185 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71128366 71128462 71128366 ID=MS.gene047892.t1.exon3;Parent=MS.gene047892.t1
chr3.1 CDS 71128366 71128462 71128366 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71128831 71129037 71128831 ID=MS.gene047892.t1.exon4;Parent=MS.gene047892.t1
chr3.1 CDS 71128831 71129037 71128831 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71129220 71129335 71129220 ID=MS.gene047892.t1.exon5;Parent=MS.gene047892.t1
chr3.1 CDS 71129220 71129335 71129220 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71129643 71129747 71129643 ID=MS.gene047892.t1.exon6;Parent=MS.gene047892.t1
chr3.1 CDS 71129643 71129747 71129643 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71129827 71129999 71129827 ID=MS.gene047892.t1.exon7;Parent=MS.gene047892.t1
chr3.1 CDS 71129827 71129999 71129827 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71130078 71130168 71130078 ID=MS.gene047892.t1.exon8;Parent=MS.gene047892.t1
chr3.1 CDS 71130078 71130168 71130078 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71130297 71130446 71130297 ID=MS.gene047892.t1.exon9;Parent=MS.gene047892.t1
chr3.1 CDS 71130297 71130446 71130297 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
chr3.1 exon 71130542 71130775 71130542 ID=MS.gene047892.t1.exon10;Parent=MS.gene047892.t1
chr3.1 CDS 71130542 71130775 71130542 ID=cds.MS.gene047892.t1;Parent=MS.gene047892.t1
Gene Sequence

>MS.gene047892

ATGTCGGGTGAAGAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGGTACCTAATTTCATGTTTAAGTTGCTTTCATATATATATGATTTTTATGGTCTCTCTTTTTAAATTATAATTCATTTTTTTTTGGTACGTGCAATTGAAATCGATAGAAGAGCTAGAGAATCAAGTTTTTTGTTATAACATAAACATCATAAGTTTTCAAGGCTGAGATATTCTTGAGATTTTTCATTTGGAGTCACTATTATGATGGCAACCGTTCCGACGATACAATTACTTTGATTTTTTTTCCTTGTATGACGTCAATATTTTATGTTTTCTTTAATAAAGGAGGAAACATGCTTTTCACTTTTTCCCTTCAAAAAGAAAAATGCTTTTCACCTTCTTTTTTTTTTACGGAACATGCTTTTCACTTGAACGATCACATTAAAGTTACTTCACAATCACGTAAATACAAGTCACGGAAACCAGGATGCTTCTTAAAAGACAGGGACAAGAAGGCGCTAATTTATTCAATGGAGGAATAAAACTTCCTAGGCATAATAAATTGGTTTGGTTTGGTTTTTATGAGAAAATATATCTAAATCAATTTGTTAGGAAATTTGAAAGTTAGTAGATAATTTGACCAATAGTTTTCGATATATAGTGATACTCTTTCTTTCAAATGATCGATCAAAGAATTGTGAGAACTAAAGTGTTCTGGAAAATATAAGTAAAAGGTGTATGTAAAATAAGGGTAAATTACAAGAAAAATAAACTTTGATTGACTGGTGTGTATGTAAAATGTTTTTTACAATGAGTAGTTGGAGATAAAAATGTTAAAGCTAAATCCTAATAGCCATAACTTTGGTTGACACAATATGCGCTCAGCTCAACTTGCGTATTAGTGTGAGACTGTGGCATGCCAATGCCTGCATAGCATTTTCAAGTTACTCGCGAAATTCGCATGGTCATGTGTGAGTGTGCCTCTTGACCGTGCTTAAAATTAGCCGCCTAGTCCAACCTCTTTCCTTTTTACTAAATGGACTCCGTAGCAGTTGAGAAAAACTCGGTTATACTATTCTCAACTACATTGGATTCAACTTAAAATATTTTTGGGTTTAAAAATTTAGTATCCCTTGGTTTCATTTCACTCAATGACACCGCTTTCCATAAATTCAAAATAGAGTAACCGAACATTTTGTAACATTTGTAACTAAACAAACATATTTTGGATGAATACAACTAAGCAATTGACAGGTCAATGTTGCAATCAATACAACTATAATAAAGATAATTTTCCTTCTACTCTTCACTGATGTACTTTGTTTTGCAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGTTTATTTTACCCCAATTTCTTCAGCTGAGAAGGACATTTTTCATTTATATTTCTTATATATAGTTTATTTGAATATTTTTATAACAAAAAGTTCCTTTAATAATATTTCAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTGTAAGTTGACCTTCAGCATGATTGGTTTGACTTATTTGAGTTTATTTACTTACACCAACATTCTTGAGACTGTTTAGTAGAACTTATATTGAAACAACTTATATGCAAGTCTACAAGCTGTTTTTGACTTATTTCCATAAATTTTTCACGATATCTTATAAAAACAGTTTGACTTTATTTTACCTTTTGTTATACAAATGGCTTATACATAGACACTTATATGATAAATGTGTATGCTATAAACACTTCATCCAGTTGTTTAACAGAACAGAACCTTGTTGGTTGTATTTGAGTTAATATTTTGAGCCTTTAGTTTCTTTAATAATCTATGAAGACTATAATATCACTCTCTCTGTCTGTCTTTTCAGTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTTGGTCTTGTTTATCACCAGTCTGTTTTTCTTGGATGGTTATGAATTGTTATTTTGGTTTTGTCGTGCAATTGGTATGCCATTATTGGTATTGTGAATTTTGAAATCTCATCTCAGATAATCAAATAAATACATCATTTGAACAAAAGATTTCATAGCATAAGTAATTACTTGATTTTCAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTATTGATTAAGGCCATGTTTGGATTGACTTATTAAGTTGTTATCAAGTTATTTCCTTCAGTTCTCCTGGATAGCCATTGAAAACAATTTAACTTTATTTTATCTTTTATTATAAAAAAACCTTACACATGAAAGCAATATGACAAATCGACAAGTGTTTATGTTATAAGCGTTTAATTAAATTTTTCATCCAATCAGGTTCTAAGTCTTAGCCTTCTTTTTTATTTTCCAGTCAGTAACTAGTTATATCACTTTGATCTCCTTCCCCTTAACTCATTATTGACTTAAATTAATTTGTGTTTACTAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTATGAAATTTTCCCTCGTTGTTAAGAGTTCTAAATATCTGTCTTTGTGTATCTAATGTTTGGTGCCTCTCATTTCCAGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGTAAGCTCTCCTCTTAATTCAAGTTTAGTAGGTTTTATATACTGCAATGCAATGGATCTTGACACAAGCAAATTACAGGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTAAGAATAAAAGACACAAAGAACTCTTTGAAAAGTACTCAAATATTCATCGATAAGCTTCATTAGCTTGTATCCAATTTAAAACAATGGGGCATCAATTATAATACTTTCTTTCTTGCTTGGAACAGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATGTAATAGTTTGTTTTTTATTTTCTAAAACCTTTCCATGAATGCATATATCCTTATCATGCAATGTTACTTATATCTTTTCCTTTTCCTTGTGCAGCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA
Protein sequence

>MS.gene047892.t1

MSGEESQKKVVFDGEAASSLVKELRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS