AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049066.t1 MTR_8g102470 97.329 337 4 2 1 337 1 332 0.0 659
MS.gene049066.t1 MTR_8g102470 99.026 308 3 0 30 337 1 308 0.0 617
MS.gene049066.t1 MTR_8g088900 49.333 300 146 3 34 328 7 305 9.13e-96 289
MS.gene049066.t1 MTR_2g099910 30.195 308 207 3 25 325 24 330 2.59e-40 144
MS.gene049066.t1 MTR_8g028120 31.557 244 164 3 42 284 2 243 1.09e-36 134
MS.gene049066.t1 MTR_2g099910 31.004 229 150 3 25 246 24 251 3.27e-29 113
MS.gene049066.t1 MTR_6g069685 27.742 310 217 4 33 336 315 623 1.77e-24 104
MS.gene049066.t1 MTR_6g069685 24.579 297 213 7 43 332 7 299 3.00e-14 73.9
MS.gene049066.t1 MTR_2g030400 25.904 332 212 8 3 307 1 325 8.48e-24 100
MS.gene049066.t1 MTR_2g099910 31.959 194 124 3 25 211 24 216 2.30e-23 97.1
MS.gene049066.t1 MTR_2g030400 25.610 328 210 8 3 303 1 321 1.75e-22 96.3
MS.gene049066.t1 MTR_2g030400 26.812 276 175 6 3 258 1 269 1.99e-19 87.4
MS.gene049066.t1 MTR_2g030400 27.953 254 156 6 3 236 1 247 2.24e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049066.t1 AT4G29120 71.848 341 81 2 1 335 1 332 2.97e-179 499
MS.gene049066.t1 AT1G71180 49.013 304 146 3 30 331 22 318 1.18e-84 258
MS.gene049066.t1 AT1G71170 47.039 304 154 3 30 331 1 299 2.68e-81 249
MS.gene049066.t1 AT1G17650 29.664 327 221 4 6 325 27 351 5.54e-41 147
MS.gene049066.t1 AT1G17650 30.986 284 194 2 43 325 10 292 2.25e-40 144
MS.gene049066.t1 AT3G25530 30.249 281 194 2 42 321 2 281 2.39e-37 135
MS.gene049066.t1 AT3G25530 28.826 281 187 2 42 321 2 270 5.52e-34 126
MS.gene049066.t1 AT3G25530 33.498 203 133 2 42 243 2 203 5.95e-31 116
MS.gene049066.t1 AT4G20930 29.210 291 181 7 43 311 40 327 7.64e-28 111
MS.gene049066.t1 AT1G18270 26.603 312 220 4 25 332 310 616 2.55e-23 101
MS.gene049066.t1 AT1G18270 21.034 290 221 5 43 327 5 291 1.16e-11 66.6
MS.gene049066.t1 AT1G18270 26.603 312 220 4 25 332 310 616 3.18e-23 101
MS.gene049066.t1 AT1G18270 21.034 290 221 5 43 327 5 291 1.30e-11 66.2
MS.gene049066.t1 AT1G18270 26.603 312 220 4 25 332 310 616 3.32e-23 101
MS.gene049066.t1 AT1G18270 21.034 290 221 5 43 327 5 291 1.55e-11 66.2
MS.gene049066.t1 AT1G18270 26.603 312 220 4 25 332 311 617 3.32e-23 101
MS.gene049066.t1 AT4G20930 28.063 253 157 7 81 311 6 255 2.85e-20 89.4

Find 134 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCATGGTGATGGTAATT+TGG 0.135296 4.1:+3232938 MS.gene049066:CDS
GGGTACTCAGGCTCTTATTT+TGG 0.213438 4.1:+3232959 MS.gene049066:CDS
GCGGGTGTTTGATGGGGTTA+TGG 0.236145 4.1:-3232118 None:intergenic
TTTGAAAGAATGTGAGAAAA+TGG 0.246727 4.1:+3232863 MS.gene049066:CDS
CCGGCGAGTGCGCCGGTGTT+TGG 0.261173 4.1:-3232363 None:intergenic
TCAATCGACGCTCCCGTTTC+CGG 0.279408 4.1:+3232480 MS.gene049066:CDS
CTGGATCGGCACCGGCGTAA+TGG 0.282706 4.1:+3232146 MS.gene049066:CDS
CAGCCCAGGCGGGTGTTTGA+TGG 0.285087 4.1:-3232126 None:intergenic
CGGGTGTTTGATGGGGTTAT+GGG 0.288686 4.1:-3232117 None:intergenic
TCCCTAAATCCTTCACAAAA+TGG 0.292923 4.1:-3232836 None:intergenic
CGGCGAGTGCGCCGGTGTTT+GGG 0.329981 4.1:-3232362 None:intergenic
GTCGAGGAGTGGTTGGGCTT+TGG 0.338068 4.1:-3232235 None:intergenic
CATTCTCACCCGCCACTTCA+TGG 0.353626 4.1:+3232083 MS.gene049066:CDS
TGGATCGGCACCGGCGTAAT+GGG 0.358966 4.1:+3232147 MS.gene049066:CDS
GTTTGATGGGGTTATGGGCT+CGG 0.365692 4.1:-3232112 None:intergenic
GGAGTGGTTGGGCTTTGGAG+GGG 0.366756 4.1:-3232230 None:intergenic
GAGTGGTTGGGCTTTGGAGG+GGG 0.366905 4.1:-3232229 None:intergenic
GCTCATGGTGATGGTAATTT+GGG 0.369711 4.1:+3232939 MS.gene049066:CDS
GAGGAGTGGTTGGGCTTTGG+AGG 0.376743 4.1:-3232232 None:intergenic
AGCCCAGGCGGGTGTTTGAT+GGG 0.383843 4.1:-3232125 None:intergenic
GGGTATTGCTTTGCCTGGTT+TGG 0.390445 4.1:+3232884 MS.gene049066:CDS
ACAGCTTTATGTGTCTCTTA+AGG 0.398105 4.1:+3232917 MS.gene049066:CDS
GCCACGGTCTCCACCGGAAA+CGG 0.412055 4.1:-3232493 None:intergenic
CATCAAACACCCGCCTGGGC+TGG 0.416712 4.1:+3232127 MS.gene049066:CDS
AACCCCATCAAACACCCGCC+TGG 0.417289 4.1:+3232122 MS.gene049066:CDS
TGGGGTTATGGGCTCGGAGG+TGG 0.424426 4.1:-3232106 None:intergenic
ACTTGATGTAGGGTTGTATC+TGG 0.426394 4.1:+3232719 MS.gene049066:CDS
TCGAAATCGCTTGAGTTGTA+TGG 0.429219 4.1:+3232768 MS.gene049066:CDS
GCAATTTCGACGGGTGCGGC+TGG 0.432079 4.1:+3232744 MS.gene049066:CDS
CGCCGATGTCGAGGAGTGGT+TGG 0.432520 4.1:-3232242 None:intergenic
GGATTGTGATGCGACGGCGT+GGG 0.436919 4.1:-3232283 None:intergenic
CCACGGTCTCCACCGGAAAC+GGG 0.438644 4.1:-3232492 None:intergenic
AGGAGTGGTTGGGCTTTGGA+GGG 0.441675 4.1:-3232231 None:intergenic
TTCAACAATGGTAGGGTTAG+TGG 0.453377 4.1:+3232668 MS.gene049066:CDS
TGAGATGGGCGCACATGGAT+TGG 0.459719 4.1:-3232170 None:intergenic
TGCGCCCATCTCATCCGTTC+CGG 0.464896 4.1:+3232180 MS.gene049066:CDS
GAAGACGGTGAGGGTGTAAC+CGG 0.466194 4.1:-3232199 None:intergenic
GATTGTGATGCGACGGCGTG+GGG 0.468193 4.1:-3232282 None:intergenic
TACATGGGAACTAGCGGAAA+AGG 0.469512 4.1:+3232609 MS.gene049066:CDS
CACGATTGATTCATCTCCAC+CGG 0.470291 4.1:-3232544 None:intergenic
CGCCTGGGCTGGATCGGCAC+CGG 0.472143 4.1:+3232138 MS.gene049066:CDS
ACGATAGCTTCAACAATGGT+AGG 0.474726 4.1:+3232660 MS.gene049066:CDS
AACACCCGCCTGGGCTGGAT+CGG 0.475780 4.1:+3232132 MS.gene049066:CDS
GCCGATGTCGAGGAGTGGTT+GGG 0.478660 4.1:-3232241 None:intergenic
GGAGACCGTGGCGCAAAGAA+TGG 0.480378 4.1:+3232504 MS.gene049066:CDS
TATGTGTCTCTTAAGGCTCA+TGG 0.483295 4.1:+3232924 MS.gene049066:CDS
CGGAGGTGGCCATGAAGTGG+CGG 0.483903 4.1:-3232092 None:intergenic
TTGAAAGAATGTGAGAAAAT+GGG 0.490579 4.1:+3232864 MS.gene049066:CDS
GCACTCGCCGGTCTCAAATC+CGG 0.490972 4.1:+3232375 MS.gene049066:CDS
TGTTTCTCTTCCACCTTCTG+TGG 0.492236 4.1:+3233001 MS.gene049066:CDS
GTGCGCCGGTGTTTGGGTCG+AGG 0.495329 4.1:-3232356 None:intergenic
CTCCACCGGCGAAGATTGCT+AGG 0.501858 4.1:-3232530 None:intergenic
GCCCAGGCGGGTGTTTGATG+GGG 0.515820 4.1:-3232124 None:intergenic
ACCCCATCAAACACCCGCCT+GGG 0.517433 4.1:+3232123 MS.gene049066:CDS
CTTTGCGCCACGGTCTCCAC+CGG 0.519012 4.1:-3232499 None:intergenic
GGATGCAATTTCGACGGGTG+CGG 0.521188 4.1:+3232740 MS.gene049066:CDS
TGAGGAGGTGAGTGTGAGAG+TGG 0.521698 4.1:-3232062 None:intergenic
GGGTGCCATTCTTTGCGCCA+CGG 0.523853 4.1:-3232509 None:intergenic
TGTAACCGGAACGGATGAGA+TGG 0.525879 4.1:-3232185 None:intergenic
TTGTGATGCGACGGCGTGGG+GGG 0.527594 4.1:-3232280 None:intergenic
CGCCGGTGCCGATCCAGCCC+AGG 0.529107 4.1:-3232140 None:intergenic
GGTGTTTGGGTCGAGGAGGA+CGG 0.532059 4.1:-3232349 None:intergenic
TGAAGTGGCGGGTGAGAATG+AGG 0.533969 4.1:-3232080 None:intergenic
AAAATGGGTATTGCTTTGCC+TGG 0.535454 4.1:+3232879 MS.gene049066:CDS
GTATCTGGATGCAATTTCGA+CGG 0.537538 4.1:+3232734 MS.gene049066:CDS
ACGGATGAGATGGGCGCACA+TGG 0.540422 4.1:-3232175 None:intergenic
TTTGAGACCGGCGAGTGCGC+CGG 0.541946 4.1:-3232370 None:intergenic
GCTCGGAGGTGGCCATGAAG+TGG 0.545180 4.1:-3232095 None:intergenic
CGAGGGTGGCGCCGATGTCG+AGG 0.546061 4.1:-3232251 None:intergenic
AGGACGGATCGAACGTCGGA+GGG 0.546487 4.1:-3232333 None:intergenic
TGATGGTAATTTGGGTACTC+AGG 0.548151 4.1:+3232947 MS.gene049066:CDS
GATAACGATAGCTTCAACAA+TGG 0.552492 4.1:+3232656 MS.gene049066:CDS
TCTCTTAAGGCTCATGGTGA+TGG 0.553451 4.1:+3232930 MS.gene049066:CDS
CACAAAGCGGGACTTGATGT+AGG 0.553732 4.1:+3232708 MS.gene049066:CDS
CCAAACACCGGCGCACTCGC+CGG 0.553830 4.1:+3232363 MS.gene049066:CDS
GGTGCCGATCCAGCCCAGGC+GGG 0.557386 4.1:-3232136 None:intergenic
GAGGACGGATCGAACGTCGG+AGG 0.559400 4.1:-3232334 None:intergenic
GGTGCGGTTGAAGACGGTGA+GGG 0.559737 4.1:-3232208 None:intergenic
GATGCCACCGGATTTGAGAC+CGG 0.562962 4.1:-3232382 None:intergenic
GCGATTTCGACGGCGAGGGA+AGG 0.563490 4.1:-3232429 None:intergenic
GGAGGTGGCCATGAAGTGGC+GGG 0.565150 4.1:-3232091 None:intergenic
TATCTGGATGCAATTTCGAC+GGG 0.565278 4.1:+3232735 MS.gene049066:CDS
CGGATTGTGATGCGACGGCG+TGG 0.568717 4.1:-3232284 None:intergenic
TGTTGAGCAAGTGCCAAACC+AGG 0.570957 4.1:-3232897 None:intergenic
GACGGCGAGGGAAGGATCTG+AGG 0.573970 4.1:-3232421 None:intergenic
ATGGTGTATGCACACAAAGC+GGG 0.574320 4.1:+3232696 MS.gene049066:CDS
TGCAGCGTCGGCGATTTCGA+CGG 0.575228 4.1:-3232439 None:intergenic
CAATGGTAGGGTTAGTGGAA+GGG 0.575951 4.1:+3232673 MS.gene049066:CDS
CCCGTTTCCGGTGGAGACCG+TGG 0.577236 4.1:+3232492 MS.gene049066:CDS
CATGTCAACGAGGATGCCAC+CGG 0.578295 4.1:-3232394 None:intergenic
ATCGACGCTCCCGTTTCCGG+TGG 0.581064 4.1:+3232483 MS.gene049066:CDS
ACAATGGTAGGGTTAGTGGA+AGG 0.583861 4.1:+3232672 MS.gene049066:CDS
TGATGCGGCGGTAGAGTGAA+CGG 0.584559 4.1:-3232038 None:intergenic
TGGTAAGAGAATTCTGAAGA+GGG 0.585420 4.1:+3232788 MS.gene049066:CDS
CATGGATTGGCCCATTACGC+CGG 0.585916 4.1:-3232157 None:intergenic
GGTAGGGTTAGTGGAAGGGA+TGG 0.586755 4.1:+3232677 MS.gene049066:CDS
CGGAAACGTAGGAATGGAAG+TGG 0.589829 4.1:-3232018 None:intergenic
GTAACCGGAACGGATGAGAT+GGG 0.590915 4.1:-3232184 None:intergenic
TGATTTCATACCACAGAAGG+TGG 0.591447 4.1:-3233011 None:intergenic
CGGTGCCGATCCAGCCCAGG+CGG 0.593100 4.1:-3232137 None:intergenic
CGATAGCTTCAACAATGGTA+GGG 0.594033 4.1:+3232661 MS.gene049066:CDS
GCCCAACCACTCCTCGACAT+CGG 0.595927 4.1:+3232240 MS.gene049066:CDS
ATTGTGATGCGACGGCGTGG+GGG 0.599351 4.1:-3232281 None:intergenic
GAATGATTTCATACCACAGA+AGG 0.605162 4.1:-3233014 None:intergenic
TTCCCCAATGATGAAAACAA+TGG 0.611373 4.1:-3232579 None:intergenic
ACAAAGCGGGACTTGATGTA+GGG 0.611508 4.1:+3232709 MS.gene049066:CDS
GTCCTCCTCGACCCAAACAC+CGG 0.611555 4.1:+3232351 MS.gene049066:CDS
AGTGAACGGAAACGTAGGAA+TGG 0.613244 4.1:-3232024 None:intergenic
GGCACCCTAGCAATCTTCGC+CGG 0.613387 4.1:+3232525 MS.gene049066:CDS
GTGGCGCCGATGTCGAGGAG+TGG 0.618486 4.1:-3232246 None:intergenic
GGGTGCGGTTGAAGACGGTG+AGG 0.619880 4.1:-3232209 None:intergenic
GTCGGCGATTTCGACGGCGA+GGG 0.623638 4.1:-3232433 None:intergenic
GGACGGATCGAACGTCGGAG+GGG 0.625313 4.1:-3232332 None:intergenic
CTCGCCGGTCTCAAATCCGG+TGG 0.625923 4.1:+3232378 MS.gene049066:CDS
ATGGTAAGAGAATTCTGAAG+AGG 0.627122 4.1:+3232787 MS.gene049066:CDS
CGTCGGCGATTTCGACGGCG+AGG 0.628317 4.1:-3232434 None:intergenic
GACGTCGGATTGTGATGCGA+CGG 0.628555 4.1:-3232289 None:intergenic
ACCCTAGCAATCTTCGCCGG+TGG 0.629709 4.1:+3232528 MS.gene049066:CDS
GAGTGTGAGAGTGGCTGATG+CGG 0.630259 4.1:-3232053 None:intergenic
ATTGGGGAAAGTGAACTACA+TGG 0.635633 4.1:+3232593 MS.gene049066:CDS
TGATGGGGTTATGGGCTCGG+AGG 0.636250 4.1:-3232109 None:intergenic
TGTGAGAGTGGCTGATGCGG+CGG 0.637898 4.1:-3232050 None:intergenic
GTCGGAGGGGTAACCAACGA+TGG 0.641353 4.1:-3232319 None:intergenic
CGCCGGTGTTTGGGTCGAGG+AGG 0.641635 4.1:-3232353 None:intergenic
GTGAACTACATGGGAACTAG+CGG 0.652338 4.1:+3232603 MS.gene049066:CDS
GGTAGAGTGAACGGAAACGT+AGG 0.661215 4.1:-3232029 None:intergenic
TCCACCGGCGAAGATTGCTA+GGG 0.664093 4.1:-3232529 None:intergenic
CGGTGAGGGTGTAACCGGAA+CGG 0.665734 4.1:-3232194 None:intergenic
GATGGTGTATGCACACAAAG+CGG 0.671363 4.1:+3232695 MS.gene049066:CDS
TTGGGGAAAGTGAACTACAT+GGG 0.676398 4.1:+3232594 MS.gene049066:CDS
GAGGAGGACGGATCGAACGT+CGG 0.678301 4.1:-3232337 None:intergenic
AACGATGGAGAAAACGACGT+CGG 0.717582 4.1:-3232304 None:intergenic
CTGAGGTTGTCATGTCAACG+AGG 0.717734 4.1:-3232404 None:intergenic
AGTGGCGGGTGAGAATGAGG+AGG 0.762010 4.1:-3232077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGAAAGAATGTGAGAAAAT+GGG + chr4.1:3232864-3232883 MS.gene049066:CDS 25.0%
! TTTGAAAGAATGTGAGAAAA+TGG + chr4.1:3232863-3232882 MS.gene049066:CDS 25.0%
! AACCATTTTGTGAAGGATTT+AGG + chr4.1:3232834-3232853 MS.gene049066:CDS 30.0%
! ACCATTTTGTGAAGGATTTA+GGG + chr4.1:3232835-3232854 MS.gene049066:CDS 30.0%
! TCTCCATTGTTTTCATCATT+GGG + chr4.1:3232576-3232595 MS.gene049066:CDS 30.0%
! TTATGTGAACCATTTTGTGA+AGG + chr4.1:3232827-3232846 MS.gene049066:CDS 30.0%
! TTCTCCATTGTTTTCATCAT+TGG + chr4.1:3232575-3232594 MS.gene049066:CDS 30.0%
GATAACGATAGCTTCAACAA+TGG + chr4.1:3232656-3232675 MS.gene049066:CDS 35.0%
TCCCTAAATCCTTCACAAAA+TGG - chr4.1:3232839-3232858 None:intergenic 35.0%
TTCCCCAATGATGAAAACAA+TGG - chr4.1:3232582-3232601 None:intergenic 35.0%
! ACAGCTTTATGTGTCTCTTA+AGG + chr4.1:3232917-3232936 MS.gene049066:CDS 35.0%
! ATGGTAAGAGAATTCTGAAG+AGG + chr4.1:3232787-3232806 MS.gene049066:CDS 35.0%
! CTCCATTGTTTTCATCATTG+GGG + chr4.1:3232577-3232596 MS.gene049066:CDS 35.0%
! TGGTAAGAGAATTCTGAAGA+GGG + chr4.1:3232788-3232807 MS.gene049066:CDS 35.0%
ACGATAGCTTCAACAATGGT+AGG + chr4.1:3232660-3232679 MS.gene049066:CDS 40.0%
ACTTGATGTAGGGTTGTATC+TGG + chr4.1:3232719-3232738 MS.gene049066:CDS 40.0%
ATTGGGGAAAGTGAACTACA+TGG + chr4.1:3232593-3232612 MS.gene049066:CDS 40.0%
CGATAGCTTCAACAATGGTA+GGG + chr4.1:3232661-3232680 MS.gene049066:CDS 40.0%
GTATCTGGATGCAATTTCGA+CGG + chr4.1:3232734-3232753 MS.gene049066:CDS 40.0%
TATCTGGATGCAATTTCGAC+GGG + chr4.1:3232735-3232754 MS.gene049066:CDS 40.0%
TATGTGTCTCTTAAGGCTCA+TGG + chr4.1:3232924-3232943 MS.gene049066:CDS 40.0%
TGATGGTAATTTGGGTACTC+AGG + chr4.1:3232947-3232966 MS.gene049066:CDS 40.0%
TTCAACAATGGTAGGGTTAG+TGG + chr4.1:3232668-3232687 MS.gene049066:CDS 40.0%
TTGGGGAAAGTGAACTACAT+GGG + chr4.1:3232594-3232613 MS.gene049066:CDS 40.0%
! AAAATGGGTATTGCTTTGCC+TGG + chr4.1:3232879-3232898 MS.gene049066:CDS 40.0%
! TCGAAATCGCTTGAGTTGTA+TGG + chr4.1:3232768-3232787 MS.gene049066:CDS 40.0%
!! GCTCATGGTGATGGTAATTT+GGG + chr4.1:3232939-3232958 MS.gene049066:CDS 40.0%
!! GTTTTTAACTGATGCAGCGT+CGG - chr4.1:3232454-3232473 None:intergenic 40.0%
!!! TGAAGAGGGATTTTGAAGCA+GGG + chr4.1:3232802-3232821 MS.gene049066:CDS 40.0%
AACGATGGAGAAAACGACGT+CGG - chr4.1:3232307-3232326 None:intergenic 45.0%
ACAAAGCGGGACTTGATGTA+GGG + chr4.1:3232709-3232728 MS.gene049066:CDS 45.0%
AGTGAACGGAAACGTAGGAA+TGG - chr4.1:3232027-3232046 None:intergenic 45.0%
ATGGTGTATGCACACAAAGC+GGG + chr4.1:3232696-3232715 MS.gene049066:CDS 45.0%
GATGGTGTATGCACACAAAG+CGG + chr4.1:3232695-3232714 MS.gene049066:CDS 45.0%
GTGAACTACATGGGAACTAG+CGG + chr4.1:3232603-3232622 MS.gene049066:CDS 45.0%
TACATGGGAACTAGCGGAAA+AGG + chr4.1:3232609-3232628 MS.gene049066:CDS 45.0%
TCTCTTAAGGCTCATGGTGA+TGG + chr4.1:3232930-3232949 MS.gene049066:CDS 45.0%
TGTTTCTCTTCCACCTTCTG+TGG + chr4.1:3233001-3233020 MS.gene049066:CDS 45.0%
! ACAATGGTAGGGTTAGTGGA+AGG + chr4.1:3232672-3232691 MS.gene049066:CDS 45.0%
! CAATGGTAGGGTTAGTGGAA+GGG + chr4.1:3232673-3232692 MS.gene049066:CDS 45.0%
! CACGATTGATTCATCTCCAC+CGG - chr4.1:3232547-3232566 None:intergenic 45.0%
!! GGCTCATGGTGATGGTAATT+TGG + chr4.1:3232938-3232957 MS.gene049066:CDS 45.0%
!! GGGTACTCAGGCTCTTATTT+TGG + chr4.1:3232959-3232978 MS.gene049066:CDS 45.0%
!!! CTGAAGAGGGATTTTGAAGC+AGG + chr4.1:3232801-3232820 MS.gene049066:CDS 45.0%
CACAAAGCGGGACTTGATGT+AGG + chr4.1:3232708-3232727 MS.gene049066:CDS 50.0%
CGGAAACGTAGGAATGGAAG+TGG - chr4.1:3232021-3232040 None:intergenic 50.0%
CGGGTGTTTGATGGGGTTAT+GGG - chr4.1:3232120-3232139 None:intergenic 50.0%
CTGAGGTTGTCATGTCAACG+AGG - chr4.1:3232407-3232426 None:intergenic 50.0%
GGTAGAGTGAACGGAAACGT+AGG - chr4.1:3232032-3232051 None:intergenic 50.0%
GTAACCGGAACGGATGAGAT+GGG - chr4.1:3232187-3232206 None:intergenic 50.0%
GTTTGATGGGGTTATGGGCT+CGG - chr4.1:3232115-3232134 None:intergenic 50.0%
TGTAACCGGAACGGATGAGA+TGG - chr4.1:3232188-3232207 None:intergenic 50.0%
TGTTGAGCAAGTGCCAAACC+AGG - chr4.1:3232900-3232919 None:intergenic 50.0%
! GGGTATTGCTTTGCCTGGTT+TGG + chr4.1:3232884-3232903 MS.gene049066:CDS 50.0%
!! GACGTCGTTTTCTCCATCGT+TGG + chr4.1:3232306-3232325 MS.gene049066:CDS 50.0%
CATGTCAACGAGGATGCCAC+CGG - chr4.1:3232397-3232416 None:intergenic 55.0%
CATTCTCACCCGCCACTTCA+TGG + chr4.1:3232083-3232102 MS.gene049066:CDS 55.0%
GACGTCGGATTGTGATGCGA+CGG - chr4.1:3232292-3232311 None:intergenic 55.0%
GAGTGTGAGAGTGGCTGATG+CGG - chr4.1:3232056-3232075 None:intergenic 55.0%
GCGGGTGTTTGATGGGGTTA+TGG - chr4.1:3232121-3232140 None:intergenic 55.0%
GGATGCAATTTCGACGGGTG+CGG + chr4.1:3232740-3232759 MS.gene049066:CDS 55.0%
TCAATCGACGCTCCCGTTTC+CGG + chr4.1:3232480-3232499 MS.gene049066:CDS 55.0%
TCCACCGGCGAAGATTGCTA+GGG - chr4.1:3232532-3232551 None:intergenic 55.0%
TGAGATGGGCGCACATGGAT+TGG - chr4.1:3232173-3232192 None:intergenic 55.0%
TGAGGAGGTGAGTGTGAGAG+TGG - chr4.1:3232065-3232084 None:intergenic 55.0%
TGATGCGGCGGTAGAGTGAA+CGG - chr4.1:3232041-3232060 None:intergenic 55.0%
! GAAGACGGTGAGGGTGTAAC+CGG - chr4.1:3232202-3232221 None:intergenic 55.0%
! GATGCCACCGGATTTGAGAC+CGG - chr4.1:3232385-3232404 None:intergenic 55.0%
! GGTAGGGTTAGTGGAAGGGA+TGG + chr4.1:3232677-3232696 MS.gene049066:CDS 55.0%
!! AGGAGTGGTTGGGCTTTGGA+GGG - chr4.1:3232234-3232253 None:intergenic 55.0%
!! CATGGATTGGCCCATTACGC+CGG - chr4.1:3232160-3232179 None:intergenic 55.0%
!! TGAAGTGGCGGGTGAGAATG+AGG - chr4.1:3232083-3232102 None:intergenic 55.0%
AACCCCATCAAACACCCGCC+TGG + chr4.1:3232122-3232141 MS.gene049066:CDS 60.0%
ACCCCATCAAACACCCGCCT+GGG + chr4.1:3232123-3232142 MS.gene049066:CDS 60.0%
ACCCTAGCAATCTTCGCCGG+TGG + chr4.1:3232528-3232547 MS.gene049066:CDS 60.0%
ACGGATGAGATGGGCGCACA+TGG - chr4.1:3232178-3232197 None:intergenic 60.0%
AGCCCAGGCGGGTGTTTGAT+GGG - chr4.1:3232128-3232147 None:intergenic 60.0%
AGGACGGATCGAACGTCGGA+GGG - chr4.1:3232336-3232355 None:intergenic 60.0%
ATTGTGATGCGACGGCGTGG+GGG - chr4.1:3232284-3232303 None:intergenic 60.0%
CTCCACCGGCGAAGATTGCT+AGG - chr4.1:3232533-3232552 None:intergenic 60.0%
GAGGAGGACGGATCGAACGT+CGG - chr4.1:3232340-3232359 None:intergenic 60.0%
GATTGTGATGCGACGGCGTG+GGG - chr4.1:3232285-3232304 None:intergenic 60.0%
GCACTCGCCGGTCTCAAATC+CGG + chr4.1:3232375-3232394 MS.gene049066:CDS 60.0%
GCCCAACCACTCCTCGACAT+CGG + chr4.1:3232240-3232259 MS.gene049066:CDS 60.0%
GCCGATGTCGAGGAGTGGTT+GGG - chr4.1:3232244-3232263 None:intergenic 60.0%
GGAGACCGTGGCGCAAAGAA+TGG + chr4.1:3232504-3232523 MS.gene049066:CDS 60.0%
GGATTGTGATGCGACGGCGT+GGG - chr4.1:3232286-3232305 None:intergenic 60.0%
GGCACCCTAGCAATCTTCGC+CGG + chr4.1:3232525-3232544 MS.gene049066:CDS 60.0%
GGTGCGGTTGAAGACGGTGA+GGG - chr4.1:3232211-3232230 None:intergenic 60.0%
GGTGTTTGGGTCGAGGAGGA+CGG - chr4.1:3232352-3232371 None:intergenic 60.0%
GTCCTCCTCGACCCAAACAC+CGG + chr4.1:3232351-3232370 MS.gene049066:CDS 60.0%
GTCGAGGAGTGGTTGGGCTT+TGG - chr4.1:3232238-3232257 None:intergenic 60.0%
GTCGGAGGGGTAACCAACGA+TGG - chr4.1:3232322-3232341 None:intergenic 60.0%
TGATGGGGTTATGGGCTCGG+AGG - chr4.1:3232112-3232131 None:intergenic 60.0%
TGCGCCCATCTCATCCGTTC+CGG + chr4.1:3232180-3232199 MS.gene049066:CDS 60.0%
TGTGAGAGTGGCTGATGCGG+CGG - chr4.1:3232053-3232072 None:intergenic 60.0%
! CGGTGAGGGTGTAACCGGAA+CGG - chr4.1:3232197-3232216 None:intergenic 60.0%
! GAGGAGTGGTTGGGCTTTGG+AGG - chr4.1:3232235-3232254 None:intergenic 60.0%
!! AGTGGCGGGTGAGAATGAGG+AGG - chr4.1:3232080-3232099 None:intergenic 60.0%
!! GAGTGGTTGGGCTTTGGAGG+GGG - chr4.1:3232232-3232251 None:intergenic 60.0%
!! GGAGTGGTTGGGCTTTGGAG+GGG - chr4.1:3232233-3232252 None:intergenic 60.0%
!! GGGTGCCATTCTTTGCGCCA+CGG - chr4.1:3232512-3232531 None:intergenic 60.0%
!! TGCAGCGTCGGCGATTTCGA+CGG - chr4.1:3232442-3232461 None:intergenic 60.0%
!! TGGATCGGCACCGGCGTAAT+GGG + chr4.1:3232147-3232166 MS.gene049066:CDS 60.0%
ATCGACGCTCCCGTTTCCGG+TGG + chr4.1:3232483-3232502 MS.gene049066:CDS 65.0%
CAGCCCAGGCGGGTGTTTGA+TGG - chr4.1:3232129-3232148 None:intergenic 65.0%
CATCAAACACCCGCCTGGGC+TGG + chr4.1:3232127-3232146 MS.gene049066:CDS 65.0%
CCACGGTCTCCACCGGAAAC+GGG - chr4.1:3232495-3232514 None:intergenic 65.0%
CGCCGATGTCGAGGAGTGGT+TGG - chr4.1:3232245-3232264 None:intergenic 65.0%
CGGAGGTGGCCATGAAGTGG+CGG - chr4.1:3232095-3232114 None:intergenic 65.0%
CGGATTGTGATGCGACGGCG+TGG - chr4.1:3232287-3232306 None:intergenic 65.0%
CTCGCCGGTCTCAAATCCGG+TGG + chr4.1:3232378-3232397 MS.gene049066:CDS 65.0%
CTTTGCGCCACGGTCTCCAC+CGG - chr4.1:3232502-3232521 None:intergenic 65.0%
GACGGCGAGGGAAGGATCTG+AGG - chr4.1:3232424-3232443 None:intergenic 65.0%
GAGGACGGATCGAACGTCGG+AGG - chr4.1:3232337-3232356 None:intergenic 65.0%
GCAATTTCGACGGGTGCGGC+TGG + chr4.1:3232744-3232763 MS.gene049066:CDS 65.0%
GCCACGGTCTCCACCGGAAA+CGG - chr4.1:3232496-3232515 None:intergenic 65.0%
GCCCAGGCGGGTGTTTGATG+GGG - chr4.1:3232127-3232146 None:intergenic 65.0%
GCGATTTCGACGGCGAGGGA+AGG - chr4.1:3232432-3232451 None:intergenic 65.0%
GCTCGGAGGTGGCCATGAAG+TGG - chr4.1:3232098-3232117 None:intergenic 65.0%
GGACGGATCGAACGTCGGAG+GGG - chr4.1:3232335-3232354 None:intergenic 65.0%
GGAGGTGGCCATGAAGTGGC+GGG - chr4.1:3232094-3232113 None:intergenic 65.0%
GGGTGCGGTTGAAGACGGTG+AGG - chr4.1:3232212-3232231 None:intergenic 65.0%
GTCGGCGATTTCGACGGCGA+GGG - chr4.1:3232436-3232455 None:intergenic 65.0%
TGGGGTTATGGGCTCGGAGG+TGG - chr4.1:3232109-3232128 None:intergenic 65.0%
TTGTGATGCGACGGCGTGGG+GGG - chr4.1:3232283-3232302 None:intergenic 65.0%
! AACACCCGCCTGGGCTGGAT+CGG + chr4.1:3232132-3232151 MS.gene049066:CDS 65.0%
! GGAGGGGGTGCGGTTGAAGA+CGG - chr4.1:3232217-3232236 None:intergenic 65.0%
! TTTGAGACCGGCGAGTGCGC+CGG - chr4.1:3232373-3232392 None:intergenic 65.0%
!! CTGGATCGGCACCGGCGTAA+TGG + chr4.1:3232146-3232165 MS.gene049066:CDS 65.0%
!! GTTGGGCTTTGGAGGGGGTG+CGG - chr4.1:3232227-3232246 None:intergenic 65.0%
CCAAACACCGGCGCACTCGC+CGG + chr4.1:3232363-3232382 MS.gene049066:CDS 70.0%
CCCGTTTCCGGTGGAGACCG+TGG + chr4.1:3232492-3232511 MS.gene049066:CDS 70.0%
CGCCGGTGTTTGGGTCGAGG+AGG - chr4.1:3232356-3232375 None:intergenic 70.0%
CGTCGGCGATTTCGACGGCG+AGG - chr4.1:3232437-3232456 None:intergenic 70.0%
! CGGCGAGTGCGCCGGTGTTT+GGG - chr4.1:3232365-3232384 None:intergenic 70.0%
! GTGCGCCGGTGTTTGGGTCG+AGG - chr4.1:3232359-3232378 None:intergenic 70.0%
!! GTGGCGCCGATGTCGAGGAG+TGG - chr4.1:3232249-3232268 None:intergenic 70.0%
GGCGTGGGGGGAAGTGGCGA+GGG - chr4.1:3232271-3232290 None:intergenic 75.0%
GTGGGGGGAAGTGGCGAGGG+TGG - chr4.1:3232268-3232287 None:intergenic 75.0%
TGCGACGGCGTGGGGGGAAG+TGG - chr4.1:3232277-3232296 None:intergenic 75.0%
! CCGGCGAGTGCGCCGGTGTT+TGG - chr4.1:3232366-3232385 None:intergenic 75.0%
! CGCCTGGGCTGGATCGGCAC+CGG + chr4.1:3232138-3232157 MS.gene049066:CDS 75.0%
!! CGAGGGTGGCGCCGATGTCG+AGG - chr4.1:3232254-3232273 None:intergenic 75.0%
!! CGGTGCCGATCCAGCCCAGG+CGG - chr4.1:3232140-3232159 None:intergenic 75.0%
!! GGTGCCGATCCAGCCCAGGC+GGG - chr4.1:3232139-3232158 None:intergenic 75.0%
! CGGCGTGGGGGGAAGTGGCG+AGG - chr4.1:3232272-3232291 None:intergenic 80.0%
!!! CGCCGGTGCCGATCCAGCCC+AGG - chr4.1:3232143-3232162 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3232015 3233028 3232015 ID=MS.gene049066
chr4.1 mRNA 3232015 3233028 3232015 ID=MS.gene049066.t1;Parent=MS.gene049066
chr4.1 exon 3232015 3233028 3232015 ID=MS.gene049066.t1.exon1;Parent=MS.gene049066.t1
chr4.1 CDS 3232015 3233028 3232015 ID=cds.MS.gene049066.t1;Parent=MS.gene049066.t1
Gene Sequence

>MS.gene049066

ATGCCACTTCCATTCCTACGTTTCCGTTCACTCTACCGCCGCATCAGCCACTCTCACACTCACCTCCTCATTCTCACCCGCCACTTCATGGCCACCTCCGAGCCCATAACCCCATCAAACACCCGCCTGGGCTGGATCGGCACCGGCGTAATGGGCCAATCCATGTGCGCCCATCTCATCCGTTCCGGTTACACCCTCACCGTCTTCAACCGCACCCCCTCCAAAGCCCAACCACTCCTCGACATCGGCGCCACCCTCGCCACTTCCCCCCACGCCGTCGCATCACAATCCGACGTCGTTTTCTCCATCGTTGGTTACCCCTCCGACGTTCGATCCGTCCTCCTCGACCCAAACACCGGCGCACTCGCCGGTCTCAAATCCGGTGGCATCCTCGTTGACATGACAACCTCAGATCCTTCCCTCGCCGTCGAAATCGCCGACGCTGCATCAGTTAAAAACTGTCACTCAATCGACGCTCCCGTTTCCGGTGGAGACCGTGGCGCAAAGAATGGCACCCTAGCAATCTTCGCCGGTGGAGATGAATCAATCGTGAAAAAACTTTCTCCATTGTTTTCATCATTGGGGAAAGTGAACTACATGGGAACTAGCGGAAAAGGTCAATTCGCGAAGCTAGCTAATCAGATAACGATAGCTTCAACAATGGTAGGGTTAGTGGAAGGGATGGTGTATGCACACAAAGCGGGACTTGATGTAGGGTTGTATCTGGATGCAATTTCGACGGGTGCGGCTGGTTCGAAATCGCTTGAGTTGTATGGTAAGAGAATTCTGAAGAGGGATTTTGAAGCAGGGTTTTATGTGAACCATTTTGTGAAGGATTTAGGGATTTGTTTGAAAGAATGTGAGAAAATGGGTATTGCTTTGCCTGGTTTGGCACTTGCTCAACAGCTTTATGTGTCTCTTAAGGCTCATGGTGATGGTAATTTGGGTACTCAGGCTCTTATTTTGGTTCTTGAGCGACTCAACAATGTTTCTCTTCCACCTTCTGTGGTATGA
Protein sequence

>MS.gene049066.t1

MPLPFLRFRSLYRRISHSHTHLLILTRHFMATSEPITPSNTRLGWIGTGVMGQSMCAHLIRSGYTLTVFNRTPSKAQPLLDIGATLATSPHAVASQSDVVFSIVGYPSDVRSVLLDPNTGALAGLKSGGILVDMTTSDPSLAVEIADAASVKNCHSIDAPVSGGDRGAKNGTLAIFAGGDESIVKKLSPLFSSLGKVNYMGTSGKGQFAKLANQITIASTMVGLVEGMVYAHKAGLDVGLYLDAISTGAAGSKSLELYGKRILKRDFEAGFYVNHFVKDLGICLKECEKMGIALPGLALAQQLYVSLKAHGDGNLGTQALILVLERLNNVSLPPSVV