AlfalfaGEDB | MS.gene072153

M. sativa cultivar XinJiangDaYe / MS.gene072153

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072153.t1	KEH18277.1	96.2	79	3	0	1	79	1	79	2.90E-31	144.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072153.t1	A0A072TLH5	96.2	79	3	0	1	79	1	79	2.1e-31	144.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene072153	0.829605	4.69E-55	-1.69E-46
MS.gene04919	MS.gene072153	0.81338	2.64E-51	-1.69E-46
MS.gene04920	MS.gene072153	0.83483	2.39E-56	-1.69E-46
MS.gene049254	MS.gene072153	0.816037	6.80E-52	-1.69E-46
MS.gene049283	MS.gene072153	0.882147	1.33E-70	-1.69E-46
MS.gene049385	MS.gene072153	-0.810156	1.33E-50	-1.69E-46
MS.gene049419	MS.gene072153	-0.862577	4.59E-64	-1.69E-46
MS.gene049452	MS.gene072153	0.832657	8.34E-56	-1.69E-46
MS.gene049499	MS.gene072153	0.855046	8.21E-62	-1.69E-46
MS.gene049983	MS.gene072153	0.863947	1.73E-64	-1.69E-46
MS.gene050105	MS.gene072153	0.817103	3.92E-52	-1.69E-46
MS.gene050414	MS.gene072153	0.817722	2.85E-52	-1.69E-46
MS.gene050571	MS.gene072153	0.808389	3.17E-50	-1.69E-46
MS.gene050646	MS.gene072153	0.82428	8.79E-54	-1.69E-46
MS.gene050654	MS.gene072153	0.836762	7.74E-57	-1.69E-46
MS.gene050945	MS.gene072153	0.801721	7.88E-49	-1.69E-46
MS.gene051122	MS.gene072153	0.816661	4.93E-52	-1.69E-46
MS.gene051275	MS.gene072153	0.842417	2.62E-58	-1.69E-46
MS.gene051332	MS.gene072153	0.812811	3.51E-51	-1.69E-46
MS.gene051637	MS.gene072153	0.815776	7.77E-52	-1.69E-46
MS.gene051856	MS.gene072153	0.815417	9.35E-52	-1.69E-46
MS.gene052016	MS.gene072153	0.825968	3.51E-54	-1.69E-46
MS.gene052118	MS.gene072153	0.834228	3.38E-56	-1.69E-46
MS.gene05216	MS.gene072153	0.816417	5.59E-52	-1.69E-46
MS.gene052463	MS.gene072153	0.81012	1.35E-50	-1.69E-46
MS.gene052533	MS.gene072153	0.801793	7.62E-49	-1.69E-46
MS.gene052534	MS.gene072153	0.823061	1.70E-53	-1.69E-46
MS.gene052674	MS.gene072153	0.81966	1.03E-52	-1.69E-46
MS.gene052675	MS.gene072153	0.819135	1.36E-52	-1.69E-46
MS.gene052677	MS.gene072153	0.818042	2.41E-52	-1.69E-46
MS.gene052954	MS.gene072153	0.812506	4.10E-51	-1.69E-46
MS.gene05308	MS.gene072153	0.809051	2.29E-50	-1.69E-46
MS.gene053272	MS.gene072153	-0.810541	1.10E-50	-1.69E-46
MS.gene053298	MS.gene072153	0.818454	1.94E-52	-1.69E-46
MS.gene053726	MS.gene072153	0.805327	1.41E-49	-1.69E-46
MS.gene053931	MS.gene072153	0.847039	1.49E-59	-1.69E-46
MS.gene053963	MS.gene072153	0.816296	5.95E-52	-1.69E-46
MS.gene05423	MS.gene072153	0.806169	9.37E-50	-1.69E-46
MS.gene054479	MS.gene072153	0.83543	1.69E-56	-1.69E-46
MS.gene054651	MS.gene072153	0.809171	2.16E-50	-1.69E-46
MS.gene054892	MS.gene072153	0.871297	7.61E-67	-1.69E-46
MS.gene054893	MS.gene072153	0.875439	3.08E-68	-1.69E-46
MS.gene054957	MS.gene072153	0.82771	1.35E-54	-1.69E-46
MS.gene055150	MS.gene072153	0.821387	4.15E-53	-1.69E-46
MS.gene055841	MS.gene072153	0.841406	4.85E-58	-1.69E-46
MS.gene056045	MS.gene072153	0.823788	1.15E-53	-1.69E-46
MS.gene056082	MS.gene072153	0.800383	1.48E-48	-1.69E-46
MS.gene05624	MS.gene072153	0.820561	6.43E-53	-1.69E-46
MS.gene056699	MS.gene072153	0.816314	5.90E-52	-1.69E-46
MS.gene056776	MS.gene072153	0.814447	1.53E-51	-1.69E-46
MS.gene056779	MS.gene072153	0.806217	9.16E-50	-1.69E-46
MS.gene056834	MS.gene072153	0.834124	3.59E-56	-1.69E-46
MS.gene05686	MS.gene072153	0.824094	9.72E-54	-1.69E-46
MS.gene056973	MS.gene072153	0.842688	2.22E-58	-1.69E-46
MS.gene057071	MS.gene072153	0.800331	1.52E-48	-1.69E-46
MS.gene057102	MS.gene072153	0.808556	2.92E-50	-1.69E-46
MS.gene057155	MS.gene072153	0.859745	3.34E-63	-1.69E-46
MS.gene057174	MS.gene072153	0.814573	1.44E-51	-1.69E-46
MS.gene057208	MS.gene072153	0.878968	1.83E-69	-1.69E-46
MS.gene057371	MS.gene072153	0.843971	1.01E-58	-1.69E-46
MS.gene057611	MS.gene072153	0.801642	8.18E-49	-1.69E-46
MS.gene057622	MS.gene072153	0.821504	3.90E-53	-1.69E-46
MS.gene058081	MS.gene072153	0.82151	3.89E-53	-1.69E-46
MS.gene058095	MS.gene072153	0.816047	6.76E-52	-1.69E-46
MS.gene058159	MS.gene072153	0.808672	2.76E-50	-1.69E-46
MS.gene058223	MS.gene072153	-0.81165	6.30E-51	-1.69E-46
MS.gene058279	MS.gene072153	0.833602	4.85E-56	-1.69E-46
MS.gene058429	MS.gene072153	0.818331	2.07E-52	-1.69E-46
MS.gene058520	MS.gene072153	0.80412	2.52E-49	-1.69E-46
MS.gene058592	MS.gene072153	0.802955	4.39E-49	-1.69E-46
MS.gene058769	MS.gene072153	0.8373	5.64E-57	-1.69E-46
MS.gene058781	MS.gene072153	0.822642	2.12E-53	-1.69E-46
MS.gene058783	MS.gene072153	0.808777	2.62E-50	-1.69E-46
MS.gene05878	MS.gene072153	0.800712	1.27E-48	-1.69E-46
MS.gene059338	MS.gene072153	-0.806899	6.57E-50	-1.69E-46
MS.gene05952	MS.gene072153	0.845007	5.31E-59	-1.69E-46
MS.gene05985	MS.gene072153	-0.853823	1.85E-61	-1.69E-46
MS.gene060244	MS.gene072153	0.832805	7.66E-56	-1.69E-46
MS.gene060259	MS.gene072153	0.825601	4.29E-54	-1.69E-46
MS.gene060365	MS.gene072153	0.811461	6.92E-51	-1.69E-46
MS.gene060412	MS.gene072153	0.810751	9.87E-51	-1.69E-46
MS.gene060435	MS.gene072153	0.810169	1.32E-50	-1.69E-46
MS.gene060518	MS.gene072153	0.801903	7.23E-49	-1.69E-46
MS.gene060522	MS.gene072153	0.811713	6.10E-51	-1.69E-46
MS.gene060527	MS.gene072153	0.8331	6.47E-56	-1.69E-46
MS.gene060777	MS.gene072153	0.828362	9.38E-55	-1.69E-46
MS.gene060850	MS.gene072153	0.834857	2.35E-56	-1.69E-46
MS.gene060851	MS.gene072153	0.84133	5.07E-58	-1.69E-46
MS.gene060852	MS.gene072153	0.839351	1.67E-57	-1.69E-46
MS.gene060932	MS.gene072153	0.819758	9.82E-53	-1.69E-46
MS.gene060933	MS.gene072153	0.841403	4.85E-58	-1.69E-46
MS.gene060935	MS.gene072153	0.848402	6.27E-60	-1.69E-46
MS.gene060937	MS.gene072153	0.859264	4.67E-63	-1.69E-46
MS.gene061100	MS.gene072153	0.800455	1.43E-48	-1.69E-46
MS.gene061188	MS.gene072153	0.808581	2.89E-50	-1.69E-46
MS.gene06121	MS.gene072153	0.800942	1.14E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072153.t1	MTR_8g015560	96.203	79	3	0	1	79	1	79	2.49e-49	150

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 11 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCAGTTGAGGTGGTGTCTA+TGG	0.235479	8.1:+82026459	MS.gene072153:CDS
CGTCAAGTTAGTGCTCGTTT+TGG	0.356065	8.1:+82026568	MS.gene072153:CDS
AGGAAAGAAGCTGAAAGAAA+TGG	0.356123	8.1:+82026486	MS.gene072153:CDS
CTCCTTCTTTAATTTGTGAA+TGG	0.374793	8.1:-82026398	None:intergenic
TGAAAGGTGAGATCAAGAAA+TGG	0.464102	8.1:+82026521	MS.gene072153:CDS
GAAAGGTGAGATCAAGAAAT+GGG	0.482363	8.1:+82026522	MS.gene072153:CDS
TACCATTCACAAATTAAAGA+AGG	0.518100	8.1:+82026396	MS.gene072153:CDS
ATGGATTCAAATAAGTTGAA+AGG	0.552282	8.1:+82026505	MS.gene072153:CDS
GAGGTGGTGTCTATGGAGGA+AGG	0.559344	8.1:+82026466	MS.gene072153:CDS
TGAGATCAAGAAATGGGCTA+AGG	0.607413	8.1:+82026528	MS.gene072153:CDS
AGTTGAGGTGGTGTCTATGG+AGG	0.609297	8.1:+82026462	MS.gene072153:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAGAAATCTCTATCTTTTAA+TGG	+	chr8.1:82026367-82026386	MS.gene072153:CDS	20.0%
!	TACCATTCACAAATTAAAGA+AGG	+	chr8.1:82026396-82026415	MS.gene072153:CDS	25.0%
!!	AAATCTCTATCTTTTAATGG+TGG	+	chr8.1:82026370-82026389	MS.gene072153:CDS	25.0%
!!	ATGGATTCAAATAAGTTGAA+AGG	+	chr8.1:82026505-82026524	MS.gene072153:CDS	25.0%
!!	CTCCTTCTTTAATTTGTGAA+TGG	-	chr8.1:82026401-82026420	None:intergenic	30.0%
	AGGAAAGAAGCTGAAAGAAA+TGG	+	chr8.1:82026486-82026505	MS.gene072153:CDS	35.0%
	GAAAGGTGAGATCAAGAAAT+GGG	+	chr8.1:82026522-82026541	MS.gene072153:CDS	35.0%
	TGAAAGGTGAGATCAAGAAA+TGG	+	chr8.1:82026521-82026540	MS.gene072153:CDS	35.0%
!!	TTGTTTTTCTTCAGTTGAGG+TGG	+	chr8.1:82026450-82026469	MS.gene072153:CDS	35.0%
!!!	TCGTTGTTTTTCTTCAGTTG+AGG	+	chr8.1:82026447-82026466	MS.gene072153:CDS	35.0%
!!	TGAGATCAAGAAATGGGCTA+AGG	+	chr8.1:82026528-82026547	MS.gene072153:CDS	40.0%
	TTCAGTTGAGGTGGTGTCTA+TGG	+	chr8.1:82026459-82026478	MS.gene072153:CDS	45.0%
!	CGTCAAGTTAGTGCTCGTTT+TGG	+	chr8.1:82026568-82026587	MS.gene072153:CDS	45.0%
	AGTTGAGGTGGTGTCTATGG+AGG	+	chr8.1:82026462-82026481	MS.gene072153:CDS	50.0%
	GAGGTGGTGTCTATGGAGGA+AGG	+	chr8.1:82026466-82026485	MS.gene072153:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	82026358	82026597	82026358	ID=MS.gene072153
chr8.1	mRNA	82026358	82026597	82026358	ID=MS.gene072153.t1;Parent=MS.gene072153
chr8.1	exon	82026358	82026597	82026358	ID=MS.gene072153.t1.exon1;Parent=MS.gene072153.t1
chr8.1	CDS	82026358	82026597	82026358	ID=cds.MS.gene072153.t1;Parent=MS.gene072153.t1

Gene Sequence	>MS.gene072153 ATGTCTGTGAAGAAATCTCTATCTTTTAATGGTGGAAGTACCATTCACAAATTAAAGAAGGAGAAATCTACAAAACGAAGACGTTTTGATCGTTGTTTTTCTTCAGTTGAGGTGGTGTCTATGGAGGAAGGAAAGAAGCTGAAAGAAATGGATTCAAATAAGTTGAAAGGTGAGATCAAGAAATGGGCTAAGGCTGTTGTTGCATATGCTCGTCAAGTTAGTGCTCGTTTTGGAAGCTAG
Protein sequence	>MS.gene072153.t1 MSVKKSLSFNGGSTIHKLKKEKSTKRRRFDRCFSSVEVVSMEEGKKLKEMDSNKLKGEIKKWAKAVVAYARQVSARFGS