Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81107.t1 | XP_024632480.1 | 91.3 | 207 | 17 | 1 | 1 | 206 | 1 | 207 | 2.90E-95 | 358.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81107.t1 | Q6AVN2 | 37.8 | 82 | 40 | 1 | 75 | 156 | 177 | 247 | 2.0e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81107.t1 | A0A072V812 | 91.3 | 207 | 17 | 1 | 1 | 206 | 1 | 207 | 2.1e-95 | 358.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene81107 | -0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene049385 | MS.gene81107 | 0.815842 | 7.51E-52 | -1.69E-46 |
| MS.gene049419 | MS.gene81107 | 0.871045 | 9.21E-67 | -1.69E-46 |
| MS.gene04995 | MS.gene81107 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene050287 | MS.gene81107 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene81107 | -0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene050905 | MS.gene81107 | 0.814544 | 1.46E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene81107 | -0.809125 | 2.21E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene81107 | -0.818968 | 1.49E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene81107 | -0.810876 | 9.27E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene81107 | -0.818465 | 1.93E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene81107 | -0.839694 | 1.36E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene81107 | -0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene81107 | 0.803322 | 3.68E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene81107 | -0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene81107 | 0.816836 | 4.50E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene81107 | -0.801659 | 8.11E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene81107 | -0.814073 | 1.86E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene81107 | -0.812266 | 4.62E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene81107 | -0.814063 | 1.86E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene81107 | -0.832199 | 1.08E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene81107 | -0.82123 | 4.51E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene81107 | -0.80967 | 1.69E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene81107 | -0.837015 | 6.67E-57 | -1.69E-46 |
| MS.gene057598 | MS.gene81107 | -0.828347 | 9.45E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene81107 | -0.824053 | 9.94E-54 | -1.69E-46 |
| MS.gene058355 | MS.gene81107 | -0.827425 | 1.58E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene81107 | -0.805692 | 1.18E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene81107 | -0.801452 | 8.95E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene81107 | 0.840758 | 7.17E-58 | -1.69E-46 |
| MS.gene059935 | MS.gene81107 | -0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene81107 | -0.814514 | 1.48E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene81107 | 0.821675 | 3.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81107.t1 | MTR_2g061790 | 92.766 | 235 | 11 | 2 | 1 | 234 | 1 | 230 | 2.53e-131 | 369 |
| MS.gene81107.t1 | MTR_1g095030 | 55.238 | 105 | 43 | 3 | 115 | 216 | 19 | 122 | 5.90e-26 | 98.2 |
| MS.gene81107.t1 | MTR_1g114320 | 33.775 | 151 | 93 | 2 | 75 | 225 | 166 | 309 | 4.33e-20 | 87.4 |
| MS.gene81107.t1 | MTR_4g110100 | 45.238 | 84 | 41 | 1 | 75 | 158 | 332 | 410 | 5.91e-19 | 85.1 |
| MS.gene81107.t1 | MTR_7g074170 | 35.000 | 100 | 60 | 1 | 76 | 175 | 318 | 412 | 2.04e-18 | 84.0 |
| MS.gene81107.t1 | MTR_6g079660 | 45.238 | 84 | 41 | 1 | 75 | 158 | 207 | 285 | 3.44e-18 | 82.8 |
| MS.gene81107.t1 | MTR_2g097620 | 40.426 | 94 | 47 | 2 | 75 | 168 | 162 | 246 | 4.92e-18 | 82.0 |
| MS.gene81107.t1 | MTR_1g114620 | 43.182 | 88 | 42 | 1 | 75 | 162 | 239 | 318 | 1.69e-17 | 80.5 |
| MS.gene81107.t1 | MTR_6g016350 | 54.717 | 53 | 24 | 0 | 106 | 158 | 309 | 361 | 9.70e-16 | 75.9 |
| MS.gene81107.t1 | MTR_4g064570 | 42.667 | 75 | 37 | 1 | 75 | 149 | 154 | 222 | 1.37e-15 | 75.1 |
| MS.gene81107.t1 | MTR_5g088720 | 43.243 | 74 | 36 | 1 | 76 | 149 | 174 | 241 | 1.17e-14 | 72.4 |
| MS.gene81107.t1 | MTR_5g088720 | 43.243 | 74 | 36 | 1 | 76 | 149 | 179 | 246 | 1.31e-14 | 72.0 |
| MS.gene81107.t1 | MTR_5g088720 | 43.243 | 74 | 36 | 1 | 76 | 149 | 220 | 287 | 1.66e-14 | 72.0 |
| MS.gene81107.t1 | MTR_2g007340 | 39.796 | 98 | 50 | 3 | 55 | 149 | 151 | 242 | 2.35e-14 | 71.2 |
| MS.gene81107.t1 | MTR_3g083480 | 36.585 | 82 | 41 | 1 | 75 | 156 | 215 | 285 | 4.02e-14 | 70.9 |
| MS.gene81107.t1 | MTR_3g072630 | 36.842 | 95 | 47 | 3 | 62 | 149 | 174 | 262 | 2.24e-13 | 68.6 |
| MS.gene81107.t1 | MTR_3g072630 | 36.842 | 95 | 47 | 3 | 62 | 149 | 174 | 262 | 3.03e-13 | 68.2 |
| MS.gene81107.t1 | MTR_1g014710 | 33.333 | 81 | 51 | 1 | 75 | 155 | 203 | 280 | 9.43e-13 | 66.6 |
| MS.gene81107.t1 | MTR_5g080350 | 33.654 | 104 | 62 | 2 | 76 | 179 | 168 | 264 | 1.29e-12 | 66.6 |
| MS.gene81107.t1 | MTR_3g068005 | 35.294 | 85 | 49 | 1 | 76 | 160 | 170 | 248 | 1.67e-12 | 66.2 |
| MS.gene81107.t1 | MTR_1g051105 | 35.135 | 74 | 42 | 2 | 76 | 149 | 133 | 200 | 3.73e-11 | 61.6 |
| MS.gene81107.t1 | MTR_0067s0100 | 36.986 | 73 | 40 | 1 | 77 | 149 | 165 | 231 | 7.75e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81107.t1 | AT3G60080 | 33.108 | 296 | 112 | 8 | 8 | 233 | 13 | 292 | 4.76e-28 | 108 |
| MS.gene81107.t1 | AT2G44330 | 31.138 | 167 | 87 | 5 | 1 | 158 | 1 | 148 | 6.89e-19 | 81.3 |
| MS.gene81107.t1 | AT5G01980 | 35.433 | 127 | 78 | 2 | 44 | 166 | 282 | 408 | 5.71e-16 | 76.6 |
| MS.gene81107.t1 | AT5G15820 | 42.667 | 75 | 38 | 1 | 75 | 149 | 263 | 332 | 6.92e-16 | 75.9 |
| MS.gene81107.t1 | AT3G56580 | 45.946 | 74 | 35 | 1 | 76 | 149 | 159 | 227 | 1.01e-15 | 75.1 |
| MS.gene81107.t1 | AT3G56580 | 45.946 | 74 | 35 | 1 | 76 | 149 | 159 | 227 | 1.01e-15 | 75.1 |
| MS.gene81107.t1 | AT3G56580 | 45.946 | 74 | 35 | 1 | 76 | 149 | 159 | 227 | 1.01e-15 | 75.1 |
| MS.gene81107.t1 | AT5G59550 | 45.588 | 68 | 35 | 1 | 108 | 173 | 304 | 371 | 1.40e-15 | 75.9 |
| MS.gene81107.t1 | AT3G02340 | 41.463 | 82 | 43 | 2 | 75 | 156 | 307 | 383 | 2.43e-15 | 74.7 |
| MS.gene81107.t1 | AT3G02340 | 41.463 | 82 | 43 | 2 | 75 | 156 | 307 | 383 | 2.43e-15 | 74.7 |
| MS.gene81107.t1 | AT2G40830 | 44.595 | 74 | 36 | 1 | 76 | 149 | 163 | 231 | 2.57e-15 | 74.3 |
| MS.gene81107.t1 | AT2G40830 | 44.595 | 74 | 36 | 1 | 76 | 149 | 163 | 231 | 2.57e-15 | 74.3 |
| MS.gene81107.t1 | AT2G40830 | 44.595 | 74 | 36 | 1 | 76 | 149 | 163 | 231 | 2.57e-15 | 74.3 |
| MS.gene81107.t1 | AT2G40830 | 44.595 | 74 | 36 | 1 | 76 | 149 | 163 | 231 | 2.57e-15 | 74.3 |
| MS.gene81107.t1 | AT5G08139 | 32.323 | 99 | 57 | 2 | 63 | 156 | 264 | 357 | 3.48e-15 | 74.3 |
| MS.gene81107.t1 | AT5G59550 | 34.653 | 101 | 58 | 2 | 75 | 173 | 172 | 266 | 4.17e-15 | 73.9 |
| MS.gene81107.t1 | AT1G60360 | 36.111 | 108 | 58 | 2 | 76 | 177 | 197 | 299 | 1.13e-14 | 72.4 |
| MS.gene81107.t1 | AT2G39720 | 44.595 | 74 | 37 | 1 | 76 | 149 | 173 | 242 | 1.52e-14 | 72.4 |
| MS.gene81107.t1 | AT2G39720 | 44.595 | 74 | 37 | 1 | 76 | 149 | 173 | 242 | 1.52e-14 | 72.4 |
| MS.gene81107.t1 | AT3G19950 | 36.905 | 84 | 48 | 1 | 75 | 158 | 188 | 266 | 1.90e-14 | 71.6 |
| MS.gene81107.t1 | AT3G19950 | 36.905 | 84 | 48 | 1 | 75 | 158 | 246 | 324 | 2.00e-14 | 72.0 |
| MS.gene81107.t1 | AT3G19950 | 36.905 | 84 | 48 | 1 | 75 | 158 | 246 | 324 | 2.00e-14 | 72.0 |
| MS.gene81107.t1 | AT3G46620 | 32.323 | 99 | 61 | 1 | 75 | 173 | 188 | 280 | 2.59e-14 | 71.6 |
| MS.gene81107.t1 | AT5G64920 | 47.458 | 59 | 31 | 0 | 105 | 163 | 254 | 312 | 1.41e-13 | 69.3 |
| MS.gene81107.t1 | AT3G10815 | 27.647 | 170 | 91 | 7 | 14 | 158 | 9 | 171 | 1.44e-13 | 67.4 |
| MS.gene81107.t1 | AT3G30460 | 46.939 | 49 | 26 | 0 | 104 | 152 | 93 | 141 | 1.77e-13 | 66.2 |
| MS.gene81107.t1 | AT1G55530 | 36.585 | 82 | 41 | 1 | 75 | 156 | 201 | 271 | 1.97e-13 | 68.9 |
| MS.gene81107.t1 | AT1G55530 | 36.585 | 82 | 41 | 1 | 75 | 156 | 201 | 271 | 1.97e-13 | 68.9 |
| MS.gene81107.t1 | AT3G30460 | 46.939 | 49 | 26 | 0 | 104 | 152 | 129 | 177 | 1.99e-13 | 66.6 |
| MS.gene81107.t1 | AT1G55530 | 36.585 | 82 | 41 | 1 | 75 | 156 | 168 | 238 | 2.00e-13 | 68.6 |
| MS.gene81107.t1 | AT1G68180 | 28.090 | 178 | 88 | 8 | 15 | 159 | 23 | 193 | 3.03e-13 | 67.4 |
| MS.gene81107.t1 | AT5G56340 | 31.731 | 104 | 58 | 2 | 75 | 178 | 237 | 327 | 3.57e-13 | 68.6 |
| MS.gene81107.t1 | AT5G60820 | 39.024 | 82 | 46 | 2 | 75 | 155 | 341 | 419 | 4.16e-13 | 68.2 |
| MS.gene81107.t1 | AT3G13430 | 32.941 | 85 | 47 | 1 | 75 | 159 | 202 | 276 | 1.65e-12 | 66.2 |
| MS.gene81107.t1 | AT3G13430 | 32.941 | 85 | 47 | 1 | 75 | 159 | 202 | 276 | 1.65e-12 | 66.2 |
| MS.gene81107.t1 | AT3G13430 | 32.941 | 85 | 47 | 1 | 75 | 159 | 202 | 276 | 1.65e-12 | 66.2 |
| MS.gene81107.t1 | AT3G13430 | 32.941 | 85 | 47 | 1 | 75 | 159 | 202 | 276 | 1.65e-12 | 66.2 |
| MS.gene81107.t1 | AT4G26400 | 32.099 | 81 | 44 | 1 | 77 | 157 | 221 | 290 | 4.24e-12 | 65.1 |
| MS.gene81107.t1 | AT4G26400 | 32.099 | 81 | 44 | 1 | 77 | 157 | 221 | 290 | 4.24e-12 | 65.1 |
| MS.gene81107.t1 | AT5G20910 | 28.571 | 112 | 63 | 2 | 75 | 172 | 200 | 308 | 1.88e-11 | 63.2 |
| MS.gene81107.t1 | AT4G32600 | 40.385 | 52 | 31 | 0 | 107 | 158 | 362 | 413 | 8.21e-11 | 61.6 |
| MS.gene81107.t1 | AT4G32600 | 40.385 | 52 | 31 | 0 | 107 | 158 | 362 | 413 | 8.21e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCATTCTAATGATTC+TGG | 0.212324 | 2.3:+32371657 | MS.gene81107:CDS |
| ATGAAGAATCGGCGTCGTTT+TGG | 0.271107 | 2.3:-32371209 | None:intergenic |
| GAGCTTCTTGTCCTCTTTGT+CGG | 0.339530 | 2.3:+32371475 | MS.gene81107:CDS |
| TATTGTAGGGATTGTTGTTT+CGG | 0.354989 | 2.3:-32371295 | None:intergenic |
| CTTGGCGGTGGTGGTGGTGG+TGG | 0.401395 | 2.3:+32371711 | MS.gene81107:CDS |
| GGGGCAGAGCAGAGGAGAGG+GGG | 0.405791 | 2.3:-32371142 | None:intergenic |
| CACTCATTTCCTCGAACTCA+TGG | 0.435907 | 2.3:+32371173 | MS.gene81107:CDS |
| GTTTGTGTGACGGTTATTGT+AGG | 0.444150 | 2.3:-32371309 | None:intergenic |
| CATTCTAATGATTCTGGTGG+TGG | 0.447523 | 2.3:+32371663 | MS.gene81107:CDS |
| GAACTTGGCGGTGGTGGTGG+TGG | 0.459052 | 2.3:+32371708 | MS.gene81107:CDS |
| AGGGATTGTTGTTTCGGTGC+GGG | 0.459559 | 2.3:-32371289 | None:intergenic |
| AGTGAACTTGGCGGTGGTGG+TGG | 0.459613 | 2.3:+32371705 | MS.gene81107:CDS |
| GCCGTTTGAGGGATCGAGTA+AGG | 0.460625 | 2.3:-32371340 | None:intergenic |
| CACCATGACGACGGCGATCT+CGG | 0.465312 | 2.3:+32371047 | None:intergenic |
| ACCTTACTCGATCCCTCAAA+CGG | 0.473396 | 2.3:+32371339 | MS.gene81107:CDS |
| GCATATAACGACGCCGTTTG+AGG | 0.475721 | 2.3:-32371352 | None:intergenic |
| GTTTCGGTGCGGGATTTAGC+GGG | 0.479527 | 2.3:-32371279 | None:intergenic |
| ATGCGCTGTTTGTAAAGAAA+CGG | 0.483030 | 2.3:+32371371 | MS.gene81107:CDS |
| GCTAGTGAACTTGGCGGTGG+TGG | 0.485989 | 2.3:+32371702 | MS.gene81107:CDS |
| CATATAACGACGCCGTTTGA+GGG | 0.490912 | 2.3:-32371351 | None:intergenic |
| GAGGAAATGAGTGTCGCAAT+GGG | 0.490955 | 2.3:-32371163 | None:intergenic |
| GATTCTGGTGGTGGTGAGAA+TGG | 0.501783 | 2.3:+32371672 | MS.gene81107:CDS |
| GGTGATGATGCTAGTGAACT+TGG | 0.503256 | 2.3:+32371693 | MS.gene81107:CDS |
| GATGAAGAAGATGATGTTAA+CGG | 0.506919 | 2.3:+32371531 | MS.gene81107:CDS |
| TTTGTGTGACGGTTATTGTA+GGG | 0.510319 | 2.3:-32371308 | None:intergenic |
| GTCGAAGAAAGATGAAGAAT+CGG | 0.511489 | 2.3:-32371220 | None:intergenic |
| GGAGATGGTGATGCGGTTGT+CGG | 0.516741 | 2.3:+32371569 | MS.gene81107:CDS |
| CACCGAGATCGCCGTCGTCA+TGG | 0.525308 | 2.3:-32371049 | None:intergenic |
| TCTTTGTCGGTGCGGAATTG+CGG | 0.532387 | 2.3:+32371488 | MS.gene81107:CDS |
| CGAGGAAATGAGTGTCGCAA+TGG | 0.542113 | 2.3:-32371164 | None:intergenic |
| TGTTTCGGTGCGGGATTTAG+CGG | 0.546426 | 2.3:-32371280 | None:intergenic |
| AAACACTCATGTCACATTCG+TGG | 0.553171 | 2.3:-32371101 | None:intergenic |
| TGAGTAGTAAAAGCGCGTCT+TGG | 0.555119 | 2.3:-32371251 | None:intergenic |
| TTGTGATCATCTTTATCATG+CGG | 0.559253 | 2.3:+32371425 | MS.gene81107:CDS |
| GACGACGGCGATCTCGGTGG+CGG | 0.559700 | 2.3:+32371053 | MS.gene81107:CDS |
| AAGGTGAGTCCATGAGTTCG+AGG | 0.564015 | 2.3:-32371182 | None:intergenic |
| GGTAAGAAGCGTTTGTGTGA+CGG | 0.566304 | 2.3:-32371319 | None:intergenic |
| TTGTCGGTGCGGAATTGCGG+AGG | 0.582048 | 2.3:+32371491 | MS.gene81107:CDS |
| CTGCTTCGCTTCCTCGTCAA+CGG | 0.590137 | 2.3:-32371397 | None:intergenic |
| GAAGCTCGAATCTGAAGCCA+CGG | 0.597439 | 2.3:-32371459 | None:intergenic |
| GCAATTCCGCACCGACAAAG+AGG | 0.605206 | 2.3:-32371486 | None:intergenic |
| GGAAATGAGTGTCGCAATGG+GGG | 0.611322 | 2.3:-32371161 | None:intergenic |
| TAGGGATTGTTGTTTCGGTG+CGG | 0.614475 | 2.3:-32371290 | None:intergenic |
| GATGATGCTAGTGAACTTGG+CGG | 0.622648 | 2.3:+32371696 | MS.gene81107:CDS |
| CTTCATTCTAATGATTCTGG+TGG | 0.625157 | 2.3:+32371660 | MS.gene81107:CDS |
| TCTTGTCCTCTTTGTCGGTG+CGG | 0.626689 | 2.3:+32371480 | MS.gene81107:CDS |
| TCGGTGCGGGATTTAGCGGG+AGG | 0.626805 | 2.3:-32371276 | None:intergenic |
| ACCGCCCACCACCATGACGA+CGG | 0.627386 | 2.3:+32371038 | None:intergenic |
| GATGCTAGTGAACTTGGCGG+TGG | 0.633512 | 2.3:+32371699 | MS.gene81107:CDS |
| TAACGGTGGAGATGTGATGA+GGG | 0.638867 | 2.3:+32371548 | MS.gene81107:CDS |
| TGGAGATGTGATGAGGGAGA+TGG | 0.642918 | 2.3:+32371554 | MS.gene81107:CDS |
| TTAACGGTGGAGATGTGATG+AGG | 0.643281 | 2.3:+32371547 | MS.gene81107:CDS |
| AGAAACGGTTTCCGTTGACG+AGG | 0.647530 | 2.3:+32371386 | MS.gene81107:CDS |
| GCGGTTGTCGGAGTTGTCTG+AGG | 0.659262 | 2.3:+32371581 | MS.gene81107:CDS |
| ATGCGGATTGTATTACTCCG+TGG | 0.659920 | 2.3:+32371442 | MS.gene81107:CDS |
| TGATGAGGGAGATGGTGATG+CGG | 0.664267 | 2.3:+32371562 | MS.gene81107:CDS |
| GAAGAAGATGATGTTAACGG+TGG | 0.685314 | 2.3:+32371534 | MS.gene81107:CDS |
| GCATGATAAAGATGATCACA+AGG | 0.688727 | 2.3:-32371423 | None:intergenic |
| AGGAAATGAGTGTCGCAATG+GGG | 0.690747 | 2.3:-32371162 | None:intergenic |
| CATGACGACGGCGATCTCGG+TGG | 0.712285 | 2.3:+32371050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GATGAAGAAGATGATGTTAA+CGG | + | chr2.3:32371531-32371550 | MS.gene81107:CDS | 30.0% | |
| TTGTGATCATCTTTATCATG+CGG | + | chr2.3:32371425-32371444 | MS.gene81107:CDS | 30.0% | |
| ! | TTGTCTGAGGATGATTTTTA+TGG | + | chr2.3:32371594-32371613 | MS.gene81107:CDS | 30.0% |
| !! | AGGATGATTTTTATGGATTG+AGG | + | chr2.3:32371601-32371620 | MS.gene81107:CDS | 30.0% |
| !! | TATTGTAGGGATTGTTGTTT+CGG | - | chr2.3:32371298-32371317 | None:intergenic | 30.0% |
| AACCCGAACTAAAAACATAC+TGG | + | chr2.3:32371076-32371095 | MS.gene81107:CDS | 35.0% | |
| ATGCGCTGTTTGTAAAGAAA+CGG | + | chr2.3:32371371-32371390 | MS.gene81107:CDS | 35.0% | |
| CTGCTTCATTCTAATGATTC+TGG | + | chr2.3:32371657-32371676 | MS.gene81107:CDS | 35.0% | |
| CTTCATTCTAATGATTCTGG+TGG | + | chr2.3:32371660-32371679 | MS.gene81107:CDS | 35.0% | |
| GCATGATAAAGATGATCACA+AGG | - | chr2.3:32371426-32371445 | None:intergenic | 35.0% | |
| GTCGAAGAAAGATGAAGAAT+CGG | - | chr2.3:32371223-32371242 | None:intergenic | 35.0% | |
| TTTGTGTGACGGTTATTGTA+GGG | - | chr2.3:32371311-32371330 | None:intergenic | 35.0% | |
| !!! | CACCAGTATGTTTTTAGTTC+GGG | - | chr2.3:32371081-32371100 | None:intergenic | 35.0% |
| !!! | GCACCAGTATGTTTTTAGTT+CGG | - | chr2.3:32371082-32371101 | None:intergenic | 35.0% |
| AAACACTCATGTCACATTCG+TGG | - | chr2.3:32371104-32371123 | None:intergenic | 40.0% | |
| CATTCTAATGATTCTGGTGG+TGG | + | chr2.3:32371663-32371682 | MS.gene81107:CDS | 40.0% | |
| GAAGAAGATGATGTTAACGG+TGG | + | chr2.3:32371534-32371553 | MS.gene81107:CDS | 40.0% | |
| GTTTGTGTGACGGTTATTGT+AGG | - | chr2.3:32371312-32371331 | None:intergenic | 40.0% | |
| ACCTTACTCGATCCCTCAAA+CGG | + | chr2.3:32371339-32371358 | MS.gene81107:CDS | 45.0% | |
| CACTCATTTCCTCGAACTCA+TGG | + | chr2.3:32371173-32371192 | MS.gene81107:CDS | 45.0% | |
| CATATAACGACGCCGTTTGA+GGG | - | chr2.3:32371354-32371373 | None:intergenic | 45.0% | |
| GAGCTTCTTGTCCTCTTTGT+CGG | + | chr2.3:32371475-32371494 | MS.gene81107:CDS | 45.0% | |
| GATGATGCTAGTGAACTTGG+CGG | + | chr2.3:32371696-32371715 | MS.gene81107:CDS | 45.0% | |
| TAACGGTGGAGATGTGATGA+GGG | + | chr2.3:32371548-32371567 | MS.gene81107:CDS | 45.0% | |
| TTAACGGTGGAGATGTGATG+AGG | + | chr2.3:32371547-32371566 | MS.gene81107:CDS | 45.0% | |
| ! | AGGAAATGAGTGTCGCAATG+GGG | - | chr2.3:32371165-32371184 | None:intergenic | 45.0% |
| ! | ATGAAGAATCGGCGTCGTTT+TGG | - | chr2.3:32371212-32371231 | None:intergenic | 45.0% |
| ! | ATGCGGATTGTATTACTCCG+TGG | + | chr2.3:32371442-32371461 | MS.gene81107:CDS | 45.0% |
| ! | GAGGAAATGAGTGTCGCAAT+GGG | - | chr2.3:32371166-32371185 | None:intergenic | 45.0% |
| ! | GGTGATGATGCTAGTGAACT+TGG | + | chr2.3:32371693-32371712 | MS.gene81107:CDS | 45.0% |
| ! | TGAGTAGTAAAAGCGCGTCT+TGG | - | chr2.3:32371254-32371273 | None:intergenic | 45.0% |
| !! | GGTAAGAAGCGTTTGTGTGA+CGG | - | chr2.3:32371322-32371341 | None:intergenic | 45.0% |
| !! | TAGGGATTGTTGTTTCGGTG+CGG | - | chr2.3:32371293-32371312 | None:intergenic | 45.0% |
| !! | TGAAGAATCGGCGTCGTTTT+GGG | - | chr2.3:32371211-32371230 | None:intergenic | 45.0% |
| AAGGTGAGTCCATGAGTTCG+AGG | - | chr2.3:32371185-32371204 | None:intergenic | 50.0% | |
| AGAAACGGTTTCCGTTGACG+AGG | + | chr2.3:32371386-32371405 | MS.gene81107:CDS | 50.0% | |
| GCATATAACGACGCCGTTTG+AGG | - | chr2.3:32371355-32371374 | None:intergenic | 50.0% | |
| TCTTGTCCTCTTTGTCGGTG+CGG | + | chr2.3:32371480-32371499 | MS.gene81107:CDS | 50.0% | |
| TCTTTGTCGGTGCGGAATTG+CGG | + | chr2.3:32371488-32371507 | MS.gene81107:CDS | 50.0% | |
| TGGAGATGTGATGAGGGAGA+TGG | + | chr2.3:32371554-32371573 | MS.gene81107:CDS | 50.0% | |
| ! | CGAGGAAATGAGTGTCGCAA+TGG | - | chr2.3:32371167-32371186 | None:intergenic | 50.0% |
| ! | GAAGCTCGAATCTGAAGCCA+CGG | - | chr2.3:32371462-32371481 | None:intergenic | 50.0% |
| ! | GGAAATGAGTGTCGCAATGG+GGG | - | chr2.3:32371164-32371183 | None:intergenic | 50.0% |
| ! | TGATGAGGGAGATGGTGATG+CGG | + | chr2.3:32371562-32371581 | MS.gene81107:CDS | 50.0% |
| ! | TGTTTCGGTGCGGGATTTAG+CGG | - | chr2.3:32371283-32371302 | None:intergenic | 50.0% |
| !! | AGGGATTGTTGTTTCGGTGC+GGG | - | chr2.3:32371292-32371311 | None:intergenic | 50.0% |
| !! | GATTCTGGTGGTGGTGAGAA+TGG | + | chr2.3:32371672-32371691 | MS.gene81107:CDS | 50.0% |
| !!! | TCGGCGTCGTTTTGGGAAAA+AGG | - | chr2.3:32371204-32371223 | None:intergenic | 50.0% |
| CTGCTTCGCTTCCTCGTCAA+CGG | - | chr2.3:32371400-32371419 | None:intergenic | 55.0% | |
| GATGCTAGTGAACTTGGCGG+TGG | + | chr2.3:32371699-32371718 | MS.gene81107:CDS | 55.0% | |
| GCCGTTTGAGGGATCGAGTA+AGG | - | chr2.3:32371343-32371362 | None:intergenic | 55.0% | |
| ! | GCAATTCCGCACCGACAAAG+AGG | - | chr2.3:32371489-32371508 | None:intergenic | 55.0% |
| ! | GGAGATGGTGATGCGGTTGT+CGG | + | chr2.3:32371569-32371588 | MS.gene81107:CDS | 55.0% |
| ! | GTTTCGGTGCGGGATTTAGC+GGG | - | chr2.3:32371282-32371301 | None:intergenic | 55.0% |
| GCGGTTGTCGGAGTTGTCTG+AGG | + | chr2.3:32371581-32371600 | MS.gene81107:CDS | 60.0% | |
| GCTAGTGAACTTGGCGGTGG+TGG | + | chr2.3:32371702-32371721 | MS.gene81107:CDS | 60.0% | |
| TTGTCGGTGCGGAATTGCGG+AGG | + | chr2.3:32371491-32371510 | MS.gene81107:CDS | 60.0% | |
| ! | AGTGAACTTGGCGGTGGTGG+TGG | + | chr2.3:32371705-32371724 | MS.gene81107:CDS | 60.0% |
| !! | GGTGGTGGTGGTGGTGTAGA+TGG | + | chr2.3:32371720-32371739 | MS.gene81107:CDS | 60.0% |
| ATGGGGGCAGAGCAGAGGAG+AGG | - | chr2.3:32371148-32371167 | None:intergenic | 65.0% | |
| TCGCAATGGGGGCAGAGCAG+AGG | - | chr2.3:32371153-32371172 | None:intergenic | 65.0% | |
| TCGGTGCGGGATTTAGCGGG+AGG | - | chr2.3:32371279-32371298 | None:intergenic | 65.0% | |
| TGGGGGCAGAGCAGAGGAGA+GGG | - | chr2.3:32371147-32371166 | None:intergenic | 65.0% | |
| !! | GAACTTGGCGGTGGTGGTGG+TGG | + | chr2.3:32371708-32371727 | MS.gene81107:CDS | 65.0% |
| GACGACGGCGATCTCGGTGG+CGG | + | chr2.3:32371053-32371072 | MS.gene81107:CDS | 70.0% | |
| GGGGCAGAGCAGAGGAGAGG+GGG | - | chr2.3:32371145-32371164 | None:intergenic | 70.0% | |
| GGGGGCAGAGCAGAGGAGAG+GGG | - | chr2.3:32371146-32371165 | None:intergenic | 70.0% | |
| !! | CTTGGCGGTGGTGGTGGTGG+TGG | + | chr2.3:32371711-32371730 | MS.gene81107:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 32371051 | 32371755 | 32371051 | ID=MS.gene81107 |
| chr2.3 | mRNA | 32371051 | 32371755 | 32371051 | ID=MS.gene81107.t1;Parent=MS.gene81107 |
| chr2.3 | exon | 32371051 | 32371755 | 32371051 | ID=MS.gene81107.t1.exon1;Parent=MS.gene81107.t1 |
| chr2.3 | CDS | 32371051 | 32371755 | 32371051 | ID=cds.MS.gene81107.t1;Parent=MS.gene81107.t1 |
| Gene Sequence |
| Protein sequence |
