AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72170.t1 MTR_8g097350 90.959 1095 35 5 1 1094 1 1032 0.0 1975
MS.gene72170.t1 MTR_8g097350 96.917 973 29 1 1 972 1 973 0.0 1909
MS.gene72170.t1 MTR_5g010520 62.724 1116 340 10 1 1094 1 1062 0.0 1269
MS.gene72170.t1 MTR_5g010520 64.526 950 301 8 1 928 1 936 0.0 1128
MS.gene72170.t1 MTR_0415s0020 96.933 326 10 0 546 871 16 341 0.0 622
MS.gene72170.t1 MTR_0415s0010 95.238 294 13 1 183 475 1 294 0.0 549
MS.gene72170.t1 MTR_1g100633 38.251 766 395 12 1 757 1 697 4.24e-143 449
MS.gene72170.t1 MTR_1g100633 38.251 766 395 12 1 757 1 697 6.96e-143 449
MS.gene72170.t1 MTR_1g100633 38.251 766 395 12 1 757 1 697 2.14e-142 449
MS.gene72170.t1 MTR_1g100633 70.909 55 16 0 1039 1093 798 852 1.33e-15 82.4
MS.gene72170.t1 MTR_1g062200 25.738 474 288 15 1 447 1 437 1.48e-24 112
MS.gene72170.t1 MTR_1g062200 25.738 474 288 15 1 447 1 437 1.69e-24 111
MS.gene72170.t1 MTR_1g090807 23.293 498 319 15 5 470 30 496 3.50e-16 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72170.t1 AT1G63300 45.455 1122 491 21 1 1094 1 1029 0.0 800
MS.gene72170.t1 AT5G41140 44.777 1101 474 20 1 1093 1 975 0.0 784
MS.gene72170.t1 AT5G41140 45.232 1101 476 21 1 1093 1 982 0.0 781
MS.gene72170.t1 AT5G52280 36.253 902 440 19 1 893 1 776 1.14e-137 437
MS.gene72170.t1 AT5G52280 62.712 59 22 0 1035 1093 794 852 2.37e-13 75.1
MS.gene72170.t1 AT1G22060 26.273 982 547 33 1 920 4 870 3.15e-47 186
MS.gene72170.t1 AT1G22060 52.542 59 28 0 1036 1094 1927 1985 3.45e-11 68.6
MS.gene72170.t1 AT1G22060 26.273 982 547 33 1 920 4 870 3.15e-47 186
MS.gene72170.t1 AT1G22060 52.542 59 28 0 1036 1094 1927 1985 3.45e-11 68.6

Find 180 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTCCAGTTCCTCAATTT+TGG 0.100815 4.2:+6781761 None:intergenic
TTTAGTCTGTTTGTAATTAT+TGG 0.149429 4.2:+6783477 None:intergenic
AGCATCGGCTTCTTCATATT+TGG 0.200944 4.2:-6781805 MS.gene72170:CDS
TCATGTATATTGGAAGAAAA+TGG 0.204881 4.2:-6781296 MS.gene72170:CDS
TCTCAGATCTGTCATTTCTT+TGG 0.222739 4.2:+6782085 None:intergenic
CATCAATAAGAGAATGTTTC+AGG 0.227998 4.2:+6782246 None:intergenic
TCACTAAATTTCCCATTCTT+AGG 0.251223 4.2:+6785135 None:intergenic
TTCATGATGGAAATTGTAAA+TGG 0.253945 4.2:-6785197 MS.gene72170:CDS
GCAATCTGGTGTGGATTCTT+TGG 0.281309 4.2:-6785280 MS.gene72170:CDS
TTGGTACTCTCTATAGTTCC+TGG 0.288824 4.2:-6785261 MS.gene72170:CDS
CAATGATACTTCATGTATAT+TGG 0.288904 4.2:-6781306 MS.gene72170:CDS
TTATCAAAAGCTAGTATCTT+TGG 0.299529 4.2:-6784982 MS.gene72170:CDS
GGTATTTCTGCTTCTTTCTC+TGG 0.307986 4.2:+6781083 None:intergenic
TGAACTAGTTCTTGCTGTTC+AGG 0.309083 4.2:-6783548 MS.gene72170:CDS
CCATCTTATATGCAAATTCA+TGG 0.311512 4.2:+6783227 None:intergenic
TACAAGAAAATAGTGATAAA+AGG 0.318196 4.2:-6784695 MS.gene72170:intron
GGTCACTTGATGAGCTAAAT+AGG 0.319780 4.2:-6782352 MS.gene72170:CDS
TCTATAGTTCCTGGAGATAA+TGG 0.322135 4.2:-6785252 MS.gene72170:CDS
TTCTTTCAATGATGATAATT+CGG 0.323173 4.2:+6781016 None:intergenic
CAAGGCTGAAGTTGCTGCTT+TGG 0.329744 4.2:-6783884 MS.gene72170:CDS
TGAAGCTGTTAAGTTTAATC+AGG 0.338510 4.2:-6785160 MS.gene72170:CDS
CCTCCTCTAACTTGCGGATC+TGG 0.350616 4.2:+6783041 None:intergenic
CATGTATATTGGAAGAAAAT+GGG 0.351926 4.2:-6781295 MS.gene72170:CDS
TTGCCATTACTATCCATTAC+TGG 0.360182 4.2:+6781062 None:intergenic
ATCAGAGATCATCACATTTC+CGG 0.360321 4.2:-6784023 MS.gene72170:CDS
TGCTCAGCTGGTTCAGAACT+TGG 0.368716 4.2:-6783997 MS.gene72170:CDS
CTTGATACTCCCCGAGAACT+TGG 0.369394 4.2:-6784159 MS.gene72170:CDS
TCAGAGATCATCACATTTCC+GGG 0.373245 4.2:-6784022 MS.gene72170:CDS
CCGCAAGTTAGAGGAGGAAC+TGG 0.375739 4.2:-6783035 MS.gene72170:CDS
TTCAGAACTTGGTCTGAGTA+TGG 0.384315 4.2:-6783986 MS.gene72170:CDS
AACTTAACAGCTTCATAAAC+AGG 0.386417 4.2:+6785168 None:intergenic
TCAATCCAAAATTGAGGAAC+TGG 0.391550 4.2:-6781766 MS.gene72170:CDS
TATATCTCCAGTGCTTAAAT+AGG 0.392273 4.2:+6784501 None:intergenic
AACTCAATGATAGGAGCTTA+AGG 0.401210 4.2:-6784525 MS.gene72170:CDS
AGACGATGAACAGAAAGAAT+TGG 0.403642 4.2:-6783413 MS.gene72170:CDS
GCTTTCTCTAATCTTGTAGT+TGG 0.404902 4.2:+6785225 None:intergenic
CTAAGTCAGCTTCAAATCCT+TGG 0.409289 4.2:+6783002 None:intergenic
GAACCAGATCCGCAAGTTAG+AGG 0.409504 4.2:-6783044 MS.gene72170:CDS
CTCTACATCCGCTGCCTGAT+GGG 0.410650 4.2:+6783918 None:intergenic
CTCAAGTAAGTGTGTCTCCT+TGG 0.410803 4.2:+6783363 None:intergenic
TATTTCTTAGTCCAAGTTCT+CGG 0.414133 4.2:+6784148 None:intergenic
CTCAAATTTGCAGAGGTAGA+AGG 0.414746 4.2:-6780933 MS.gene72170:CDS
ATTTCTTAGTCCAAGTTCTC+GGG 0.415269 4.2:+6784149 None:intergenic
TCTTCAGTTCATCGTTAAGA+TGG 0.416884 4.2:+6782186 None:intergenic
TCAGATGCAACAGATGTTGT+TGG 0.420026 4.2:-6782657 MS.gene72170:CDS
TGAAACACATATCCAGAATC+TGG 0.422058 4.2:-6783131 MS.gene72170:CDS
TACAATTGCTTTGTTGAAGA+AGG 0.422105 4.2:-6782384 MS.gene72170:CDS
CATTTCCGGGACTGCTCAGC+TGG 0.426590 4.2:-6784009 MS.gene72170:CDS
AGTGAGTAGCAGATCACAAT+TGG 0.427743 4.2:-6783683 MS.gene72170:CDS
TTTAATCAGGATCCTAAGAA+TGG 0.430226 4.2:-6785147 MS.gene72170:CDS
TCCCATCAAGAATTCTCATT+CGG 0.430666 4.2:-6784899 MS.gene72170:CDS
GTCTGACACATCCACCTGTC+TGG 0.433757 4.2:+6783861 None:intergenic
AGACATTTCTCCCTAAATCA+TGG 0.435733 4.2:+6783449 None:intergenic
AAAATCAAAGGAGACTGCTT+TGG 0.436264 4.2:-6781829 MS.gene72170:CDS
TTAAGCACTGGAGATATAGA+TGG 0.437350 4.2:-6784496 MS.gene72170:CDS
AGAATTGGATGAGCTTGTTA+AGG 0.441376 4.2:-6783398 MS.gene72170:CDS
TAAGTCAGCTTCAAATCCTT+GGG 0.449405 4.2:+6783003 None:intergenic
GAAGGAGCACCATTTGTTGT+AGG 0.449517 4.2:+6784114 None:intergenic
TCCAGCTCTTGTGTTTGCAT+TGG 0.461122 4.2:+6784251 None:intergenic
ACATGGAACTTCAAACTCTT+CGG 0.462481 4.2:-6783840 MS.gene72170:CDS
CTGAACCAGCTGAGCAGTCC+CGG 0.463105 4.2:+6784004 None:intergenic
CTCTCAAGATGCCCTTCCTC+GGG 0.464252 4.2:-6783947 MS.gene72170:CDS
GGATGAATTCTCAAATTCTC+TGG 0.465792 4.2:-6783086 MS.gene72170:CDS
AGTTGCTGCTTTGGCCAGAC+AGG 0.474516 4.2:-6783875 MS.gene72170:CDS
CCATGAATTTGCATATAAGA+TGG 0.474720 4.2:-6783227 MS.gene72170:CDS
TACTTCAGTCAGCGCTCTCC+TGG 0.476076 4.2:+6782811 None:intergenic
GCCAATGCAAACACAAGAGC+TGG 0.476631 4.2:-6784252 MS.gene72170:CDS
TAATTTCAGGTGCTGCAATC+TGG 0.483291 4.2:-6785294 MS.gene72170:intron
TCATGATGGAAATTGTAAAT+GGG 0.485115 4.2:-6785196 MS.gene72170:CDS
AGCATCCACCCTACAACAAA+TGG 0.485951 4.2:-6784123 MS.gene72170:CDS
GCAGATGGAGCAGCTTGCAC+TGG 0.486211 4.2:-6783275 MS.gene72170:CDS
CTGGATTGAGTGCTGATTGT+AGG 0.487970 4.2:-6784233 MS.gene72170:CDS
AGAAGCAGAAATACCAGTAA+TGG 0.488162 4.2:-6781075 MS.gene72170:CDS
TCTCTACATCCGCTGCCTGA+TGG 0.489393 4.2:+6783917 None:intergenic
TCCTCGGGAAAGTTCCCATC+AGG 0.490245 4.2:-6783932 MS.gene72170:CDS
CTTCAAAATCTTGCTGTGGA+TGG 0.491798 4.2:-6784069 MS.gene72170:CDS
AGCACGAGGAACAAGTTGGC+AGG 0.494013 4.2:-6782595 MS.gene72170:CDS
GCTCTCAAGATGCCCTTCCT+CGG 0.494210 4.2:-6783948 MS.gene72170:CDS
TTGAAGCTCTGAAGAGTGGC+TGG 0.496987 4.2:+6784086 None:intergenic
GAATGCTCTTCTCCTCCTCC+TGG 0.498944 4.2:-6783166 MS.gene72170:CDS
TTCGTTTGCGAAAAGATTTG+AGG 0.499440 4.2:+6783719 None:intergenic
AGAAATCTTAAGTTCTGACT+TGG 0.501338 4.2:-6782483 MS.gene72170:CDS
GGAGACTGCTTTGGAAGCAT+CGG 0.501587 4.2:-6781820 MS.gene72170:CDS
CAAAGCTTCCTCAGCTCGAA+TGG 0.504131 4.2:+6782940 None:intergenic
ATCAGTCAAAGCCGATTATG+AGG 0.504634 4.2:-6782723 MS.gene72170:CDS
ATCCGAATGAGAATTCTTGA+TGG 0.505562 4.2:+6784897 None:intergenic
TAACATTTGCAGAGAGGAGG+AGG 0.507929 4.2:-6784569 MS.gene72170:intron
TAAGAAGCCTCAAGAATGCT+AGG 0.509109 4.2:-6780884 MS.gene72170:CDS
AAATCAACTCAAGAAACAAT+CGG 0.509218 4.2:-6783107 MS.gene72170:CDS
ATGGTGAGATAGAGATGTAT+AGG 0.523635 4.2:-6783321 MS.gene72170:CDS
AGCCCTTCCTAGCATTCTTG+AGG 0.524438 4.2:+6780877 None:intergenic
ATCGTAAAGGAAAGCAAAAG+AGG 0.525734 4.2:-6783811 MS.gene72170:CDS
GGCTTCTTCATATTTGGAGA+AGG 0.526343 4.2:-6781799 MS.gene72170:CDS
AAGCCTCAAGAATGCTAGGA+AGG 0.527879 4.2:-6780880 MS.gene72170:CDS
AGTATGGACGGTTCAATACA+TGG 0.528292 4.2:-6783970 MS.gene72170:CDS
GGCTTCAAGAAGAATTCAAA+AGG 0.530246 4.2:-6782880 MS.gene72170:CDS
TTAATCAGGATCCTAAGAAT+GGG 0.531828 4.2:-6785146 MS.gene72170:CDS
AAGGAGCACCATTTGTTGTA+GGG 0.532047 4.2:+6784115 None:intergenic
TCGTGTGCAGAAGAGACTAC+TGG 0.533605 4.2:-6782780 MS.gene72170:CDS
ATGCAAATGAGACGGCTACC+AGG 0.533949 4.2:-6782829 MS.gene72170:CDS
TTAAGGACCTATTTAAGCAC+TGG 0.534125 4.2:-6784508 MS.gene72170:CDS
ATTCATTCAAAATGTTCAGA+TGG 0.538552 4.2:-6785526 None:intergenic
GACACATGACAAAGTTAAGC+AGG 0.540859 4.2:-6782972 MS.gene72170:CDS
GCAGATCACAATTGGAAGGT+GGG 0.541610 4.2:-6783675 MS.gene72170:CDS
GAAAGAAAGAGACAAATCAA+TGG 0.549242 4.2:-6781000 MS.gene72170:CDS
CAAGGATGAAGAGGAGAAAG+TGG 0.551905 4.2:-6782318 MS.gene72170:CDS
GATGGGAACTTTCCCGAGGA+AGG 0.551943 4.2:+6783935 None:intergenic
AAAGGAAAGCAAAAGAGGGC+AGG 0.553150 4.2:-6783806 MS.gene72170:CDS
GAGAAAGCTATAGTTCATGA+TGG 0.553319 4.2:-6785210 MS.gene72170:CDS
GGAAGTTATCAGCTTGAAAG+AGG 0.554330 4.2:-6783773 MS.gene72170:CDS
AGAACTTCAATCCAAAATTG+AGG 0.555244 4.2:-6781772 MS.gene72170:CDS
GACATTTCTCCCTAAATCAT+GGG 0.557392 4.2:+6783450 None:intergenic
TAACGATGAACTGAAGAAGA+AGG 0.562401 4.2:-6782180 MS.gene72170:CDS
GTGCTTCAAACAGGTTGTTG+CGG 0.562680 4.2:-6781390 MS.gene72170:intron
TCTTCGGAAACAAATCGTAA+AGG 0.563402 4.2:-6783824 MS.gene72170:CDS
AAGTCATTTATACCAGGAGG+AGG 0.563516 4.2:+6783154 None:intergenic
ATTGGAAGAAAATGGGGTTG+TGG 0.563520 4.2:-6781288 MS.gene72170:CDS
TTGTGGTGTCATCAGTCAAG+AGG 0.564972 4.2:-6781271 MS.gene72170:intron
AATTAACATTTGCAGAGAGG+AGG 0.568188 4.2:-6784572 MS.gene72170:intron
AGATGAGTTAGAGATGCAGA+TGG 0.572394 4.2:-6783290 MS.gene72170:CDS
GCTGATTGTAGGACATCTAG+TGG 0.573852 4.2:-6784222 MS.gene72170:CDS
AGCCTCAAGAATGCTAGGAA+GGG 0.578599 4.2:-6780879 MS.gene72170:CDS
CTCATTTGCATCAAATGTAG+TGG 0.579737 4.2:+6782841 None:intergenic
GGAAAGTTCCCATCAGGCAG+CGG 0.580002 4.2:-6783926 MS.gene72170:CDS
TGCTGCTTTGGCCAGACAGG+TGG 0.580176 4.2:-6783872 MS.gene72170:CDS
ATGTATATTGGAAGAAAATG+GGG 0.580360 4.2:-6781294 MS.gene72170:CDS
GTTTCAAAGTCATTTATACC+AGG 0.583051 4.2:+6783148 None:intergenic
ATGGGAACTTTCCCGAGGAA+GGG 0.586539 4.2:+6783936 None:intergenic
CAAAAGGCTATCAATGCAGA+TGG 0.586827 4.2:-6782864 MS.gene72170:CDS
GATGCATCTCAAGGATGAAG+AGG 0.587248 4.2:-6782327 MS.gene72170:CDS
GAGCACCATTTGTTGTAGGG+TGG 0.591831 4.2:+6784118 None:intergenic
ATACCAGTAATGGATAGTAA+TGG 0.592797 4.2:-6781065 MS.gene72170:CDS
TGAGGAACTGGAGGACAAAG+TGG 0.595036 4.2:-6781754 MS.gene72170:CDS
CATTCAAAATGTTCAGATGG+AGG 0.595398 4.2:-6785523 None:intergenic
CTGGTTCTCAAGAGACTCGA+TGG 0.595679 4.2:+6783060 None:intergenic
CCAGTTCCTCCTCTAACTTG+CGG 0.595754 4.2:+6783035 None:intergenic
GCAAAGAGCCATTCGAGCTG+AGG 0.597598 4.2:-6782948 MS.gene72170:CDS
AGCAGATCACAATTGGAAGG+TGG 0.598653 4.2:-6783676 MS.gene72170:CDS
TCCGAATGAGAATTCTTGAT+GGG 0.599669 4.2:+6784898 None:intergenic
GAAGAGTGGCTGGTGACTGA+AGG 0.602498 4.2:+6784096 None:intergenic
AGAGCTTCAAAATCTTGCTG+TGG 0.602851 4.2:-6784073 MS.gene72170:CDS
ATCCAAAATTGAGGAACTGG+AGG 0.603562 4.2:-6781763 MS.gene72170:CDS
ATCAAGTGCAGAGCTTCCAT+CGG 0.604740 4.2:+6784176 None:intergenic
ATTACAATGTCAAGTTCCGA+TGG 0.606268 4.2:-6784192 MS.gene72170:CDS
AAATAGGATGATGCATCTCA+AGG 0.610535 4.2:-6782336 MS.gene72170:CDS
ACAGGACCTGATAAAATCAA+AGG 0.611635 4.2:-6781841 MS.gene72170:intron
CTGTTGCATCTGAACTGTCA+TGG 0.612030 4.2:+6782667 None:intergenic
TACATTTGATGCAAATGAGA+CGG 0.612659 4.2:-6782837 MS.gene72170:CDS
GCACGAGGAACAAGTTGGCA+GGG 0.612830 4.2:-6782594 MS.gene72170:CDS
TCAGAGCATTGCTTTGCCAA+AGG 0.613432 4.2:-6781721 MS.gene72170:intron
CAGATCACAATTGGAAGGTG+GGG 0.613615 4.2:-6783674 MS.gene72170:CDS
TCAGGTGCTGCAATCTGGTG+TGG 0.614625 4.2:-6785289 MS.gene72170:intron
GAACTTGGTCTGAGTATGGA+CGG 0.616193 4.2:-6783982 MS.gene72170:CDS
ACTTATGAAGAAATCACTTG+AGG 0.632005 4.2:-6782459 MS.gene72170:CDS
TCAAAGTCATTTATACCAGG+AGG 0.633961 4.2:+6783151 None:intergenic
TTTCCATCTCACTCTCACTC+AGG 0.635068 4.2:-6785462 MS.gene72170:intron
GTAATGGATAGTAATGGCAA+TGG 0.635117 4.2:-6781059 MS.gene72170:CDS
ACAGGTGGATGTGTCAGACA+TGG 0.636412 4.2:-6783857 MS.gene72170:CDS
ACAAGAATTGAATCACGAGA+AGG 0.636953 4.2:-6783623 MS.gene72170:CDS
GTACCTGAGTGAGAGTGAGA+TGG 0.637352 4.2:+6785459 None:intergenic
AGTAGCAGATCACAATTGGA+AGG 0.637940 4.2:-6783679 MS.gene72170:CDS
TCGTAAAGGAAAGCAAAAGA+GGG 0.638358 4.2:-6783810 MS.gene72170:CDS
TTTCTTAGTCCAAGTTCTCG+GGG 0.640293 4.2:+6784150 None:intergenic
TAAGGATCAAAGCAGTGCCA+AGG 0.648474 4.2:-6783380 MS.gene72170:CDS
CCAGATCCGCAAGTTAGAGG+AGG 0.652701 4.2:-6783041 MS.gene72170:CDS
ATTACAGTTAAATAAGACAC+AGG 0.657648 4.2:-6783581 MS.gene72170:CDS
ATTCGGTTAAAACGTTGCTG+AGG 0.663921 4.2:+6781033 None:intergenic
AATGAGTCTCAAATTTGCAG+AGG 0.664150 4.2:-6780940 MS.gene72170:CDS
AAGAGGGCAGGAGCTCACAA+AGG 0.665046 4.2:-6783794 MS.gene72170:CDS
TGTTGAAGAAGGAAGCAGAA+CGG 0.665549 4.2:-6782373 MS.gene72170:CDS
GCCTGATGGGAACTTTCCCG+AGG 0.673014 4.2:+6783931 None:intergenic
AAGGATGAAGAGGAGAAAGT+GGG 0.675953 4.2:-6782317 MS.gene72170:CDS
GAACTGGAGAAACAAGCCCA+AGG 0.679568 4.2:-6783019 MS.gene72170:CDS
TCAAACACTAACATGCAAGA+CGG 0.686206 4.2:+6784873 None:intergenic
GGAACTGGAGGACAAAGTGG+AGG 0.698428 4.2:-6781751 MS.gene72170:CDS
TGAGAATGAAAAGCTTACAG+TGG 0.700759 4.2:-6782540 MS.gene72170:CDS
TCTGCTCTAACATTGCATCG+AGG 0.707967 4.2:+6783524 None:intergenic
TGTGCAGAAGAGACTACTGG+AGG 0.721029 4.2:-6782777 MS.gene72170:CDS
AGTTGGCAGGGATTTCTCCG+AGG 0.728439 4.2:-6782582 MS.gene72170:CDS
AAAATGCTAATACTGCAGAG+AGG 0.734559 4.2:-6782901 MS.gene72170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAACATAATTTTAACAAT+GGG + chr4.2:6782072-6782091 None:intergenic 15.0%
!!! TTATTATTTTGTGATTTCAA+CGG - chr4.2:6781284-6781303 MS.gene72170:CDS 15.0%
!!! TTCAAACATAATTTTAACAA+TGG + chr4.2:6782073-6782092 None:intergenic 15.0%
!! ACTAATGTTTGTATAATTTC+AGG - chr4.2:6781083-6781102 MS.gene72170:CDS 20.0%
!! ATATATATATATGTCTTGCT+TGG - chr4.2:6784889-6784908 MS.gene72170:CDS 20.0%
!! CAAAATTTCAACAATTTGAA+GGG + chr4.2:6781568-6781587 None:intergenic 20.0%
!! GTTATTGAATGGTTTATTTA+TGG - chr4.2:6785250-6785269 MS.gene72170:CDS 20.0%
!! TAAGACAAATTATAAATGAC+AGG + chr4.2:6784824-6784843 None:intergenic 20.0%
!! TACAAGAAAATAGTGATAAA+AGG - chr4.2:6781695-6781714 MS.gene72170:intron 20.0%
!! TACAATAATGAATAATTCCT+TGG + chr4.2:6781965-6781984 None:intergenic 20.0%
!! TTCTTTCAATGATGATAATT+CGG + chr4.2:6785377-6785396 None:intergenic 20.0%
!! TTTAGTCTGTTTGTAATTAT+TGG + chr4.2:6782916-6782935 None:intergenic 20.0%
!!! AATGATGAACAATTTTGAAT+TGG + chr4.2:6781027-6781046 None:intergenic 20.0%
!!! TGTCATTTATAATTTGTCTT+AGG - chr4.2:6784823-6784842 MS.gene72170:intron 20.0%
! AAATCAACTCAAGAAACAAT+CGG - chr4.2:6783283-6783302 MS.gene72170:CDS 25.0%
! AAATTTATCAGTGTCACAAT+TGG + chr4.2:6785220-6785239 None:intergenic 25.0%
! AATGTTAGAGCAGAAAAATA+AGG - chr4.2:6782875-6782894 MS.gene72170:CDS 25.0%
! AGAGAAAATAAAAATGCTTG+AGG - chr4.2:6784327-6784346 MS.gene72170:intron 25.0%
! ATGTATATTGGAAGAAAATG+GGG - chr4.2:6785096-6785115 MS.gene72170:intron 25.0%
! ATTACAGTTAAATAAGACAC+AGG - chr4.2:6782809-6782828 MS.gene72170:CDS 25.0%
! CAAAATCTATATCCAGAAAA+GGG + chr4.2:6781751-6781770 None:intergenic 25.0%
! CAATGATACTTCATGTATAT+TGG - chr4.2:6785084-6785103 MS.gene72170:intron 25.0%
! CATGTATATTGGAAGAAAAT+GGG - chr4.2:6785095-6785114 MS.gene72170:intron 25.0%
! CCAAAATTTCAACAATTTGA+AGG + chr4.2:6781569-6781588 None:intergenic 25.0%
! CTAGATGAAAATATCTATAG+AGG + chr4.2:6784425-6784444 None:intergenic 25.0%
! GCATATTTATTGCAGATATA+TGG + chr4.2:6784972-6784991 None:intergenic 25.0%
! TCAAAATCTATATCCAGAAA+AGG + chr4.2:6781752-6781771 None:intergenic 25.0%
! TCATGTATATTGGAAGAAAA+TGG - chr4.2:6785094-6785113 MS.gene72170:intron 25.0%
! TTATCAAAAGCTAGTATCTT+TGG - chr4.2:6781408-6781427 MS.gene72170:intron 25.0%
! TTATCAAGCATATTTCTCAA+AGG + chr4.2:6784389-6784408 None:intergenic 25.0%
! TTGATTGTGAATTTGTGATA+TGG - chr4.2:6781359-6781378 MS.gene72170:CDS 25.0%
!! AAATAGTGATAAAAGGTATG+TGG - chr4.2:6781702-6781721 MS.gene72170:intron 25.0%
!! AATAGTGATAAAAGGTATGT+GGG - chr4.2:6781703-6781722 MS.gene72170:intron 25.0%
!! ATTCAGTTTTACCTCATAAT+CGG + chr4.2:6783681-6783700 None:intergenic 25.0%
!! CCTTCAAATTGTTGAAATTT+TGG - chr4.2:6781566-6781585 MS.gene72170:intron 25.0%
!! GATTCTTTTAAATACTCGAA+AGG - chr4.2:6783961-6783980 MS.gene72170:CDS 25.0%
!! GGTAAATTTTCAAATCCTTT+TGG - chr4.2:6784348-6784367 MS.gene72170:intron 25.0%
!! TATTTGTTCTATTTTGCCTA+GGG - chr4.2:6781384-6781403 MS.gene72170:intron 25.0%
!! TCATGATGGAAATTGTAAAT+GGG - chr4.2:6781194-6781213 MS.gene72170:intron 25.0%
!! TTATTTGTTCTATTTTGCCT+AGG - chr4.2:6781383-6781402 MS.gene72170:intron 25.0%
!! TTCATGATGGAAATTGTAAA+TGG - chr4.2:6781193-6781212 MS.gene72170:intron 25.0%
!! TTTTTCTTTCTAGATTTCAC+AGG - chr4.2:6782107-6782126 MS.gene72170:CDS 25.0%
!!! AAGGTTTTATCATGAATTGT+TGG - chr4.2:6784922-6784941 MS.gene72170:CDS 25.0%
!!! ACTTAAGTTAGTTCTATCAA+AGG + chr4.2:6784478-6784497 None:intergenic 25.0%
!!! AGTATTAGCATTTTTAAGTC+TGG + chr4.2:6783483-6783502 None:intergenic 25.0%
!!! AGTTCTGATTTTTTGCTAAA+TGG - chr4.2:6781652-6781671 MS.gene72170:intron 25.0%
!!! CTTAAGTTAGTTCTATCAAA+GGG + chr4.2:6784477-6784496 None:intergenic 25.0%
!!! GCAACGATTGATAATATTTT+TGG - chr4.2:6784845-6784864 MS.gene72170:intron 25.0%
!!! TCTTTTTGTTGTTGACTTTT+TGG - chr4.2:6781314-6781333 MS.gene72170:CDS 25.0%
!!! TTTCTTATTTTCAAGTTGCA+TGG + chr4.2:6783774-6783793 None:intergenic 25.0%
AAATGTGTTCTTAATGCCAT+AGG + chr4.2:6785186-6785205 None:intergenic 30.0%
AACTTAACAGCTTCATAAAC+AGG + chr4.2:6781225-6781244 None:intergenic 30.0%
AATGTGTTCTTAATGCCATA+GGG + chr4.2:6785185-6785204 None:intergenic 30.0%
ACTAAAAACTCCCATGATTT+AGG - chr4.2:6782930-6782949 MS.gene72170:CDS 30.0%
ACTTATGAAGAAATCACTTG+AGG - chr4.2:6783931-6783950 MS.gene72170:CDS 30.0%
AGAACTTCAATCCAAAATTG+AGG - chr4.2:6784618-6784637 MS.gene72170:intron 30.0%
AGAATGATGAAGAAATGTGA+AGG + chr4.2:6780964-6780983 None:intergenic 30.0%
CATAAAAACAGTTGAGTATG+AGG + chr4.2:6781780-6781799 None:intergenic 30.0%
CATCAATAAGAGAATGTTTC+AGG + chr4.2:6784147-6784166 None:intergenic 30.0%
CCAAACAAAAACTCAATGAT+AGG - chr4.2:6781856-6781875 MS.gene72170:intron 30.0%
CCATCTTATATGCAAATTCA+TGG + chr4.2:6783166-6783185 None:intergenic 30.0%
CCATGAATTTGCATATAAGA+TGG - chr4.2:6783163-6783182 MS.gene72170:CDS 30.0%
CTAAAAACTCCCATGATTTA+GGG - chr4.2:6782931-6782950 MS.gene72170:CDS 30.0%
CTTACTTGAGCAAAAAATCA+CGG - chr4.2:6783040-6783059 MS.gene72170:CDS 30.0%
GAAAGAAAGAGACAAATCAA+TGG - chr4.2:6785390-6785409 MS.gene72170:intron 30.0%
GTTAATTAACATTTGCAGAG+AGG - chr4.2:6781815-6781834 MS.gene72170:CDS 30.0%
GTTTCAAAGTCATTTATACC+AGG + chr4.2:6783245-6783264 None:intergenic 30.0%
TACATTTGATGCAAATGAGA+CGG - chr4.2:6783553-6783572 MS.gene72170:CDS 30.0%
TATATCTCCAGTGCTTAAAT+AGG + chr4.2:6781892-6781911 None:intergenic 30.0%
TATTTCTTAGTCCAAGTTCT+CGG + chr4.2:6782245-6782264 None:intergenic 30.0%
TCACTAAATTTCCCATTCTT+AGG + chr4.2:6781258-6781277 None:intergenic 30.0%
TGAAGCTGTTAAGTTTAATC+AGG - chr4.2:6781230-6781249 MS.gene72170:intron 30.0%
TGTACAAATTGGTATACCTT+TGG + chr4.2:6784688-6784707 None:intergenic 30.0%
TGTAGAGAATGAAAAACTCA+AGG - chr4.2:6782488-6782507 MS.gene72170:CDS 30.0%
TGTGAACTGAAGTTATTGAA+TGG - chr4.2:6785239-6785258 MS.gene72170:CDS 30.0%
TTAACAATGGGAATAGAAGA+AGG + chr4.2:6782060-6782079 None:intergenic 30.0%
TTAATCAGGATCCTAAGAAT+GGG - chr4.2:6781244-6781263 MS.gene72170:intron 30.0%
TTTAATCAGGATCCTAAGAA+TGG - chr4.2:6781243-6781262 MS.gene72170:intron 30.0%
! AGAAATCTTAAGTTCTGACT+TGG - chr4.2:6783907-6783926 MS.gene72170:CDS 30.0%
! AGTTTTACTACTACAAGTGA+CGG - chr4.2:6785028-6785047 MS.gene72170:intron 30.0%
! ATAGTGATAAAAGGTATGTG+GGG - chr4.2:6781704-6781723 MS.gene72170:intron 30.0%
! CCTATCATTGAGTTTTTGTT+TGG + chr4.2:6781859-6781878 None:intergenic 30.0%
! TACAATTGCTTTGTTGAAGA+AGG - chr4.2:6784006-6784025 MS.gene72170:CDS 30.0%
! TGAAAATAAGAAAAAGCACG+AGG - chr4.2:6783781-6783800 MS.gene72170:CDS 30.0%
! TTGATTATTTGACCCTTTTC+TGG - chr4.2:6781736-6781755 MS.gene72170:CDS 30.0%
!! AAAGTGATTCTTCTGAAGTA+AGG - chr4.2:6781925-6781944 MS.gene72170:intron 30.0%
!! ATACCAGTAATGGATAGTAA+TGG - chr4.2:6785325-6785344 MS.gene72170:intron 30.0%
!! CAAAATGATTTGCTTATGAC+AGG - chr4.2:6784531-6784550 MS.gene72170:CDS 30.0%
!!! AATGGTTTTAGTCTCAATGT+AGG + chr4.2:6784248-6784267 None:intergenic 30.0%
!!! ACTTTTTTGGTTAGTTGGAA+TGG + chr4.2:6784266-6784285 None:intergenic 30.0%
!!! GAAGAATTGAAGCACTTTTT+TGG + chr4.2:6784279-6784298 None:intergenic 30.0%
!!! GGACTATGAAATTTTGAAAC+AGG - chr4.2:6783136-6783155 MS.gene72170:CDS 30.0%
!!! TGATTTTTTGCTAAATGGAC+AGG - chr4.2:6781657-6781676 MS.gene72170:intron 30.0%
AAAATCAAAGGAGACTGCTT+TGG - chr4.2:6784561-6784580 MS.gene72170:intron 35.0%
AAAATGCTAATACTGCAGAG+AGG - chr4.2:6783489-6783508 MS.gene72170:CDS 35.0%
AAATAGGATGATGCATCTCA+AGG - chr4.2:6784054-6784073 MS.gene72170:CDS 35.0%
AACTCAATGATAGGAGCTTA+AGG - chr4.2:6781865-6781884 MS.gene72170:intron 35.0%
AATGAGTCTCAAATTTGCAG+AGG - chr4.2:6785450-6785469 MS.gene72170:intron 35.0%
AATGCCATAGGGAAGAAAAA+AGG + chr4.2:6785174-6785193 None:intergenic 35.0%
AATTAACATTTGCAGAGAGG+AGG - chr4.2:6781818-6781837 MS.gene72170:CDS 35.0%
ACAAGAATTGAATCACGAGA+AGG - chr4.2:6782767-6782786 MS.gene72170:CDS 35.0%
ACAGGACCTGATAAAATCAA+AGG - chr4.2:6784549-6784568 MS.gene72170:CDS 35.0%
ACATGGAACTTCAAACTCTT+CGG - chr4.2:6782550-6782569 MS.gene72170:CDS 35.0%
AGAAGCAGAAATACCAGTAA+TGG - chr4.2:6785315-6785334 MS.gene72170:intron 35.0%
AGACATTTCTCCCTAAATCA+TGG + chr4.2:6782944-6782963 None:intergenic 35.0%
AGACGATGAACAGAAAGAAT+TGG - chr4.2:6782977-6782996 MS.gene72170:CDS 35.0%
ATCAGAGATCATCACATTTC+CGG - chr4.2:6782367-6782386 MS.gene72170:CDS 35.0%
ATCCGAATGAGAATTCTTGA+TGG + chr4.2:6781496-6781515 None:intergenic 35.0%
ATCGTAAAGGAAAGCAAAAG+AGG - chr4.2:6782579-6782598 MS.gene72170:CDS 35.0%
ATGCCATAGGGAAGAAAAAA+GGG + chr4.2:6785173-6785192 None:intergenic 35.0%
ATGGTGAGATAGAGATGTAT+AGG - chr4.2:6783069-6783088 MS.gene72170:CDS 35.0%
ATTACAATGTCAAGTTCCGA+TGG - chr4.2:6782198-6782217 MS.gene72170:CDS 35.0%
ATTTCTTAGTCCAAGTTCTC+GGG + chr4.2:6782244-6782263 None:intergenic 35.0%
CAAAAAATCACGGATCTCTA+TGG - chr4.2:6783050-6783069 MS.gene72170:CDS 35.0%
CATTGTTATGTGCTTCAAAC+AGG - chr4.2:6784991-6785010 MS.gene72170:intron 35.0%
CTCATTTGCATCAAATGTAG+TGG + chr4.2:6783552-6783571 None:intergenic 35.0%
CTTGCTTGGTATCTTGATTA+AGG - chr4.2:6784903-6784922 MS.gene72170:CDS 35.0%
GAAGTAAGGTTTCACTCATT+GGG - chr4.2:6781939-6781958 MS.gene72170:intron 35.0%
GACATTTCTCCCTAAATCAT+GGG + chr4.2:6782943-6782962 None:intergenic 35.0%
GAGAAAGCTATAGTTCATGA+TGG - chr4.2:6781180-6781199 MS.gene72170:intron 35.0%
GCTTTCTCTAATCTTGTAGT+TGG + chr4.2:6781168-6781187 None:intergenic 35.0%
GGATGAATTCTCAAATTCTC+TGG - chr4.2:6783304-6783323 MS.gene72170:CDS 35.0%
GGCTTCAAGAAGAATTCAAA+AGG - chr4.2:6783510-6783529 MS.gene72170:CDS 35.0%
TAACGATGAACTGAAGAAGA+AGG - chr4.2:6784210-6784229 MS.gene72170:CDS 35.0%
TAAGTCAGCTTCAAATCCTT+GGG + chr4.2:6783390-6783409 None:intergenic 35.0%
TATCAGTCATCAATGCACTT+TGG + chr4.2:6784774-6784793 None:intergenic 35.0%
TCAAACACTAACATGCAAGA+CGG + chr4.2:6781520-6781539 None:intergenic 35.0%
TCAAAGTCATTTATACCAGG+AGG + chr4.2:6783242-6783261 None:intergenic 35.0%
TCAATCCAAAATTGAGGAAC+TGG - chr4.2:6784624-6784643 MS.gene72170:intron 35.0%
TCCCATCAAGAATTCTCATT+CGG - chr4.2:6781491-6781510 MS.gene72170:intron 35.0%
TCCGAATGAGAATTCTTGAT+GGG + chr4.2:6781495-6781514 None:intergenic 35.0%
TCGTAAAGGAAAGCAAAAGA+GGG - chr4.2:6782580-6782599 MS.gene72170:CDS 35.0%
TCTATAGTTCCTGGAGATAA+TGG - chr4.2:6781138-6781157 MS.gene72170:intron 35.0%
TCTTCAGTTCATCGTTAAGA+TGG + chr4.2:6784207-6784226 None:intergenic 35.0%
TCTTCGGAAACAAATCGTAA+AGG - chr4.2:6782566-6782585 MS.gene72170:CDS 35.0%
TGAAACACATATCCAGAATC+TGG - chr4.2:6783259-6783278 MS.gene72170:CDS 35.0%
TGAAGTAAGGTTTCACTCAT+TGG - chr4.2:6781938-6781957 MS.gene72170:intron 35.0%
TGAGAATGAAAAGCTTACAG+TGG - chr4.2:6783850-6783869 MS.gene72170:CDS 35.0%
TTAAGGACCTATTTAAGCAC+TGG - chr4.2:6781882-6781901 MS.gene72170:intron 35.0%
TTCGTTTGCGAAAAGATTTG+AGG + chr4.2:6782674-6782693 None:intergenic 35.0%
TTGCCATTACTATCCATTAC+TGG + chr4.2:6785331-6785350 None:intergenic 35.0%
! AAGTGTTGCGATGTACAAAT+TGG + chr4.2:6784699-6784718 None:intergenic 35.0%
! CAAATCTTTTCGCAAACGAA+GGG - chr4.2:6782674-6782693 MS.gene72170:CDS 35.0%
! TATGGATCATTTTCTGTCCA+TGG - chr4.2:6785268-6785287 MS.gene72170:CDS 35.0%
! TCAAATCTTTTCGCAAACGA+AGG - chr4.2:6782673-6782692 MS.gene72170:CDS 35.0%
! TCTCAGATCTGTCATTTCTT+TGG + chr4.2:6784308-6784327 None:intergenic 35.0%
! TTTTAGCAACTGAATCTCCT+CGG + chr4.2:6783828-6783847 None:intergenic 35.0%
!! AGAATTGGATGAGCTTGTTA+AGG - chr4.2:6782992-6783011 MS.gene72170:CDS 35.0%
!! CAGTCTCCTTTGATTTTATC+AGG + chr4.2:6784558-6784577 None:intergenic 35.0%
!! GTAATGGATAGTAATGGCAA+TGG - chr4.2:6785331-6785350 MS.gene72170:intron 35.0%
!! TTAAGCACTGGAGATATAGA+TGG - chr4.2:6781894-6781913 MS.gene72170:intron 35.0%
!!! ACTAGCTTTTGATAATCCCT+AGG + chr4.2:6781403-6781422 None:intergenic 35.0%
!!! GAAGCACTTTTTTGGTTAGT+TGG + chr4.2:6784271-6784290 None:intergenic 35.0%
!!! GACAACTTTTGCTCTAAGAA+AGG + chr4.2:6782027-6782046 None:intergenic 35.0%
!!! TCAAATCCTTTTGGTTTGAG+CGG - chr4.2:6784357-6784376 MS.gene72170:intron 35.0%
!!! TGAGTTGATTTTCCAGATTC+TGG + chr4.2:6783274-6783293 None:intergenic 35.0%
!!! TGTCATGGCATCTTTTTTGT+TGG + chr4.2:6783711-6783730 None:intergenic 35.0%
AAGGATGAAGAGGAGAAAGT+GGG - chr4.2:6784073-6784092 MS.gene72170:CDS 40.0%
AAGTCATTTATACCAGGAGG+AGG + chr4.2:6783239-6783258 None:intergenic 40.0%
AGAGCTTCAAAATCTTGCTG+TGG - chr4.2:6782317-6782336 MS.gene72170:CDS 40.0%
AGATGAGTTAGAGATGCAGA+TGG - chr4.2:6783100-6783119 MS.gene72170:CDS 40.0%
AGTAGCAGATCACAATTGGA+AGG - chr4.2:6782711-6782730 MS.gene72170:CDS 40.0%
AGTATGGACGGTTCAATACA+TGG - chr4.2:6782420-6782439 MS.gene72170:CDS 40.0%
AGTGAGTAGCAGATCACAAT+TGG - chr4.2:6782707-6782726 MS.gene72170:CDS 40.0%
ATCAGTCAAAGCCGATTATG+AGG - chr4.2:6783667-6783686 MS.gene72170:CDS 40.0%
ATCCAAAATTGAGGAACTGG+AGG - chr4.2:6784627-6784646 MS.gene72170:intron 40.0%
ATTCGGTTAAAACGTTGCTG+AGG + chr4.2:6785360-6785379 None:intergenic 40.0%
ATTGGAAGAAAATGGGGTTG+TGG - chr4.2:6785102-6785121 MS.gene72170:intron 40.0%
CAAAAGGCTATCAATGCAGA+TGG - chr4.2:6783526-6783545 MS.gene72170:CDS 40.0%
CTAAGTCAGCTTCAAATCCT+TGG + chr4.2:6783391-6783410 None:intergenic 40.0%
CTCAAATTTGCAGAGGTAGA+AGG - chr4.2:6785457-6785476 MS.gene72170:intron 40.0%
GACACATGACAAAGTTAAGC+AGG - chr4.2:6783418-6783437 MS.gene72170:CDS 40.0%
GGAAGTTATCAGCTTGAAAG+AGG - chr4.2:6782617-6782636 MS.gene72170:CDS 40.0%
GGCTTCTTCATATTTGGAGA+AGG - chr4.2:6784591-6784610 MS.gene72170:intron 40.0%
GGTCACTTGATGAGCTAAAT+AGG - chr4.2:6784038-6784057 MS.gene72170:CDS 40.0%
TAAGAAGCCTCAAGAATGCT+AGG - chr4.2:6785506-6785525 MS.gene72170:CDS 40.0%
TCAGAGATCATCACATTTCC+GGG - chr4.2:6782368-6782387 MS.gene72170:CDS 40.0%
TCAGATGCAACAGATGTTGT+TGG - chr4.2:6783733-6783752 MS.gene72170:CDS 40.0%
TGTTGAAGAAGGAAGCAGAA+CGG - chr4.2:6784017-6784036 MS.gene72170:CDS 40.0%
TTCAGAACTTGGTCTGAGTA+TGG - chr4.2:6782404-6782423 MS.gene72170:CDS 40.0%
TTGGTACTCTCTATAGTTCC+TGG - chr4.2:6781129-6781148 MS.gene72170:intron 40.0%
TTTCTTAGTCCAAGTTCTCG+GGG + chr4.2:6782243-6782262 None:intergenic 40.0%
! AAAAAGCACGAGGAACAAGT+TGG - chr4.2:6783791-6783810 MS.gene72170:CDS 40.0%
! CTTCAAAATCTTGCTGTGGA+TGG - chr4.2:6782321-6782340 MS.gene72170:CDS 40.0%
! GAATTGGTCTCGAGATAAGT+TGG + chr4.2:6781011-6781030 None:intergenic 40.0%
! GGTATTTCTGCTTCTTTCTC+TGG + chr4.2:6785310-6785329 None:intergenic 40.0%
! TAATTTCAGGTGCTGCAATC+TGG - chr4.2:6781096-6781115 MS.gene72170:CDS 40.0%
!! AAGGAGCACCATTTGTTGTA+GGG + chr4.2:6782278-6782297 None:intergenic 40.0%
!! AGCATCGGCTTCTTCATATT+TGG - chr4.2:6784585-6784604 MS.gene72170:intron 40.0%
!! TGAACTAGTTCTTGCTGTTC+AGG - chr4.2:6782842-6782861 MS.gene72170:CDS 40.0%
!!! GATTTTGAAGCTCTGAAGAG+TGG + chr4.2:6782311-6782330 None:intergenic 40.0%
!!! GTTGGTTTTCCATTATCTCC+AGG + chr4.2:6781150-6781169 None:intergenic 40.0%
AAAGGAAAGCAAAAGAGGGC+AGG - chr4.2:6782584-6782603 MS.gene72170:CDS 45.0%
AAGCCTCAAGAATGCTAGGA+AGG - chr4.2:6785510-6785529 MS.gene72170:CDS 45.0%
ACCTATCCGCTCAAACCAAA+AGG + chr4.2:6784366-6784385 None:intergenic 45.0%
AGCAGATCACAATTGGAAGG+TGG - chr4.2:6782714-6782733 MS.gene72170:CDS 45.0%
AGCATCCACCCTACAACAAA+TGG - chr4.2:6782267-6782286 MS.gene72170:CDS 45.0%
AGCCTCAAGAATGCTAGGAA+GGG - chr4.2:6785511-6785530 MS.gene72170:CDS 45.0%
ATCAAGTGCAGAGCTTCCAT+CGG + chr4.2:6782217-6782236 None:intergenic 45.0%
ATCTCACTCTCACTCAGGTA+CGG - chr4.2:6780933-6780952 MS.gene72170:CDS 45.0%
CAAGGATGAAGAGGAGAAAG+TGG - chr4.2:6784072-6784091 MS.gene72170:CDS 45.0%
CAGATCACAATTGGAAGGTG+GGG - chr4.2:6782716-6782735 MS.gene72170:CDS 45.0%
CAGTCATCAATGCACTTTGG+TGG + chr4.2:6784771-6784790 None:intergenic 45.0%
CTCAAGTAAGTGTGTCTCCT+TGG + chr4.2:6783030-6783049 None:intergenic 45.0%
CTGTTGCATCTGAACTGTCA+TGG + chr4.2:6783726-6783745 None:intergenic 45.0%
GAACTTGGTCTGAGTATGGA+CGG - chr4.2:6782408-6782427 MS.gene72170:CDS 45.0%
GAGATCTGACAGTTGAGTGA+TGG - chr4.2:6784500-6784519 MS.gene72170:CDS 45.0%
GATGCATCTCAAGGATGAAG+AGG - chr4.2:6784063-6784082 MS.gene72170:CDS 45.0%
GCAATCTGGTGTGGATTCTT+TGG - chr4.2:6781110-6781129 MS.gene72170:intron 45.0%
GCAGATCACAATTGGAAGGT+GGG - chr4.2:6782715-6782734 MS.gene72170:CDS 45.0%
GCTGATTGTAGGACATCTAG+TGG - chr4.2:6782168-6782187 MS.gene72170:CDS 45.0%
GTGCTTCAAACAGGTTGTTG+CGG - chr4.2:6785000-6785019 MS.gene72170:intron 45.0%
GTGTCATCAGTCAAGAGGTT+TGG - chr4.2:6785124-6785143 MS.gene72170:CDS 45.0%
TAACATTTGCAGAGAGGAGG+AGG - chr4.2:6781821-6781840 MS.gene72170:CDS 45.0%
TAAGGATCAAAGCAGTGCCA+AGG - chr4.2:6783010-6783029 MS.gene72170:CDS 45.0%
TCCAGCTCTTGTGTTTGCAT+TGG + chr4.2:6782142-6782161 None:intergenic 45.0%
TCTGCTCTAACATTGCATCG+AGG + chr4.2:6782869-6782888 None:intergenic 45.0%
TTTCCATCTCACTCTCACTC+AGG - chr4.2:6780928-6780947 MS.gene72170:CDS 45.0%
! GTCCTCCAGTTCCTCAATTT+TGG + chr4.2:6784632-6784651 None:intergenic 45.0%
! TTTTCGCAAACGAAGGGATG+AGG - chr4.2:6782680-6782699 MS.gene72170:CDS 45.0%
!! CTGGATTGAGTGCTGATTGT+AGG - chr4.2:6782157-6782176 MS.gene72170:CDS 45.0%
!! GAAGGAGCACCATTTGTTGT+AGG + chr4.2:6782279-6782298 None:intergenic 45.0%
!! TCAGAGCATTGCTTTGCCAA+AGG - chr4.2:6784669-6784688 MS.gene72170:intron 45.0%
!! TTGTGGTGTCATCAGTCAAG+AGG - chr4.2:6785119-6785138 MS.gene72170:CDS 45.0%
!!! ACGCCCTTTTTTCTTCCCTA+TGG - chr4.2:6785167-6785186 MS.gene72170:CDS 45.0%
!!! TCCTTTTGGTTTGAGCGGAT+AGG - chr4.2:6784362-6784381 MS.gene72170:intron 45.0%
ACAGGTGGATGTGTCAGACA+TGG - chr4.2:6782533-6782552 MS.gene72170:CDS 50.0%
AGCCCTTCCTAGCATTCTTG+AGG + chr4.2:6785516-6785535 None:intergenic 50.0%
AGGTTTCACTCATTGGGCCA+AGG - chr4.2:6781945-6781964 MS.gene72170:intron 50.0%
ATGCAAATGAGACGGCTACC+AGG - chr4.2:6783561-6783580 MS.gene72170:CDS 50.0%
ATGGGAACTTTCCCGAGGAA+GGG + chr4.2:6782457-6782476 None:intergenic 50.0%
CAAAGCTTCCTCAGCTCGAA+TGG + chr4.2:6783453-6783472 None:intergenic 50.0%
CCAGTTCCTCCTCTAACTTG+CGG + chr4.2:6783358-6783377 None:intergenic 50.0%
CTTGATACTCCCCGAGAACT+TGG - chr4.2:6782231-6782250 MS.gene72170:CDS 50.0%
GAACCAGATCCGCAAGTTAG+AGG - chr4.2:6783346-6783365 MS.gene72170:CDS 50.0%
GAACTGGAGAAACAAGCCCA+AGG - chr4.2:6783371-6783390 MS.gene72170:CDS 50.0%
GCAAATGTGCATGACTGCCA+TGG + chr4.2:6785288-6785307 None:intergenic 50.0%
GCCAATGCAAACACAAGAGC+TGG - chr4.2:6782138-6782157 MS.gene72170:CDS 50.0%
GTACCTGAGTGAGAGTGAGA+TGG + chr4.2:6780934-6780953 None:intergenic 50.0%
TCGTGTGCAGAAGAGACTAC+TGG - chr4.2:6783610-6783629 MS.gene72170:CDS 50.0%
TGAGGAACTGGAGGACAAAG+TGG - chr4.2:6784636-6784655 MS.gene72170:intron 50.0%
TGTGCAGAAGAGACTACTGG+AGG - chr4.2:6783613-6783632 MS.gene72170:CDS 50.0%
! CAAGGCTGAAGTTGCTGCTT+TGG - chr4.2:6782506-6782525 MS.gene72170:CDS 50.0%
! CTGGTTCTCAAGAGACTCGA+TGG + chr4.2:6783333-6783352 None:intergenic 50.0%
! TGCTCAGCTGGTTCAGAACT+TGG - chr4.2:6782393-6782412 MS.gene72170:CDS 50.0%
!! GAGCACCATTTGTTGTAGGG+TGG + chr4.2:6782275-6782294 None:intergenic 50.0%
!! GGAGACTGCTTTGGAAGCAT+CGG - chr4.2:6784570-6784589 MS.gene72170:intron 50.0%
!! TTGAAGCTCTGAAGAGTGGC+TGG + chr4.2:6782307-6782326 None:intergenic 50.0%
AAGAGGGCAGGAGCTCACAA+AGG - chr4.2:6782596-6782615 MS.gene72170:CDS 55.0%
AGTTGGCAGGGATTTCTCCG+AGG - chr4.2:6783808-6783827 MS.gene72170:CDS 55.0%
CCAGATCCGCAAGTTAGAGG+AGG - chr4.2:6783349-6783368 MS.gene72170:CDS 55.0%
CCGCAAGTTAGAGGAGGAAC+TGG - chr4.2:6783355-6783374 MS.gene72170:CDS 55.0%
CTCTACATCCGCTGCCTGAT+GGG + chr4.2:6782475-6782494 None:intergenic 55.0%
CTCTCAAGATGCCCTTCCTC+GGG - chr4.2:6782443-6782462 MS.gene72170:CDS 55.0%
GAAGAGTGGCTGGTGACTGA+AGG + chr4.2:6782297-6782316 None:intergenic 55.0%
GAATGCTCTTCTCCTCCTCC+TGG - chr4.2:6783224-6783243 MS.gene72170:CDS 55.0%
GATGGGAACTTTCCCGAGGA+AGG + chr4.2:6782458-6782477 None:intergenic 55.0%
GCAAAGAGCCATTCGAGCTG+AGG - chr4.2:6783442-6783461 MS.gene72170:CDS 55.0%
GCTCTCAAGATGCCCTTCCT+CGG - chr4.2:6782442-6782461 MS.gene72170:CDS 55.0%
GGAAAGTTCCCATCAGGCAG+CGG - chr4.2:6782464-6782483 MS.gene72170:CDS 55.0%
GGAACTGGAGGACAAAGTGG+AGG - chr4.2:6784639-6784658 MS.gene72170:intron 55.0%
GTCTGACACATCCACCTGTC+TGG + chr4.2:6782532-6782551 None:intergenic 55.0%
TACTTCAGTCAGCGCTCTCC+TGG + chr4.2:6783582-6783601 None:intergenic 55.0%
TCCTCGGGAAAGTTCCCATC+AGG - chr4.2:6782458-6782477 MS.gene72170:CDS 55.0%
TCTCTACATCCGCTGCCTGA+TGG + chr4.2:6782476-6782495 None:intergenic 55.0%
! AGCACGAGGAACAAGTTGGC+AGG - chr4.2:6783795-6783814 MS.gene72170:CDS 55.0%
! CCTCCTCTAACTTGCGGATC+TGG + chr4.2:6783352-6783371 None:intergenic 55.0%
! GCACGAGGAACAAGTTGGCA+GGG - chr4.2:6783796-6783815 MS.gene72170:CDS 55.0%
! TCAGGTGCTGCAATCTGGTG+TGG - chr4.2:6781101-6781120 MS.gene72170:intron 55.0%
!! AGTTGCTGCTTTGGCCAGAC+AGG - chr4.2:6782515-6782534 MS.gene72170:CDS 55.0%
CATTTCCGGGACTGCTCAGC+TGG - chr4.2:6782381-6782400 MS.gene72170:CDS 60.0%
CTGAACCAGCTGAGCAGTCC+CGG + chr4.2:6782389-6782408 None:intergenic 60.0%
GCAGATGGAGCAGCTTGCAC+TGG - chr4.2:6783115-6783134 MS.gene72170:CDS 60.0%
GCCTGATGGGAACTTTCCCG+AGG + chr4.2:6782462-6782481 None:intergenic 60.0%
!! TGCTGCTTTGGCCAGACAGG+TGG - chr4.2:6782518-6782537 MS.gene72170:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 6780875 6785537 6780875 ID=MS.gene72170
chr4.2 mRNA 6780875 6785537 6780875 ID=MS.gene72170.t1;Parent=MS.gene72170
chr4.2 exon 6785463 6785537 6785463 ID=MS.gene72170.t1.exon1;Parent=MS.gene72170.t1
chr4.2 CDS 6785463 6785537 6785463 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6785107 6785307 6785107 ID=MS.gene72170.t1.exon2;Parent=MS.gene72170.t1
chr4.2 CDS 6785107 6785307 6785107 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6784885 6785007 6784885 ID=MS.gene72170.t1.exon3;Parent=MS.gene72170.t1
chr4.2 CDS 6784885 6785007 6784885 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6784696 6784733 6784696 ID=MS.gene72170.t1.exon4;Parent=MS.gene72170.t1
chr4.2 CDS 6784696 6784733 6784696 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6784471 6784579 6784471 ID=MS.gene72170.t1.exon5;Parent=MS.gene72170.t1
chr4.2 CDS 6784471 6784579 6784471 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6782064 6784292 6782064 ID=MS.gene72170.t1.exon6;Parent=MS.gene72170.t1
chr4.2 CDS 6782064 6784292 6782064 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6781722 6781859 6781722 ID=MS.gene72170.t1.exon7;Parent=MS.gene72170.t1
chr4.2 CDS 6781722 6781859 6781722 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6781272 6781399 6781272 ID=MS.gene72170.t1.exon8;Parent=MS.gene72170.t1
chr4.2 CDS 6781272 6781399 6781272 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
chr4.2 exon 6780875 6781118 6780875 ID=MS.gene72170.t1.exon9;Parent=MS.gene72170.t1
chr4.2 CDS 6780875 6781118 6780875 ID=cds.MS.gene72170.t1;Parent=MS.gene72170.t1
Gene Sequence

>MS.gene72170

ATGTTCAGATGGAGGAGTGATAAAAACAAAGTCAAAGCTGTTTTCAAACTACATTTCCATCTCACTCTCACTCAGGTACGGTACTACCTTCACATTTCTTCATCATTCTTTTTTTTTTTTAACGACTCAAGAACCAACTTATCTCGAGACCAATTCAAAATTGTTCATCATTCTTTAAATCAATTTCAAAATTCTTATTTAATTTTGTACTAATGTTTGTATAATTTCAGGTGCTGCAATCTGGTGTGGATTCTTTGGTACTCTCTATAGTTCCTGGAGATAATGGAAAACCAACTACAAGATTAGAGAAAGCTATAGTTCATGATGGAAATTGTAAATGGGAGAATCCTGTTTATGAAGCTGTTAAGTTTAATCAGGATCCTAAGAATGGGAAATTTAGTGAAAAACTTTATTATTTTGTGATTTCAACGGTATGATTTCTTTTTGTTGTTGACTTTTTGGTTGTGTCATGTGAATGTGATGTTTGATTGTGAATTTGTGATATGGTTTATTTGTTCTATTTTGCCTAGGGATTATCAAAAGCTAGTATCTTTGGAGAAGTTTCTATAGATTTTGCTGATTATGCAGAAGCTACAAAGATTTCTTCTGTTTCTCTTCCCATCAAGAATTCTCATTCGGATGCCGTCTTGCATGTTAGTGTTTGATCTCTTCAATTTTCTGTTTTTTTTTCCCTTCAAATTGTTGAAATTTTGGAGAAAACTAATCAAGAAATTGAGTAGAAATTAGAAAACAATTTTGTGCAACATTGATTTCAGTAGTTCTGATTTTTTGCTAAATGGACAGGTATCTATTCAGAGACTACAAGAAAATAGTGATAAAAGGTATGTGGGGATGATTATCTTGATTATTTGACCCTTTTCTGGATATAGATTTTGATTTTGCCTCATACTCAACTGTTTTTATGACAGATTTTGTTCTTGTTAATTAACATTTGCAGAGAGGAGGAGGAATGTGAAGATGCCAAACAAAAACTCAATGATAGGAGCTTAAGGACCTATTTAAGCACTGGAGATATAGATGGATGCACTAAAAGTGATTCTTCTGAAGTAAGGTTTCACTCATTGGGCCAAGGAATTATTCATTATTGTAAATTTATCTTTACTCAACACATATATTGAACAGTCATGTCCTTTCTTAGAGCAAAAGTTGTCTATTTTCTATCCTTCTTCTATTCCCATTGTTAAAATTATGTTTGAAATTACTAAATTTCGTTTTTCTTTCTAGATTTCACAGGATGTGTCTGCCAATGCAAACACAAGAGCTGGATTGAGTGCTGATTGTAGGACATCTAGTGGATCTGACATTACAATGTCAAGTTCCGATGGAAGCTCTGCACTTGATACTCCCCGAGAACTTGGACTAAGAAATACTAGCATCCACCCTACAACAAATGGTGCTCCTTCAGTCACCAGCCACTCTTCAGAGCTTCAAAATCTTGCTGTGGATGGCTTAGCGTCAATGTTTGATGTACATCAGAGATCATCACATTTCCGGGACTGCTCAGCTGGTTCAGAACTTGGTCTGAGTATGGACGGTTCAATACATGGCTCTCAAGATGCCCTTCCTCGGGAAAGTTCCCATCAGGCAGCGGATGTAGAGAATGAAAAACTCAAGGCTGAAGTTGCTGCTTTGGCCAGACAGGTGGATGTGTCAGACATGGAACTTCAAACTCTTCGGAAACAAATCGTAAAGGAAAGCAAAAGAGGGCAGGAGCTCACAAAGGAAGTTATCAGCTTGAAAGAGGAAAGAGATACACTCAAGATAGAGTGCGAAAACCTCAAATCTTTTCGCAAACGAAGGGATGAGGCTAAAGTGAGTAGCAGATCACAATTGGAAGGTGGGGATCTTCATACTCTTATTGAAGAAATCAGACAAGAATTGAATCACGAGAAGGACATGAATGCAAATCTCAGATTACAGTTAAATAAGACACAGGAATCAAATGCTGAACTAGTTCTTGCTGTTCAGGACCTCGATGCAATGTTAGAGCAGAAAAATAAGGAAATACACAGTCTTTCCAATAATTACAAACAGACTAAAAACTCCCATGATTTAGGGAGAAATGTCTCTAATTGCGAAACAGACGATGAACAGAAAGAATTGGATGAGCTTGTTAAGGATCAAAGCAGTGCCAAGGAGACACACTTACTTGAGCAAAAAATCACGGATCTCTATGGTGAGATAGAGATGTATAGGAGAGACAAAGATGAGTTAGAGATGCAGATGGAGCAGCTTGCACTGGACTATGAAATTTTGAAACAGGAAAACCATGAATTTGCATATAAGATGGAACAGAGCGAACTGCAAGAACAGCTAAAATTTCAATATGAATGCTCTTCTCCTCCTCCTGGTATAAATGACTTTGAAACACATATCCAGAATCTGGAAAATCAACTCAAGAAACAATCGGATGAATTCTCAAATTCTCTGGCTACCATCGAGTCTCTTGAGAACCAGATCCGCAAGTTAGAGGAGGAACTGGAGAAACAAGCCCAAGGATTTGAAGCTGACTTAGATGCAGTGACACATGACAAAGTTAAGCAGGAGCAAAGAGCCATTCGAGCTGAGGAAGCTTTGCGAAACACCAGACTTAAAAATGCTAATACTGCAGAGAGGCTTCAAGAAGAATTCAAAAGGCTATCAATGCAGATGGCCACTACATTTGATGCAAATGAGACGGCTACCAGGAGAGCGCTGACTGAAGTAAGTGAACTTCGTGTGCAGAAGAGACTACTGGAGGAAATGCTGCGTAAAGTCAAAGAAGAGCTTGAATCAGTCAAAGCCGATTATGAGGTAAAACTGAATGAAATTTCCAACAAAAAAGATGCCATGACAGTTCAGATGCAACAGATGTTGTTGGAAATTGACGACAAGTCCATGCAACTTGAAAATAAGAAAAAGCACGAGGAACAAGTTGGCAGGGATTTCTCCGAGGAGATTCAGTTGCTAAAAGCTGAGAATGAAAAGCTTACAGTGGAGATCTCGTGCTTATCTGAGCAAGCAAAACAAAAAGAAATCTTAAGTTCTGACTTGGAACTTATGAAGAAATCACTTGAGGAATATGAGATTCTTTTAAATACTCGAAAGGAAGAAAGAAATGAGCTTGTGAGTACAATTGCTTTGTTGAAGAAGGAAGCAGAACGGTCACTTGATGAGCTAAATAGGATGATGCATCTCAAGGATGAAGAGGAGAAAGTGGGTAAACTCTTGCGTTCAGAGTTAGAAGCACTTAAAGCTCAATATAACAACCTGAAACATTCTCTTATTGATGATGAGACTGAGAAAGAAAAACTAAGACAACAAATTTTCCATCTTAACGATGAACTGAAGAAGAAGGACGATGCATTAACCTACATTGAGACTAAAACCATTCCAACTAACCAAAAAAGTGCTTCAATTCTTCATGACACCAAAGAAATGACAGATCTGAGAGAGAAAATAAAAATGCTTGAGGTAAATTTTCAAATCCTTTTGGTTTGAGCGGATAGGTCCTTTGAGAAATATGCTTGATAATCAAATGTTAATTCCTCTATAGATATTTTCATCTAGTAATTATCATTTTCACTCGACTGTATTTTCCCTTTGATAGAACTAACTTAAGTTTGAGATCTGACAGTTGAGTGATGGCATATAAACAAAATGATTTGCTTATGACAGGACCTGATAAAATCAAAGGAGACTGCTTTGGAAGCATCGGCTTCTTCATATTTGGAGAAGGAAAGAGAACTTCAATCCAAAATTGAGGAACTGGAGGACAAAGTGGAGGAACTCAATCAGAGCATTGCTTTGCCAAAGGTATACCAATTTGTACATCGCAACACTTAAATTTATAAGTAAAATGAAAACATGATGAATTTGTTTAGCTTACATATCCACCAAAGTGCATTGATGACTGATAGAAATAAGAGAATGTCAACTATTTTTTCCTGTCATTTATAATTTGTCTTAGGCAACGATTGATAATATTTTTGGTTACATGAAGTTTAAATTATAATATATATATATGTCTTGCTTGGTATCTTGATTAAGGTTTTATCATGAATTGTTGGTTTATGAATTATGACATAATTGAACCATATATCTGCAATAAATATGCATTGTTATGTGCTTCAAACAGGTTGTTGCGGATAAGAGTTTTACTACTACAAGTGACGGATCTGAAGAAGTGCGATGTACAATTGAGCATCTCAATGATACTTCATGTATATTGGAAGAAAATGGGGTTGTGGTGTCATCAGTCAAGAGGTTTGGTTGCTTTCTACTTTTATTGCACGCCCTTTTTTCTTCCCTATGGCATTAAGAACACATTTTACTTTTTACACCAATTGTGACACTGATAAATTTGTGAACTGAAGTTATTGAATGGTTTATTTATGGATCATTTTCTGTCCATGGCAGTCATGCACATTTGCCAGAGAAAGAAGCAGAAATACCAGTAATGGATAGTAATGGCAATGGCAGCCTCAGCAACGTTTTAACCGAATTATCATCATTGAAAGAAAGAGACAAATCAATGGAAACTGAACTGAAAGAGTTGCAAGAAAGATACTCAGAAATGAGTCTCAAATTTGCAGAGGTAGAAGGTGAAAGACAAAAGCTTGTTATGACTGTAAGAAGCCTCAAGAATGCTAGGAAGGGCTAA

Protein sequence

>MS.gene72170.t1

MFRWRSDKNKVKAVFKLHFHLTLTQVLQSGVDSLVLSIVPGDNGKPTTRLEKAIVHDGNCKWENPVYEAVKFNQDPKNGKFSEKLYYFVISTGLSKASIFGEVSIDFADYAEATKISSVSLPIKNSHSDAVLHVSIQRLQENSDKREEEECEDAKQKLNDRSLRTYLSTGDIDGCTKSDSSEISQDVSANANTRAGLSADCRTSSGSDITMSSSDGSSALDTPRELGLRNTSIHPTTNGAPSVTSHSSELQNLAVDGLASMFDVHQRSSHFRDCSAGSELGLSMDGSIHGSQDALPRESSHQAADVENEKLKAEVAALARQVDVSDMELQTLRKQIVKESKRGQELTKEVISLKEERDTLKIECENLKSFRKRRDEAKVSSRSQLEGGDLHTLIEEIRQELNHEKDMNANLRLQLNKTQESNAELVLAVQDLDAMLEQKNKEIHSLSNNYKQTKNSHDLGRNVSNCETDDEQKELDELVKDQSSAKETHLLEQKITDLYGEIEMYRRDKDELEMQMEQLALDYEILKQENHEFAYKMEQSELQEQLKFQYECSSPPPGINDFETHIQNLENQLKKQSDEFSNSLATIESLENQIRKLEEELEKQAQGFEADLDAVTHDKVKQEQRAIRAEEALRNTRLKNANTAERLQEEFKRLSMQMATTFDANETATRRALTEVSELRVQKRLLEEMLRKVKEELESVKADYEVKLNEISNKKDAMTVQMQQMLLEIDDKSMQLENKKKHEEQVGRDFSEEIQLLKAENEKLTVEISCLSEQAKQKEILSSDLELMKKSLEEYEILLNTRKEERNELVSTIALLKKEAERSLDELNRMMHLKDEEEKVGKLLRSELEALKAQYNNLKHSLIDDETEKEKLRQQIFHLNDELKKKDDALTYIETKTIPTNQKSASILHDTKEMTDLREKIKMLEDLIKSKETALEASASSYLEKERELQSKIEELEDKVEELNQSIALPKVVADKSFTTTSDGSEEVRCTIEHLNDTSCILEENGVVVSSVKSHAHLPEKEAEIPVMDSNGNGSLSNVLTELSSLKERDKSMETELKELQERYSEMSLKFAEVEGERQKLVMTVRSLKNARKG