AlfalfaGEDB | MS.gene66403

M. sativa cultivar XinJiangDaYe / MS.gene66403

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: PF00332.21 PF07983.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66403.t1	ABD91576.1	99.6	464	2	0	1	464	1	464	1.40E-267	931.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66403.t1	Q9FJU9	70.4	466	133	5	1	464	1	463	3.0e-191	669.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66403.t1	Q1WAK1	99.6	464	2	0	1	464	1	464	9.8e-268	931.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050476	MS.gene66403	0.800776	1.23E-48	-1.69E-46
MS.gene052308	MS.gene66403	0.820283	7.45E-53	-1.69E-46
MS.gene053348	MS.gene66403	0.818702	1.71E-52	-1.69E-46
MS.gene054551	MS.gene66403	0.802878	4.55E-49	-1.69E-46
MS.gene054885	MS.gene66403	0.818268	2.14E-52	-1.69E-46
MS.gene055308	MS.gene66403	0.845506	3.89E-59	-1.69E-46
MS.gene055578	MS.gene66403	0.825521	4.48E-54	-1.69E-46
MS.gene055579	MS.gene66403	0.803623	3.19E-49	-1.69E-46
MS.gene055957	MS.gene66403	0.837635	4.63E-57	-1.69E-46
MS.gene056041	MS.gene66403	0.859534	3.87E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66403.t1	MTR_6g088885	98.817	507	6	0	1	507	1	507	0.0	1037
MS.gene66403.t1	MTR_8g102340	73.054	501	93	6	1	500	1	460	0.0	725
MS.gene66403.t1	MTR_5g085580	40.858	443	246	3	27	454	25	466	1.32e-119	360
MS.gene66403.t1	MTR_3g065460	40.509	432	245	3	26	454	23	445	1.65e-119	360
MS.gene66403.t1	MTR_4g069940	39.294	453	268	4	7	454	9	459	3.71e-119	358
MS.gene66403.t1	MTR_8g085720	37.600	500	296	5	11	502	7	498	1.18e-118	358
MS.gene66403.t1	MTR_1g031900	39.337	483	280	4	8	486	5	478	1.29e-117	355
MS.gene66403.t1	MTR_4g132280	39.545	483	273	6	24	501	42	510	2.23e-117	355
MS.gene66403.t1	MTR_1g056640	39.514	453	245	4	27	452	38	488	4.91e-117	354
MS.gene66403.t1	MTR_3g116510	40.138	436	258	2	25	459	26	459	1.68e-116	351

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66403.t1	AT5G56590	70.870	460	130	4	20	477	19	476	0.0	685
MS.gene66403.t1	AT4G29360	63.780	508	153	7	18	495	28	534	0.0	643
MS.gene66403.t1	AT4G29360	61.509	530	172	8	1	499	1	529	0.0	642
MS.gene66403.t1	AT2G01630	42.609	460	250	5	25	480	21	470	7.93e-128	382
MS.gene66403.t1	AT4G26830	41.943	453	258	5	1	452	1	449	2.20e-126	376
MS.gene66403.t1	AT4G26830	42.558	430	244	3	26	454	28	455	4.12e-126	376
MS.gene66403.t1	AT2G01630	43.560	427	229	4	25	448	21	438	6.22e-125	372
MS.gene66403.t1	AT5G55180	41.898	432	247	4	26	454	26	456	1.61e-123	369
MS.gene66403.t1	AT1G66250	40.947	486	272	7	24	504	29	504	4.02e-122	367
MS.gene66403.t1	AT5G55180	42.019	426	243	4	26	448	26	450	2.25e-121	364

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Find 109 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCATGGTAACCGAGAC+AGG	0.476137	6.3:+82789376	MS.gene66403:CDS
AACCGGTACACCTGCAAAGC+CGG	0.434168	6.3:+82789492	MS.gene66403:CDS
AACGGAAGCAAATCTAGATT+TGG	0.372532	6.3:-82788842	None:intergenic
AACTCCAAGGGAATGAGTAC+TGG	0.477506	6.3:-82789065	None:intergenic
AACTGCATCTACATGAAAAC+TGG	0.275506	6.3:+82790234	MS.gene66403:CDS
AACTGTGACACCTTATCAGG+TGG	0.598360	6.3:-82788719	None:intergenic
AAGATCACATACATAACTGT+CGG	0.658420	6.3:+82788932	MS.gene66403:CDS
AAGTTATCCGGCTCAAAACA+AGG	0.571467	6.3:-82789814	None:intergenic
AATAGCTATTACCAGCAAAA+TGG	0.320368	6.3:+82789862	MS.gene66403:CDS
AATGCGATAAATTGGGCTTG+TGG	0.631670	6.3:+82789748	MS.gene66403:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAAGACTTCTAAGTT+TGG	+	chr6.3:82787583-82787602	MS.gene66403:intron	30.0%
AAGATCACATACATAACTGT+CGG	+	chr6.3:82788932-82788951	MS.gene66403:CDS	30.0%
AATAGCTATTACCAGCAAAA+TGG	+	chr6.3:82789862-82789881	MS.gene66403:CDS	30.0%
AGACATGTTATCAATGAAAC+CGG	+	chr6.3:82789475-82789494	MS.gene66403:CDS	30.0%
AGGCGTAATACAACAATTTA+CGG	-	chr6.3:82790300-82790319	None:intergenic	30.0%
AGTGTTAGGATCAATAACTT+CGG	-	chr6.3:82789275-82789294	None:intergenic	30.0%
CAACTTCAAATGGAACAAAA+TGG	+	chr6.3:82789686-82789705	MS.gene66403:CDS	30.0%
GATAACATGTCTTATCAGAT+TGG	-	chr6.3:82789467-82789486	None:intergenic	30.0%
GTCCTTGAAAATTTCTTTGT+TGG	+	chr6.3:82790266-82790285	MS.gene66403:intron	30.0%
TAACTCACATTTGAGAGATT+TGG	+	chr6.3:82788170-82788189	MS.gene66403:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	82787277	82790529	82787277	ID=MS.gene66403
chr6.3	mRNA	82787277	82790529	82787277	ID=MS.gene66403.t1;Parent=MS.gene66403
chr6.3	exon	82787277	82787334	82787277	ID=MS.gene66403.t1.exon1;Parent=MS.gene66403.t1
chr6.3	CDS	82787277	82787334	82787277	ID=cds.MS.gene66403.t1;Parent=MS.gene66403.t1
chr6.3	exon	82788660	82789943	82788660	ID=MS.gene66403.t1.exon2;Parent=MS.gene66403.t1
chr6.3	CDS	82788660	82789943	82788660	ID=cds.MS.gene66403.t1;Parent=MS.gene66403.t1
chr6.3	exon	82790226	82790256	82790226	ID=MS.gene66403.t1.exon3;Parent=MS.gene66403.t1
chr6.3	CDS	82790226	82790256	82790226	ID=cds.MS.gene66403.t1;Parent=MS.gene66403.t1
chr6.3	exon	82790379	82790529	82790379	ID=MS.gene66403.t1.exon4;Parent=MS.gene66403.t1
chr6.3	CDS	82790379	82790529	82790379	ID=cds.MS.gene66403.t1;Parent=MS.gene66403.t1

Gene Sequence

>MS.gene66403

ATGGCAAGAGGGTTTTGCTTCATCTTGGTTGTTGCTTCAGTTTTGCTTATGCTTCTTGGTTTGTACTTCTTTCTCTTTCTATGAACACTTTGCATTATGTTTATGATCTAAGTACTTTTGTTGCATGTTTCTTGGTTCATCATGTTTTTATGTTGTGTTTTTTGTAATGTACTTGTTTCTAAGTACTTTTTGTTGCATGTTTCTTGGTTCATGATGTCACTATTTTCTCATAGCTATATTTTCTCTCAATTTTTTTTAAAAGTTGTTTGTGATGTTAAGCTTGTTACCCTTTATGGAAAACATGAGAAATGGAAGACTTCTAAGTTTGGAACTAGATAGAAGATAGGTCAAAAGCAGTTTCTAATGTTATTGTTCATAGACATTAATCTCATTAAGTGGCTTGCATAATCAGTTTCATTTCATGTGGATCTAACTTTTCTAACCATCATTAACCAACCATGTAGTGTGTGTTCGGTTATGCGGTGACAAAACTTGATTTTGAACTGAAGCACGGACACTCCTCGAATTACAGGTGTCCCGTTGTCGGACACATGTCGTGTCTGACACCGACACCGACCCATATAATTACATTGAATTATGAGATTTTCTCAAATTATTAGCGGTGTTGGCATGTCAGTGTCCAGTGTCCGTGCTTCATAGATTTTGAATAATTAATTATGTAAAATTGATTCTGCTTAAAAATGAGTTGAATATAAAGTTATTTATGTTTGGATACACTCGTGGACACTTAAGTTTGAAGGCGCGTCTGCGTGTGTCCAACATTCATACGATAGTGACACATAATCACTTTCATTTTCTTAAATTTCTATTTACTACTATGTCTACATATCAGTGTTTGTGTGTGTCCGAGTCCGACGGTGTCTCATAGGGTTTAACTCACATTTGAGAGATTTGGTTTTGATTTTGTAAAAAAAACTATATTTTTGGATATATCAAGCCTAAACTACTTTTGTTCCATTTAGCATGATTAACTAAAACAAAGCTTTGTAACATCGGTTAAGAATTTGTTGGCTAACCATGTCAATGTCATTAGTCAAAGTATCCACTGACTTAGTCGTTGACTGACATTCGTTGGGGAACCTGGTTGACCACCTTTTGTAGAGTCTCCCCTACAACCACATTTGTTCCATCGACAAGGCTCGCACATGAAATATTACTTAAGAGATCCGAGTCCAGTTTCACTCGAATGAATGTAATGTTGGTTGGTTAAGAATTTGATACTGAAATAATTGCAAATTAATAAATTGTTGTTTTGACTTGCAGATACTATTCTCAATTGTAATTCTTATTTCTTCTATTTGATATTTATGGAATTTTGTAATTCTTATTTATTTTATTTGATTTTTATGAATTTATTTCCAGATTGTTGCTACGGGAGTTTTGTTGGAATTTGCTATGGAAGAAATGCTGATGACCTGCCTCCACCTGATAAGGTGTCACAGTTGGTTCAAGATCACAAAATCAAATATGTCAGAATTTACGATTCTAACATACAAGTTCTAAAATCTTTTGCAAACACCGGCGTCGAACTTATGATTGGAATTCCAAATCTAGATTTGCTTCCGTTCTCTCAGTTCCAAACTAATGCAGACACTTGGCTGAGAAATAGCATCCTTCCTTACTATCCAGCCACCAAGATCACATACATAACTGTCGGTGCCGAAGTTACAGAAAGTCCCGAAAACATTTCCGCATTAGTTGTGCCAGCCATGACTAATGTCCTTGCAGCACTCAAGAAAGCTGGACTTCATAAGAAGATAAAAGTTTCCAGTACTCATTCCCTTGGAGTTTTGTCTCGATCGTTCCCTCCTTCGGCTGGTGCTTTTAATAGCAAACATGCTCATTTCCTTAAGCCACTGCTGGAATTTCTTGCGGAAAATCAGTCGCCTTTTATGATCGATCTGTATCCTTATTACGCATATCGTGACTCTCCAACCAAAGTGTCCTTGGACTATGCATTGTTTGAGTCCTCCTCCGAAGTTATTGATCCTAACACTGGTTTGCTTTATACAAACATGTTTGATGCTCAGATTGATGCAATTTATTTTGCGTTAACGGCGTTGAATTTCAGAACGATTAAAGTCATGGTAACCGAGACAGGTTGGCCTTCGAAAGGTTCACCTAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATATAATACCAATCTGATAAGACATGTTATCAATGAAACCGGTACACCTGCAAAGCCGGGGGAAGAGCTAGACGTCTACATATTTTCATTGTTCAATGAAAATAGGAAGCCAGGTTTGGAATCTGAAAGGAACTGGGGAATAGTTTATCCGGACCTAACAAACGTGTACAGCCTAGATTTTACTGGACGAGGTCCTGTTGACATGACCGCAGATGCAAATGCTACTAGTTCAACTTCAAATGGAACAAAATGGTGCATTGCTTCGAGTAACGCAACTCAACTTGACTTACAAAATGCGATAAATTGGGCTTGTGGTACTTCTGGAAATGTGGACTGTACTGCTATTCAGCCTAGCCAGCCTTGTTTTGAGCCGGATAACTTAGTCTCGCATGCTTCATATGCTTTTAATAGCTATTACCAGCAAAATGGTGCTTCTGATGTTGCCTGTAGTTTTGGAGGGACTGGTGTACTTGTTGATAAGGATCCAAGTATGTTCATATCCCATCACTTAATTAATTTGCCTTTCCATTTTTCAGTTTTTTTCGTATACTTATCTTTTCGGCAGCTATTGCATGCTTTTTTTAGGTTTAAATATGTTATGGTCCCTGTAAATATGCAATATTTTCCATTTGTCCTTGCTATTTTTTTGGTCCTGATAAATTTGTTCATCTTTGAATGATCCTGTAATATGTGTAGATGATTTATTGTTGCTAAAGCATTTCTGTAGACCGTTTTTCTTACTGAACAAACTATTTTTTTCGATTTTGCAGCCTATGACAACTGCATCTACATGAAAACTGGGTATGTTCAGTCCTTGAAAATTTCTTTGTTGGTTTTATATCCGTAAATTGTTGTATTACGCCTTATCATTATTAAGACTGAAGCATGACATTTGAGTCTTTTTCTCTCCTGTTTTTGTGCAGAACTAACCAAACTTTGGCAAGTAATAATACAACGGCGACATCAATATCTTCACCTCCATCCTCCTCAAGCAAAGAAGTCTACTCATCAATCTCGACTAGTGCTCTTCTTTTGATCTTTCTCCTTTTTCTTTTGGATATCGGACAAGCCTAA

Protein sequence

>MS.gene66403.t1

MARGFCFILVVASVLLMLLDCCYGSFVGICYGRNADDLPPPDKVSQLVQDHKIKYVRIYDSNIQVLKSFANTGVELMIGIPNLDLLPFSQFQTNADTWLRNSILPYYPATKITYITVGAEVTESPENISALVVPAMTNVLAALKKAGLHKKIKVSSTHSLGVLSRSFPPSAGAFNSKHAHFLKPLLEFLAENQSPFMIDLYPYYAYRDSPTKVSLDYALFESSSEVIDPNTGLLYTNMFDAQIDAIYFALTALNFRTIKVMVTETGWPSKGSPKETAATPDNAQTYNTNLIRHVINETGTPAKPGEELDVYIFSLFNENRKPGLESERNWGIVYPDLTNVYSLDFTGRGPVDMTADANATSSTSNGTKWCIASSNATQLDLQNAINWACGTSGNVDCTAIQPSQPCFEPDNLVSHASYAFNSYYQQNGASDVACSFGGTGVLVDKDPTYDNCIYMKTGTNQTLASNNTTATSISSPPSSSSKEVYSSISTSALLLIFLLFLLDIGQA