Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050527.t1 | AHK12705.1 | 100 | 376 | 0 | 0 | 1 | 376 | 1 | 376 | 7.60E-223 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050527.t1 | A2Z7B3 | 90.7 | 378 | 33 | 1 | 1 | 376 | 1 | 378 | 1.1e-206 | 720.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050527.t1 | W8G2X4 | 100.0 | 376 | 0 | 0 | 1 | 376 | 1 | 376 | 5.4e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050462 | MS.gene050527 | 0.939118 | 2.17E-99 | -1.69E-46 |
| MS.gene050527 | MS.gene050762 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene050527 | MS.gene050763 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene050527 | MS.gene060869 | 0.821111 | 4.80E-53 | -1.69E-46 |
| MS.gene050527 | MS.gene072564 | 0.81138 | 7.21E-51 | -1.69E-46 |
| MS.gene050527 | MS.gene072565 | 0.809823 | 1.56E-50 | -1.69E-46 |
| MS.gene050527 | MS.gene37653 | 0.815884 | 7.36E-52 | -1.69E-46 |
| MS.gene050527 | MS.gene39313 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene050527 | MS.gene58777 | -0.805899 | 1.07E-49 | -1.69E-46 |
| MS.gene050527 | MS.gene92043 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene050527 | MS.gene93128 | 0.816171 | 6.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050527.t1 | MTR_7g115080 | 99.204 | 377 | 2 | 1 | 1 | 376 | 35 | 411 | 0.0 | 784 |
| MS.gene050527.t1 | MTR_7g115080 | 99.204 | 377 | 2 | 1 | 1 | 376 | 1 | 377 | 0.0 | 783 |
| MS.gene050527.t1 | MTR_7g115080 | 99.204 | 377 | 2 | 1 | 1 | 376 | 14 | 390 | 0.0 | 782 |
| MS.gene050527.t1 | MTR_1g080950 | 91.512 | 377 | 31 | 1 | 1 | 376 | 1 | 377 | 0.0 | 731 |
| MS.gene050527.t1 | MTR_1g080950 | 91.512 | 377 | 31 | 1 | 1 | 376 | 37 | 413 | 0.0 | 728 |
| MS.gene050527.t1 | MTR_4g120030 | 28.254 | 315 | 208 | 8 | 29 | 339 | 112 | 412 | 7.26e-28 | 114 |
| MS.gene050527.t1 | MTR_2g096660 | 28.115 | 313 | 201 | 9 | 28 | 330 | 38 | 336 | 2.20e-27 | 111 |
| MS.gene050527.t1 | MTR_4g063600 | 27.083 | 336 | 210 | 11 | 15 | 330 | 10 | 330 | 5.50e-27 | 110 |
| MS.gene050527.t1 | MTR_1g088480 | 28.614 | 332 | 206 | 11 | 28 | 348 | 118 | 429 | 1.28e-26 | 110 |
| MS.gene050527.t1 | MTR_4g063600 | 27.083 | 336 | 207 | 12 | 15 | 330 | 10 | 327 | 1.37e-25 | 106 |
| MS.gene050527.t1 | MTR_1g067530 | 24.931 | 361 | 216 | 11 | 26 | 345 | 110 | 456 | 4.96e-21 | 94.7 |
| MS.gene050527.t1 | MTR_7g108490 | 25.309 | 324 | 212 | 11 | 29 | 341 | 15 | 319 | 1.38e-19 | 89.0 |
| MS.gene050527.t1 | MTR_7g108490 | 25.309 | 324 | 212 | 11 | 29 | 341 | 16 | 320 | 1.54e-19 | 88.6 |
| MS.gene050527.t1 | MTR_5g011940 | 24.852 | 338 | 212 | 12 | 28 | 334 | 90 | 416 | 2.43e-16 | 80.5 |
| MS.gene050527.t1 | MTR_4g102270 | 24.118 | 340 | 214 | 11 | 30 | 337 | 95 | 422 | 1.64e-15 | 77.8 |
| MS.gene050527.t1 | MTR_4g024600 | 25.000 | 336 | 210 | 13 | 30 | 334 | 103 | 427 | 1.87e-15 | 77.8 |
| MS.gene050527.t1 | MTR_0354s0040 | 24.110 | 365 | 227 | 14 | 6 | 334 | 58 | 408 | 4.36e-14 | 73.6 |
| MS.gene050527.t1 | MTR_3g084090 | 23.757 | 362 | 204 | 14 | 30 | 342 | 101 | 439 | 3.18e-13 | 70.9 |
| MS.gene050527.t1 | MTR_4g129820 | 23.599 | 339 | 215 | 11 | 28 | 334 | 95 | 421 | 4.06e-13 | 70.9 |
| MS.gene050527.t1 | MTR_1g009600 | 26.606 | 327 | 213 | 12 | 26 | 336 | 3 | 318 | 1.12e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050527.t1 | AT5G28840 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| MS.gene050527.t1 | AT5G28840 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| MS.gene050527.t1 | AT3G46440 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 2.90e-29 | 116 |
| MS.gene050527.t1 | AT3G46440 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 2.90e-29 | 116 |
| MS.gene050527.t1 | AT3G53520 | 29.712 | 313 | 195 | 11 | 26 | 328 | 118 | 415 | 5.34e-29 | 117 |
| MS.gene050527.t1 | AT5G59290 | 28.939 | 311 | 197 | 9 | 28 | 328 | 1 | 297 | 2.34e-28 | 113 |
| MS.gene050527.t1 | AT3G62830 | 28.525 | 305 | 205 | 8 | 28 | 328 | 119 | 414 | 2.70e-28 | 115 |
| MS.gene050527.t1 | AT3G62830 | 28.525 | 305 | 205 | 8 | 28 | 328 | 119 | 414 | 2.70e-28 | 115 |
| MS.gene050527.t1 | AT5G59290 | 28.939 | 311 | 197 | 9 | 28 | 328 | 30 | 326 | 3.10e-28 | 113 |
| MS.gene050527.t1 | AT2G47650 | 28.525 | 305 | 205 | 8 | 28 | 328 | 121 | 416 | 3.62e-28 | 115 |
| MS.gene050527.t1 | AT5G59290 | 28.939 | 311 | 197 | 9 | 28 | 328 | 45 | 341 | 4.20e-28 | 113 |
| MS.gene050527.t1 | AT5G59290 | 28.939 | 311 | 197 | 9 | 28 | 328 | 23 | 319 | 6.29e-28 | 112 |
| MS.gene050527.t1 | AT2G28760 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.62e-27 | 111 |
| MS.gene050527.t1 | AT2G28760 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.62e-27 | 111 |
| MS.gene050527.t1 | AT2G28760 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.62e-27 | 111 |
| MS.gene050527.t1 | AT2G28760 | 27.974 | 311 | 200 | 9 | 28 | 328 | 62 | 358 | 5.03e-27 | 110 |
| MS.gene050527.t1 | AT3G53520 | 29.073 | 313 | 195 | 12 | 26 | 328 | 118 | 413 | 4.22e-26 | 108 |
| MS.gene050527.t1 | AT2G47650 | 27.796 | 313 | 207 | 9 | 28 | 330 | 121 | 424 | 4.37e-26 | 108 |
| MS.gene050527.t1 | AT3G53520 | 27.219 | 338 | 194 | 13 | 26 | 328 | 118 | 438 | 4.00e-24 | 103 |
| MS.gene050527.t1 | AT1G73250 | 25.625 | 320 | 202 | 8 | 29 | 334 | 18 | 315 | 1.04e-21 | 95.1 |
| MS.gene050527.t1 | AT1G17890 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.24e-21 | 94.7 |
| MS.gene050527.t1 | AT1G17890 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.24e-21 | 94.7 |
| MS.gene050527.t1 | AT1G17890 | 25.000 | 324 | 217 | 8 | 29 | 343 | 21 | 327 | 1.26e-21 | 94.7 |
| MS.gene050527.t1 | AT2G45310 | 25.676 | 370 | 217 | 16 | 6 | 334 | 71 | 423 | 3.15e-18 | 86.3 |
| MS.gene050527.t1 | AT4G00110 | 25.223 | 337 | 208 | 13 | 30 | 334 | 93 | 417 | 7.90e-16 | 79.0 |
| MS.gene050527.t1 | AT1G02000 | 24.438 | 356 | 222 | 13 | 28 | 351 | 92 | 432 | 1.23e-14 | 75.5 |
| MS.gene050527.t1 | AT3G14790 | 26.074 | 326 | 216 | 14 | 30 | 340 | 9 | 324 | 5.97e-13 | 70.9 |
| MS.gene050527.t1 | AT3G14790 | 26.074 | 326 | 216 | 14 | 30 | 340 | 12 | 327 | 6.66e-13 | 70.5 |
| MS.gene050527.t1 | AT3G23820 | 23.823 | 361 | 221 | 15 | 28 | 348 | 112 | 458 | 1.64e-12 | 68.9 |
| MS.gene050527.t1 | AT4G30440 | 23.529 | 340 | 214 | 12 | 28 | 334 | 88 | 414 | 2.21e-12 | 68.6 |
| MS.gene050527.t1 | AT1G53500 | 25.455 | 330 | 213 | 14 | 30 | 340 | 11 | 326 | 6.13e-12 | 67.4 |
Find 111 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATTATAACAAAGATTT+TGG | 0.185817 | 7.4:+2457929 | MS.gene050527:CDS |
| GTTTCCAACTGTTTGAATTC+AGG | 0.202846 | 7.4:-2457718 | None:intergenic |
| AGTTCCATCTTGTTGATCTT+AGG | 0.236542 | 7.4:+2457064 | MS.gene050527:CDS |
| GGCTTAGAATTACATACTTT+TGG | 0.241436 | 7.4:+2459917 | MS.gene050527:CDS |
| TTTCAATCTTGCTGCTGATA+TGG | 0.252773 | 7.4:+2457131 | MS.gene050527:CDS |
| AAGCTAAGAATTTCCATTAC+TGG | 0.266863 | 7.4:+2456925 | MS.gene050527:CDS |
| TCTTGTTGATCTTAGGGTTA+TGG | 0.275401 | 7.4:+2457071 | MS.gene050527:CDS |
| CATAACATATACGGCCCTTT+TGG | 0.311202 | 7.4:+2457977 | MS.gene050527:CDS |
| ATGGCTCTCTCTCAAGGTTT+TGG | 0.316832 | 7.4:-2456888 | None:intergenic |
| ATTGAAGCTGCTAGGATTAA+TGG | 0.333537 | 7.4:+2457225 | MS.gene050527:CDS |
| TTGCGCAGAATGGGAAGTTC+TGG | 0.340402 | 7.4:+2456838 | None:intergenic |
| CGAAGTGAACCTAGTTGAAC+AGG | 0.343532 | 7.4:-2460024 | None:intergenic |
| TTCAATCTTGCTGCTGATAT+GGG | 0.352299 | 7.4:+2457132 | MS.gene050527:CDS |
| GATTGACTAAATCAGACTTC+CGG | 0.353153 | 7.4:+2458756 | MS.gene050527:intron |
| AATACCTTCAACTTCATTGT+TGG | 0.357453 | 7.4:-2458947 | None:intergenic |
| TTCCGGGAGCCAGTGAATAT+TGG | 0.369817 | 7.4:+2458773 | MS.gene050527:CDS |
| TTCCAGCCACAAGATGCATA+TGG | 0.370660 | 7.4:+2457875 | MS.gene050527:intron |
| ATTGACTAAATCAGACTTCC+GGG | 0.372161 | 7.4:+2458757 | MS.gene050527:CDS |
| GTTCCATCTTGTTGATCTTA+GGG | 0.392044 | 7.4:+2457065 | MS.gene050527:CDS |
| ATTACATTATTGCTTCTGAT+TGG | 0.392690 | 7.4:+2457001 | MS.gene050527:CDS |
| ATACATAATGACAGAATGAT+TGG | 0.394363 | 7.4:-2457175 | None:intergenic |
| CAAAAGGGCCGTATATGTTA+TGG | 0.395238 | 7.4:-2457976 | None:intergenic |
| ACCTTGAGAGAGAGCCATAT+TGG | 0.402395 | 7.4:+2456893 | MS.gene050527:CDS |
| TTTCCAACTGTTTGAATTCA+GGG | 0.404484 | 7.4:-2457717 | None:intergenic |
| CTGTGGAAGTAAGTGTCTTT+CGG | 0.410596 | 7.4:-2458200 | None:intergenic |
| GGGCGGTTCCATAACATATA+CGG | 0.411031 | 7.4:+2457968 | MS.gene050527:CDS |
| TGCTGCTGATATGGGTGGGA+TGG | 0.411073 | 7.4:+2457140 | MS.gene050527:CDS |
| GACCAACAACAAACCTCAGC+AGG | 0.427378 | 7.4:-2457772 | None:intergenic |
| GCCAATATGGCTCTCTCTCA+AGG | 0.433604 | 7.4:-2456894 | None:intergenic |
| AGAATTTCCATTACTGGTGC+TGG | 0.433626 | 7.4:+2456931 | MS.gene050527:CDS |
| CGACATCCTTAGTAACTTTG+AGG | 0.437723 | 7.4:-2457101 | None:intergenic |
| TTGCGGCCACGAACACCCTC+TGG | 0.442633 | 7.4:-2458884 | None:intergenic |
| AGTTCTGGAACAAACGACTA+TGG | 0.445353 | 7.4:+2456853 | MS.gene050527:CDS |
| ATACCCATCCAACACATTCC+TGG | 0.445847 | 7.4:+2458860 | MS.gene050527:CDS |
| TTCATTGACGAGTGTGTTGA+AGG | 0.448729 | 7.4:+2458270 | MS.gene050527:CDS |
| TTGGAATTGAGTGCCGCATT+GGG | 0.450298 | 7.4:+2457948 | MS.gene050527:CDS |
| TCCAGCCACAAGATGCATAT+GGG | 0.456498 | 7.4:+2457876 | MS.gene050527:intron |
| CTAGGATTAATGGTGTTAAG+AGG | 0.463596 | 7.4:+2457235 | MS.gene050527:CDS |
| CACAGATAAATTTGAGATGT+GGG | 0.465937 | 7.4:+2458218 | MS.gene050527:CDS |
| TGTTCAACTAGGTTCACTTC+GGG | 0.469995 | 7.4:+2460026 | MS.gene050527:CDS |
| AAATTTGAGATGTGGGGAGA+TGG | 0.478216 | 7.4:+2458225 | MS.gene050527:CDS |
| GGCTGATGCCTGGCCTGCTG+AGG | 0.481849 | 7.4:+2457759 | MS.gene050527:CDS |
| TCGTCACTTCCAATATTCAC+TGG | 0.484294 | 7.4:-2458782 | None:intergenic |
| GCTGCTGATATGGGTGGGAT+GGG | 0.485557 | 7.4:+2457141 | MS.gene050527:CDS |
| CTGTTCAACTAGGTTCACTT+CGG | 0.486306 | 7.4:+2460025 | MS.gene050527:CDS |
| TTGTTCGTCGCACAGGTGGA+AGG | 0.490310 | 7.4:+2458154 | MS.gene050527:intron |
| GAATATTGGAAGTGACGAAA+TGG | 0.492369 | 7.4:+2458787 | MS.gene050527:CDS |
| CCTGGTCCAGAGGGTGTTCG+TGG | 0.493108 | 7.4:+2458878 | MS.gene050527:CDS |
| ATACCTTTCCATGTACCAAA+AGG | 0.493262 | 7.4:-2457992 | None:intergenic |
| GCTTGAAGGAGGCTGATGCC+TGG | 0.494249 | 7.4:+2457749 | MS.gene050527:CDS |
| CCACGAACACCCTCTGGACC+AGG | 0.495598 | 7.4:-2458878 | None:intergenic |
| TCGCACAGGTGGAAGGGAAA+AGG | 0.497508 | 7.4:+2458161 | MS.gene050527:intron |
| ACAACAAACCTCAGCAGGCC+AGG | 0.498680 | 7.4:-2457767 | None:intergenic |
| GCCACAAGATGCATATGGGC+TGG | 0.501504 | 7.4:+2457880 | MS.gene050527:intron |
| GGTGTTGATGTAACATCCTA+TGG | 0.504451 | 7.4:+2459973 | MS.gene050527:CDS |
| TTCCAATATTCACTGGCTCC+CGG | 0.506890 | 7.4:-2458775 | None:intergenic |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 7.4:+2458943 | MS.gene050527:CDS |
| AAATCCACCAGCACCAGTAA+TGG | 0.510988 | 7.4:-2456938 | None:intergenic |
| AGTGTGTTGAAGGCGTGCTT+AGG | 0.512253 | 7.4:+2458280 | MS.gene050527:CDS |
| AATCAGAAGCAATAATGTAA+TGG | 0.514034 | 7.4:-2456999 | None:intergenic |
| TTTGGAATTGAGTGCCGCAT+TGG | 0.517604 | 7.4:+2457947 | MS.gene050527:CDS |
| CCACAGATAAATTTGAGATG+TGG | 0.517863 | 7.4:+2458217 | MS.gene050527:CDS |
| CTACCCTGAATTCAAACAGT+TGG | 0.519009 | 7.4:+2457714 | MS.gene050527:CDS |
| AATCTTGCTGCTGATATGGG+TGG | 0.525081 | 7.4:+2457135 | MS.gene050527:CDS |
| TAATGACAGAATGATTGGAT+TGG | 0.525124 | 7.4:-2457170 | None:intergenic |
| TAATTGCCTCAAAGTTACTA+AGG | 0.532121 | 7.4:+2457095 | MS.gene050527:CDS |
| CTTAAGACGGCGAGCAATGT+GGG | 0.532266 | 7.4:-2456968 | None:intergenic |
| TCCAGCCCATATGCATCTTG+TGG | 0.539478 | 7.4:-2457881 | None:intergenic |
| ATTTCCATTACTGGTGCTGG+TGG | 0.540705 | 7.4:+2456934 | MS.gene050527:CDS |
| TTATCAAAGAGAAACTTGGC+TGG | 0.541202 | 7.4:+2458921 | MS.gene050527:CDS |
| TTCAACACACTCGTCAATGA+AGG | 0.543320 | 7.4:-2458268 | None:intergenic |
| GGAAACAAATGTGAGCTTGA+AGG | 0.543901 | 7.4:+2457735 | MS.gene050527:CDS |
| CAGCTTGAGAAAGAGAAGGC+TGG | 0.546482 | 7.4:+2459949 | MS.gene050527:CDS |
| ACTCAAGCCCCTGTTCAACT+AGG | 0.554112 | 7.4:+2460015 | MS.gene050527:CDS |
| TACCTTTCCATGTACCAAAA+GGG | 0.556614 | 7.4:-2457991 | None:intergenic |
| ATCTTGCTGCTGATATGGGT+GGG | 0.558451 | 7.4:+2457136 | MS.gene050527:CDS |
| GGCTTGAGTCGATACCACTT+TGG | 0.561236 | 7.4:-2460001 | None:intergenic |
| ACACTTATCAAAGAGAAACT+TGG | 0.564802 | 7.4:+2458917 | MS.gene050527:CDS |
| GGTTCACTTCGGGCTGCAGA+TGG | 0.567966 | 7.4:+2460036 | MS.gene050527:CDS |
| GCTGCAGATGGCAATGAATG+AGG | 0.572119 | 7.4:+2460048 | MS.gene050527:CDS |
| TCAATATGATTGAAGCTGCT+AGG | 0.580779 | 7.4:+2457217 | MS.gene050527:CDS |
| AGCAATAATGTAATGGCCCT+CGG | 0.581156 | 7.4:-2456992 | None:intergenic |
| TAACCCTAAGATCAACAAGA+TGG | 0.582222 | 7.4:-2457068 | None:intergenic |
| TGGACCAGGAATGTGTTGGA+TGG | 0.589910 | 7.4:-2458864 | None:intergenic |
| TGTTCGTCGCACAGGTGGAA+GGG | 0.590103 | 7.4:+2458155 | MS.gene050527:intron |
| GAATTGAGTGCCGCATTGGG+CGG | 0.593320 | 7.4:+2457951 | MS.gene050527:CDS |
| TCTTAAGACGGCGAGCAATG+TGG | 0.603116 | 7.4:-2456969 | None:intergenic |
| TACCACTTTGGATGATCCAT+AGG | 0.605260 | 7.4:-2459989 | None:intergenic |
| GGACCAGGAATGTGTTGGAT+GGG | 0.608980 | 7.4:-2458863 | None:intergenic |
| CCACATCTCAAATTTATCTG+TGG | 0.609197 | 7.4:-2458217 | None:intergenic |
| CCAACACATTCCTGGTCCAG+AGG | 0.619158 | 7.4:+2458868 | MS.gene050527:CDS |
| CAACACATTCCTGGTCCAGA+GGG | 0.621739 | 7.4:+2458869 | MS.gene050527:CDS |
| TGCTCGCCGTCTTAAGACCG+AGG | 0.623060 | 7.4:+2456975 | MS.gene050527:CDS |
| AGGGTAGATACAAGCACTAG+AGG | 0.626056 | 7.4:-2457698 | None:intergenic |
| AATGGCCCTCGGTCTTAAGA+CGG | 0.626199 | 7.4:-2456981 | None:intergenic |
| ACAGATAAATTTGAGATGTG+GGG | 0.627741 | 7.4:+2458219 | MS.gene050527:CDS |
| TATCAAAGAGAAACTTGGCT+GGG | 0.631951 | 7.4:+2458922 | MS.gene050527:CDS |
| GCTCGCCGTCTTAAGACCGA+GGG | 0.637185 | 7.4:+2456976 | MS.gene050527:CDS |
| CCTCTGGACCAGGAATGTGT+TGG | 0.642759 | 7.4:-2458868 | None:intergenic |
| AGAGCAGCTTGAGAAAGAGA+AGG | 0.646063 | 7.4:+2459945 | MS.gene050527:CDS |
| GAAGAATGAGCACATGACTG+AGG | 0.648944 | 7.4:+2457026 | MS.gene050527:CDS |
| ACACTCGTCAATGAAGGTGA+AGG | 0.659902 | 7.4:-2458262 | None:intergenic |
| ATCCTATGGATCATCCAAAG+TGG | 0.669201 | 7.4:+2459987 | MS.gene050527:CDS |
| GAAGTGAACCTAGTTGAACA+GGG | 0.670267 | 7.4:-2460023 | None:intergenic |
| CTTGAGAAAGAGAAGGCTGG+AGG | 0.670675 | 7.4:+2459952 | MS.gene050527:CDS |
| AATGGTTAGCATGAATGAGA+TGG | 0.673558 | 7.4:+2458805 | MS.gene050527:CDS |
| AACAAATGTGAGCTTGAAGG+AGG | 0.696219 | 7.4:+2457738 | MS.gene050527:CDS |
| AAGACGGCGAGCAATGTGGG+AGG | 0.698789 | 7.4:-2456965 | None:intergenic |
| AAGTGAACCTAGTTGAACAG+GGG | 0.722747 | 7.4:-2460022 | None:intergenic |
| TGTTATGGAACCGCCCAATG+CGG | 0.735755 | 7.4:-2457961 | None:intergenic |
| TAAGTGTATTGTCTGAATTG+CGG | 0.744809 | 7.4:-2458901 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTTTATTTTTTGT+AGG | + | chr7.4:2457665-2457684 | MS.gene050527:intron | 10.0% |
| !! | AAGTAAAGAAGAAAAAATAA+AGG | - | chr7.4:2459194-2459213 | None:intergenic | 15.0% |
| !! | AATTTCAAAAAGAAAAACTA+CGG | - | chr7.4:2458357-2458376 | None:intergenic | 15.0% |
| !! | TATACAAAGAAAACTAAATT+TGG | + | chr7.4:2458647-2458666 | MS.gene050527:intron | 15.0% |
| !! | TTGCTTTATAGAATTTATTT+AGG | + | chr7.4:2459003-2459022 | MS.gene050527:intron | 15.0% |
| !! | TTGTGAATAGAAATTATTAA+TGG | - | chr7.4:2458435-2458454 | None:intergenic | 15.0% |
| !!! | ATTAAGTTGTTTATCTAAAT+AGG | + | chr7.4:2457468-2457487 | MS.gene050527:intron | 15.0% |
| !!! | TTAAGTTGTTTATCTAAATA+GGG | + | chr7.4:2457469-2457488 | MS.gene050527:intron | 15.0% |
| !!! | TTAGTTATCTCATATTTTTA+AGG | + | chr7.4:2457258-2457277 | MS.gene050527:intron | 15.0% |
| !! | AATTCTATAAAGCAAAAACA+AGG | - | chr7.4:2458998-2459017 | None:intergenic | 20.0% |
| !! | ATTCTGATATTATTATAGGA+TGG | + | chr7.4:2459895-2459914 | MS.gene050527:intron | 20.0% |
| !! | ATTTCAAAAAGAAAAACTAC+GGG | - | chr7.4:2458356-2458375 | None:intergenic | 20.0% |
| !! | CTCAATTCTGATATTATTAT+AGG | + | chr7.4:2459891-2459910 | MS.gene050527:intron | 20.0% |
| !! | GTTTATAAGATGAAACAAAA+GGG | - | chr7.4:2459078-2459097 | None:intergenic | 20.0% |
| !! | TTCTGATATTATTATAGGAT+GGG | + | chr7.4:2459896-2459915 | MS.gene050527:intron | 20.0% |
| !!! | AAGCATTATAACAAAGATTT+TGG | + | chr7.4:2457929-2457948 | MS.gene050527:CDS | 20.0% |
| ! | AATCAGAAGCAATAATGTAA+TGG | - | chr7.4:2457002-2457021 | None:intergenic | 25.0% |
| ! | AATTCCAATCATTCAAGATT+TGG | + | chr7.4:2458526-2458545 | MS.gene050527:intron | 25.0% |
| ! | AATTCTATAGATGCTTAAGT+AGG | + | chr7.4:2458493-2458512 | MS.gene050527:intron | 25.0% |
| ! | AGCATACAAAACATAAATGA+CGG | - | chr7.4:2458072-2458091 | None:intergenic | 25.0% |
| ! | ATACATAATGACAGAATGAT+TGG | - | chr7.4:2457178-2457197 | None:intergenic | 25.0% |
| ! | ATTACATTATTGCTTCTGAT+TGG | + | chr7.4:2457001-2457020 | MS.gene050527:CDS | 25.0% |
| ! | ATTCCAATCATTCAAGATTT+GGG | + | chr7.4:2458527-2458546 | MS.gene050527:intron | 25.0% |
| ! | CAAATAAGCATAGTGATATT+TGG | - | chr7.4:2459653-2459672 | None:intergenic | 25.0% |
| ! | GGTTTATAAGATGAAACAAA+AGG | - | chr7.4:2459079-2459098 | None:intergenic | 25.0% |
| ! | GTGGGATATATATTTATTTG+TGG | - | chr7.4:2459471-2459490 | None:intergenic | 25.0% |
| ! | TCTCAAGAAAATATAACATC+AGG | - | chr7.4:2459157-2459176 | None:intergenic | 25.0% |
| ! | TCTGATTTAGTCAATCTAAA+AGG | - | chr7.4:2458752-2458771 | None:intergenic | 25.0% |
| ! | TTTGTGCGTGTAATATATAT+TGG | + | chr7.4:2459757-2459776 | MS.gene050527:intron | 25.0% |
| !! | AGCTGAATTTTAAATTTTGC+AGG | + | chr7.4:2458021-2458040 | MS.gene050527:intron | 25.0% |
| !! | ATAATAGTTAAGAGCATATG+AGG | - | chr7.4:2459571-2459590 | None:intergenic | 25.0% |
| !! | TTAGGTTAGTTCTTATTTCT+TGG | + | chr7.4:2458693-2458712 | MS.gene050527:intron | 25.0% |
| !!! | ATTGTTATTTTTGGTTATGC+TGG | + | chr7.4:2457800-2457819 | MS.gene050527:intron | 25.0% |
| !!! | GGTCTTTGAATTGTTATTTT+TGG | + | chr7.4:2457791-2457810 | MS.gene050527:intron | 25.0% |
| AAGCTAAGAATTTCCATTAC+TGG | + | chr7.4:2456925-2456944 | MS.gene050527:CDS | 30.0% | |
| AATACCTTCAACTTCATTGT+TGG | - | chr7.4:2458950-2458969 | None:intergenic | 30.0% | |
| ACACTTATCAAAGAGAAACT+TGG | + | chr7.4:2458917-2458936 | MS.gene050527:CDS | 30.0% | |
| ATCATGTATTGCAGAACAAT+TGG | + | chr7.4:2459694-2459713 | MS.gene050527:intron | 30.0% | |
| ATTCTCACTTAATACACAGT+GGG | - | chr7.4:2459489-2459508 | None:intergenic | 30.0% | |
| GAAAATGATCAAATATGGCA+GGG | - | chr7.4:2459100-2459119 | None:intergenic | 30.0% | |
| TAAGTGTATTGTCTGAATTG+CGG | - | chr7.4:2458904-2458923 | None:intergenic | 30.0% | |
| TAATGACAGAATGATTGGAT+TGG | - | chr7.4:2457173-2457192 | None:intergenic | 30.0% | |
| TAATTGCCTCAAAGTTACTA+AGG | + | chr7.4:2457095-2457114 | MS.gene050527:CDS | 30.0% | |
| TCATGTATTGCAGAACAATT+GGG | + | chr7.4:2459695-2459714 | MS.gene050527:intron | 30.0% | |
| TCCACAATAAACTGAACTAA+TGG | - | chr7.4:2459039-2459058 | None:intergenic | 30.0% | |
| TCCATTAGTTCAGTTTATTG+TGG | + | chr7.4:2459035-2459054 | MS.gene050527:intron | 30.0% | |
| TGAGGGAAAATGATCAAATA+TGG | - | chr7.4:2459105-2459124 | None:intergenic | 30.0% | |
| TGGTTATTCATTTGTACACT+CGG | + | chr7.4:2457820-2457839 | MS.gene050527:intron | 30.0% | |
| TTCTTTGTATACAACCACAT+AGG | - | chr7.4:2458638-2458657 | None:intergenic | 30.0% | |
| TTTCCAACTGTTTGAATTCA+GGG | - | chr7.4:2457720-2457739 | None:intergenic | 30.0% | |
| ! | ACAGATAAATTTGAGATGTG+GGG | + | chr7.4:2458219-2458238 | MS.gene050527:CDS | 30.0% |
| ! | CACAGATAAATTTGAGATGT+GGG | + | chr7.4:2458218-2458237 | MS.gene050527:CDS | 30.0% |
| ! | GCTTTCTGTATATCTGTTTT+AGG | + | chr7.4:2458675-2458694 | MS.gene050527:intron | 30.0% |
| ! | GCTTTTATGAACGATGAAAA+TGG | + | chr7.4:2458391-2458410 | MS.gene050527:intron | 30.0% |
| ! | GGCTTAGAATTACATACTTT+TGG | + | chr7.4:2459917-2459936 | MS.gene050527:CDS | 30.0% |
| !! | GAAATTCTTAGCTTTTCTGT+TGG | - | chr7.4:2456919-2456938 | None:intergenic | 30.0% |
| AAGCCCAAATCTTGAATGAT+TGG | - | chr7.4:2458533-2458552 | None:intergenic | 35.0% | |
| AATGGTTAGCATGAATGAGA+TGG | + | chr7.4:2458805-2458824 | MS.gene050527:CDS | 35.0% | |
| AGAATACAGACCCATTAACA+CGG | - | chr7.4:2459804-2459823 | None:intergenic | 35.0% | |
| AGCAGTACAAATGTTTGTGT+TGG | - | chr7.4:2457307-2457326 | None:intergenic | 35.0% | |
| AGTCGTATGAGAGAACATTA+TGG | + | chr7.4:2457496-2457515 | MS.gene050527:intron | 35.0% | |
| AGTTCCATCTTGTTGATCTT+AGG | + | chr7.4:2457064-2457083 | MS.gene050527:CDS | 35.0% | |
| ATACCTTTCCATGTACCAAA+AGG | - | chr7.4:2457995-2458014 | None:intergenic | 35.0% | |
| ATGAGTAAACATATGTGGTG+TGG | + | chr7.4:2457599-2457618 | MS.gene050527:intron | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | + | chr7.4:2457225-2457244 | MS.gene050527:CDS | 35.0% | |
| ATTGACTAAATCAGACTTCC+GGG | + | chr7.4:2458757-2458776 | MS.gene050527:CDS | 35.0% | |
| CATTCTCACTTAATACACAG+TGG | - | chr7.4:2459490-2459509 | None:intergenic | 35.0% | |
| CCACATCTCAAATTTATCTG+TGG | - | chr7.4:2458220-2458239 | None:intergenic | 35.0% | |
| GAATATTGGAAGTGACGAAA+TGG | + | chr7.4:2458787-2458806 | MS.gene050527:CDS | 35.0% | |
| GATTGACTAAATCAGACTTC+CGG | + | chr7.4:2458756-2458775 | MS.gene050527:intron | 35.0% | |
| GGAAAATGATCAAATATGGC+AGG | - | chr7.4:2459101-2459120 | None:intergenic | 35.0% | |
| GGTTATTCATTTGTACACTC+GGG | + | chr7.4:2457821-2457840 | MS.gene050527:intron | 35.0% | |
| GTGTATTAAGTGAGAATGCA+AGG | + | chr7.4:2459492-2459511 | MS.gene050527:intron | 35.0% | |
| GTTCCATCTTGTTGATCTTA+GGG | + | chr7.4:2457065-2457084 | MS.gene050527:CDS | 35.0% | |
| GTTTCCAACTGTTTGAATTC+AGG | - | chr7.4:2457721-2457740 | None:intergenic | 35.0% | |
| TAACCCTAAGATCAACAAGA+TGG | - | chr7.4:2457071-2457090 | None:intergenic | 35.0% | |
| TACCTTTCCATGTACCAAAA+GGG | - | chr7.4:2457994-2458013 | None:intergenic | 35.0% | |
| TATCAAAGAGAAACTTGGCT+GGG | + | chr7.4:2458922-2458941 | MS.gene050527:CDS | 35.0% | |
| TATTAAGTGAGAATGCAAGG+AGG | + | chr7.4:2459495-2459514 | MS.gene050527:intron | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | + | chr7.4:2457217-2457236 | MS.gene050527:CDS | 35.0% | |
| TCTTGTTGATCTTAGGGTTA+TGG | + | chr7.4:2457071-2457090 | MS.gene050527:CDS | 35.0% | |
| TGTCGATGAGTAAACATATG+TGG | + | chr7.4:2457594-2457613 | MS.gene050527:intron | 35.0% | |
| TTATCAAAGAGAAACTTGGC+TGG | + | chr7.4:2458921-2458940 | MS.gene050527:CDS | 35.0% | |
| TTCAATCTTGCTGCTGATAT+GGG | + | chr7.4:2457132-2457151 | MS.gene050527:CDS | 35.0% | |
| TTCCCTCAAGAAAAGAGTAA+CGG | + | chr7.4:2459117-2459136 | MS.gene050527:intron | 35.0% | |
| TTTCAATCTTGCTGCTGATA+TGG | + | chr7.4:2457131-2457150 | MS.gene050527:CDS | 35.0% | |
| TTTGACATGTGAATCAGTGT+TGG | - | chr7.4:2459330-2459349 | None:intergenic | 35.0% | |
| ! | ATTCCGTTACTCTTTTCTTG+AGG | - | chr7.4:2459123-2459142 | None:intergenic | 35.0% |
| ! | CCACAGATAAATTTGAGATG+TGG | + | chr7.4:2458217-2458236 | MS.gene050527:CDS | 35.0% |
| ! | CTAGGATTAATGGTGTTAAG+AGG | + | chr7.4:2457235-2457254 | MS.gene050527:CDS | 35.0% |
| ! | TTCCGTTACTCTTTTCTTGA+GGG | - | chr7.4:2459122-2459141 | None:intergenic | 35.0% |
| ! | TTTTCCATAATCGACAACAC+TGG | - | chr7.4:2459619-2459638 | None:intergenic | 35.0% |
| !! | ATTAGCCTTAGACATGACTT+CGG | + | chr7.4:2459397-2459416 | MS.gene050527:intron | 35.0% |
| !!! | GTTAGTTTTGACAGATCATG+TGG | - | chr7.4:2459547-2459566 | None:intergenic | 35.0% |
| AAACTTAAGACCTGCCTATG+TGG | + | chr7.4:2458621-2458640 | MS.gene050527:intron | 40.0% | |
| AACAAATGTGAGCTTGAAGG+AGG | + | chr7.4:2457738-2457757 | MS.gene050527:CDS | 40.0% | |
| AAGTGAACCTAGTTGAACAG+GGG | - | chr7.4:2460025-2460044 | None:intergenic | 40.0% | |
| AGAATTTCCATTACTGGTGC+TGG | + | chr7.4:2456931-2456950 | MS.gene050527:CDS | 40.0% | |
| AGCAATAATGTAATGGCCCT+CGG | - | chr7.4:2456995-2457014 | None:intergenic | 40.0% | |
| ATCCTATGGATCATCCAAAG+TGG | + | chr7.4:2459987-2460006 | MS.gene050527:CDS | 40.0% | |
| ATGTATCTTACCCCACTTAG+TGG | + | chr7.4:2457532-2457551 | MS.gene050527:intron | 40.0% | |
| ATTCGTTGTCTGTGCTTCAT+TGG | + | chr7.4:2459831-2459850 | MS.gene050527:intron | 40.0% | |
| CAAAAGGGCCGTATATGTTA+TGG | - | chr7.4:2457979-2457998 | None:intergenic | 40.0% | |
| CACCAACACTTTCCTTCATA+AGG | + | chr7.4:2459282-2459301 | MS.gene050527:intron | 40.0% | |
| CGACATCCTTAGTAACTTTG+AGG | - | chr7.4:2457104-2457123 | None:intergenic | 40.0% | |
| CTACCCTGAATTCAAACAGT+TGG | + | chr7.4:2457714-2457733 | MS.gene050527:CDS | 40.0% | |
| CTGTGGAAGTAAGTGTCTTT+CGG | - | chr7.4:2458203-2458222 | None:intergenic | 40.0% | |
| CTGTTCAACTAGGTTCACTT+CGG | + | chr7.4:2460025-2460044 | MS.gene050527:CDS | 40.0% | |
| GAAGTGAACCTAGTTGAACA+GGG | - | chr7.4:2460026-2460045 | None:intergenic | 40.0% | |
| GGAAACAAATGTGAGCTTGA+AGG | + | chr7.4:2457735-2457754 | MS.gene050527:CDS | 40.0% | |
| GGAGGTGAGTTAGTTAATCT+TGG | + | chr7.4:2459513-2459532 | MS.gene050527:intron | 40.0% | |
| TAAACATATGTGGTGTGGAG+TGG | + | chr7.4:2457604-2457623 | MS.gene050527:intron | 40.0% | |
| TACCACTTTGGATGATCCAT+AGG | - | chr7.4:2459992-2460011 | None:intergenic | 40.0% | |
| TCGTCACTTCCAATATTCAC+TGG | - | chr7.4:2458785-2458804 | None:intergenic | 40.0% | |
| TGACAGATCATGTGGTTGTA+TGG | - | chr7.4:2459539-2459558 | None:intergenic | 40.0% | |
| TGGAGTGGTGTCTATTTCAA+CGG | + | chr7.4:2457619-2457638 | MS.gene050527:intron | 40.0% | |
| TGTATCTTACCCCACTTAGT+GGG | + | chr7.4:2457533-2457552 | MS.gene050527:intron | 40.0% | |
| TGTTCAACTAGGTTCACTTC+GGG | + | chr7.4:2460026-2460045 | MS.gene050527:CDS | 40.0% | |
| TTCAACACACTCGTCAATGA+AGG | - | chr7.4:2458271-2458290 | None:intergenic | 40.0% | |
| TTCATTGACGAGTGTGTTGA+AGG | + | chr7.4:2458270-2458289 | MS.gene050527:CDS | 40.0% | |
| TTCATTTGTACACTCGGGTT+AGG | + | chr7.4:2457826-2457845 | MS.gene050527:intron | 40.0% | |
| TTGTATACAACCACATAGGC+AGG | - | chr7.4:2458634-2458653 | None:intergenic | 40.0% | |
| TTTGAGAGAGCTTACGGATA+TGG | + | chr7.4:2457328-2457347 | MS.gene050527:intron | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | + | chr7.4:2458225-2458244 | MS.gene050527:CDS | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr7.4:2457545-2457564 | None:intergenic | 40.0% |
| ! | AGCTTTTCTGTTGGCCAATA+TGG | - | chr7.4:2456910-2456929 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr7.4:2457546-2457565 | None:intergenic | 40.0% |
| ! | CACCTTATGAAGGAAAGTGT+TGG | - | chr7.4:2459287-2459306 | None:intergenic | 40.0% |
| ! | CATAACATATACGGCCCTTT+TGG | + | chr7.4:2457977-2457996 | MS.gene050527:CDS | 40.0% |
| ! | TAGACCAGTGTTGTCGATTA+TGG | + | chr7.4:2459612-2459631 | MS.gene050527:intron | 40.0% |
| ! | TCATGTCTAAGGCTAATCGA+AGG | - | chr7.4:2459394-2459413 | None:intergenic | 40.0% |
| !! | AGTTCTGGAACAAACGACTA+TGG | + | chr7.4:2456853-2456872 | MS.gene050527:CDS | 40.0% |
| !! | CAGGTCTTAAGTTTTGTGAG+AGG | - | chr7.4:2458615-2458634 | None:intergenic | 40.0% |
| !! | GGTGTTGATGTAACATCCTA+TGG | + | chr7.4:2459973-2459992 | MS.gene050527:CDS | 40.0% |
| AAATCCACCAGCACCAGTAA+TGG | - | chr7.4:2456941-2456960 | None:intergenic | 45.0% | |
| AATCTTGCTGCTGATATGGG+TGG | + | chr7.4:2457135-2457154 | MS.gene050527:CDS | 45.0% | |
| ACACTCGTCAATGAAGGTGA+AGG | - | chr7.4:2458265-2458284 | None:intergenic | 45.0% | |
| ACATAGCTGACACTCGAGTT+AGG | + | chr7.4:2459427-2459446 | MS.gene050527:intron | 45.0% | |
| ACCTTGAGAGAGAGCCATAT+TGG | + | chr7.4:2456893-2456912 | MS.gene050527:CDS | 45.0% | |
| AGAGCAGCTTGAGAAAGAGA+AGG | + | chr7.4:2459945-2459964 | MS.gene050527:CDS | 45.0% | |
| AGGGTAGATACAAGCACTAG+AGG | - | chr7.4:2457701-2457720 | None:intergenic | 45.0% | |
| ATACCCATCCAACACATTCC+TGG | + | chr7.4:2458860-2458879 | MS.gene050527:CDS | 45.0% | |
| ATCTTGCTGCTGATATGGGT+GGG | + | chr7.4:2457136-2457155 | MS.gene050527:CDS | 45.0% | |
| CAATAGACACGAGATCAGCA+TGG | - | chr7.4:2458311-2458330 | None:intergenic | 45.0% | |
| CACGGACGGTGTCTAAATAA+AGG | - | chr7.4:2459786-2459805 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr7.4:2457544-2457563 | MS.gene050527:intron | 45.0% | |
| CGAAGTGAACCTAGTTGAAC+AGG | - | chr7.4:2460027-2460046 | None:intergenic | 45.0% | |
| CTCGAGTTAGGTCTGATAGA+TGG | + | chr7.4:2459439-2459458 | MS.gene050527:intron | 45.0% | |
| GAAGAATGAGCACATGACTG+AGG | + | chr7.4:2457026-2457045 | MS.gene050527:CDS | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | + | chr7.4:2458943-2458962 | MS.gene050527:CDS | 45.0% | |
| GGGCGGTTCCATAACATATA+CGG | + | chr7.4:2457968-2457987 | MS.gene050527:CDS | 45.0% | |
| GTGTTGGAAATGTGTCTGAC+AGG | - | chr7.4:2459314-2459333 | None:intergenic | 45.0% | |
| TACAGACCCATTAACACGGA+CGG | - | chr7.4:2459800-2459819 | None:intergenic | 45.0% | |
| TAGACACCGTCCGTGTTAAT+GGG | + | chr7.4:2459791-2459810 | MS.gene050527:intron | 45.0% | |
| TCCAGCCACAAGATGCATAT+GGG | + | chr7.4:2457876-2457895 | MS.gene050527:intron | 45.0% | |
| TTAGACACCGTCCGTGTTAA+TGG | + | chr7.4:2459790-2459809 | MS.gene050527:intron | 45.0% | |
| TTCCAGCCACAAGATGCATA+TGG | + | chr7.4:2457875-2457894 | MS.gene050527:intron | 45.0% | |
| ! | ATGGCTCTCTCTCAAGGTTT+TGG | - | chr7.4:2456891-2456910 | None:intergenic | 45.0% |
| ! | ATTTCCATTACTGGTGCTGG+TGG | + | chr7.4:2456934-2456953 | MS.gene050527:CDS | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr7.4:2457547-2457566 | None:intergenic | 45.0% |
| ! | CTGCTGTTTGAGAGAGCTTA+CGG | + | chr7.4:2457322-2457341 | MS.gene050527:intron | 45.0% |
| ! | GACAGGTTGACACCTTATGA+AGG | - | chr7.4:2459297-2459316 | None:intergenic | 45.0% |
| ! | TATACGGCCCTTTTGGTACA+TGG | + | chr7.4:2457984-2458003 | MS.gene050527:CDS | 45.0% |
| ! | TTGGAATTGAGTGCCGCATT+GGG | + | chr7.4:2457948-2457967 | MS.gene050527:CDS | 45.0% |
| ! | TTTGGAATTGAGTGCCGCAT+TGG | + | chr7.4:2457947-2457966 | MS.gene050527:CDS | 45.0% |
| !! | TTCCAATATTCACTGGCTCC+CGG | - | chr7.4:2458778-2458797 | None:intergenic | 45.0% |
| AATGGCCCTCGGTCTTAAGA+CGG | - | chr7.4:2456984-2457003 | None:intergenic | 50.0% | |
| ACTCAAGCCCCTGTTCAACT+AGG | + | chr7.4:2460015-2460034 | MS.gene050527:CDS | 50.0% | |
| CAACACATTCCTGGTCCAGA+GGG | + | chr7.4:2458869-2458888 | MS.gene050527:CDS | 50.0% | |
| CAGCTTGAGAAAGAGAAGGC+TGG | + | chr7.4:2459949-2459968 | MS.gene050527:CDS | 50.0% | |
| CCAAGCCGAAGTCATGTCTA+AGG | - | chr7.4:2459405-2459424 | None:intergenic | 50.0% | |
| CCTTAGACATGACTTCGGCT+TGG | + | chr7.4:2459402-2459421 | MS.gene050527:intron | 50.0% | |
| CTTAAGACGGCGAGCAATGT+GGG | - | chr7.4:2456971-2456990 | None:intergenic | 50.0% | |
| CTTGAGAAAGAGAAGGCTGG+AGG | + | chr7.4:2459952-2459971 | MS.gene050527:CDS | 50.0% | |
| GACCAACAACAAACCTCAGC+AGG | - | chr7.4:2457775-2457794 | None:intergenic | 50.0% | |
| GCCAATATGGCTCTCTCTCA+AGG | - | chr7.4:2456897-2456916 | None:intergenic | 50.0% | |
| GGACCAGGAATGTGTTGGAT+GGG | - | chr7.4:2458866-2458885 | None:intergenic | 50.0% | |
| GGCTTGAGTCGATACCACTT+TGG | - | chr7.4:2460004-2460023 | None:intergenic | 50.0% | |
| GTCTTTCGGCAAAAAGCAGC+AGG | - | chr7.4:2458189-2458208 | None:intergenic | 50.0% | |
| TCCAGCCCATATGCATCTTG+TGG | - | chr7.4:2457884-2457903 | None:intergenic | 50.0% | |
| TCTTAAGACGGCGAGCAATG+TGG | - | chr7.4:2456972-2456991 | None:intergenic | 50.0% | |
| TGGACCAGGAATGTGTTGGA+TGG | - | chr7.4:2458867-2458886 | None:intergenic | 50.0% | |
| TGTTATGGAACCGCCCAATG+CGG | - | chr7.4:2457964-2457983 | None:intergenic | 50.0% | |
| TTCCGGGAGCCAGTGAATAT+TGG | + | chr7.4:2458773-2458792 | MS.gene050527:CDS | 50.0% | |
| ! | AGTGTGTTGAAGGCGTGCTT+AGG | + | chr7.4:2458280-2458299 | MS.gene050527:CDS | 50.0% |
| ! | GGCCCTTTTGGTACATGGAA+AGG | + | chr7.4:2457989-2458008 | MS.gene050527:CDS | 50.0% |
| !! | TTTGTTGTTCGTCGCACAGG+TGG | + | chr7.4:2458150-2458169 | MS.gene050527:intron | 50.0% |
| ACAACAAACCTCAGCAGGCC+AGG | - | chr7.4:2457770-2457789 | None:intergenic | 55.0% | |
| CCAACACATTCCTGGTCCAG+AGG | + | chr7.4:2458868-2458887 | MS.gene050527:CDS | 55.0% | |
| CCTCTGGACCAGGAATGTGT+TGG | - | chr7.4:2458871-2458890 | None:intergenic | 55.0% | |
| GCCACAAGATGCATATGGGC+TGG | + | chr7.4:2457880-2457899 | MS.gene050527:intron | 55.0% | |
| GCCCATATGCATCTTGTGGC+TGG | - | chr7.4:2457880-2457899 | None:intergenic | 55.0% | |
| GCTGCTGATATGGGTGGGAT+GGG | + | chr7.4:2457141-2457160 | MS.gene050527:CDS | 55.0% | |
| TCGCACAGGTGGAAGGGAAA+AGG | + | chr7.4:2458161-2458180 | MS.gene050527:intron | 55.0% | |
| TGCTGCTGATATGGGTGGGA+TGG | + | chr7.4:2457140-2457159 | MS.gene050527:CDS | 55.0% | |
| TGTTCGTCGCACAGGTGGAA+GGG | + | chr7.4:2458155-2458174 | MS.gene050527:intron | 55.0% | |
| TTGTTCGTCGCACAGGTGGA+AGG | + | chr7.4:2458154-2458173 | MS.gene050527:intron | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+CGG | + | chr7.4:2457951-2457970 | MS.gene050527:CDS | 55.0% |
| !! | CGCTTTGTTGTTCGTCGCAC+AGG | + | chr7.4:2458147-2458166 | MS.gene050527:intron | 55.0% |
| !! | GGCCTGCTGAGGTTTGTTGT+TGG | + | chr7.4:2457770-2457789 | MS.gene050527:intron | 55.0% |
| AAGACGGCGAGCAATGTGGG+AGG | - | chr7.4:2456968-2456987 | None:intergenic | 60.0% | |
| GCTCGCCGTCTTAAGACCGA+GGG | + | chr7.4:2456976-2456995 | MS.gene050527:CDS | 60.0% | |
| GCTTGAAGGAGGCTGATGCC+TGG | + | chr7.4:2457749-2457768 | MS.gene050527:CDS | 60.0% | |
| GGTTCACTTCGGGCTGCAGA+TGG | + | chr7.4:2460036-2460055 | MS.gene050527:CDS | 60.0% | |
| TGCTCGCCGTCTTAAGACCG+AGG | + | chr7.4:2456975-2456994 | MS.gene050527:CDS | 60.0% | |
| CCACGAACACCCTCTGGACC+AGG | - | chr7.4:2458881-2458900 | None:intergenic | 65.0% | |
| TTGCGGCCACGAACACCCTC+TGG | - | chr7.4:2458887-2458906 | None:intergenic | 65.0% | |
| !! | CCTGGTCCAGAGGGTGTTCG+TGG | + | chr7.4:2458878-2458897 | MS.gene050527:CDS | 65.0% |
| GGCTGATGCCTGGCCTGCTG+AGG | + | chr7.4:2457759-2457778 | MS.gene050527:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2456847 | 2460068 | 2456847 | ID=MS.gene050527 |
| chr7.4 | mRNA | 2456847 | 2460068 | 2456847 | ID=MS.gene050527.t1;Parent=MS.gene050527 |
| chr7.4 | exon | 2456847 | 2457256 | 2456847 | ID=MS.gene050527.t1.exon1;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2456847 | 2457256 | 2456847 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| chr7.4 | exon | 2457687 | 2457780 | 2457687 | ID=MS.gene050527.t1.exon2;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2457687 | 2457780 | 2457687 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| chr7.4 | exon | 2457881 | 2458010 | 2457881 | ID=MS.gene050527.t1.exon3;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2457881 | 2458010 | 2457881 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| chr7.4 | exon | 2458169 | 2458301 | 2458169 | ID=MS.gene050527.t1.exon4;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2458169 | 2458301 | 2458169 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| chr7.4 | exon | 2458757 | 2458964 | 2458757 | ID=MS.gene050527.t1.exon5;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2458757 | 2458964 | 2458757 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| chr7.4 | exon | 2459913 | 2460068 | 2459913 | ID=MS.gene050527.t1.exon6;Parent=MS.gene050527.t1 |
| chr7.4 | CDS | 2459913 | 2460068 | 2459913 | ID=cds.MS.gene050527.t1;Parent=MS.gene050527.t1 |
| Gene Sequence |
| Protein sequence |
