AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39313


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39313.t1 MTR_8g010030 86.628 344 46 0 1 344 1 344 0.0 624
MS.gene39313.t1 MTR_8g010000 87.209 344 19 1 1 344 1 319 0.0 609
MS.gene39313.t1 MTR_8g010020 86.628 344 14 1 1 344 1 312 0.0 591
MS.gene39313.t1 MTR_8g009820 82.899 345 56 2 1 344 60 402 0.0 588
MS.gene39313.t1 MTR_8g009980 79.130 345 70 2 1 344 1 344 0.0 570
MS.gene39313.t1 MTR_8g009840 80.826 339 61 3 1 338 1 336 0.0 565
MS.gene39313.t1 MTR_8g009830 79.130 345 68 3 1 344 1 342 0.0 561
MS.gene39313.t1 MTR_4g082970 67.251 342 110 2 4 344 10 350 5.12e-162 457
MS.gene39313.t1 MTR_7g406860 59.420 345 138 2 1 344 3 346 1.04e-143 410
MS.gene39313.t1 MTR_8g007325 80.000 220 41 2 1 219 1 218 2.63e-126 361
MS.gene39313.t1 MTR_0011s0280 45.376 346 184 2 3 344 2 346 2.22e-110 325
MS.gene39313.t1 MTR_2g088190 40.580 345 196 5 4 341 5 347 4.47e-83 256
MS.gene39313.t1 MTR_2g088220 40.816 343 198 4 4 341 6 348 8.75e-78 242
MS.gene39313.t1 MTR_2g088200 38.506 348 200 6 4 341 5 348 1.05e-71 227
MS.gene39313.t1 MTR_5g095030 57.812 128 54 0 215 342 9 136 2.61e-49 162
MS.gene39313.t1 MTR_4g086410 33.333 243 147 6 106 341 388 622 1.62e-26 110
MS.gene39313.t1 MTR_4g086400 35.407 209 127 5 139 341 276 482 1.68e-26 110
MS.gene39313.t1 MTR_4g086400 35.407 209 127 5 139 341 416 622 2.38e-26 110
MS.gene39313.t1 MTR_5g095020 50.877 57 27 1 29 85 6 61 4.30e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39313.t1 AT5G16970 72.222 342 91 3 6 344 5 345 0.0 514
MS.gene39313.t1 AT5G16990 72.727 341 90 3 6 344 4 343 0.0 510
MS.gene39313.t1 AT5G17000 71.930 342 92 3 6 344 5 345 0.0 509
MS.gene39313.t1 AT3G03080 71.098 346 95 3 2 344 7 350 1.32e-179 501
MS.gene39313.t1 AT1G26320 70.640 344 97 3 4 344 9 351 1.66e-176 493
MS.gene39313.t1 AT1G26320 69.477 344 96 4 4 344 9 346 3.40e-172 482
MS.gene39313.t1 AT5G37980 66.762 349 109 4 1 344 7 353 3.94e-171 480
MS.gene39313.t1 AT5G37940 66.472 343 110 3 6 344 12 353 4.40e-169 474
MS.gene39313.t1 AT5G16960 66.377 345 112 3 1 342 1 344 1.57e-168 473
MS.gene39313.t1 AT5G16960 66.377 345 112 3 1 342 1 344 1.57e-168 473
MS.gene39313.t1 AT5G38000 64.368 348 117 4 1 343 7 352 1.18e-164 463
MS.gene39313.t1 AT5G38000 63.265 343 116 5 1 335 7 347 3.79e-158 447
MS.gene39313.t1 AT3G59845 63.953 344 117 5 4 342 5 346 1.15e-152 433
MS.gene39313.t1 AT5G38000 61.516 343 106 5 6 343 12 333 4.94e-149 423
MS.gene39313.t1 AT5G16980 59.884 344 99 4 1 344 1 305 3.02e-141 402
MS.gene39313.t1 AT1G65560 58.213 347 136 6 4 344 7 350 3.04e-136 391
MS.gene39313.t1 AT5G16980 77.826 230 51 0 115 344 10 239 7.85e-131 373
MS.gene39313.t1 AT5G16980 77.826 230 51 0 115 344 10 239 7.85e-131 373
MS.gene39313.t1 AT3G59845 70.204 245 71 2 99 342 1 244 9.88e-120 345
MS.gene39313.t1 AT1G65560 59.926 272 103 3 78 344 4 274 3.62e-112 327
MS.gene39313.t1 AT5G17000 70.507 217 60 3 6 219 5 220 2.34e-108 317
MS.gene39313.t1 AT1G49670 35.407 209 127 5 139 341 412 618 8.05e-26 108
MS.gene39313.t1 AT1G49670 35.500 200 121 5 148 341 444 641 1.46e-24 105
MS.gene39313.t1 AT5G37960 53.333 75 35 0 265 339 27 101 1.70e-18 80.5

Find 77 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTCTTCTTTGTAGTTAA+TGG 0.122574 8.2:-81127245 None:intergenic
GATCTGTTGAAGAATAAATT+TGG 0.232879 8.2:+81127211 MS.gene39313:CDS
GCTAAATTTGTTACACCTTC+AGG 0.250338 8.2:-81127548 None:intergenic
AACCGTGTAATTTAGCAAAT+TGG 0.254826 8.2:-81126757 None:intergenic
CGTGGATTGATAGATGCTTT+TGG 0.268838 8.2:-81125221 None:intergenic
CCAGGAATGACTGCTTATTC+TGG 0.269026 8.2:+81126653 MS.gene39313:CDS
TCCTACTATACCGGAATTCT+TGG 0.285172 8.2:+81126067 MS.gene39313:CDS
AAGTAAACGTCAATGCCTTC+TGG 0.294778 8.2:-81127422 None:intergenic
GTCTATAAAGTTCTGGAATC+TGG 0.319610 8.2:+81125929 MS.gene39313:CDS
AATATGCCAACCAAGGCTTC+AGG 0.325576 8.2:-81127722 None:intergenic
TTTAACCAAAACAACATCAT+TGG 0.334344 8.2:-81125150 None:intergenic
ACAACATCATTGGAACCTTC+TGG 0.339886 8.2:-81125140 None:intergenic
ATGTTGAGGTCTGATTCTTT+AGG 0.350907 8.2:-81125089 None:intergenic
TTGTAACTGCAGCCGATAAC+TGG 0.355043 8.2:+81125899 MS.gene39313:intron
AGGTTCCAATGATGTTGTTT+TGG 0.355569 8.2:+81125145 MS.gene39313:CDS
ATCTGGACGCAAAGATTATA+AGG 0.360102 8.2:+81125946 MS.gene39313:CDS
TCATCTATACGGCAAATTCT+TGG 0.362488 8.2:+81127625 MS.gene39313:CDS
CTTCTGAAACATTATGTGTC+TGG 0.371901 8.2:+81125062 MS.gene39313:CDS
TTATGGTGTCTATAAAGTTC+TGG 0.377426 8.2:+81125922 MS.gene39313:CDS
AAAACATTCTCTCCTTTCTT+GGG 0.385342 8.2:-81126695 None:intergenic
TAGACACCATAACCAGTTAT+CGG 0.385609 8.2:-81125911 None:intergenic
CCAGAATAAGCAGTCATTCC+TGG 0.390460 8.2:-81126653 None:intergenic
GGTGCAGTTGGTCAACTTGT+TGG 0.395943 8.2:+81126734 MS.gene39313:CDS
TAGCACATATCATATATAAT+CGG 0.397092 8.2:+81127567 MS.gene39313:CDS
GTTGATTACTATCATCTATA+CGG 0.398365 8.2:+81127614 MS.gene39313:CDS
TATTCTGGTTTCTTTGAAGT+AGG 0.414955 8.2:+81126668 MS.gene39313:CDS
TGAATACATACCAAGAATTC+CGG 0.416656 8.2:-81126077 None:intergenic
GCCTTGGTTGGCATATTTAG+TGG 0.427792 8.2:+81127728 MS.gene39313:CDS
AGAAGGGAAGGTTGTGTATG+TGG 0.430397 8.2:+81127670 MS.gene39313:CDS
TGCTATGTTGTTGGAAGCGC+TGG 0.439478 8.2:+81126779 MS.gene39313:CDS
AGCCATAAACTTACAGATTG+AGG 0.442715 8.2:-81125254 None:intergenic
CTGCAGCCGATAACTGGTTA+TGG 0.447508 8.2:+81125905 MS.gene39313:intron
ATATGCCAACCAAGGCTTCA+GGG 0.469173 8.2:-81127721 None:intergenic
CTCATAAGAGTCCTCATGTA+AGG 0.474115 8.2:-81125194 None:intergenic
GTTCCTCTTTCCTACTATAC+CGG 0.475688 8.2:+81126058 MS.gene39313:CDS
TGAGAAAGGCCCTGAAGCCT+TGG 0.477909 8.2:+81127712 MS.gene39313:CDS
ACCTCAATGCAGCATTGAAA+AGG 0.490541 8.2:+81127269 MS.gene39313:CDS
TTACACGGTTGCTATGTTGT+TGG 0.490815 8.2:+81126770 MS.gene39313:CDS
ACCAAGAATTCCGGTATAGT+AGG 0.493636 8.2:-81126068 None:intergenic
TCAGCTGCTTCAGGTGCAGT+TGG 0.494200 8.2:+81126722 MS.gene39313:CDS
TTGAAATGTATGTGTGCTGC+AGG 0.501684 8.2:-81126019 None:intergenic
TCTTTGAGCGCAGGTATGCC+AGG 0.502255 8.2:+81126635 MS.gene39313:intron
ACCTTCCCTTCTCTGATATG+AGG 0.504227 8.2:-81127659 None:intergenic
TAAGGAAGGTGATATAGTGT+GGG 0.522542 8.2:+81125964 MS.gene39313:CDS
TAGTCTCATGTTCAAGAGTA+CGG 0.523048 8.2:-81127474 None:intergenic
TCCCTTCTCTGATATGAGGC+AGG 0.531966 8.2:-81127655 None:intergenic
ATAAGGAAGGTGATATAGTG+TGG 0.533080 8.2:+81125963 MS.gene39313:CDS
TTCTGGAATCTTAAGAGTAA+TGG 0.534462 8.2:-81125123 None:intergenic
GAAGTAGGCTCTCCCAAGAA+AGG 0.539338 8.2:+81126683 MS.gene39313:CDS
ATAGCTGAGGGTCTTGAGAA+AGG 0.540813 8.2:+81127698 MS.gene39313:CDS
CTCTTGAACATGAGACTACA+TGG 0.547982 8.2:+81127479 MS.gene39313:CDS
ACTTACAGATTGAGGAACAT+AGG 0.548541 8.2:-81125246 None:intergenic
TATAATCGGATTCGTTTGCA+AGG 0.553002 8.2:+81127581 MS.gene39313:CDS
GTTTACTTTGAGAACGTTGG+AGG 0.568105 8.2:+81127437 MS.gene39313:CDS
GCCTCATATCAGAGAAGGGA+AGG 0.568385 8.2:+81127658 MS.gene39313:CDS
ATTACTCTTAAGATTCCAGA+AGG 0.569583 8.2:+81125125 MS.gene39313:CDS
AAAGGCCCTGAAGCCTTGGT+TGG 0.572741 8.2:+81127716 MS.gene39313:CDS
ATTCCGGTATAGTAGGAAAG+AGG 0.577102 8.2:-81126061 None:intergenic
ACCACTAAATATGCCAACCA+AGG 0.577357 8.2:-81127729 None:intergenic
GTCCTGCCTCATATCAGAGA+AGG 0.579424 8.2:+81127653 MS.gene39313:CDS
GGACGCAAAGATTATAAGGA+AGG 0.583508 8.2:+81125950 MS.gene39313:CDS
GACGTTTACTTTGAGAACGT+TGG 0.592728 8.2:+81127434 MS.gene39313:CDS
GGCCAATTTGCTAAATTACA+CGG 0.603555 8.2:+81126755 MS.gene39313:CDS
AAGGAAGGTGATATAGTGTG+GGG 0.603651 8.2:+81125965 MS.gene39313:CDS
TCCTGCCTCATATCAGAGAA+GGG 0.611678 8.2:+81127654 MS.gene39313:CDS
TAAATCAGGCACTTTCCAGA+AGG 0.621084 8.2:+81127407 MS.gene39313:intron
TGGTACTGTCAACAATGTTG+AGG 0.627893 8.2:-81125103 None:intergenic
TACAATCTTACTCAACCTGA+AGG 0.650544 8.2:+81127533 MS.gene39313:CDS
AGGAAGGTGATATAGTGTGG+GGG 0.659217 8.2:+81125966 MS.gene39313:CDS
TGTCTTGTGATCCTTACATG+AGG 0.664048 8.2:+81125183 MS.gene39313:CDS
CATGGTCGCATACCTGTGTG+TGG 0.677659 8.2:+81127497 MS.gene39313:CDS
AAGCGCTGGAAGTAAAGAGA+AGG 0.678662 8.2:+81126793 MS.gene39313:CDS
TGTGAGATCATTCCACACAC+AGG 0.692179 8.2:-81127509 None:intergenic
TGAAATGTATGTGTGCTGCA+GGG 0.693775 8.2:-81126018 None:intergenic
GATTGAGGAACATAGGCACG+TGG 0.744035 8.2:-81125239 None:intergenic
GTATGTGGAAGACATAGCTG+AGG 0.744288 8.2:+81127685 MS.gene39313:CDS
TATGTGGAAGACATAGCTGA+GGG 0.752621 8.2:+81127686 MS.gene39313:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATATAATTATTATTTT+TGG + chr8.2:81125647-81125666 MS.gene39313:intron 0.0%
!!! TGAAATTTTGTAATAAAATT+AGG - chr8.2:81127035-81127054 None:intergenic 10.0%
!! AACCAAATATTAATGAATAA+AGG - chr8.2:81126314-81126333 None:intergenic 15.0%
!! ATATAAAAAACTCTACTTTA+AGG - chr8.2:81125310-81125329 None:intergenic 15.0%
!! ATCCTTTATTCATTAATATT+TGG + chr8.2:81126309-81126328 MS.gene39313:intron 15.0%
!! TAAATGAAAAGAAACAAAAA+TGG - chr8.2:81127139-81127158 None:intergenic 15.0%
!! TTATTACAAAATTTCAATTC+TGG + chr8.2:81127039-81127058 MS.gene39313:intron 15.0%
!! TTTATTCATTAATATTTGGT+TGG + chr8.2:81126313-81126332 MS.gene39313:intron 15.0%
!!! AGAGTTTTTTATATGTAAAT+TGG + chr8.2:81125316-81125335 MS.gene39313:intron 15.0%
!!! TAATCTCAACAAAATTTTAT+AGG - chr8.2:81125683-81125702 None:intergenic 15.0%
!! AAAAACACAATATGTCAAAA+AGG - chr8.2:81126616-81126635 None:intergenic 20.0%
!! AAATGGAAAACTATTAACAT+AGG - chr8.2:81126251-81126270 None:intergenic 20.0%
!! AATTTGACAAATACTGAAAA+GGG - chr8.2:81125284-81125303 None:intergenic 20.0%
!! ATATTTAGTGGTAAAAATGT+TGG + chr8.2:81127740-81127759 MS.gene39313:CDS 20.0%
!! CAAAAGACATATTTAAGTAA+AGG - chr8.2:81127181-81127200 None:intergenic 20.0%
!! TAATTTGACAAATACTGAAA+AGG - chr8.2:81125285-81125304 None:intergenic 20.0%
!! TAGCACATATCATATATAAT+CGG + chr8.2:81127567-81127586 MS.gene39313:CDS 20.0%
!!! TATTTTTGTTGAGAATTTGA+AGG + chr8.2:81125703-81125722 MS.gene39313:intron 20.0%
!!! TCTTAGCAAATTATTCTTTT+TGG + chr8.2:81125405-81125424 MS.gene39313:intron 20.0%
!!! TTTCACTTTATGTTGATTTA+TGG + chr8.2:81126104-81126123 MS.gene39313:intron 20.0%
! AAGTACTTTCGTAATATAAC+TGG - chr8.2:81126986-81127005 None:intergenic 25.0%
! ATCAGTTCCAAATAACTATA+AGG - chr8.2:81126376-81126395 None:intergenic 25.0%
! CATTGATAAAGAGAAGAAAA+TGG - chr8.2:81126268-81126287 None:intergenic 25.0%
! GATATCAATTTGTGTAAATC+AGG + chr8.2:81127393-81127412 MS.gene39313:intron 25.0%
! GATCTGTTGAAGAATAAATT+TGG + chr8.2:81127211-81127230 MS.gene39313:CDS 25.0%
! GTTGATTACTATCATCTATA+CGG + chr8.2:81127614-81127633 MS.gene39313:CDS 25.0%
! TTCAGACTTTAATTATCTCT+TGG - chr8.2:81125498-81125517 None:intergenic 25.0%
! TTTAACCAAAACAACATCAT+TGG - chr8.2:81125153-81125172 None:intergenic 25.0%
! TTTCAGTTTCATTTGAAAGT+CGG + chr8.2:81125806-81125825 MS.gene39313:intron 25.0%
!! AAATTGGTCTCTTCATTATA+TGG + chr8.2:81125332-81125351 MS.gene39313:intron 25.0%
!! AATTGGTCTCTTCATTATAT+GGG + chr8.2:81125333-81125352 MS.gene39313:intron 25.0%
!! AATTTCAATTCTGGAAGAAA+TGG + chr8.2:81127048-81127067 MS.gene39313:intron 25.0%
!! TGGGGATAAAGAAATATTTT+TGG + chr8.2:81125585-81125604 MS.gene39313:intron 25.0%
!! TTCTCTGTATAATCTTTTCT+CGG + chr8.2:81126430-81126449 MS.gene39313:intron 25.0%
!!! TAATTTGTTGTTTTAACCCT+CGG + chr8.2:81125432-81125451 MS.gene39313:intron 25.0%
AAAAACATTCTCTCCTTTCT+TGG - chr8.2:81126699-81126718 None:intergenic 30.0%
AAAACATTCTCTCCTTTCTT+GGG - chr8.2:81126698-81126717 None:intergenic 30.0%
AACCGTGTAATTTAGCAAAT+TGG - chr8.2:81126760-81126779 None:intergenic 30.0%
AAGAAACAAAAATGGATCTC+AGG - chr8.2:81127131-81127150 None:intergenic 30.0%
AATTATTCACCAAAGTCATC+AGG - chr8.2:81125557-81125576 None:intergenic 30.0%
AGAAACAAAAATGGATCTCA+GGG - chr8.2:81127130-81127149 None:intergenic 30.0%
AGAAGATTCATCATTTATGC+AGG - chr8.2:81126848-81126867 None:intergenic 30.0%
ATAACACAAACTACACATCA+AGG - chr8.2:81125781-81125800 None:intergenic 30.0%
ATTACTCTTAAGATTCCAGA+AGG + chr8.2:81125125-81125144 MS.gene39313:CDS 30.0%
GTTCTAGTCAGATACAAATT+CGG + chr8.2:81125526-81125545 MS.gene39313:intron 30.0%
TAACACAAACTACACATCAA+GGG - chr8.2:81125780-81125799 None:intergenic 30.0%
TAGAACATAAAACTGCACAT+AGG - chr8.2:81126467-81126486 None:intergenic 30.0%
TGAATACATACCAAGAATTC+CGG - chr8.2:81126080-81126099 None:intergenic 30.0%
TGTCTTAGTAATTCGCAATT+CGG + chr8.2:81125469-81125488 MS.gene39313:intron 30.0%
TTACACAAATTGATATCCAC+CGG - chr8.2:81127390-81127409 None:intergenic 30.0%
TTATGGTGTCTATAAAGTTC+TGG + chr8.2:81125922-81125941 MS.gene39313:CDS 30.0%
TTCAGTTTCATTTGAAAGTC+GGG + chr8.2:81125807-81125826 MS.gene39313:intron 30.0%
TTCATTAATATTTGGTTGGC+TGG + chr8.2:81126317-81126336 MS.gene39313:intron 30.0%
TTCCTCAATCTGTAAGTTTA+TGG + chr8.2:81125252-81125271 MS.gene39313:intron 30.0%
TTGCTCTTCTTTGTAGTTAA+TGG - chr8.2:81127248-81127267 None:intergenic 30.0%
! AAACCAGCCTTATAGTTATT+TGG + chr8.2:81126366-81126385 MS.gene39313:intron 30.0%
! AAGGAAGATAGTAATTTTGC+TGG - chr8.2:81127162-81127181 None:intergenic 30.0%
! GGTGAATAATTTGTGTCTAT+GGG + chr8.2:81125566-81125585 MS.gene39313:intron 30.0%
! GTGAATAATTTGTGTCTATG+GGG + chr8.2:81125567-81125586 MS.gene39313:intron 30.0%
! TAAATATGTCTTTTGCAACC+AGG + chr8.2:81127186-81127205 MS.gene39313:intron 30.0%
! TGATGTGTAGTTTGTGTTAT+TGG + chr8.2:81125781-81125800 MS.gene39313:intron 30.0%
! TGGTGAATAATTTGTGTCTA+TGG + chr8.2:81125565-81125584 MS.gene39313:intron 30.0%
!! CTATAAGGCTGGTTTAATAT+TGG - chr8.2:81126361-81126380 None:intergenic 30.0%
!! TATTCTGGTTTCTTTGAAGT+AGG + chr8.2:81126668-81126687 MS.gene39313:CDS 30.0%
!! TGGGTCAATTTGTTATTAGT+AGG + chr8.2:81125352-81125371 MS.gene39313:intron 30.0%
!! TTCTGGAATCTTAAGAGTAA+TGG - chr8.2:81125126-81125145 None:intergenic 30.0%
!!! AATTTGTTGTTTTAACCCTC+GGG + chr8.2:81125433-81125452 MS.gene39313:intron 30.0%
ACTTACAGATTGAGGAACAT+AGG - chr8.2:81125249-81125268 None:intergenic 35.0%
AGCCATAAACTTACAGATTG+AGG - chr8.2:81125257-81125276 None:intergenic 35.0%
ATAAGGAAGGTGATATAGTG+TGG + chr8.2:81125963-81125982 MS.gene39313:CDS 35.0%
ATCTGGACGCAAAGATTATA+AGG + chr8.2:81125946-81125965 MS.gene39313:CDS 35.0%
ATGTTGAGGTCTGATTCTTT+AGG - chr8.2:81125092-81125111 None:intergenic 35.0%
GAAACAAAAATGGATCTCAG+GGG - chr8.2:81127129-81127148 None:intergenic 35.0%
GATAGAGTTGTTTGGATATC+TGG + chr8.2:81126216-81126235 MS.gene39313:intron 35.0%
GTTCCAAATAACTATAAGGC+TGG - chr8.2:81126372-81126391 None:intergenic 35.0%
TAAGGAAGGTGATATAGTGT+GGG + chr8.2:81125964-81125983 MS.gene39313:CDS 35.0%
TACAATCTTACTCAACCTGA+AGG + chr8.2:81127533-81127552 MS.gene39313:CDS 35.0%
TAGACACCATAACCAGTTAT+CGG - chr8.2:81125914-81125933 None:intergenic 35.0%
TAGTCTCATGTTCAAGAGTA+CGG - chr8.2:81127477-81127496 None:intergenic 35.0%
TATAATCGGATTCGTTTGCA+AGG + chr8.2:81127581-81127600 MS.gene39313:CDS 35.0%
TCATCTATACGGCAAATTCT+TGG + chr8.2:81127625-81127644 MS.gene39313:CDS 35.0%
TGGATACTATTACTGGGATA+TGG + chr8.2:81125732-81125751 MS.gene39313:intron 35.0%
TGTTGTGTGATAGAGTTGTT+TGG + chr8.2:81126208-81126227 MS.gene39313:intron 35.0%
! CATGTAGTTTTCTTCCATTC+TGG + chr8.2:81126584-81126603 MS.gene39313:intron 35.0%
! GGTCAGTTTATACAGTTTTG+CGG + chr8.2:81127290-81127309 MS.gene39313:intron 35.0%
! GTCAGTTTATACAGTTTTGC+GGG + chr8.2:81127291-81127310 MS.gene39313:intron 35.0%
!! AAGTGCTGGATACTATTACT+GGG + chr8.2:81125726-81125745 MS.gene39313:intron 35.0%
!! AGGTTCCAATGATGTTGTTT+TGG + chr8.2:81125145-81125164 MS.gene39313:CDS 35.0%
!! CTTCTGAAACATTATGTGTC+TGG + chr8.2:81125062-81125081 MS.gene39313:CDS 35.0%
!! GCTAAATTTGTTACACCTTC+AGG - chr8.2:81127551-81127570 None:intergenic 35.0%
!! GGCCAATTTGCTAAATTACA+CGG + chr8.2:81126755-81126774 MS.gene39313:CDS 35.0%
!! GTCTATAAAGTTCTGGAATC+TGG + chr8.2:81125929-81125948 MS.gene39313:CDS 35.0%
!! GTGGATTGATAGATGCTTTT+GGG - chr8.2:81125223-81125242 None:intergenic 35.0%
AAGGAAGGTGATATAGTGTG+GGG + chr8.2:81125965-81125984 MS.gene39313:CDS 40.0%
AAGTAAACGTCAATGCCTTC+TGG - chr8.2:81127425-81127444 None:intergenic 40.0%
ACAACATCATTGGAACCTTC+TGG - chr8.2:81125143-81125162 None:intergenic 40.0%
ACCAAGAATTCCGGTATAGT+AGG - chr8.2:81126071-81126090 None:intergenic 40.0%
ACCACTAAATATGCCAACCA+AGG - chr8.2:81127732-81127751 None:intergenic 40.0%
ATTCCGGTATAGTAGGAAAG+AGG - chr8.2:81126064-81126083 None:intergenic 40.0%
CCCAAACATTAAGATTAGCG+CGG - chr8.2:81127091-81127110 None:intergenic 40.0%
CCGCGCTAATCTTAATGTTT+GGG + chr8.2:81127088-81127107 MS.gene39313:intron 40.0%
CTCATAAGAGTCCTCATGTA+AGG - chr8.2:81125197-81125216 None:intergenic 40.0%
CTCTTGAACATGAGACTACA+TGG + chr8.2:81127479-81127498 MS.gene39313:CDS 40.0%
GCTACACAGTTCAAAACAGT+AGG - chr8.2:81126883-81126902 None:intergenic 40.0%
GGACGCAAAGATTATAAGGA+AGG + chr8.2:81125950-81125969 MS.gene39313:CDS 40.0%
GTTCCTCTTTCCTACTATAC+CGG + chr8.2:81126058-81126077 MS.gene39313:CDS 40.0%
TAAATCAGGCACTTTCCAGA+AGG + chr8.2:81127407-81127426 MS.gene39313:intron 40.0%
TATGTGGAAGACATAGCTGA+GGG + chr8.2:81127686-81127705 MS.gene39313:CDS 40.0%
TATTCTTCAACAGATCCACC+TGG - chr8.2:81127207-81127226 None:intergenic 40.0%
TCCTACTATACCGGAATTCT+TGG + chr8.2:81126067-81126086 MS.gene39313:CDS 40.0%
TGAAATGTATGTGTGCTGCA+GGG - chr8.2:81126021-81126040 None:intergenic 40.0%
TGGTACTGTCAACAATGTTG+AGG - chr8.2:81125106-81125125 None:intergenic 40.0%
TGTCTTGTGATCCTTACATG+AGG + chr8.2:81125183-81125202 MS.gene39313:CDS 40.0%
TGTTTGGATATCTGGCTGTT+TGG + chr8.2:81126224-81126243 MS.gene39313:intron 40.0%
TTACACGGTTGCTATGTTGT+TGG + chr8.2:81126770-81126789 MS.gene39313:CDS 40.0%
TTGAAATGTATGTGTGCTGC+AGG - chr8.2:81126022-81126041 None:intergenic 40.0%
! ACCTCAATGCAGCATTGAAA+AGG + chr8.2:81127269-81127288 MS.gene39313:CDS 40.0%
! ACCTTTTCAATGCTGCATTG+AGG - chr8.2:81127273-81127292 None:intergenic 40.0%
! ATATGTCTTTTGCAACCAGG+TGG + chr8.2:81127189-81127208 MS.gene39313:intron 40.0%
! GACGTTTACTTTGAGAACGT+TGG + chr8.2:81127434-81127453 MS.gene39313:CDS 40.0%
! GCATCTACACTTTTGATCGA+AGG + chr8.2:81126901-81126920 MS.gene39313:intron 40.0%
! GTTTACTTTGAGAACGTTGG+AGG + chr8.2:81127437-81127456 MS.gene39313:CDS 40.0%
! TGAGAATTTGAAGGAAGTGC+TGG + chr8.2:81125712-81125731 MS.gene39313:intron 40.0%
! TTGTGTTTTTCTTTGAGCGC+AGG + chr8.2:81126626-81126645 MS.gene39313:intron 40.0%
!! AATATTTGGTTGGCTGGCTT+TGG + chr8.2:81126323-81126342 MS.gene39313:intron 40.0%
!! CGTGGATTGATAGATGCTTT+TGG - chr8.2:81125224-81125243 None:intergenic 40.0%
!! GAAGTGCTGGATACTATTAC+TGG + chr8.2:81125725-81125744 MS.gene39313:intron 40.0%
!! GTTTTTGTTTCAGCTGCTTC+AGG + chr8.2:81126713-81126732 MS.gene39313:CDS 40.0%
AATATGCCAACCAAGGCTTC+AGG - chr8.2:81127725-81127744 None:intergenic 45.0%
ACACGAGACACTCAACTAAC+CGG + chr8.2:81127368-81127387 MS.gene39313:intron 45.0%
ACCTTCCCTTCTCTGATATG+AGG - chr8.2:81127662-81127681 None:intergenic 45.0%
AGAAGGGAAGGTTGTGTATG+TGG + chr8.2:81127670-81127689 MS.gene39313:CDS 45.0%
AGGAAGGTGATATAGTGTGG+GGG + chr8.2:81125966-81125985 MS.gene39313:CDS 45.0%
AGTGTGGGGGATAACGAATT+GGG + chr8.2:81125979-81125998 MS.gene39313:CDS 45.0%
ATAGCTGAGGGTCTTGAGAA+AGG + chr8.2:81127698-81127717 MS.gene39313:CDS 45.0%
ATATGCCAACCAAGGCTTCA+GGG - chr8.2:81127724-81127743 None:intergenic 45.0%
CCAGAATAAGCAGTCATTCC+TGG - chr8.2:81126656-81126675 None:intergenic 45.0%
CCAGGAATGACTGCTTATTC+TGG + chr8.2:81126653-81126672 MS.gene39313:CDS 45.0%
GCCGCGCTAATCTTAATGTT+TGG + chr8.2:81127087-81127106 MS.gene39313:intron 45.0%
GCCTTGGTTGGCATATTTAG+TGG + chr8.2:81127728-81127747 MS.gene39313:CDS 45.0%
GTATGTGGAAGACATAGCTG+AGG + chr8.2:81127685-81127704 MS.gene39313:CDS 45.0%
TAGTGTGGGGGATAACGAAT+TGG + chr8.2:81125978-81125997 MS.gene39313:CDS 45.0%
TCCTGCCTCATATCAGAGAA+GGG + chr8.2:81127654-81127673 MS.gene39313:CDS 45.0%
TCGGATTCTCCTGATGACTT+TGG + chr8.2:81125545-81125564 MS.gene39313:intron 45.0%
TGCTTGCATGCTAGATGCTT+AGG - chr8.2:81126525-81126544 None:intergenic 45.0%
TGTGAGATCATTCCACACAC+AGG - chr8.2:81127512-81127531 None:intergenic 45.0%
TTACTAAGACACCTTCCTCC+AGG - chr8.2:81125460-81125479 None:intergenic 45.0%
TTGTAACTGCAGCCGATAAC+TGG + chr8.2:81125899-81125918 MS.gene39313:intron 45.0%
! CAAAAAGGCACACACCAGAA+TGG - chr8.2:81126601-81126620 None:intergenic 45.0%
!! AAGCGCTGGAAGTAAAGAGA+AGG + chr8.2:81126793-81126812 MS.gene39313:CDS 45.0%
ATTAGCGCGGCTCTTCAGTT+TGG - chr8.2:81127078-81127097 None:intergenic 50.0%
CTGCAGCCGATAACTGGTTA+TGG + chr8.2:81125905-81125924 MS.gene39313:intron 50.0%
GAAGTAGGCTCTCCCAAGAA+AGG + chr8.2:81126683-81126702 MS.gene39313:CDS 50.0%
GATTGAGGAACATAGGCACG+TGG - chr8.2:81125242-81125261 None:intergenic 50.0%
GCCTCATATCAGAGAAGGGA+AGG + chr8.2:81127658-81127677 MS.gene39313:CDS 50.0%
GGTGCAGTTGGTCAACTTGT+TGG + chr8.2:81126734-81126753 MS.gene39313:CDS 50.0%
GTCCTGCCTCATATCAGAGA+AGG + chr8.2:81127653-81127672 MS.gene39313:CDS 50.0%
TCCCTTCTCTGATATGAGGC+AGG - chr8.2:81127658-81127677 None:intergenic 50.0%
! TGCTATGTTGTTGGAAGCGC+TGG + chr8.2:81126779-81126798 MS.gene39313:CDS 50.0%
!! GTTGGCTGGCTTTGGTTTGA+AGG + chr8.2:81126331-81126350 MS.gene39313:intron 50.0%
!!! TTGTTTTAACCCTCGGGTCC+TGG + chr8.2:81125439-81125458 MS.gene39313:intron 50.0%
AAAGGCCCTGAAGCCTTGGT+TGG + chr8.2:81127716-81127735 MS.gene39313:CDS 55.0%
CATGGTCGCATACCTGTGTG+TGG + chr8.2:81127497-81127516 MS.gene39313:CDS 55.0%
CGAGACACTCAACTAACCGG+TGG + chr8.2:81127371-81127390 MS.gene39313:intron 55.0%
TCAGCTGCTTCAGGTGCAGT+TGG + chr8.2:81126722-81126741 MS.gene39313:CDS 55.0%
TCTTTGAGCGCAGGTATGCC+AGG + chr8.2:81126635-81126654 MS.gene39313:intron 55.0%
TGAGAAAGGCCCTGAAGCCT+TGG + chr8.2:81127712-81127731 MS.gene39313:CDS 55.0%
! TTTTAACCCTCGGGTCCTGG+AGG + chr8.2:81125442-81125461 MS.gene39313:intron 55.0%
AACCCTCGGGTCCTGGAGGA+AGG + chr8.2:81125446-81125465 MS.gene39313:intron 65.0%
ACACCTTCCTCCAGGACCCG+AGG - chr8.2:81125452-81125471 None:intergenic 65.0%
CACCTTCCTCCAGGACCCGA+GGG - chr8.2:81125451-81125470 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 81125035 81127793 81125035 ID=MS.gene39313
chr8.2 mRNA 81125035 81127793 81125035 ID=MS.gene39313.t1;Parent=MS.gene39313
chr8.2 exon 81125035 81125262 81125035 ID=MS.gene39313.t1.exon1;Parent=MS.gene39313.t1
chr8.2 CDS 81125035 81125262 81125035 ID=cds.MS.gene39313.t1;Parent=MS.gene39313.t1
chr8.2 exon 81125911 81126088 81125911 ID=MS.gene39313.t1.exon2;Parent=MS.gene39313.t1
chr8.2 CDS 81125911 81126088 81125911 ID=cds.MS.gene39313.t1;Parent=MS.gene39313.t1
chr8.2 exon 81126648 81126814 81126648 ID=MS.gene39313.t1.exon3;Parent=MS.gene39313.t1
chr8.2 CDS 81126648 81126814 81126648 ID=cds.MS.gene39313.t1;Parent=MS.gene39313.t1
chr8.2 exon 81127208 81127290 81127208 ID=MS.gene39313.t1.exon4;Parent=MS.gene39313.t1
chr8.2 CDS 81127208 81127290 81127208 ID=cds.MS.gene39313.t1;Parent=MS.gene39313.t1
chr8.2 exon 81127415 81127793 81127415 ID=MS.gene39313.t1.exon5;Parent=MS.gene39313.t1
chr8.2 CDS 81127415 81127793 81127415 ID=cds.MS.gene39313.t1;Parent=MS.gene39313.t1
Gene Sequence

>MS.gene39313

ATGGCACAAGTAAAGAACAAACAAGTTCTTCTGAAACATTATGTGTCTGGTTTTCCTAAAGAATCAGACCTCAACATTGTTGACAGTACCATTACTCTTAAGATTCCAGAAGGTTCCAATGATGTTGTTTTGGTTAAAAATCTTTACTTGTCTTGTGATCCTTACATGAGGACTCTTATGAGTGACCCAAAAGCATCTATCAATCCACGTGCCTATGTTCCTCAATCTGTAAGTTTATGGCTGAAACCCTTTTCAGTATTTGTCAAATTATGCCTTAAAGTAGAGTTTTTTATATGTAAATTGGTCTCTTCATTATATGGGTCAATTTGTTATTAGTAGGTTTACAATTTTGATTTTTATATGATTCATTTCTTAGCAAATTATTCTTTTTGGTGACTAATTTGTTGTTTTAACCCTCGGGTCCTGGAGGAAGGTGTCTTAGTAATTCGCAATTCGGCAGCCAAGAGATAATTAAAGTCTGAATAAGAATTGTTCTAGTCAGATACAAATTCGGATTCTCCTGATGACTTTGGTGAATAATTTGTGTCTATGGGGATAAAGAAATATTTTTGGATTAAATTGTATGTTTGTTATGATTATTGTACTTTGTATATTTATATAATTATTATTTTTGGAAAAAATTTGCCTATAAAATTTTGTTGAGATTATATTTTTGTTGAGAATTTGAAGGAAGTGCTGGATACTATTACTGGGATATGGTTATGTGATTTGTGCTTAAAATCCCTTGATGTGTAGTTTGTGTTATTGGTATTTCAGTTTCATTTGAAAGTCGGGAATCAAGATTGAAATTGATCATAGAATAATTGCTGTATTGAAGTTGTATTGTGCAGCTACTGATAATTTTTGTAACTGCAGCCGATAACTGGTTATGGTGTCTATAAAGTTCTGGAATCTGGACGCAAAGATTATAAGGAAGGTGATATAGTGTGGGGGATAACGAATTGGGAAGAATACAGCTTGATCCCTGCAGCACACATACATTTCAAAATTGAGCATACTGATGTTCCTCTTTCCTACTATACCGGAATTCTTGGTATGTATTCAACAATTTCACTTTATGTTGATTTATGGAGAAGAATGCAATCGAGTTATGAGTTTTCATGTGATGAATGAGTCTTTACGTTGTGTTGTTTAGTATTGTTATAGCATGTTTGTTGTGTGATAGAGTTGTTTGGATATCTGGCTGTTTGGTCCTATGTTAATAGTTTTCCATTTTCTTCTCTTTATCAATGAAGATTATGTAGCTGAAATTGATCCTTTATTCATTAATATTTGGTTGGCTGGCTTTGGTTTGAAGGAGATCCAATATTAAACCAGCCTTATAGTTATTTGGAACTGATGATTGCTTAATACACTTGTATATGTTACAGTCACTTCTCTGTATAATCTTTTCTCGGTTTATAGTTTTCCTATGTGCAGTTTTATGTTCTATTTTTTGAGTATACATTATGCTTTTTCAGTATGAACCTAAGCATCTAGCATGCAAGCAATCTTATTGATTTTTTATGTAAAGTTTATTGATGTTATTCATGTAGTTTTCTTCCATTCTGGTGTGTGCCTTTTTGACATATTGTGTTTTTCTTTGAGCGCAGGTATGCCAGGAATGACTGCTTATTCTGGTTTCTTTGAAGTAGGCTCTCCCAAGAAAGGAGAGAATGTTTTTGTTTCAGCTGCTTCAGGTGCAGTTGGTCAACTTGTTGGCCAATTTGCTAAATTACACGGTTGCTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTATTTGTCTTATTACTGTTGTTATATGTGCCTGCATAAATGATGAATCTTCTGCTGTTTTAAGTCCTACTGTTTTGAACTGTGTAGCATCTACACTTTTGATCGAAGGCGTGTTCAGTGTCTTACATTTGTCTTATATACAATATCAACAATCAACGTTTTTGCTCACCAGTTATATTACGAAAGTACTTTAATGTAGCAAAAACACTAGAATTAGCCTAATTTTATTACAAAATTTCAATTCTGGAAGAAATGGTTAACCAAACTGAAGAGCCGCGCTAATCTTAATGTTTGGGTTTTGATTAATGACTCCCCTGAGATCCATTTTTGTTTCTTTTCATTTACCAGCAAAATTACTATCTTCCTTTACTTAAATATGTCTTTTGCAACCAGGTGGATCTGTTGAAGAATAAATTTGGATACGATGAAGCCATTAACTACAAAGAAGAGCAAGACCTCAATGCAGCATTGAAAAGGTCAGTTTATACAGTTTTGCGGGAGAAATTTTAGTTCGATATGTTTGACATAAAAAAATATAGTTACTGCGTTTGTAACACGAGACACTCAACTAACCGGTGGATATCAATTTGTGTAAATCAGGCACTTTCCAGAAGGCATTGACGTTTACTTTGAGAACGTTGGAGGCAAGACACTTGATGCCGTACTCTTGAACATGAGACTACATGGTCGCATACCTGTGTGTGGAATGATCTCACAGTACAATCTTACTCAACCTGAAGGTGTAACAAATTTAGCACATATCATATATAATCGGATTCGTTTGCAAGGTTTTGTTGTAGTTGATTACTATCATCTATACGGCAAATTCTTGGAGTTTGTCCTGCCTCATATCAGAGAAGGGAAGGTTGTGTATGTGGAAGACATAGCTGAGGGTCTTGAGAAAGGCCCTGAAGCCTTGGTTGGCATATTTAGTGGTAAAAATGTTGGCAAACAAGTGCTTGTTGTTGCTCATGAATGA

Protein sequence

>MS.gene39313.t1

MAQVKNKQVLLKHYVSGFPKESDLNIVDSTITLKIPEGSNDVVLVKNLYLSCDPYMRTLMSDPKASINPRAYVPQSPITGYGVYKVLESGRKDYKEGDIVWGITNWEEYSLIPAAHIHFKIEHTDVPLSYYTGILGMPGMTAYSGFFEVGSPKKGENVFVSAASGAVGQLVGQFAKLHGCYVVGSAGSKEKVDLLKNKFGYDEAINYKEEQDLNAALKRHFPEGIDVYFENVGGKTLDAVLLNMRLHGRIPVCGMISQYNLTQPEGVTNLAHIIYNRIRLQGFVVVDYYHLYGKFLEFVLPHIREGKVVYVEDIAEGLEKGPEALVGIFSGKNVGKQVLVVAHE