Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92043.t1 | XP_013459310.1 | 99.3 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 7.50E-149 | 536.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92043.t1 | O48946 | 51.8 | 166 | 74 | 4 | 3 | 167 | 28 | 188 | 9.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92043.t1 | A0A072UVE3 | 99.3 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 5.4e-149 | 536.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92043.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene92043 | 0.825767 | 3.92E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene92043 | 0.834864 | 2.34E-56 | -1.69E-46 |
| MS.gene04991 | MS.gene92043 | -0.885329 | 8.93E-72 | -1.69E-46 |
| MS.gene050105 | MS.gene92043 | 0.803637 | 3.17E-49 | -1.69E-46 |
| MS.gene050527 | MS.gene92043 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene92043 | -0.841653 | 4.17E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene92043 | 0.80014 | 1.66E-48 | -1.69E-46 |
| MS.gene050762 | MS.gene92043 | 0.805166 | 1.52E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene92043 | 0.805577 | 1.25E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene92043 | 0.831124 | 1.99E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene92043 | 0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene92043 | 0.824651 | 7.19E-54 | -1.69E-46 |
| MS.gene052420 | MS.gene92043 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene052641 | MS.gene92043 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene92043 | 0.815662 | 8.24E-52 | -1.69E-46 |
| MS.gene055060 | MS.gene92043 | -0.834838 | 2.38E-56 | -1.69E-46 |
| MS.gene055505 | MS.gene92043 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene92043 | 0.814867 | 1.24E-51 | -1.69E-46 |
| MS.gene055946 | MS.gene92043 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene92043 | 0.833798 | 4.34E-56 | -1.69E-46 |
| MS.gene060084 | MS.gene92043 | 0.825559 | 4.39E-54 | -1.69E-46 |
| MS.gene060869 | MS.gene92043 | 0.808109 | 3.64E-50 | -1.69E-46 |
| MS.gene060940 | MS.gene92043 | 0.82409 | 9.75E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92043.t1 | MTR_3g436010 | 99.329 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 0.0 | 613 |
| MS.gene92043.t1 | MTR_3g436010 | 98.684 | 228 | 3 | 0 | 3 | 230 | 26 | 253 | 4.81e-171 | 474 |
| MS.gene92043.t1 | MTR_3g107520 | 60.843 | 166 | 60 | 3 | 4 | 167 | 30 | 192 | 3.22e-48 | 172 |
| MS.gene92043.t1 | MTR_3g030040 | 31.579 | 228 | 125 | 5 | 4 | 218 | 11 | 220 | 1.43e-29 | 119 |
| MS.gene92043.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 38 | 120 | 1.74e-27 | 112 |
| MS.gene92043.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 34 | 116 | 1.82e-27 | 112 |
| MS.gene92043.t1 | MTR_8g037260 | 33.071 | 254 | 130 | 12 | 4 | 222 | 11 | 259 | 2.50e-27 | 112 |
| MS.gene92043.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 7.00e-27 | 110 |
| MS.gene92043.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 7.71e-27 | 110 |
| MS.gene92043.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 2.78e-25 | 106 |
| MS.gene92043.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 6.41e-25 | 105 |
| MS.gene92043.t1 | MTR_8g092590 | 35.196 | 179 | 96 | 5 | 4 | 167 | 29 | 202 | 4.10e-24 | 102 |
| MS.gene92043.t1 | MTR_8g063270 | 59.155 | 71 | 29 | 0 | 2 | 72 | 25 | 95 | 7.21e-24 | 102 |
| MS.gene92043.t1 | MTR_7g057160 | 50.000 | 132 | 60 | 1 | 170 | 295 | 40 | 171 | 9.57e-24 | 95.5 |
| MS.gene92043.t1 | MTR_2g035780 | 50.000 | 84 | 41 | 1 | 5 | 87 | 28 | 111 | 1.01e-23 | 101 |
| MS.gene92043.t1 | MTR_7g106680 | 30.396 | 227 | 112 | 7 | 2 | 228 | 8 | 188 | 1.95e-21 | 95.1 |
| MS.gene92043.t1 | MTR_3g007770 | 53.731 | 67 | 31 | 0 | 6 | 72 | 31 | 97 | 1.02e-19 | 89.7 |
| MS.gene92043.t1 | MTR_8g086600 | 38.710 | 62 | 38 | 0 | 11 | 72 | 6 | 67 | 9.92e-12 | 65.9 |
| MS.gene92043.t1 | MTR_2g016630 | 43.548 | 62 | 32 | 1 | 14 | 72 | 9 | 70 | 7.48e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92043.t1 | AT5G11260 | 72.519 | 131 | 35 | 1 | 168 | 297 | 33 | 163 | 6.98e-56 | 178 |
| MS.gene92043.t1 | AT5G11260 | 72.174 | 115 | 31 | 1 | 168 | 281 | 33 | 147 | 2.50e-50 | 164 |
| MS.gene92043.t1 | AT4G32410 | 59.639 | 166 | 61 | 4 | 3 | 167 | 28 | 188 | 9.18e-49 | 174 |
| MS.gene92043.t1 | AT2G25540 | 59.091 | 132 | 50 | 2 | 4 | 134 | 23 | 151 | 1.13e-44 | 162 |
| MS.gene92043.t1 | AT3G17609 | 55.372 | 121 | 47 | 3 | 170 | 285 | 23 | 141 | 2.85e-33 | 119 |
| MS.gene92043.t1 | AT3G17609 | 54.867 | 113 | 44 | 3 | 178 | 285 | 2 | 112 | 1.60e-30 | 111 |
| MS.gene92043.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 48 | 127 | 1.31e-28 | 107 |
| MS.gene92043.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 47 | 126 | 1.33e-28 | 107 |
| MS.gene92043.t1 | AT5G05170 | 39.326 | 178 | 88 | 6 | 4 | 164 | 10 | 184 | 9.93e-28 | 113 |
| MS.gene92043.t1 | AT5G17420 | 60.563 | 71 | 28 | 0 | 2 | 72 | 25 | 95 | 1.04e-26 | 110 |
| MS.gene92043.t1 | AT5G09870 | 40.123 | 162 | 88 | 5 | 4 | 164 | 29 | 182 | 6.40e-24 | 102 |
| MS.gene92043.t1 | AT4G39350 | 56.522 | 69 | 30 | 0 | 4 | 72 | 29 | 97 | 8.02e-23 | 99.0 |
| MS.gene92043.t1 | AT5G64740 | 57.971 | 69 | 29 | 0 | 4 | 72 | 29 | 97 | 3.48e-22 | 97.4 |
| MS.gene92043.t1 | AT5G44030 | 42.529 | 87 | 48 | 1 | 8 | 92 | 17 | 103 | 5.60e-20 | 90.9 |
| MS.gene92043.t1 | AT5G44030 | 42.529 | 87 | 48 | 1 | 8 | 92 | 17 | 103 | 8.32e-20 | 90.1 |
| MS.gene92043.t1 | AT2G21770 | 54.545 | 66 | 30 | 0 | 7 | 72 | 32 | 97 | 1.50e-19 | 89.4 |
| MS.gene92043.t1 | AT4G18780 | 33.333 | 111 | 64 | 2 | 13 | 122 | 8 | 109 | 2.36e-13 | 70.9 |
Find 78 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3.2:-36936159 | None:intergenic |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3.2:+36936463 | MS.gene92043:CDS |
| TGCTGGTCCAGAACGTGTTC+AGG | 0.289263 | 3.2:+36938046 | MS.gene92043:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3.2:-36938108 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3.2:-36937251 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3.2:-36939006 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3.2:+36936546 | MS.gene92043:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3.2:+36938281 | MS.gene92043:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3.2:-36937987 | None:intergenic |
| CCAGCACCCTGAACACGTTC+TGG | 0.345136 | 3.2:-36938053 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3.2:+36937190 | MS.gene92043:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3.2:-36938009 | None:intergenic |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3.2:-36936158 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3.2:+36937974 | MS.gene92043:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3.2:-36938104 | None:intergenic |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3.2:-36936304 | None:intergenic |
| CCAGAACGTGTTCAGGGTGC+TGG | 0.423989 | 3.2:+36938053 | MS.gene92043:CDS |
| TTAAGGAATGAGGTCAAGTA+TGG | 0.424236 | 3.2:+36936480 | MS.gene92043:CDS |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3.2:+36937191 | MS.gene92043:CDS |
| CCATCTCACAAATGGACAAC+TGG | 0.446482 | 3.2:+36936593 | MS.gene92043:CDS |
| CAAAATCCCCATCTCACAAA+TGG | 0.448984 | 3.2:+36936585 | MS.gene92043:CDS |
| CAGTTGTCCATTTGTGAGAT+GGG | 0.452668 | 3.2:-36936592 | None:intergenic |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3.2:-36938338 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3.2:+36936155 | MS.gene92043:CDS |
| CCAGTTGTCCATTTGTGAGA+TGG | 0.468711 | 3.2:-36936593 | None:intergenic |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3.2:-36938103 | None:intergenic |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3.2:+36937182 | MS.gene92043:CDS |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3.2:+36937975 | MS.gene92043:CDS |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.496174 | 3.2:+36938268 | MS.gene92043:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3.2:+36938029 | MS.gene92043:CDS |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3.2:+36936515 | MS.gene92043:CDS |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3.2:+36938389 | MS.gene92043:CDS |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3.2:+36936270 | MS.gene92043:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3.2:+36938105 | MS.gene92043:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3.2:+36938114 | MS.gene92043:CDS |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3.2:+36936514 | MS.gene92043:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3.2:+36936188 | MS.gene92043:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3.2:+36938274 | MS.gene92043:CDS |
| GCTGGTCCAGAACGTGTTCA+GGG | 0.533529 | 3.2:+36938047 | MS.gene92043:CDS |
| CGTGTTCAGGGTGCTGGAGA+GGG | 0.536653 | 3.2:+36938059 | MS.gene92043:CDS |
| TCAGATGATCCTCGAGTGAA+AGG | 0.541668 | 3.2:+36936429 | MS.gene92043:intron |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3.2:+36936504 | MS.gene92043:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3.2:-36937240 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3.2:+36938299 | MS.gene92043:CDS |
| AACACTACAGCTAGCAGGAG+AGG | 0.568592 | 3.2:+36938969 | MS.gene92043:CDS |
| ACGTGTTCAGGGTGCTGGAG+AGG | 0.570680 | 3.2:+36938058 | MS.gene92043:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3.2:+36938017 | MS.gene92043:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3.2:+36938011 | MS.gene92043:CDS |
| TGAAGAACACTACAGCTAGC+AGG | 0.574364 | 3.2:+36938964 | MS.gene92043:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3.2:+36936508 | MS.gene92043:CDS |
| TCATCACCTCCTTTCACTCG+AGG | 0.584150 | 3.2:-36936438 | None:intergenic |
| AGTTGTCCATTTGTGAGATG+GGG | 0.584444 | 3.2:-36936591 | None:intergenic |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3.2:+36936486 | MS.gene92043:CDS |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3.2:+36936203 | MS.gene92043:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.598096 | 3.2:+36938269 | MS.gene92043:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3.2:+36936500 | MS.gene92043:CDS |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3.2:+36936176 | MS.gene92043:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3.2:-36936314 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3.2:-36936259 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3.2:+36936470 | MS.gene92043:CDS |
| AGCAGGAGAGGAAGCAACGG+TGG | 0.611550 | 3.2:+36938981 | MS.gene92043:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3.2:-36936222 | None:intergenic |
| GCTAGCAGGAGAGGAAGCAA+CGG | 0.617888 | 3.2:+36938978 | MS.gene92043:CDS |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3.2:+36937242 | MS.gene92043:CDS |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3.2:-36936219 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3.2:-36938021 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3.2:-36936260 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3.2:+36936326 | MS.gene92043:CDS |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3.2:+36937990 | MS.gene92043:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.648990 | 3.2:+36938074 | MS.gene92043:CDS |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3.2:-36936551 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.652705 | 3.2:+36938241 | MS.gene92043:intron |
| GATGATCCTCGAGTGAAAGG+AGG | 0.657821 | 3.2:+36936432 | MS.gene92043:intron |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3.2:-36936255 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3.2:-36937161 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3.2:+36937978 | MS.gene92043:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3.2:-36936244 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3.2:+36937950 | MS.gene92043:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAGTAAAAGTCTTTAT+AGG | + | chr3.2:36937425-36937444 | MS.gene92043:intron | 15.0% |
| !! | ATCATATGTGAAATAATATT+TGG | + | chr3.2:36937077-36937096 | MS.gene92043:intron | 15.0% |
| !! | CTTAATTTAGAAAATGAAAA+AGG | - | chr3.2:36937490-36937509 | None:intergenic | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | + | chr3.2:36936924-36936943 | MS.gene92043:intron | 15.0% |
| !! | TTAACTTATATATTCACAAT+TGG | + | chr3.2:36936684-36936703 | MS.gene92043:intron | 15.0% |
| !!! | ATACTAACTGTATATTTTTA+TGG | + | chr3.2:36937119-36937138 | MS.gene92043:intron | 15.0% |
| !!! | TCATTTGAACTTTTTAAAAT+CGG | + | chr3.2:36936857-36936876 | MS.gene92043:intron | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | + | chr3.2:36938604-36938623 | MS.gene92043:intron | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | - | chr3.2:36937371-36937390 | None:intergenic | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | + | chr3.2:36937881-36937900 | MS.gene92043:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | - | chr3.2:36938787-36938806 | None:intergenic | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | - | chr3.2:36937682-36937701 | None:intergenic | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | + | chr3.2:36937868-36937887 | MS.gene92043:intron | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | + | chr3.2:36938927-36938946 | MS.gene92043:intron | 20.0% |
| !!! | TTATATTGTGAGTATTTTGA+AGG | - | chr3.2:36937411-36937430 | None:intergenic | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | + | chr3.2:36936155-36936174 | MS.gene92043:CDS | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | - | chr3.2:36938189-36938208 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | - | chr3.2:36936735-36936754 | None:intergenic | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | - | chr3.2:36938731-36938750 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | - | chr3.2:36938182-36938201 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | - | chr3.2:36936262-36936281 | None:intergenic | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | + | chr3.2:36938500-36938519 | MS.gene92043:intron | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | - | chr3.2:36936263-36936282 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | - | chr3.2:36938911-36938930 | None:intergenic | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | - | chr3.2:36936161-36936180 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | + | chr3.2:36938797-36938816 | MS.gene92043:intron | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | - | chr3.2:36936162-36936181 | None:intergenic | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+TGG | + | chr3.2:36936631-36936650 | MS.gene92043:intron | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | - | chr3.2:36936673-36936692 | None:intergenic | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | + | chr3.2:36936270-36936289 | MS.gene92043:CDS | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | + | chr3.2:36938798-36938817 | MS.gene92043:intron | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | + | chr3.2:36938799-36938818 | MS.gene92043:intron | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | + | chr3.2:36937798-36937817 | MS.gene92043:intron | 25.0% |
| !!! | AAATGACACTCATTTTGAAA+TGG | - | chr3.2:36938642-36938661 | None:intergenic | 25.0% |
| !!! | AATTTTTGGGGATAAAATGA+TGG | - | chr3.2:36938873-36938892 | None:intergenic | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | - | chr3.2:36937839-36937858 | None:intergenic | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | + | chr3.2:36938916-36938935 | MS.gene92043:intron | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | + | chr3.2:36938212-36938231 | MS.gene92043:intron | 25.0% |
| !!! | TATTTTTATGGTTAGATGTC+TGG | + | chr3.2:36937131-36937150 | MS.gene92043:intron | 25.0% |
| !!! | TTCAAAATGAGTGTCATTTA+AGG | + | chr3.2:36938643-36938662 | MS.gene92043:intron | 25.0% |
| AAACCAACCCTATCAATTAT+TGG | + | chr3.2:36938721-36938740 | MS.gene92043:intron | 30.0% | |
| AAGAACAATAATACCATGAC+AGG | - | chr3.2:36938495-36938514 | None:intergenic | 30.0% | |
| ACTAGATTCAAAAGTCACAA+AGG | + | chr3.2:36936326-36936345 | MS.gene92043:CDS | 30.0% | |
| AGAACAATAATACCATGACA+GGG | - | chr3.2:36938494-36938513 | None:intergenic | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | - | chr3.2:36937907-36937926 | None:intergenic | 30.0% | |
| GACACAGAAAAACAAAATTG+TGG | - | chr3.2:36937453-36937472 | None:intergenic | 30.0% | |
| GATACACACCAATAATTGAT+AGG | - | chr3.2:36938732-36938751 | None:intergenic | 30.0% | |
| GTTCAAAAGTTTACCAAAAC+TGG | - | chr3.2:36937515-36937534 | None:intergenic | 30.0% | |
| TTGGCCTAGATAATTTACTT+GGG | + | chr3.2:36937900-36937919 | MS.gene92043:intron | 30.0% | |
| ! | AATTCACAGGGAGAAATTTT+TGG | - | chr3.2:36938887-36938906 | None:intergenic | 30.0% |
| ! | ACTTTTGAACAAACACTTGT+AGG | + | chr3.2:36937525-36937544 | MS.gene92043:intron | 30.0% |
| ! | ATTCACAGGGAGAAATTTTT+GGG | - | chr3.2:36938886-36938905 | None:intergenic | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | + | chr3.2:36937899-36937918 | MS.gene92043:intron | 30.0% |
| ! | ATTTTGAGCTAAGATGTAGA+AGG | + | chr3.2:36936993-36937012 | MS.gene92043:intron | 30.0% |
| ! | TCTAAATTAAGAGCCAGTTT+TGG | + | chr3.2:36937499-36937518 | MS.gene92043:intron | 30.0% |
| ! | TTTTGAGCTAAGATGTAGAA+GGG | + | chr3.2:36936994-36937013 | MS.gene92043:intron | 30.0% |
| AAAATGGTAATAGGCTACTG+AGG | + | chr3.2:36938241-36938260 | MS.gene92043:intron | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | + | chr3.2:36936463-36936482 | MS.gene92043:CDS | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | - | chr3.2:36936258-36936277 | None:intergenic | 35.0% | |
| ACACCAATAATTGATAGGGT+TGG | - | chr3.2:36938727-36938746 | None:intergenic | 35.0% | |
| ATCCACATTCATCTTGTTCA+TGG | - | chr3.2:36936408-36936427 | None:intergenic | 35.0% | |
| ATGCAAATTTGGCAATTCAC+AGG | - | chr3.2:36938900-36938919 | None:intergenic | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | + | chr3.2:36936188-36936207 | MS.gene92043:CDS | 35.0% | |
| CAACAGGAGTGATACATTAA+AGG | - | chr3.2:36937693-36937712 | None:intergenic | 35.0% | |
| CAATCATAGGAAAAAGGAGT+TGG | - | chr3.2:36938176-36938195 | None:intergenic | 35.0% | |
| CACCGGTAATAATGAGAAAA+TGG | - | chr3.2:36937803-36937822 | None:intergenic | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | + | chr3.2:36936176-36936195 | MS.gene92043:CDS | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | + | chr3.2:36937291-36937310 | MS.gene92043:intron | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | + | chr3.2:36937922-36937941 | MS.gene92043:intron | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | + | chr3.2:36938225-36938244 | MS.gene92043:intron | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | + | chr3.2:36938389-36938408 | MS.gene92043:CDS | 35.0% | |
| TGCAAATTTGGCAATTCACA+GGG | - | chr3.2:36938899-36938918 | None:intergenic | 35.0% | |
| TGCTACACTACAATCATTTC+AGG | - | chr3.2:36937279-36937298 | None:intergenic | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | + | chr3.2:36938232-36938251 | MS.gene92043:intron | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | + | chr3.2:36936500-36936519 | MS.gene92043:CDS | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | + | chr3.2:36936480-36936499 | MS.gene92043:CDS | 35.0% | |
| TTGGGGATAAAATGATGGTT+TGG | - | chr3.2:36938868-36938887 | None:intergenic | 35.0% | |
| TTTAGATAGGTTACATGAGC+TGG | + | chr3.2:36938513-36938532 | MS.gene92043:intron | 35.0% | |
| ! | CAAAGGCATGTTGATGTAAT+TGG | - | chr3.2:36938433-36938452 | None:intergenic | 35.0% |
| ! | CTGAAGTGTTAGTATCACAT+GGG | - | chr3.2:36937727-36937746 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | - | chr3.2:36937728-36937747 | None:intergenic | 35.0% |
| ! | TTCACAGGGAGAAATTTTTG+GGG | - | chr3.2:36938885-36938904 | None:intergenic | 35.0% |
| !! | AAAATGATGGTTTGGTGGAA+GGG | - | chr3.2:36938860-36938879 | None:intergenic | 35.0% |
| !! | GTATTTTGAAGGAACTGGAA+AGG | - | chr3.2:36937400-36937419 | None:intergenic | 35.0% |
| !! | TAAAATGATGGTTTGGTGGA+AGG | - | chr3.2:36938861-36938880 | None:intergenic | 35.0% |
| !! | TAGTGACTTTGGAATAATCC+AGG | + | chr3.2:36937933-36937952 | MS.gene92043:intron | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | - | chr3.2:36937405-36937424 | None:intergenic | 35.0% |
| !! | TTGAATCTAGTCTTGCATTG+TGG | - | chr3.2:36936317-36936336 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr3.2:36938638-36938657 | None:intergenic | 35.0% |
| !!! | TGACACTCATTTTGAAATGG+AGG | - | chr3.2:36938639-36938658 | None:intergenic | 35.0% |
| AAGAAAGCAAACGGCTAAAG+AGG | + | chr3.2:36938114-36938133 | MS.gene92043:CDS | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | - | chr3.2:36937657-36937676 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | - | chr3.2:36937674-36937693 | None:intergenic | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | + | chr3.2:36936486-36936505 | MS.gene92043:CDS | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | - | chr3.2:36936594-36936613 | None:intergenic | 40.0% | |
| ATTATTACCGGTGTCCTGTT+AGG | + | chr3.2:36937810-36937829 | MS.gene92043:intron | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | + | chr3.2:36936585-36936604 | MS.gene92043:CDS | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | + | chr3.2:36937191-36937210 | MS.gene92043:CDS | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | + | chr3.2:36936504-36936523 | MS.gene92043:CDS | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | + | chr3.2:36937182-36937201 | MS.gene92043:CDS | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | - | chr3.2:36936595-36936614 | None:intergenic | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | - | chr3.2:36938167-36938186 | None:intergenic | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | + | chr3.2:36936508-36936527 | MS.gene92043:CDS | 40.0% | |
| TAGCCGTTTGCTTTCTTTGT+CGG | - | chr3.2:36938111-36938130 | None:intergenic | 40.0% | |
| TATGTTGATCCAAAGCAACC+AGG | + | chr3.2:36937242-36937261 | MS.gene92043:CDS | 40.0% | |
| TCATGGCAAAATCTGATGAG+AGG | - | chr3.2:36936391-36936410 | None:intergenic | 40.0% | |
| TCTTGCATTGTGGACATGAT+TGG | - | chr3.2:36936307-36936326 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | - | chr3.2:36937164-36937183 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | + | chr3.2:36936403-36936422 | MS.gene92043:intron | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | + | chr3.2:36936470-36936489 | MS.gene92043:CDS | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | + | chr3.2:36938299-36938318 | MS.gene92043:CDS | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | - | chr3.2:36938450-36938469 | None:intergenic | 40.0% |
| ! | ACATTTTCGGATTGACCCAA+AGG | - | chr3.2:36937209-36937228 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAAGCATGTC+CGG | + | chr3.2:36937741-36937760 | MS.gene92043:intron | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | - | chr3.2:36938341-36938360 | None:intergenic | 40.0% |
| ! | GGGATAAAATGATGGTTTGG+TGG | - | chr3.2:36938865-36938884 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | - | chr3.2:36937243-36937262 | None:intergenic | 40.0% |
| !! | AAATGATGGTTTGGTGGAAG+GGG | - | chr3.2:36938859-36938878 | None:intergenic | 40.0% |
| !! | AAGGTTAGCTTGTGATCACA+TGG | + | chr3.2:36936345-36936364 | MS.gene92043:intron | 40.0% |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | + | chr3.2:36937975-36937994 | MS.gene92043:CDS | 40.0% |
| AACTCTGTACCTGGTTGCTT+TGG | - | chr3.2:36937254-36937273 | None:intergenic | 45.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | + | chr3.2:36936203-36936222 | MS.gene92043:CDS | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | - | chr3.2:36938841-36938860 | None:intergenic | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | + | chr3.2:36938269-36938288 | MS.gene92043:CDS | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | - | chr3.2:36937709-36937728 | None:intergenic | 45.0% | |
| CAGCCGACAAAGAAAGCAAA+CGG | + | chr3.2:36938105-36938124 | MS.gene92043:CDS | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | - | chr3.2:36936554-36936573 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | - | chr3.2:36937827-36937846 | None:intergenic | 45.0% | |
| CCAGTTGTCCATTTGTGAGA+TGG | - | chr3.2:36936596-36936615 | None:intergenic | 45.0% | |
| CCATCTCACAAATGGACAAC+TGG | + | chr3.2:36936593-36936612 | MS.gene92043:CDS | 45.0% | |
| CTATCGGTCAAGAGGATTAC+TGG | - | chr3.2:36937666-36937685 | None:intergenic | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | + | chr3.2:36937190-36937209 | MS.gene92043:CDS | 45.0% | |
| GGTGGAAGAGTAAAGTAAGG+AGG | - | chr3.2:36938838-36938857 | None:intergenic | 45.0% | |
| TCAGATGATCCTCGAGTGAA+AGG | + | chr3.2:36936429-36936448 | MS.gene92043:intron | 45.0% | |
| TGAAGAACACTACAGCTAGC+AGG | + | chr3.2:36938964-36938983 | MS.gene92043:CDS | 45.0% | |
| TTTACGAGAGGCTGATGTTC+CGG | - | chr3.2:36938012-36938031 | None:intergenic | 45.0% | |
| TTTCAGGCTAACTCTGTACC+TGG | - | chr3.2:36937263-36937282 | None:intergenic | 45.0% | |
| ! | GGCACGTGAGTGAACATTTT+CGG | - | chr3.2:36937222-36937241 | None:intergenic | 45.0% |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | - | chr3.2:36938106-36938125 | None:intergenic | 45.0% |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | + | chr3.2:36938479-36938498 | MS.gene92043:intron | 45.0% |
| !! | GATCAGAAGAGTGCCAGATA+TGG | + | chr3.2:36937974-36937993 | MS.gene92043:CDS | 45.0% |
| !! | GCGAGTTTCTGAAATAGTCG+AGG | - | chr3.2:36937621-36937640 | None:intergenic | 45.0% |
| AAAGTGGGAAGGAACACTCG+TGG | - | chr3.2:36936247-36936266 | None:intergenic | 50.0% | |
| AACACTACAGCTAGCAGGAG+AGG | + | chr3.2:36938969-36938988 | MS.gene92043:CDS | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | + | chr3.2:36936514-36936533 | MS.gene92043:CDS | 50.0% | |
| ATGGACACCTAACAGGACAC+CGG | - | chr3.2:36937820-36937839 | None:intergenic | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | - | chr3.2:36938107-36938126 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | + | chr3.2:36938268-36938287 | MS.gene92043:CDS | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | + | chr3.2:36937990-36938009 | MS.gene92043:CDS | 50.0% | |
| GATGATCCTCGAGTGAAAGG+AGG | + | chr3.2:36936432-36936451 | MS.gene92043:intron | 50.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | - | chr3.2:36936225-36936244 | None:intergenic | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | + | chr3.2:36938281-36938300 | MS.gene92043:CDS | 50.0% | |
| GCAGATTCACCTCCCATATC+TGG | - | chr3.2:36937990-36938009 | None:intergenic | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | + | chr3.2:36936546-36936565 | MS.gene92043:CDS | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | + | chr3.2:36938011-36938030 | MS.gene92043:CDS | 50.0% | |
| GGAGAGGGTCAAAAGAAGAG+AGG | + | chr3.2:36938074-36938093 | MS.gene92043:CDS | 50.0% | |
| TCATCACCTCCTTTCACTCG+AGG | - | chr3.2:36936441-36936460 | None:intergenic | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | - | chr3.2:36938024-36938043 | None:intergenic | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | + | chr3.2:36936515-36936534 | MS.gene92043:CDS | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | - | chr3.2:36937763-36937782 | None:intergenic | 50.0% |
| !! | AAAGGCACTGGTTCAACTGC+TGG | + | chr3.2:36938029-36938048 | MS.gene92043:CDS | 50.0% |
| !! | AGAAGAGTGCCAGATATGGG+AGG | + | chr3.2:36937978-36937997 | MS.gene92043:CDS | 50.0% |
| AGCAACAAAGACTTCGCCGG+TGG | - | chr3.2:36936222-36936241 | None:intergenic | 55.0% | |
| GCTAGCAGGAGAGGAAGCAA+CGG | + | chr3.2:36938978-36938997 | MS.gene92043:CDS | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | + | chr3.2:36938047-36938066 | MS.gene92043:CDS | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | + | chr3.2:36937950-36937969 | MS.gene92043:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | - | chr3.2:36937954-36937973 | None:intergenic | 55.0% | |
| TGCTGGTCCAGAACGTGTTC+AGG | + | chr3.2:36938046-36938065 | MS.gene92043:CDS | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | + | chr3.2:36938017-36938036 | MS.gene92043:CDS | 55.0% |
| !! | TGATGGTTTGGTGGAAGGGG+TGG | - | chr3.2:36938856-36938875 | None:intergenic | 55.0% |
| AGCAGGAGAGGAAGCAACGG+TGG | + | chr3.2:36938981-36939000 | MS.gene92043:CDS | 60.0% | |
| CAGCTCAGCAAGCAAGGGAG+AGG | + | chr3.2:36938274-36938293 | MS.gene92043:CDS | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | + | chr3.2:36938053-36938072 | MS.gene92043:CDS | 60.0% | |
| CCAGCACCCTGAACACGTTC+TGG | - | chr3.2:36938056-36938075 | None:intergenic | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | + | chr3.2:36938058-36938077 | MS.gene92043:CDS | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | + | chr3.2:36938059-36938078 | MS.gene92043:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 36936146 | 36939022 | 36936146 | ID=MS.gene92043 |
| chr3.2 | mRNA | 36936146 | 36939022 | 36936146 | ID=MS.gene92043.t1;Parent=MS.gene92043 |
| chr3.2 | exon | 36936146 | 36936347 | 36936146 | ID=MS.gene92043.t1.exon1;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36936146 | 36936347 | 36936146 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| chr3.2 | exon | 36936433 | 36936614 | 36936433 | ID=MS.gene92043.t1.exon2;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36936433 | 36936614 | 36936433 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| chr3.2 | exon | 36937146 | 36937263 | 36937146 | ID=MS.gene92043.t1.exon3;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36937146 | 36937263 | 36937146 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| chr3.2 | exon | 36937955 | 36938135 | 36937955 | ID=MS.gene92043.t1.exon4;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36937955 | 36938135 | 36937955 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| chr3.2 | exon | 36938254 | 36938410 | 36938254 | ID=MS.gene92043.t1.exon5;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36938254 | 36938410 | 36938254 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| chr3.2 | exon | 36938960 | 36939022 | 36938960 | ID=MS.gene92043.t1.exon6;Parent=MS.gene92043.t1 |
| chr3.2 | CDS | 36938960 | 36939022 | 36938960 | ID=cds.MS.gene92043.t1;Parent=MS.gene92043.t1 |
| Gene Sequence |
| Protein sequence |
