Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90010.t1 | XP_013442123.1 | 99.7 | 774 | 2 | 0 | 1 | 774 | 1 | 774 | 0.00E+00 | 1583.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90010.t1 | Q9M2R0 | 91.5 | 774 | 65 | 1 | 1 | 774 | 1 | 773 | 0.0e+00 | 1475.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90010.t1 | A0A072TGP1 | 99.7 | 774 | 2 | 0 | 1 | 774 | 1 | 774 | 0.0e+00 | 1583.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050805 | MS.gene90010 | 0.813923 | 2.00E-51 | -1.69E-46 |
MS.gene050806 | MS.gene90010 | 0.811005 | 8.69E-51 | -1.69E-46 |
MS.gene051263 | MS.gene90010 | 0.81726 | 3.62E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene018794 | MS.gene90010 | PPI |
MS.gene90013 | MS.gene90010 | PPI |
MS.gene056344 | MS.gene90010 | PPI |
MS.gene003921 | MS.gene90010 | PPI |
MS.gene90010 | MS.gene54603 | PPI |
MS.gene84949 | MS.gene90010 | PPI |
MS.gene97681 | MS.gene90010 | PPI |
MS.gene57362 | MS.gene90010 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90010.t1 | MTR_0305s0020 | 99.742 | 774 | 2 | 0 | 1 | 774 | 1 | 774 | 0.0 | 1603 |
MS.gene90010.t1 | MTR_7g092770 | 93.299 | 776 | 49 | 3 | 1 | 774 | 1 | 775 | 0.0 | 1515 |
MS.gene90010.t1 | MTR_4g066150 | 82.581 | 775 | 129 | 4 | 1 | 774 | 1 | 770 | 0.0 | 1331 |
MS.gene90010.t1 | MTR_3g027150 | 68.608 | 790 | 225 | 8 | 7 | 774 | 34 | 822 | 0.0 | 1155 |
MS.gene90010.t1 | MTR_4g023460 | 71.561 | 756 | 209 | 5 | 24 | 774 | 388 | 1142 | 0.0 | 1152 |
MS.gene90010.t1 | MTR_5g010390 | 68.726 | 777 | 233 | 4 | 6 | 774 | 233 | 1007 | 0.0 | 1147 |
MS.gene90010.t1 | MTR_0291s0010 | 67.342 | 790 | 239 | 8 | 3 | 774 | 9 | 797 | 0.0 | 1132 |
MS.gene90010.t1 | MTR_4g033215 | 65.891 | 774 | 252 | 8 | 8 | 774 | 276 | 1044 | 0.0 | 1062 |
MS.gene90010.t1 | MTR_8g031270 | 60.256 | 780 | 292 | 7 | 6 | 774 | 231 | 1003 | 0.0 | 999 |
MS.gene90010.t1 | MTR_7g076900 | 59.264 | 788 | 291 | 9 | 8 | 774 | 235 | 1013 | 0.0 | 971 |
MS.gene90010.t1 | MTR_4g057675 | 58.471 | 785 | 303 | 11 | 2 | 774 | 10 | 783 | 0.0 | 891 |
MS.gene90010.t1 | MTR_4g071870 | 56.178 | 785 | 287 | 12 | 2 | 774 | 10 | 749 | 0.0 | 858 |
MS.gene90010.t1 | MTR_4g107850 | 53.351 | 776 | 318 | 14 | 18 | 774 | 288 | 1038 | 0.0 | 806 |
MS.gene90010.t1 | MTR_6g027540 | 52.294 | 763 | 317 | 13 | 32 | 774 | 274 | 1009 | 0.0 | 783 |
MS.gene90010.t1 | MTR_6g028050 | 48.231 | 763 | 357 | 13 | 30 | 774 | 284 | 1026 | 0.0 | 736 |
MS.gene90010.t1 | MTR_1g015540 | 48.590 | 780 | 369 | 13 | 12 | 774 | 9 | 773 | 0.0 | 697 |
MS.gene90010.t1 | MTR_5g096980 | 41.026 | 780 | 424 | 12 | 8 | 774 | 7 | 763 | 0.0 | 593 |
MS.gene90010.t1 | MTR_4g023250 | 67.692 | 130 | 40 | 1 | 644 | 773 | 1 | 128 | 6.31e-54 | 182 |
MS.gene90010.t1 | MTR_4g023230 | 50.000 | 122 | 46 | 1 | 561 | 682 | 49 | 155 | 2.78e-32 | 123 |
MS.gene90010.t1 | MTR_4g023390 | 50.962 | 104 | 29 | 1 | 647 | 750 | 16 | 97 | 3.49e-25 | 100 |
MS.gene90010.t1 | MTR_4g023240 | 66.667 | 60 | 20 | 0 | 495 | 554 | 10 | 69 | 1.67e-20 | 86.3 |
MS.gene90010.t1 | MTR_7g052280 | 53.165 | 79 | 12 | 3 | 248 | 325 | 1 | 55 | 2.66e-18 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90010.t1 | AT3G57880 | 91.473 | 774 | 65 | 1 | 1 | 774 | 1 | 773 | 0.0 | 1490 |
MS.gene90010.t1 | AT3G57880 | 91.473 | 774 | 65 | 1 | 1 | 774 | 1 | 773 | 0.0 | 1490 |
MS.gene90010.t1 | AT3G57880 | 91.473 | 774 | 65 | 1 | 1 | 774 | 1 | 773 | 0.0 | 1490 |
MS.gene90010.t1 | AT3G57880 | 91.473 | 774 | 65 | 1 | 1 | 774 | 1 | 773 | 0.0 | 1490 |
MS.gene90010.t1 | AT1G51570 | 88.531 | 776 | 87 | 2 | 1 | 774 | 1 | 776 | 0.0 | 1442 |
MS.gene90010.t1 | AT5G12970 | 81.419 | 775 | 137 | 4 | 1 | 774 | 1 | 769 | 0.0 | 1312 |
MS.gene90010.t1 | AT5G06850 | 68.662 | 785 | 228 | 8 | 7 | 774 | 11 | 794 | 0.0 | 1156 |
MS.gene90010.t1 | AT4G11610 | 67.224 | 778 | 242 | 5 | 6 | 774 | 238 | 1011 | 0.0 | 1127 |
MS.gene90010.t1 | AT4G11610 | 67.224 | 778 | 242 | 5 | 6 | 774 | 234 | 1007 | 0.0 | 1127 |
MS.gene90010.t1 | AT4G11610 | 67.224 | 778 | 242 | 5 | 6 | 774 | 101 | 874 | 0.0 | 1127 |
MS.gene90010.t1 | AT5G48060 | 65.897 | 780 | 252 | 8 | 7 | 774 | 259 | 1036 | 0.0 | 1103 |
MS.gene90010.t1 | AT1G22610 | 65.949 | 790 | 248 | 9 | 1 | 774 | 245 | 1029 | 0.0 | 1077 |
MS.gene90010.t1 | AT4G00700 | 59.079 | 782 | 305 | 6 | 6 | 774 | 227 | 1006 | 0.0 | 966 |
MS.gene90010.t1 | AT4G00700 | 59.079 | 782 | 305 | 6 | 6 | 774 | 227 | 1006 | 0.0 | 966 |
MS.gene90010.t1 | AT3G61300 | 58.869 | 778 | 291 | 13 | 4 | 774 | 217 | 972 | 0.0 | 944 |
MS.gene90010.t1 | AT1G04150 | 58.354 | 790 | 288 | 14 | 8 | 774 | 241 | 1012 | 0.0 | 926 |
MS.gene90010.t1 | AT4G20080 | 58.161 | 772 | 305 | 11 | 9 | 774 | 15 | 774 | 0.0 | 920 |
MS.gene90010.t1 | AT1G74720 | 52.506 | 798 | 341 | 13 | 2 | 774 | 297 | 1081 | 0.0 | 823 |
MS.gene90010.t1 | AT3G03680 | 52.734 | 768 | 314 | 15 | 32 | 774 | 274 | 1017 | 0.0 | 782 |
MS.gene90010.t1 | AT5G17980 | 48.810 | 756 | 356 | 12 | 30 | 774 | 314 | 1049 | 0.0 | 749 |
MS.gene90010.t1 | AT5G03435 | 40.927 | 777 | 402 | 25 | 7 | 768 | 6 | 740 | 4.04e-168 | 503 |
MS.gene90010.t1 | AT3G61720 | 38.985 | 808 | 435 | 21 | 7 | 774 | 6 | 795 | 3.03e-167 | 503 |
MS.gene90010.t1 | AT5G03435 | 43.154 | 577 | 293 | 17 | 7 | 574 | 6 | 556 | 1.13e-140 | 426 |
MS.gene90010.t1 | AT5G44760 | 50.750 | 400 | 150 | 9 | 8 | 400 | 5 | 364 | 1.52e-122 | 376 |
MS.gene90010.t1 | AT5G44760 | 36.496 | 137 | 38 | 1 | 540 | 676 | 364 | 451 | 7.02e-20 | 94.0 |
MS.gene90010.t1 | AT1G03370 | 28.980 | 245 | 155 | 11 | 41 | 281 | 3 | 232 | 1.53e-12 | 71.6 |
MS.gene90010.t1 | AT1G03370 | 28.980 | 245 | 155 | 11 | 41 | 281 | 3 | 232 | 1.67e-12 | 72.0 |
Find 213 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAATTCCTTTGCAGTTTA+TGG | 0.091860 | 1.4:+40441859 | MS.gene90010:CDS |
TGAATCAGAACTGTTGTAAT+TGG | 0.188345 | 1.4:-40442799 | None:intergenic |
TCATATCTTGTTCATAATAT+TGG | 0.200473 | 1.4:+40442819 | MS.gene90010:CDS |
TGCGGCGCCAAAGGACTATC+TGG | 0.234328 | 1.4:-40441404 | None:intergenic |
GCTTATTGTGTAGCGAAATA+TGG | 0.253558 | 1.4:+40442172 | MS.gene90010:CDS |
GACTAATTGCTGCGGGAAAA+TGG | 0.273762 | 1.4:+40442749 | MS.gene90010:CDS |
CCCAAGTGGTGTGAAGAAAA+TGG | 0.290205 | 1.4:+40442441 | MS.gene90010:CDS |
CTCCTAAGCTTTGGTATTTG+AGG | 0.293908 | 1.4:+40441597 | MS.gene90010:CDS |
CGGTGCCGCTTAATTTCTTC+AGG | 0.299166 | 1.4:+40443277 | MS.gene90010:CDS |
GCCAAACAGCTCTGGAAATC+TGG | 0.301858 | 1.4:+40442067 | MS.gene90010:CDS |
CACGGCCTTCTGACATTGTT+CGG | 0.307253 | 1.4:+40443013 | MS.gene90010:CDS |
AGAAGGTGGTTATCATGTTT+TGG | 0.311177 | 1.4:+40442006 | MS.gene90010:CDS |
ACCTCTTCCTGATTGGAATC+TGG | 0.317038 | 1.4:+40442881 | MS.gene90010:CDS |
GCATCCGAGTGCCAAGCTTC+TGG | 0.322766 | 1.4:-40441518 | None:intergenic |
CACATGAGGGTTTGTCTAGA+AGG | 0.326790 | 1.4:+40441989 | MS.gene90010:CDS |
TAGAAAGGGTGATAAGGTTA+AGG | 0.328443 | 1.4:+40441445 | MS.gene90010:CDS |
CCCAATACTTCTTCTTTGTT+CGG | 0.334931 | 1.4:-40441830 | None:intergenic |
TTTCTCGAAGGACCGGCTTC+AGG | 0.344206 | 1.4:+40441280 | MS.gene90010:CDS |
GAAGGACCGGCTTCAGGCCT+CGG | 0.355700 | 1.4:+40441286 | MS.gene90010:CDS |
TCCAGAGCTGTTTGGCCGTT+GGG | 0.357398 | 1.4:-40442060 | None:intergenic |
CCGAACAAAGAAGAAGTATT+GGG | 0.371136 | 1.4:+40441830 | MS.gene90010:CDS |
TTCCTTTACCTCTTCCTGAT+TGG | 0.374360 | 1.4:+40442874 | MS.gene90010:CDS |
CCGATGCTCTTGCAAATATT+AGG | 0.375111 | 1.4:+40441558 | MS.gene90010:CDS |
CCTTTATGTGAGGGTTGTTA+AGG | 0.377947 | 1.4:+40441127 | MS.gene90010:CDS |
GTTAAGCTCGGGAACTATAA+AGG | 0.383225 | 1.4:+40441203 | MS.gene90010:CDS |
CTTTGGCGCCGCAATGGTAT+AGG | 0.384411 | 1.4:+40441414 | MS.gene90010:CDS |
TTTATTTATCTCCTAAGCTT+TGG | 0.384714 | 1.4:+40441588 | MS.gene90010:CDS |
TTTGCACCTCCAGCTTTGTC+AGG | 0.385021 | 1.4:-40442328 | None:intergenic |
TCCTAAGCTTTGGTATTTGA+GGG | 0.385923 | 1.4:+40441598 | MS.gene90010:CDS |
GGCTAATTTCTTCAGAATCA+TGG | 0.388398 | 1.4:+40442714 | MS.gene90010:CDS |
TTGGAATCTGGCACTATAGA+TGG | 0.393642 | 1.4:+40442893 | MS.gene90010:CDS |
CCGAGCTTAACTTCGGCATA+AGG | 0.395229 | 1.4:-40441191 | None:intergenic |
CAGCTCTGGAAATCTGGAAT+TGG | 0.397726 | 1.4:+40442073 | MS.gene90010:CDS |
GAGAGCCGAGTGTCCATGTT+AGG | 0.399650 | 1.4:-40442931 | None:intergenic |
GGTTCGATCAAATTTGCAAC+TGG | 0.404361 | 1.4:+40442770 | MS.gene90010:CDS |
GAGAGTTAATGCTGGCTGTT+TGG | 0.410843 | 1.4:+40441468 | MS.gene90010:CDS |
ACAAACAGTGCTGTTGCTCT+TGG | 0.411446 | 1.4:-40443141 | None:intergenic |
CCTTAACAACCCTCACATAA+AGG | 0.412120 | 1.4:-40441127 | None:intergenic |
CGTTGCTGCGGAACCATTTG+AGG | 0.412932 | 1.4:+40441772 | MS.gene90010:CDS |
GCCCAACGGCCAAACAGCTC+TGG | 0.415222 | 1.4:+40442059 | MS.gene90010:CDS |
GGAATTGGTGTTCTTGAAGT+TGG | 0.415516 | 1.4:+40442088 | MS.gene90010:CDS |
TTTGAATGAGGTTCCGAAAC+GGG | 0.416032 | 1.4:+40441376 | MS.gene90010:CDS |
TCGGATGCCGCGACTGTTAG+TGG | 0.420415 | 1.4:+40441533 | MS.gene90010:CDS |
GGGTGTATATAGTGCATCTT+TGG | 0.421466 | 1.4:-40442541 | None:intergenic |
TTGCCTTCAAAGGATGTTAC+CGG | 0.422723 | 1.4:+40441158 | MS.gene90010:CDS |
TCTTTCAACAGAAAATCTTC+AGG | 0.424219 | 1.4:-40441023 | None:intergenic |
AACCAATCCTGAATGGAATC+AGG | 0.430195 | 1.4:+40441250 | MS.gene90010:CDS |
AGACTTACAGCCAACTGATA+AGG | 0.432910 | 1.4:+40441640 | MS.gene90010:CDS |
GGCTAAGGATTTGCCTTCAA+AGG | 0.432921 | 1.4:+40441148 | MS.gene90010:CDS |
TGTCAGAAGGCCGTGAAGTC+GGG | 0.434203 | 1.4:-40443005 | None:intergenic |
GGCTGCAGTCTTTGCTGAGC+TGG | 0.435790 | 1.4:+40443112 | MS.gene90010:CDS |
AAAATCAGCGGCTCCTCAAA+TGG | 0.439031 | 1.4:-40441785 | None:intergenic |
TTCCAGAGCTGTTTGGCCGT+TGG | 0.439868 | 1.4:-40442061 | None:intergenic |
GTATAGGTTGGAGGATAGAA+AGG | 0.443612 | 1.4:+40441430 | MS.gene90010:CDS |
CGCTGAGCCACCGCTGAGAA+AGG | 0.446361 | 1.4:+40442633 | MS.gene90010:CDS |
TCCAGATTTCCAGAGCTGTT+TGG | 0.447417 | 1.4:-40442068 | None:intergenic |
AAGAAATTAAATTTGCAAGT+AGG | 0.449686 | 1.4:+40441963 | MS.gene90010:CDS |
AGTTGGGATATTGAGTGCTC+AGG | 0.452833 | 1.4:+40442105 | MS.gene90010:CDS |
CTTATTGTGTAGCGAAATAT+GGG | 0.456005 | 1.4:+40442173 | MS.gene90010:CDS |
GACTTACAGCCAACTGATAA+GGG | 0.456275 | 1.4:+40441641 | MS.gene90010:CDS |
GAATTGGTGTTCTTGAAGTT+GGG | 0.456895 | 1.4:+40442089 | MS.gene90010:CDS |
CCGGCTTCAGGCCTCGGTGT+TGG | 0.457897 | 1.4:+40441292 | MS.gene90010:CDS |
GCTTCAGGCCTCGGTGTTGG+AGG | 0.458158 | 1.4:+40441295 | MS.gene90010:CDS |
AGAAAGGGTGATAAGGTTAA+GGG | 0.464699 | 1.4:+40441446 | MS.gene90010:CDS |
TCGACACATTCCCGACTTCA+CGG | 0.468689 | 1.4:+40442995 | MS.gene90010:CDS |
CAAGTTGTGGCTCTTCTGAC+CGG | 0.473110 | 1.4:+40443210 | MS.gene90010:CDS |
CCTTGCACTGTGATTACAAT+TGG | 0.473689 | 1.4:+40442277 | MS.gene90010:CDS |
AACTGATAAGGGTAGATATC+CGG | 0.474666 | 1.4:+40441652 | MS.gene90010:CDS |
CGAGCTGGCTAACGGTCAAC+GGG | 0.475727 | 1.4:-40442561 | None:intergenic |
AACTCTTCATCAAGTTCGTC+CGG | 0.476174 | 1.4:-40442973 | None:intergenic |
ATTCAAGGATTGGTAAGGTA+AGG | 0.476487 | 1.4:+40442353 | MS.gene90010:CDS |
GAAAATGGGTGAAATTCAAT+TGG | 0.477497 | 1.4:+40442456 | MS.gene90010:CDS |
ACTGTTGGTAAGATAAGTTC+AGG | 0.477704 | 1.4:-40442850 | None:intergenic |
TGTGAGGGTTGTTAAGGCTA+AGG | 0.478542 | 1.4:+40441133 | MS.gene90010:CDS |
GGAGGATAGAAAGGGTGATA+AGG | 0.479059 | 1.4:+40441439 | MS.gene90010:CDS |
GCTAATTTCTTCAGAATCAT+GGG | 0.479725 | 1.4:+40442715 | MS.gene90010:CDS |
ACCTAGTATTCACTGGTTTG+TGG | 0.480851 | 1.4:-40441895 | None:intergenic |
AACCTGATTCCATTCAGGAT+TGG | 0.483996 | 1.4:-40441252 | None:intergenic |
GGCTGTTTGGATGGGTACAC+AGG | 0.485124 | 1.4:+40441481 | MS.gene90010:CDS |
CTGGAGGTGCAAAAGATTCA+AGG | 0.487820 | 1.4:+40442338 | MS.gene90010:CDS |
ATGAAGCATTTCCAGAAGCT+TGG | 0.489119 | 1.4:+40441507 | MS.gene90010:CDS |
TTTGAGGGTTAATGTGATTG+AGG | 0.490505 | 1.4:+40441613 | MS.gene90010:CDS |
GCGGCGCCAAAGGACTATCT+GGG | 0.491089 | 1.4:-40441403 | None:intergenic |
GTTGTGAAGGACGACTTCAT+TGG | 0.491403 | 1.4:+40441338 | MS.gene90010:CDS |
ACCACAAACCAGTGAATACT+AGG | 0.491540 | 1.4:+40441894 | MS.gene90010:CDS |
GTTGAGTATATGCTTGATGT+TGG | 0.492238 | 1.4:+40442661 | MS.gene90010:CDS |
GTTAATGCTGGCTGTTTGGA+TGG | 0.493096 | 1.4:+40441472 | MS.gene90010:CDS |
AAAGAGACCAAACCCCATCT+TGG | 0.497107 | 1.4:+40441041 | MS.gene90010:CDS |
TTCCAATCAGGAAGAGGTAA+AGG | 0.498405 | 1.4:-40442876 | None:intergenic |
CTCAACAAGGTCATATGTGC+TGG | 0.498939 | 1.4:-40441093 | None:intergenic |
TCCATGTTAGGAGGGTGTCT+TGG | 0.501157 | 1.4:-40442919 | None:intergenic |
TCCGAACAAAGAAGAAGTAT+TGG | 0.503767 | 1.4:+40441829 | MS.gene90010:CDS |
CGGTCAGAAGAGCCACAACT+TGG | 0.507292 | 1.4:-40443209 | None:intergenic |
GGACTAGAATCTCTCTTAGC+AGG | 0.511755 | 1.4:+40441714 | MS.gene90010:CDS |
TCACGCTGATTCAGCTCATC+CGG | 0.512085 | 1.4:+40442954 | MS.gene90010:CDS |
TATAGTGCCAGATTCCAATC+AGG | 0.513655 | 1.4:-40442888 | None:intergenic |
TTAGCCAGCTCGACAGTTTG+AGG | 0.514684 | 1.4:+40442572 | MS.gene90010:CDS |
ATGTCAGAAGGCCGTGAAGT+CGG | 0.514758 | 1.4:-40443006 | None:intergenic |
AACAGAAAATCTTCAGGCGG+TGG | 0.514836 | 1.4:-40441017 | None:intergenic |
AGAAGAAAACCAATCCTGAA+TGG | 0.515488 | 1.4:+40441243 | MS.gene90010:CDS |
ACCCTCAAATACCAAAGCTT+AGG | 0.516986 | 1.4:-40441599 | None:intergenic |
GATCGACTTAGAAGCATAGC+TGG | 0.518904 | 1.4:+40443045 | MS.gene90010:CDS |
GGTGCAAAAGATTCAAGGAT+TGG | 0.520817 | 1.4:+40442343 | MS.gene90010:CDS |
TCGAGCTGGCTAACGGTCAA+CGG | 0.520943 | 1.4:-40442562 | None:intergenic |
ATGTCTCAAAACGTAAATTC+CGG | 0.524528 | 1.4:-40443229 | None:intergenic |
GTTGGGATATTGAGTGCTCA+GGG | 0.525396 | 1.4:+40442106 | MS.gene90010:CDS |
CACCACTTGGGTGAAGAACT+AGG | 0.526449 | 1.4:-40442429 | None:intergenic |
TTAAACCACCTAGTATTCAC+TGG | 0.527121 | 1.4:-40441902 | None:intergenic |
AGCCGAGTGTCCATGTTAGG+AGG | 0.527424 | 1.4:-40442928 | None:intergenic |
TTGCATGGTCCTGACAAAGC+TGG | 0.527750 | 1.4:+40442319 | MS.gene90010:CDS |
AGCATGCAATCAGTTCTTGC+AGG | 0.532832 | 1.4:-40443306 | None:intergenic |
TTCCTTTGCAGTTTATGGAT+AGG | 0.533408 | 1.4:+40441864 | MS.gene90010:CDS |
CCAAGTGGTGTGAAGAAAAT+GGG | 0.533679 | 1.4:+40442442 | MS.gene90010:CDS |
ATTTGAATGAGGTTCCGAAA+CGG | 0.535448 | 1.4:+40441375 | MS.gene90010:CDS |
TGCAAGTAGGATTCACATGA+GGG | 0.537596 | 1.4:+40441976 | MS.gene90010:CDS |
TTCTTCTCATACTCCACATG+TGG | 0.540825 | 1.4:-40442687 | None:intergenic |
CTATACCATTGCGGCGCCAA+AGG | 0.545107 | 1.4:-40441413 | None:intergenic |
AAGAAATTAAGCGGCACCGA+TGG | 0.545420 | 1.4:-40443273 | None:intergenic |
AGAAGAGCCACAACTTGGAA+TGG | 0.547838 | 1.4:-40443204 | None:intergenic |
CTGCCGGTAACATCCTTTGA+AGG | 0.549728 | 1.4:-40441161 | None:intergenic |
GGCGCCGCAATGGTATAGGT+TGG | 0.550817 | 1.4:+40441418 | MS.gene90010:CDS |
ATAGTTCCCGAGCTTAACTT+CGG | 0.551532 | 1.4:-40441198 | None:intergenic |
GTGAAGAACTAGGAGTGGAT+AGG | 0.551635 | 1.4:-40442419 | None:intergenic |
GCCAAGACACCCTCCTAACA+TGG | 0.551812 | 1.4:+40442918 | MS.gene90010:CDS |
GGCATAAGGATCACAACTGC+CGG | 0.556517 | 1.4:-40441177 | None:intergenic |
TGTGTGGTTTGATTTGAATG+AGG | 0.557487 | 1.4:+40441364 | MS.gene90010:CDS |
TGCCGCTTAATTTCTTCAGG+AGG | 0.557905 | 1.4:+40443280 | MS.gene90010:CDS |
GGATTTGATGTTCGTTGCTG+CGG | 0.557925 | 1.4:+40441760 | MS.gene90010:CDS |
TAGCGAAATATGGGCAGAAG+TGG | 0.558621 | 1.4:+40442182 | MS.gene90010:CDS |
AAAAGATTCAAGGATTGGTA+AGG | 0.560457 | 1.4:+40442348 | MS.gene90010:CDS |
CCTAATATTTGCAAGAGCAT+CGG | 0.563372 | 1.4:-40441558 | None:intergenic |
AGACCAAACCCCATCTTGGA+GGG | 0.563491 | 1.4:+40441045 | MS.gene90010:CDS |
CCAACACCGAGGCCTGAAGC+CGG | 0.564103 | 1.4:-40441292 | None:intergenic |
GAGACCAAACCCCATCTTGG+AGG | 0.564193 | 1.4:+40441044 | MS.gene90010:CDS |
ACGACTTCATTGGTCGTGTG+TGG | 0.564266 | 1.4:+40441348 | MS.gene90010:CDS |
TTTGATAATTGTCATTTGCA+TGG | 0.564967 | 1.4:+40442304 | MS.gene90010:CDS |
ATAGTCCTTTGGCGCCGCAA+TGG | 0.565983 | 1.4:+40441408 | MS.gene90010:CDS |
CTCCTATCCATAAACTGCAA+AGG | 0.566217 | 1.4:-40441866 | None:intergenic |
GATGCCTCAAACTGTCGAGC+TGG | 0.566280 | 1.4:-40442576 | None:intergenic |
ATTTCCAGAAGCTTGGCACT+CGG | 0.566792 | 1.4:+40441514 | MS.gene90010:CDS |
AAAACATATCATTGTAGAAG+GGG | 0.567643 | 1.4:+40441931 | MS.gene90010:CDS |
CCTTATGCCGAAGTTAAGCT+CGG | 0.570182 | 1.4:+40441191 | MS.gene90010:CDS |
GGTGGAATGAGCAATATACT+TGG | 0.572552 | 1.4:+40442242 | MS.gene90010:CDS |
GCCAGATTCCAATCAGGAAG+AGG | 0.575406 | 1.4:-40442882 | None:intergenic |
GGATATCTACCCTTATCAGT+TGG | 0.576446 | 1.4:-40441650 | None:intergenic |
TATAGGTTGGAGGATAGAAA+GGG | 0.576864 | 1.4:+40441431 | MS.gene90010:CDS |
TTGAGTGGACTAATTGCTGC+GGG | 0.577897 | 1.4:+40442742 | MS.gene90010:CDS |
CTCCTAGTTCTTCACCCAAG+TGG | 0.579462 | 1.4:+40442427 | MS.gene90010:CDS |
CAAACTGTCGAGCTGGCTAA+CGG | 0.580833 | 1.4:-40442569 | None:intergenic |
GCCGCAATGGTATAGGTTGG+AGG | 0.582372 | 1.4:+40441421 | MS.gene90010:CDS |
ACTTAGCTACTCAAGGAGAA+AGG | 0.584009 | 1.4:+40443091 | MS.gene90010:CDS |
TGTGACTCCATTCCAAGTTG+TGG | 0.584358 | 1.4:+40443197 | MS.gene90010:CDS |
ATCAAATCCTCGTTCCACAA+TGG | 0.587304 | 1.4:-40441746 | None:intergenic |
ACCAAACCCCATCTTGGAGG+GGG | 0.588344 | 1.4:+40441047 | MS.gene90010:CDS |
TTGCAAGTAGGATTCACATG+AGG | 0.591241 | 1.4:+40441975 | MS.gene90010:CDS |
GGAAGCTTATGACGGAACCT+CGG | 0.592244 | 1.4:-40443252 | None:intergenic |
GGCAGAAGTGGATTCGAACA+AGG | 0.592797 | 1.4:+40442194 | MS.gene90010:CDS |
TTGATGTTGGTTCCCACATG+TGG | 0.601847 | 1.4:+40442674 | MS.gene90010:CDS |
AAGAGGTAAAGGAAAACTGT+TGG | 0.606111 | 1.4:-40442865 | None:intergenic |
TTAATGCTGGCTGTTTGGAT+GGG | 0.606592 | 1.4:+40441473 | MS.gene90010:CDS |
CCAATTGTAATCACAGTGCA+AGG | 0.607117 | 1.4:-40442277 | None:intergenic |
ACTACCTCCTTTCTCAGCGG+TGG | 0.608379 | 1.4:-40442640 | None:intergenic |
ACCCTCCTAACATGGACACT+CGG | 0.608381 | 1.4:+40442926 | MS.gene90010:CDS |
GGTAGGATACAGACTGTGGT+TGG | 0.612469 | 1.4:+40443066 | MS.gene90010:CDS |
GATGCAATACCTTTATGTGA+GGG | 0.612976 | 1.4:+40441118 | MS.gene90010:CDS |
GACCAAACCCCATCTTGGAG+GGG | 0.614269 | 1.4:+40441046 | MS.gene90010:CDS |
CGGCGCCAAAGGACTATCTG+GGG | 0.614676 | 1.4:-40441402 | None:intergenic |
CTCATCCGAACAATGTCAGA+AGG | 0.615248 | 1.4:-40443018 | None:intergenic |
GGAGGTTACTGTGAAAGATA+AGG | 0.615500 | 1.4:+40441313 | MS.gene90010:CDS |
CTTATGCCGAAGTTAAGCTC+GGG | 0.616554 | 1.4:+40441192 | MS.gene90010:CDS |
TTCAACAGAAAATCTTCAGG+CGG | 0.617196 | 1.4:-40441020 | None:intergenic |
GGTTAAGGGAGAGTTAATGC+TGG | 0.618376 | 1.4:+40441460 | MS.gene90010:CDS |
AGAATCATGGGAGTATTGAG+TGG | 0.619315 | 1.4:+40442727 | MS.gene90010:CDS |
AGATGCAATACCTTTATGTG+AGG | 0.619566 | 1.4:+40441117 | MS.gene90010:CDS |
CAGCAGTGATCTTCGCCCAA+CGG | 0.622948 | 1.4:+40442045 | MS.gene90010:CDS |
GCCGAGTGTCCATGTTAGGA+GGG | 0.626241 | 1.4:-40442927 | None:intergenic |
TTTGAGCAGCGAAAATGCAG+AGG | 0.627054 | 1.4:+40440994 | None:intergenic |
ATGAGGGTTTGTCTAGAAGG+TGG | 0.627125 | 1.4:+40441992 | MS.gene90010:CDS |
GTGGAATGAGCAATATACTT+GGG | 0.627653 | 1.4:+40442243 | MS.gene90010:CDS |
CTTGGGTGAAGAACTAGGAG+TGG | 0.630605 | 1.4:-40442424 | None:intergenic |
TGAGCCACCGCTGAGAAAGG+AGG | 0.630758 | 1.4:+40442636 | MS.gene90010:CDS |
GACTTAGAAGCATAGCTGGT+AGG | 0.632636 | 1.4:+40443049 | MS.gene90010:CDS |
GGTATTGCATCTGCTCAACA+AGG | 0.633340 | 1.4:-40441106 | None:intergenic |
TAGTGCATCTTTGGCAACAG+AGG | 0.634644 | 1.4:-40442532 | None:intergenic |
GTTCCGTCATAAGCTTCCAT+CGG | 0.642868 | 1.4:+40443257 | MS.gene90010:CDS |
TTGATAGCTTTATGCCGAGG+TGG | 0.644610 | 1.4:+40442224 | MS.gene90010:CDS |
GAATGAGCAATATACTTGGG+AGG | 0.645094 | 1.4:+40442246 | MS.gene90010:CDS |
GAAAGATAAGGATGTTGTGA+AGG | 0.645624 | 1.4:+40441325 | MS.gene90010:CDS |
GTTGGCGACTTAGCTACTCA+AGG | 0.648005 | 1.4:+40443084 | MS.gene90010:CDS |
GCAGGAGTATCAATCCATTG+TGG | 0.649222 | 1.4:+40441732 | MS.gene90010:CDS |
GTGGAGTATGAGAAGAAGCA+AGG | 0.650662 | 1.4:+40442693 | MS.gene90010:CDS |
ATCGGTTCCACTAACAGTCG+CGG | 0.651678 | 1.4:-40441540 | None:intergenic |
AGCCTCCTGAAGAAATTAAG+CGG | 0.651985 | 1.4:-40443282 | None:intergenic |
GTGAAATTCAATTGGCTGTG+AGG | 0.654400 | 1.4:+40442464 | MS.gene90010:CDS |
GCACCGATGGAAGCTTATGA+CGG | 0.656076 | 1.4:-40443260 | None:intergenic |
GAATCTGGCACTATAGATGG+AGG | 0.658514 | 1.4:+40442896 | MS.gene90010:CDS |
GGAACTATAAAGGAACTACT+CGG | 0.658774 | 1.4:+40441213 | MS.gene90010:CDS |
ATTGAGTGGACTAATTGCTG+CGG | 0.661101 | 1.4:+40442741 | MS.gene90010:CDS |
CTACTCAGATAGTTTCAATG+AGG | 0.663957 | 1.4:+40442602 | MS.gene90010:CDS |
TCATTGATAGCTTTATGCCG+AGG | 0.666881 | 1.4:+40442221 | MS.gene90010:CDS |
TATCAATCCATTGTGGAACG+AGG | 0.672925 | 1.4:+40441739 | MS.gene90010:CDS |
TCCTCCAACCTATACCATTG+CGG | 0.673444 | 1.4:-40441422 | None:intergenic |
GGCGCCAAAGGACTATCTGG+GGG | 0.676642 | 1.4:-40441401 | None:intergenic |
CGAACAAAGAAGAAGTATTG+GGG | 0.685152 | 1.4:+40441831 | MS.gene90010:CDS |
TCTTCCACACTCAAAATCAG+CGG | 0.687134 | 1.4:-40441797 | None:intergenic |
TCTTCTCATACTCCACATGT+GGG | 0.689277 | 1.4:-40442686 | None:intergenic |
AGCTGGTAGGATACAGACTG+TGG | 0.703110 | 1.4:+40443062 | MS.gene90010:CDS |
ACAAAGAAGAAGTATTGGGG+AGG | 0.704686 | 1.4:+40441834 | MS.gene90010:CDS |
CATGGTCCTGACAAAGCTGG+AGG | 0.704809 | 1.4:+40442322 | MS.gene90010:CDS |
GTATATTGCTCATTCCACCT+CGG | 0.716433 | 1.4:-40442238 | None:intergenic |
TCAACTACCTCCTTTCTCAG+CGG | 0.739237 | 1.4:-40442643 | None:intergenic |
CACAGTAACCTCCAACACCG+AGG | 0.741552 | 1.4:-40441303 | None:intergenic |
ACAAACCAGTGAATACTAGG+TGG | 0.765072 | 1.4:+40441897 | MS.gene90010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACATATCATTGTAGAA+GGG | + | chr1.4:40441930-40441949 | MS.gene90010:CDS | 20.0% |
!! | AAGAAATTAAATTTGCAAGT+AGG | + | chr1.4:40441963-40441982 | MS.gene90010:CDS | 20.0% |
!! | TCATATCTTGTTCATAATAT+TGG | + | chr1.4:40442819-40442838 | MS.gene90010:CDS | 20.0% |
! | AAAACATATCATTGTAGAAG+GGG | + | chr1.4:40441931-40441950 | MS.gene90010:CDS | 25.0% |
! | AATGAAAAATAAAGATGGGA+GGG | + | chr1.4:40442138-40442157 | MS.gene90010:CDS | 25.0% |
! | ATGCCAATGAAAAATAAAGA+TGG | + | chr1.4:40442133-40442152 | MS.gene90010:CDS | 25.0% |
! | GAAAAACATATCATTGTAGA+AGG | + | chr1.4:40441929-40441948 | MS.gene90010:CDS | 25.0% |
! | TGCCAATGAAAAATAAAGAT+GGG | + | chr1.4:40442134-40442153 | MS.gene90010:CDS | 25.0% |
! | TTTATTTATCTCCTAAGCTT+TGG | + | chr1.4:40441588-40441607 | MS.gene90010:CDS | 25.0% |
!! | TTTGATAATTGTCATTTGCA+TGG | + | chr1.4:40442304-40442323 | MS.gene90010:CDS | 25.0% |
ATGAAAAATAAAGATGGGAG+GGG | + | chr1.4:40442139-40442158 | MS.gene90010:CDS | 30.0% | |
ATGTCTCAAAACGTAAATTC+CGG | - | chr1.4:40443232-40443251 | None:intergenic | 30.0% | |
CAATGAAAAATAAAGATGGG+AGG | + | chr1.4:40442137-40442156 | MS.gene90010:CDS | 30.0% | |
CTTATTGTGTAGCGAAATAT+GGG | + | chr1.4:40442173-40442192 | MS.gene90010:CDS | 30.0% | |
GAAAATGGGTGAAATTCAAT+TGG | + | chr1.4:40442456-40442475 | MS.gene90010:CDS | 30.0% | |
GCTAATTTCTTCAGAATCAT+GGG | + | chr1.4:40442715-40442734 | MS.gene90010:CDS | 30.0% | |
TCTTTCAACAGAAAATCTTC+AGG | - | chr1.4:40441026-40441045 | None:intergenic | 30.0% | |
TGAATCAGAACTGTTGTAAT+TGG | - | chr1.4:40442802-40442821 | None:intergenic | 30.0% | |
! | AAAAGATTCAAGGATTGGTA+AGG | + | chr1.4:40442348-40442367 | MS.gene90010:CDS | 30.0% |
! | AGTTTTTGTGAAGGCTATTT+TGG | + | chr1.4:40441676-40441695 | MS.gene90010:CDS | 30.0% |
!! | GTTTTTGTGAAGGCTATTTT+GGG | + | chr1.4:40441677-40441696 | MS.gene90010:CDS | 30.0% |
!! | TTTTTGTGAAGGCTATTTTG+GGG | + | chr1.4:40441678-40441697 | MS.gene90010:CDS | 30.0% |
!!! | CTCCCATCTTTATTTTTCAT+TGG | - | chr1.4:40442139-40442158 | None:intergenic | 30.0% |
AACTGATAAGGGTAGATATC+CGG | + | chr1.4:40441652-40441671 | MS.gene90010:CDS | 35.0% | |
AAGAGGTAAAGGAAAACTGT+TGG | - | chr1.4:40442868-40442887 | None:intergenic | 35.0% | |
AGAAAGGGTGATAAGGTTAA+GGG | + | chr1.4:40441446-40441465 | MS.gene90010:CDS | 35.0% | |
AGAAGAAAACCAATCCTGAA+TGG | + | chr1.4:40441243-40441262 | MS.gene90010:CDS | 35.0% | |
AGATGCAATACCTTTATGTG+AGG | + | chr1.4:40441117-40441136 | MS.gene90010:CDS | 35.0% | |
ATAGCCTTCACAAAAACTTC+CGG | - | chr1.4:40441674-40441693 | None:intergenic | 35.0% | |
ATTTGAATGAGGTTCCGAAA+CGG | + | chr1.4:40441375-40441394 | MS.gene90010:CDS | 35.0% | |
CCCAATACTTCTTCTTTGTT+CGG | - | chr1.4:40441833-40441852 | None:intergenic | 35.0% | |
CTACTCAGATAGTTTCAATG+AGG | + | chr1.4:40442602-40442621 | MS.gene90010:CDS | 35.0% | |
GAAAGATAAGGATGTTGTGA+AGG | + | chr1.4:40441325-40441344 | MS.gene90010:CDS | 35.0% | |
GATGCAATACCTTTATGTGA+GGG | + | chr1.4:40441118-40441137 | MS.gene90010:CDS | 35.0% | |
GCTTATTGTGTAGCGAAATA+TGG | + | chr1.4:40442172-40442191 | MS.gene90010:CDS | 35.0% | |
GGAACTATAAAGGAACTACT+CGG | + | chr1.4:40441213-40441232 | MS.gene90010:CDS | 35.0% | |
GGCTAATTTCTTCAGAATCA+TGG | + | chr1.4:40442714-40442733 | MS.gene90010:CDS | 35.0% | |
GTGGAATGAGCAATATACTT+GGG | + | chr1.4:40442243-40442262 | MS.gene90010:CDS | 35.0% | |
GTTGAGTATATGCTTGATGT+TGG | + | chr1.4:40442661-40442680 | MS.gene90010:CDS | 35.0% | |
TAGAAAGGGTGATAAGGTTA+AGG | + | chr1.4:40441445-40441464 | MS.gene90010:CDS | 35.0% | |
TGAAAAATAAAGATGGGAGG+GGG | + | chr1.4:40442140-40442159 | MS.gene90010:CDS | 35.0% | |
TGCAATTCCTTTGCAGTTTA+TGG | + | chr1.4:40441859-40441878 | MS.gene90010:CDS | 35.0% | |
TTAAACCACCTAGTATTCAC+TGG | - | chr1.4:40441905-40441924 | None:intergenic | 35.0% | |
TTCAACAGAAAATCTTCAGG+CGG | - | chr1.4:40441023-40441042 | None:intergenic | 35.0% | |
TTCCTTTGCAGTTTATGGAT+AGG | + | chr1.4:40441864-40441883 | MS.gene90010:CDS | 35.0% | |
TTTGAGGGTTAATGTGATTG+AGG | + | chr1.4:40441613-40441632 | MS.gene90010:CDS | 35.0% | |
! | ACTGTTGGTAAGATAAGTTC+AGG | - | chr1.4:40442853-40442872 | None:intergenic | 35.0% |
! | AGAAGGTGGTTATCATGTTT+TGG | + | chr1.4:40442006-40442025 | MS.gene90010:CDS | 35.0% |
! | ATATCCGGAAGTTTTTGTGA+AGG | + | chr1.4:40441667-40441686 | MS.gene90010:CDS | 35.0% |
! | ATTCAAGGATTGGTAAGGTA+AGG | + | chr1.4:40442353-40442372 | MS.gene90010:CDS | 35.0% |
! | CCTAATATTTGCAAGAGCAT+CGG | - | chr1.4:40441561-40441580 | None:intergenic | 35.0% |
! | GAATTGGTGTTCTTGAAGTT+GGG | + | chr1.4:40442089-40442108 | MS.gene90010:CDS | 35.0% |
! | TATAGGTTGGAGGATAGAAA+GGG | + | chr1.4:40441431-40441450 | MS.gene90010:CDS | 35.0% |
! | TCCGAACAAAGAAGAAGTAT+TGG | + | chr1.4:40441829-40441848 | MS.gene90010:CDS | 35.0% |
! | TCCTAAGCTTTGGTATTTGA+GGG | + | chr1.4:40441598-40441617 | MS.gene90010:CDS | 35.0% |
!! | CCGAACAAAGAAGAAGTATT+GGG | + | chr1.4:40441830-40441849 | MS.gene90010:CDS | 35.0% |
!! | CGAACAAAGAAGAAGTATTG+GGG | + | chr1.4:40441831-40441850 | MS.gene90010:CDS | 35.0% |
!! | TGTGTGGTTTGATTTGAATG+AGG | + | chr1.4:40441364-40441383 | MS.gene90010:CDS | 35.0% |
AACCAATCCTGAATGGAATC+AGG | + | chr1.4:40441250-40441269 | MS.gene90010:CDS | 40.0% | |
AACCTGATTCCATTCAGGAT+TGG | - | chr1.4:40441255-40441274 | None:intergenic | 40.0% | |
AACTCTTCATCAAGTTCGTC+CGG | - | chr1.4:40442976-40442995 | None:intergenic | 40.0% | |
ACAAACCAGTGAATACTAGG+TGG | + | chr1.4:40441897-40441916 | MS.gene90010:CDS | 40.0% | |
ACCACAAACCAGTGAATACT+AGG | + | chr1.4:40441894-40441913 | MS.gene90010:CDS | 40.0% | |
ACCCTCAAATACCAAAGCTT+AGG | - | chr1.4:40441602-40441621 | None:intergenic | 40.0% | |
ACTTAGCTACTCAAGGAGAA+AGG | + | chr1.4:40443091-40443110 | MS.gene90010:CDS | 40.0% | |
AGACTTACAGCCAACTGATA+AGG | + | chr1.4:40441640-40441659 | MS.gene90010:CDS | 40.0% | |
AGCCTCCTGAAGAAATTAAG+CGG | - | chr1.4:40443285-40443304 | None:intergenic | 40.0% | |
ATAGTTCCCGAGCTTAACTT+CGG | - | chr1.4:40441201-40441220 | None:intergenic | 40.0% | |
ATCAAATCCTCGTTCCACAA+TGG | - | chr1.4:40441749-40441768 | None:intergenic | 40.0% | |
CCAAGTGGTGTGAAGAAAAT+GGG | + | chr1.4:40442442-40442461 | MS.gene90010:CDS | 40.0% | |
CCAATTGTAATCACAGTGCA+AGG | - | chr1.4:40442280-40442299 | None:intergenic | 40.0% | |
CCGATGCTCTTGCAAATATT+AGG | + | chr1.4:40441558-40441577 | MS.gene90010:CDS | 40.0% | |
CCTTAACAACCCTCACATAA+AGG | - | chr1.4:40441130-40441149 | None:intergenic | 40.0% | |
CCTTGCACTGTGATTACAAT+TGG | + | chr1.4:40442277-40442296 | MS.gene90010:CDS | 40.0% | |
CCTTTATGTGAGGGTTGTTA+AGG | + | chr1.4:40441127-40441146 | MS.gene90010:CDS | 40.0% | |
CTCCTATCCATAAACTGCAA+AGG | - | chr1.4:40441869-40441888 | None:intergenic | 40.0% | |
GAATGAGCAATATACTTGGG+AGG | + | chr1.4:40442246-40442265 | MS.gene90010:CDS | 40.0% | |
GACTTACAGCCAACTGATAA+GGG | + | chr1.4:40441641-40441660 | MS.gene90010:CDS | 40.0% | |
GCAAAAACCTGATTCCATTC+AGG | - | chr1.4:40441260-40441279 | None:intergenic | 40.0% | |
GGAGGTTACTGTGAAAGATA+AGG | + | chr1.4:40441313-40441332 | MS.gene90010:CDS | 40.0% | |
GGATATCTACCCTTATCAGT+TGG | - | chr1.4:40441653-40441672 | None:intergenic | 40.0% | |
GGGTGTATATAGTGCATCTT+TGG | - | chr1.4:40442544-40442563 | None:intergenic | 40.0% | |
GGTGCAAAAGATTCAAGGAT+TGG | + | chr1.4:40442343-40442362 | MS.gene90010:CDS | 40.0% | |
GGTGGAATGAGCAATATACT+TGG | + | chr1.4:40442242-40442261 | MS.gene90010:CDS | 40.0% | |
GGTTCGATCAAATTTGCAAC+TGG | + | chr1.4:40442770-40442789 | MS.gene90010:CDS | 40.0% | |
GTATATTGCTCATTCCACCT+CGG | - | chr1.4:40442241-40442260 | None:intergenic | 40.0% | |
GTGAAATTCAATTGGCTGTG+AGG | + | chr1.4:40442464-40442483 | MS.gene90010:CDS | 40.0% | |
GTTAAGCTCGGGAACTATAA+AGG | + | chr1.4:40441203-40441222 | MS.gene90010:CDS | 40.0% | |
TATAGTGCCAGATTCCAATC+AGG | - | chr1.4:40442891-40442910 | None:intergenic | 40.0% | |
TATCAATCCATTGTGGAACG+AGG | + | chr1.4:40441739-40441758 | MS.gene90010:CDS | 40.0% | |
TCTTCCACACTCAAAATCAG+CGG | - | chr1.4:40441800-40441819 | None:intergenic | 40.0% | |
TCTTCTCATACTCCACATGT+GGG | - | chr1.4:40442689-40442708 | None:intergenic | 40.0% | |
TGCAAGTAGGATTCACATGA+GGG | + | chr1.4:40441976-40441995 | MS.gene90010:CDS | 40.0% | |
TTCCAATCAGGAAGAGGTAA+AGG | - | chr1.4:40442879-40442898 | None:intergenic | 40.0% | |
TTCCTTTACCTCTTCCTGAT+TGG | + | chr1.4:40442874-40442893 | MS.gene90010:CDS | 40.0% | |
TTCTTCTCATACTCCACATG+TGG | - | chr1.4:40442690-40442709 | None:intergenic | 40.0% | |
TTGCAAGTAGGATTCACATG+AGG | + | chr1.4:40441975-40441994 | MS.gene90010:CDS | 40.0% | |
TTGCCTTCAAAGGATGTTAC+CGG | + | chr1.4:40441158-40441177 | MS.gene90010:CDS | 40.0% | |
TTGGAATCTGGCACTATAGA+TGG | + | chr1.4:40442893-40442912 | MS.gene90010:CDS | 40.0% | |
TTTGAATGAGGTTCCGAAAC+GGG | + | chr1.4:40441376-40441395 | MS.gene90010:CDS | 40.0% | |
! | ATGAAGCATTTCCAGAAGCT+TGG | + | chr1.4:40441507-40441526 | MS.gene90010:CDS | 40.0% |
! | CCATTTTCTTCACACCACTT+GGG | - | chr1.4:40442444-40442463 | None:intergenic | 40.0% |
! | CTCCTAAGCTTTGGTATTTG+AGG | + | chr1.4:40441597-40441616 | MS.gene90010:CDS | 40.0% |
! | GGAATTGGTGTTCTTGAAGT+TGG | + | chr1.4:40442088-40442107 | MS.gene90010:CDS | 40.0% |
! | GTATAGGTTGGAGGATAGAA+AGG | + | chr1.4:40441430-40441449 | MS.gene90010:CDS | 40.0% |
! | TCAGGTTTTTGCTTTCTCGA+AGG | + | chr1.4:40441268-40441287 | MS.gene90010:CDS | 40.0% |
! | TTAATGCTGGCTGTTTGGAT+GGG | + | chr1.4:40441473-40441492 | MS.gene90010:CDS | 40.0% |
! | TTTTTGCTTTCTCGAAGGAC+CGG | + | chr1.4:40441273-40441292 | MS.gene90010:CDS | 40.0% |
!! | ACAAAGAAGAAGTATTGGGG+AGG | + | chr1.4:40441834-40441853 | MS.gene90010:CDS | 40.0% |
!! | ACCTAGTATTCACTGGTTTG+TGG | - | chr1.4:40441898-40441917 | None:intergenic | 40.0% |
!! | AGAATCATGGGAGTATTGAG+TGG | + | chr1.4:40442727-40442746 | MS.gene90010:CDS | 40.0% |
!! | ATTGAGTGGACTAATTGCTG+CGG | + | chr1.4:40442741-40442760 | MS.gene90010:CDS | 40.0% |
!! | TCATTGATAGCTTTATGCCG+AGG | + | chr1.4:40442221-40442240 | MS.gene90010:CDS | 40.0% |
!!! | TTTACGTTTTGAGACATCCG+AGG | + | chr1.4:40443235-40443254 | MS.gene90010:CDS | 40.0% |
AAAATCAGCGGCTCCTCAAA+TGG | - | chr1.4:40441788-40441807 | None:intergenic | 45.0% | |
AAAGAGACCAAACCCCATCT+TGG | + | chr1.4:40441041-40441060 | MS.gene90010:CDS | 45.0% | |
AACAGAAAATCTTCAGGCGG+TGG | - | chr1.4:40441020-40441039 | None:intergenic | 45.0% | |
ACCTCTTCCTGATTGGAATC+TGG | + | chr1.4:40442881-40442900 | MS.gene90010:CDS | 45.0% | |
AGAAGAGCCACAACTTGGAA+TGG | - | chr1.4:40443207-40443226 | None:intergenic | 45.0% | |
AGCATGCAATCAGTTCTTGC+AGG | - | chr1.4:40443309-40443328 | None:intergenic | 45.0% | |
AGTTGGGATATTGAGTGCTC+AGG | + | chr1.4:40442105-40442124 | MS.gene90010:CDS | 45.0% | |
ATGAGGGTTTGTCTAGAAGG+TGG | + | chr1.4:40441992-40442011 | MS.gene90010:CDS | 45.0% | |
ATTTCCAGAAGCTTGGCACT+CGG | + | chr1.4:40441514-40441533 | MS.gene90010:CDS | 45.0% | |
CACATGAGGGTTTGTCTAGA+AGG | + | chr1.4:40441989-40442008 | MS.gene90010:CDS | 45.0% | |
CCCAAGTGGTGTGAAGAAAA+TGG | + | chr1.4:40442441-40442460 | MS.gene90010:CDS | 45.0% | |
CCTTATGCCGAAGTTAAGCT+CGG | + | chr1.4:40441191-40441210 | MS.gene90010:CDS | 45.0% | |
CTCAACAAGGTCATATGTGC+TGG | - | chr1.4:40441096-40441115 | None:intergenic | 45.0% | |
CTCATCCGAACAATGTCAGA+AGG | - | chr1.4:40443021-40443040 | None:intergenic | 45.0% | |
CTTATGCCGAAGTTAAGCTC+GGG | + | chr1.4:40441192-40441211 | MS.gene90010:CDS | 45.0% | |
GAATCTGGCACTATAGATGG+AGG | + | chr1.4:40442896-40442915 | MS.gene90010:CDS | 45.0% | |
GACTAATTGCTGCGGGAAAA+TGG | + | chr1.4:40442749-40442768 | MS.gene90010:CDS | 45.0% | |
GGACTAGAATCTCTCTTAGC+AGG | + | chr1.4:40441714-40441733 | MS.gene90010:CDS | 45.0% | |
GGAGGATAGAAAGGGTGATA+AGG | + | chr1.4:40441439-40441458 | MS.gene90010:CDS | 45.0% | |
GGATTTGATGTTCGTTGCTG+CGG | + | chr1.4:40441760-40441779 | MS.gene90010:CDS | 45.0% | |
GGCTAAGGATTTGCCTTCAA+AGG | + | chr1.4:40441148-40441167 | MS.gene90010:CDS | 45.0% | |
GGTATTGCATCTGCTCAACA+AGG | - | chr1.4:40441109-40441128 | None:intergenic | 45.0% | |
GGTTAAGGGAGAGTTAATGC+TGG | + | chr1.4:40441460-40441479 | MS.gene90010:CDS | 45.0% | |
GTGAAGAACTAGGAGTGGAT+AGG | - | chr1.4:40442422-40442441 | None:intergenic | 45.0% | |
GTGGAGTATGAGAAGAAGCA+AGG | + | chr1.4:40442693-40442712 | MS.gene90010:CDS | 45.0% | |
GTTCCGTCATAAGCTTCCAT+CGG | + | chr1.4:40443257-40443276 | MS.gene90010:CDS | 45.0% | |
GTTGGGATATTGAGTGCTCA+GGG | + | chr1.4:40442106-40442125 | MS.gene90010:CDS | 45.0% | |
GTTGTGAAGGACGACTTCAT+TGG | + | chr1.4:40441338-40441357 | MS.gene90010:CDS | 45.0% | |
TAGCGAAATATGGGCAGAAG+TGG | + | chr1.4:40442182-40442201 | MS.gene90010:CDS | 45.0% | |
TAGTGCATCTTTGGCAACAG+AGG | - | chr1.4:40442535-40442554 | None:intergenic | 45.0% | |
TCAACTACCTCCTTTCTCAG+CGG | - | chr1.4:40442646-40442665 | None:intergenic | 45.0% | |
TCCAGATTTCCAGAGCTGTT+TGG | - | chr1.4:40442071-40442090 | None:intergenic | 45.0% | |
TCCTCCAACCTATACCATTG+CGG | - | chr1.4:40441425-40441444 | None:intergenic | 45.0% | |
TGTGACTCCATTCCAAGTTG+TGG | + | chr1.4:40443197-40443216 | MS.gene90010:CDS | 45.0% | |
TGTGAGGGTTGTTAAGGCTA+AGG | + | chr1.4:40441133-40441152 | MS.gene90010:CDS | 45.0% | |
! | AAGAAATTAAGCGGCACCGA+TGG | - | chr1.4:40443276-40443295 | None:intergenic | 45.0% |
! | ACAAACAGTGCTGTTGCTCT+TGG | - | chr1.4:40443144-40443163 | None:intergenic | 45.0% |
! | AGATTTTTCCCCCTCCAAGA+TGG | - | chr1.4:40441058-40441077 | None:intergenic | 45.0% |
! | ATTTTTCCCCCTCCAAGATG+GGG | - | chr1.4:40441056-40441075 | None:intergenic | 45.0% |
! | CCCATTTTCTTCACACCACT+TGG | - | chr1.4:40442445-40442464 | None:intergenic | 45.0% |
! | CTGGAGGTGCAAAAGATTCA+AGG | + | chr1.4:40442338-40442357 | MS.gene90010:CDS | 45.0% |
! | GACTTAGAAGCATAGCTGGT+AGG | + | chr1.4:40443049-40443068 | MS.gene90010:CDS | 45.0% |
! | GAGAGTTAATGCTGGCTGTT+TGG | + | chr1.4:40441468-40441487 | MS.gene90010:CDS | 45.0% |
! | GATCGACTTAGAAGCATAGC+TGG | + | chr1.4:40443045-40443064 | MS.gene90010:CDS | 45.0% |
! | GATTTTTCCCCCTCCAAGAT+GGG | - | chr1.4:40441057-40441076 | None:intergenic | 45.0% |
! | GTTAATGCTGGCTGTTTGGA+TGG | + | chr1.4:40441472-40441491 | MS.gene90010:CDS | 45.0% |
! | TGCCGCTTAATTTCTTCAGG+AGG | + | chr1.4:40443280-40443299 | MS.gene90010:CDS | 45.0% |
!! | CAGCTCTGGAAATCTGGAAT+TGG | + | chr1.4:40442073-40442092 | MS.gene90010:CDS | 45.0% |
!! | GAAGGCTATTTTGGGGAATC+AGG | + | chr1.4:40441685-40441704 | MS.gene90010:CDS | 45.0% |
!! | GCAGGAGTATCAATCCATTG+TGG | + | chr1.4:40441732-40441751 | MS.gene90010:CDS | 45.0% |
!! | TTGAGTGGACTAATTGCTGC+GGG | + | chr1.4:40442742-40442761 | MS.gene90010:CDS | 45.0% |
!! | TTGATAGCTTTATGCCGAGG+TGG | + | chr1.4:40442224-40442243 | MS.gene90010:CDS | 45.0% |
!! | TTGATGTTGGTTCCCACATG+TGG | + | chr1.4:40442674-40442693 | MS.gene90010:CDS | 45.0% |
!! | TTTTGGGGAATCAGGCATTG+AGG | + | chr1.4:40441693-40441712 | MS.gene90010:CDS | 45.0% |
ACCCTCCTAACATGGACACT+CGG | + | chr1.4:40442926-40442945 | MS.gene90010:CDS | 50.0% | |
ACGACTTCATTGGTCGTGTG+TGG | + | chr1.4:40441348-40441367 | MS.gene90010:CDS | 50.0% | |
AGACCAAACCCCATCTTGGA+GGG | + | chr1.4:40441045-40441064 | MS.gene90010:CDS | 50.0% | |
AGCTGGTAGGATACAGACTG+TGG | + | chr1.4:40443062-40443081 | MS.gene90010:CDS | 50.0% | |
ATGTCAGAAGGCCGTGAAGT+CGG | - | chr1.4:40443009-40443028 | None:intergenic | 50.0% | |
CAAACTGTCGAGCTGGCTAA+CGG | - | chr1.4:40442572-40442591 | None:intergenic | 50.0% | |
CAAGTTGTGGCTCTTCTGAC+CGG | + | chr1.4:40443210-40443229 | MS.gene90010:CDS | 50.0% | |
CACCACTTGGGTGAAGAACT+AGG | - | chr1.4:40442432-40442451 | None:intergenic | 50.0% | |
CACGGCCTTCTGACATTGTT+CGG | + | chr1.4:40443013-40443032 | MS.gene90010:CDS | 50.0% | |
CCGAGCTTAACTTCGGCATA+AGG | - | chr1.4:40441194-40441213 | None:intergenic | 50.0% | |
CTGCCGGTAACATCCTTTGA+AGG | - | chr1.4:40441164-40441183 | None:intergenic | 50.0% | |
CTTGGAGGGGGAAAAATCTC+TGG | + | chr1.4:40441059-40441078 | MS.gene90010:CDS | 50.0% | |
CTTGGGTGAAGAACTAGGAG+TGG | - | chr1.4:40442427-40442446 | None:intergenic | 50.0% | |
GCCAGATTCCAATCAGGAAG+AGG | - | chr1.4:40442885-40442904 | None:intergenic | 50.0% | |
GGCATAAGGATCACAACTGC+CGG | - | chr1.4:40441180-40441199 | None:intergenic | 50.0% | |
GGTAGGATACAGACTGTGGT+TGG | + | chr1.4:40443066-40443085 | MS.gene90010:CDS | 50.0% | |
GTTGGCGACTTAGCTACTCA+AGG | + | chr1.4:40443084-40443103 | MS.gene90010:CDS | 50.0% | |
TCGACACATTCCCGACTTCA+CGG | + | chr1.4:40442995-40443014 | MS.gene90010:CDS | 50.0% | |
TTAGCCAGCTCGACAGTTTG+AGG | + | chr1.4:40442572-40442591 | MS.gene90010:CDS | 50.0% | |
TTGCATGGTCCTGACAAAGC+TGG | + | chr1.4:40442319-40442338 | MS.gene90010:CDS | 50.0% | |
! | ATCGGTTCCACTAACAGTCG+CGG | - | chr1.4:40441543-40441562 | None:intergenic | 50.0% |
! | CTCCTAGTTCTTCACCCAAG+TGG | + | chr1.4:40442427-40442446 | MS.gene90010:CDS | 50.0% |
! | GCACCGATGGAAGCTTATGA+CGG | - | chr1.4:40443263-40443282 | None:intergenic | 50.0% |
! | GGAAGCTTATGACGGAACCT+CGG | - | chr1.4:40443255-40443274 | None:intergenic | 50.0% |
! | GGCAGAAGTGGATTCGAACA+AGG | + | chr1.4:40442194-40442213 | MS.gene90010:CDS | 50.0% |
! | TTTGCACCTCCAGCTTTGTC+AGG | - | chr1.4:40442331-40442350 | None:intergenic | 50.0% |
!! | CGGTGCCGCTTAATTTCTTC+AGG | + | chr1.4:40443277-40443296 | MS.gene90010:CDS | 50.0% |
!! | GCCAAACAGCTCTGGAAATC+TGG | + | chr1.4:40442067-40442086 | MS.gene90010:CDS | 50.0% |
!! | TCACGCTGATTCAGCTCATC+CGG | + | chr1.4:40442954-40442973 | MS.gene90010:CDS | 50.0% |
!! | TCCATGTTAGGAGGGTGTCT+TGG | - | chr1.4:40442922-40442941 | None:intergenic | 50.0% |
ACCAAACCCCATCTTGGAGG+GGG | + | chr1.4:40441047-40441066 | MS.gene90010:CDS | 55.0% | |
ACTACCTCCTTTCTCAGCGG+TGG | - | chr1.4:40442643-40442662 | None:intergenic | 55.0% | |
AGCCGAGTGTCCATGTTAGG+AGG | - | chr1.4:40442931-40442950 | None:intergenic | 55.0% | |
ATAGTCCTTTGGCGCCGCAA+TGG | + | chr1.4:40441408-40441427 | MS.gene90010:CDS | 55.0% | |
CACAGTAACCTCCAACACCG+AGG | - | chr1.4:40441306-40441325 | None:intergenic | 55.0% | |
CAGCAGTGATCTTCGCCCAA+CGG | + | chr1.4:40442045-40442064 | MS.gene90010:CDS | 55.0% | |
CATGGTCCTGACAAAGCTGG+AGG | + | chr1.4:40442322-40442341 | MS.gene90010:CDS | 55.0% | |
CGGTCAGAAGAGCCACAACT+TGG | - | chr1.4:40443212-40443231 | None:intergenic | 55.0% | |
CGTTGCTGCGGAACCATTTG+AGG | + | chr1.4:40441772-40441791 | MS.gene90010:CDS | 55.0% | |
CTATACCATTGCGGCGCCAA+AGG | - | chr1.4:40441416-40441435 | None:intergenic | 55.0% | |
CTATCTGGGGGAACCCGTTT+CGG | - | chr1.4:40441392-40441411 | None:intergenic | 55.0% | |
CTTTGGCGCCGCAATGGTAT+AGG | + | chr1.4:40441414-40441433 | MS.gene90010:CDS | 55.0% | |
GACCAAACCCCATCTTGGAG+GGG | + | chr1.4:40441046-40441065 | MS.gene90010:CDS | 55.0% | |
GAGACCAAACCCCATCTTGG+AGG | + | chr1.4:40441044-40441063 | MS.gene90010:CDS | 55.0% | |
GAGAGCCGAGTGTCCATGTT+AGG | - | chr1.4:40442934-40442953 | None:intergenic | 55.0% | |
GATGCCTCAAACTGTCGAGC+TGG | - | chr1.4:40442579-40442598 | None:intergenic | 55.0% | |
GCCAAGACACCCTCCTAACA+TGG | + | chr1.4:40442918-40442937 | MS.gene90010:CDS | 55.0% | |
GCCGAGTGTCCATGTTAGGA+GGG | - | chr1.4:40442930-40442949 | None:intergenic | 55.0% | |
GGCTGTTTGGATGGGTACAC+AGG | + | chr1.4:40441481-40441500 | MS.gene90010:CDS | 55.0% | |
GGTTCCCCCAGATAGTCCTT+TGG | + | chr1.4:40441397-40441416 | MS.gene90010:CDS | 55.0% | |
TCCAGAGCTGTTTGGCCGTT+GGG | - | chr1.4:40442063-40442082 | None:intergenic | 55.0% | |
TCGAGCTGGCTAACGGTCAA+CGG | - | chr1.4:40442565-40442584 | None:intergenic | 55.0% | |
TGTCAGAAGGCCGTGAAGTC+GGG | - | chr1.4:40443008-40443027 | None:intergenic | 55.0% | |
TTCCAGAGCTGTTTGGCCGT+TGG | - | chr1.4:40442064-40442083 | None:intergenic | 55.0% | |
! | GCCGCAATGGTATAGGTTGG+AGG | + | chr1.4:40441421-40441440 | MS.gene90010:CDS | 55.0% |
! | TTTCTCGAAGGACCGGCTTC+AGG | + | chr1.4:40441280-40441299 | MS.gene90010:CDS | 55.0% |
!!! | GGAGCCGCTGATTTTGAGTG+TGG | + | chr1.4:40441793-40441812 | MS.gene90010:CDS | 55.0% |
CGAGCTGGCTAACGGTCAAC+GGG | - | chr1.4:40442564-40442583 | None:intergenic | 60.0% | |
CGGCGCCAAAGGACTATCTG+GGG | - | chr1.4:40441405-40441424 | None:intergenic | 60.0% | |
GCATCCGAGTGCCAAGCTTC+TGG | - | chr1.4:40441521-40441540 | None:intergenic | 60.0% | |
GCGGCGCCAAAGGACTATCT+GGG | - | chr1.4:40441406-40441425 | None:intergenic | 60.0% | |
GGCGCCAAAGGACTATCTGG+GGG | - | chr1.4:40441404-40441423 | None:intergenic | 60.0% | |
GGCGCCGCAATGGTATAGGT+TGG | + | chr1.4:40441418-40441437 | MS.gene90010:CDS | 60.0% | |
GGCTGCAGTCTTTGCTGAGC+TGG | + | chr1.4:40443112-40443131 | MS.gene90010:CDS | 60.0% | |
TCCCCCTCCAAGATGGGGTT+TGG | - | chr1.4:40441051-40441070 | None:intergenic | 60.0% | |
TCGGATGCCGCGACTGTTAG+TGG | + | chr1.4:40441533-40441552 | MS.gene90010:CDS | 60.0% | |
TGAGCCACCGCTGAGAAAGG+AGG | + | chr1.4:40442636-40442655 | MS.gene90010:CDS | 60.0% | |
TGCGGCGCCAAAGGACTATC+TGG | - | chr1.4:40441407-40441426 | None:intergenic | 60.0% | |
CCAACACCGAGGCCTGAAGC+CGG | - | chr1.4:40441295-40441314 | None:intergenic | 65.0% | |
CGCTGAGCCACCGCTGAGAA+AGG | + | chr1.4:40442633-40442652 | MS.gene90010:CDS | 65.0% | |
GCCCAACGGCCAAACAGCTC+TGG | + | chr1.4:40442059-40442078 | MS.gene90010:CDS | 65.0% | |
! | GAAGGACCGGCTTCAGGCCT+CGG | + | chr1.4:40441286-40441305 | MS.gene90010:CDS | 65.0% |
!! | GCTTCAGGCCTCGGTGTTGG+AGG | + | chr1.4:40441295-40441314 | MS.gene90010:CDS | 65.0% |
! | CCGGCTTCAGGCCTCGGTGT+TGG | + | chr1.4:40441292-40441311 | MS.gene90010:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 40441008 | 40443332 | 40441008 | ID=MS.gene90010 |
chr1.4 | mRNA | 40441008 | 40443332 | 40441008 | ID=MS.gene90010.t1;Parent=MS.gene90010 |
chr1.4 | exon | 40441008 | 40443332 | 40441008 | ID=MS.gene90010.t1.exon1;Parent=MS.gene90010.t1 |
chr1.4 | CDS | 40441008 | 40443332 | 40441008 | ID=cds.MS.gene90010.t1;Parent=MS.gene90010.t1 |
Gene Sequence |
Protein sequence |