AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90010.t1 MTR_0305s0020 99.742 774 2 0 1 774 1 774 0.0 1603
MS.gene90010.t1 MTR_7g092770 93.299 776 49 3 1 774 1 775 0.0 1515
MS.gene90010.t1 MTR_4g066150 82.581 775 129 4 1 774 1 770 0.0 1331
MS.gene90010.t1 MTR_3g027150 68.608 790 225 8 7 774 34 822 0.0 1155
MS.gene90010.t1 MTR_4g023460 71.561 756 209 5 24 774 388 1142 0.0 1152
MS.gene90010.t1 MTR_5g010390 68.726 777 233 4 6 774 233 1007 0.0 1147
MS.gene90010.t1 MTR_0291s0010 67.342 790 239 8 3 774 9 797 0.0 1132
MS.gene90010.t1 MTR_4g033215 65.891 774 252 8 8 774 276 1044 0.0 1062
MS.gene90010.t1 MTR_8g031270 60.256 780 292 7 6 774 231 1003 0.0 999
MS.gene90010.t1 MTR_7g076900 59.264 788 291 9 8 774 235 1013 0.0 971
MS.gene90010.t1 MTR_4g057675 58.471 785 303 11 2 774 10 783 0.0 891
MS.gene90010.t1 MTR_4g071870 56.178 785 287 12 2 774 10 749 0.0 858
MS.gene90010.t1 MTR_4g107850 53.351 776 318 14 18 774 288 1038 0.0 806
MS.gene90010.t1 MTR_6g027540 52.294 763 317 13 32 774 274 1009 0.0 783
MS.gene90010.t1 MTR_6g028050 48.231 763 357 13 30 774 284 1026 0.0 736
MS.gene90010.t1 MTR_1g015540 48.590 780 369 13 12 774 9 773 0.0 697
MS.gene90010.t1 MTR_5g096980 41.026 780 424 12 8 774 7 763 0.0 593
MS.gene90010.t1 MTR_4g023250 67.692 130 40 1 644 773 1 128 6.31e-54 182
MS.gene90010.t1 MTR_4g023230 50.000 122 46 1 561 682 49 155 2.78e-32 123
MS.gene90010.t1 MTR_4g023390 50.962 104 29 1 647 750 16 97 3.49e-25 100
MS.gene90010.t1 MTR_4g023240 66.667 60 20 0 495 554 10 69 1.67e-20 86.3
MS.gene90010.t1 MTR_7g052280 53.165 79 12 3 248 325 1 55 2.66e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90010.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene90010.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene90010.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene90010.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene90010.t1 AT1G51570 88.531 776 87 2 1 774 1 776 0.0 1442
MS.gene90010.t1 AT5G12970 81.419 775 137 4 1 774 1 769 0.0 1312
MS.gene90010.t1 AT5G06850 68.662 785 228 8 7 774 11 794 0.0 1156
MS.gene90010.t1 AT4G11610 67.224 778 242 5 6 774 238 1011 0.0 1127
MS.gene90010.t1 AT4G11610 67.224 778 242 5 6 774 234 1007 0.0 1127
MS.gene90010.t1 AT4G11610 67.224 778 242 5 6 774 101 874 0.0 1127
MS.gene90010.t1 AT5G48060 65.897 780 252 8 7 774 259 1036 0.0 1103
MS.gene90010.t1 AT1G22610 65.949 790 248 9 1 774 245 1029 0.0 1077
MS.gene90010.t1 AT4G00700 59.079 782 305 6 6 774 227 1006 0.0 966
MS.gene90010.t1 AT4G00700 59.079 782 305 6 6 774 227 1006 0.0 966
MS.gene90010.t1 AT3G61300 58.869 778 291 13 4 774 217 972 0.0 944
MS.gene90010.t1 AT1G04150 58.354 790 288 14 8 774 241 1012 0.0 926
MS.gene90010.t1 AT4G20080 58.161 772 305 11 9 774 15 774 0.0 920
MS.gene90010.t1 AT1G74720 52.506 798 341 13 2 774 297 1081 0.0 823
MS.gene90010.t1 AT3G03680 52.734 768 314 15 32 774 274 1017 0.0 782
MS.gene90010.t1 AT5G17980 48.810 756 356 12 30 774 314 1049 0.0 749
MS.gene90010.t1 AT5G03435 40.927 777 402 25 7 768 6 740 4.04e-168 503
MS.gene90010.t1 AT3G61720 38.985 808 435 21 7 774 6 795 3.03e-167 503
MS.gene90010.t1 AT5G03435 43.154 577 293 17 7 574 6 556 1.13e-140 426
MS.gene90010.t1 AT5G44760 50.750 400 150 9 8 400 5 364 1.52e-122 376
MS.gene90010.t1 AT5G44760 36.496 137 38 1 540 676 364 451 7.02e-20 94.0
MS.gene90010.t1 AT1G03370 28.980 245 155 11 41 281 3 232 1.53e-12 71.6
MS.gene90010.t1 AT1G03370 28.980 245 155 11 41 281 3 232 1.67e-12 72.0

Find 213 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTCCTTTGCAGTTTA+TGG 0.091860 1.4:+40441859 MS.gene90010:CDS
TGAATCAGAACTGTTGTAAT+TGG 0.188345 1.4:-40442799 None:intergenic
TCATATCTTGTTCATAATAT+TGG 0.200473 1.4:+40442819 MS.gene90010:CDS
TGCGGCGCCAAAGGACTATC+TGG 0.234328 1.4:-40441404 None:intergenic
GCTTATTGTGTAGCGAAATA+TGG 0.253558 1.4:+40442172 MS.gene90010:CDS
GACTAATTGCTGCGGGAAAA+TGG 0.273762 1.4:+40442749 MS.gene90010:CDS
CCCAAGTGGTGTGAAGAAAA+TGG 0.290205 1.4:+40442441 MS.gene90010:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 1.4:+40441597 MS.gene90010:CDS
CGGTGCCGCTTAATTTCTTC+AGG 0.299166 1.4:+40443277 MS.gene90010:CDS
GCCAAACAGCTCTGGAAATC+TGG 0.301858 1.4:+40442067 MS.gene90010:CDS
CACGGCCTTCTGACATTGTT+CGG 0.307253 1.4:+40443013 MS.gene90010:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.311177 1.4:+40442006 MS.gene90010:CDS
ACCTCTTCCTGATTGGAATC+TGG 0.317038 1.4:+40442881 MS.gene90010:CDS
GCATCCGAGTGCCAAGCTTC+TGG 0.322766 1.4:-40441518 None:intergenic
CACATGAGGGTTTGTCTAGA+AGG 0.326790 1.4:+40441989 MS.gene90010:CDS
TAGAAAGGGTGATAAGGTTA+AGG 0.328443 1.4:+40441445 MS.gene90010:CDS
CCCAATACTTCTTCTTTGTT+CGG 0.334931 1.4:-40441830 None:intergenic
TTTCTCGAAGGACCGGCTTC+AGG 0.344206 1.4:+40441280 MS.gene90010:CDS
GAAGGACCGGCTTCAGGCCT+CGG 0.355700 1.4:+40441286 MS.gene90010:CDS
TCCAGAGCTGTTTGGCCGTT+GGG 0.357398 1.4:-40442060 None:intergenic
CCGAACAAAGAAGAAGTATT+GGG 0.371136 1.4:+40441830 MS.gene90010:CDS
TTCCTTTACCTCTTCCTGAT+TGG 0.374360 1.4:+40442874 MS.gene90010:CDS
CCGATGCTCTTGCAAATATT+AGG 0.375111 1.4:+40441558 MS.gene90010:CDS
CCTTTATGTGAGGGTTGTTA+AGG 0.377947 1.4:+40441127 MS.gene90010:CDS
GTTAAGCTCGGGAACTATAA+AGG 0.383225 1.4:+40441203 MS.gene90010:CDS
CTTTGGCGCCGCAATGGTAT+AGG 0.384411 1.4:+40441414 MS.gene90010:CDS
TTTATTTATCTCCTAAGCTT+TGG 0.384714 1.4:+40441588 MS.gene90010:CDS
TTTGCACCTCCAGCTTTGTC+AGG 0.385021 1.4:-40442328 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 1.4:+40441598 MS.gene90010:CDS
GGCTAATTTCTTCAGAATCA+TGG 0.388398 1.4:+40442714 MS.gene90010:CDS
TTGGAATCTGGCACTATAGA+TGG 0.393642 1.4:+40442893 MS.gene90010:CDS
CCGAGCTTAACTTCGGCATA+AGG 0.395229 1.4:-40441191 None:intergenic
CAGCTCTGGAAATCTGGAAT+TGG 0.397726 1.4:+40442073 MS.gene90010:CDS
GAGAGCCGAGTGTCCATGTT+AGG 0.399650 1.4:-40442931 None:intergenic
GGTTCGATCAAATTTGCAAC+TGG 0.404361 1.4:+40442770 MS.gene90010:CDS
GAGAGTTAATGCTGGCTGTT+TGG 0.410843 1.4:+40441468 MS.gene90010:CDS
ACAAACAGTGCTGTTGCTCT+TGG 0.411446 1.4:-40443141 None:intergenic
CCTTAACAACCCTCACATAA+AGG 0.412120 1.4:-40441127 None:intergenic
CGTTGCTGCGGAACCATTTG+AGG 0.412932 1.4:+40441772 MS.gene90010:CDS
GCCCAACGGCCAAACAGCTC+TGG 0.415222 1.4:+40442059 MS.gene90010:CDS
GGAATTGGTGTTCTTGAAGT+TGG 0.415516 1.4:+40442088 MS.gene90010:CDS
TTTGAATGAGGTTCCGAAAC+GGG 0.416032 1.4:+40441376 MS.gene90010:CDS
TCGGATGCCGCGACTGTTAG+TGG 0.420415 1.4:+40441533 MS.gene90010:CDS
GGGTGTATATAGTGCATCTT+TGG 0.421466 1.4:-40442541 None:intergenic
TTGCCTTCAAAGGATGTTAC+CGG 0.422723 1.4:+40441158 MS.gene90010:CDS
TCTTTCAACAGAAAATCTTC+AGG 0.424219 1.4:-40441023 None:intergenic
AACCAATCCTGAATGGAATC+AGG 0.430195 1.4:+40441250 MS.gene90010:CDS
AGACTTACAGCCAACTGATA+AGG 0.432910 1.4:+40441640 MS.gene90010:CDS
GGCTAAGGATTTGCCTTCAA+AGG 0.432921 1.4:+40441148 MS.gene90010:CDS
TGTCAGAAGGCCGTGAAGTC+GGG 0.434203 1.4:-40443005 None:intergenic
GGCTGCAGTCTTTGCTGAGC+TGG 0.435790 1.4:+40443112 MS.gene90010:CDS
AAAATCAGCGGCTCCTCAAA+TGG 0.439031 1.4:-40441785 None:intergenic
TTCCAGAGCTGTTTGGCCGT+TGG 0.439868 1.4:-40442061 None:intergenic
GTATAGGTTGGAGGATAGAA+AGG 0.443612 1.4:+40441430 MS.gene90010:CDS
CGCTGAGCCACCGCTGAGAA+AGG 0.446361 1.4:+40442633 MS.gene90010:CDS
TCCAGATTTCCAGAGCTGTT+TGG 0.447417 1.4:-40442068 None:intergenic
AAGAAATTAAATTTGCAAGT+AGG 0.449686 1.4:+40441963 MS.gene90010:CDS
AGTTGGGATATTGAGTGCTC+AGG 0.452833 1.4:+40442105 MS.gene90010:CDS
CTTATTGTGTAGCGAAATAT+GGG 0.456005 1.4:+40442173 MS.gene90010:CDS
GACTTACAGCCAACTGATAA+GGG 0.456275 1.4:+40441641 MS.gene90010:CDS
GAATTGGTGTTCTTGAAGTT+GGG 0.456895 1.4:+40442089 MS.gene90010:CDS
CCGGCTTCAGGCCTCGGTGT+TGG 0.457897 1.4:+40441292 MS.gene90010:CDS
GCTTCAGGCCTCGGTGTTGG+AGG 0.458158 1.4:+40441295 MS.gene90010:CDS
AGAAAGGGTGATAAGGTTAA+GGG 0.464699 1.4:+40441446 MS.gene90010:CDS
TCGACACATTCCCGACTTCA+CGG 0.468689 1.4:+40442995 MS.gene90010:CDS
CAAGTTGTGGCTCTTCTGAC+CGG 0.473110 1.4:+40443210 MS.gene90010:CDS
CCTTGCACTGTGATTACAAT+TGG 0.473689 1.4:+40442277 MS.gene90010:CDS
AACTGATAAGGGTAGATATC+CGG 0.474666 1.4:+40441652 MS.gene90010:CDS
CGAGCTGGCTAACGGTCAAC+GGG 0.475727 1.4:-40442561 None:intergenic
AACTCTTCATCAAGTTCGTC+CGG 0.476174 1.4:-40442973 None:intergenic
ATTCAAGGATTGGTAAGGTA+AGG 0.476487 1.4:+40442353 MS.gene90010:CDS
GAAAATGGGTGAAATTCAAT+TGG 0.477497 1.4:+40442456 MS.gene90010:CDS
ACTGTTGGTAAGATAAGTTC+AGG 0.477704 1.4:-40442850 None:intergenic
TGTGAGGGTTGTTAAGGCTA+AGG 0.478542 1.4:+40441133 MS.gene90010:CDS
GGAGGATAGAAAGGGTGATA+AGG 0.479059 1.4:+40441439 MS.gene90010:CDS
GCTAATTTCTTCAGAATCAT+GGG 0.479725 1.4:+40442715 MS.gene90010:CDS
ACCTAGTATTCACTGGTTTG+TGG 0.480851 1.4:-40441895 None:intergenic
AACCTGATTCCATTCAGGAT+TGG 0.483996 1.4:-40441252 None:intergenic
GGCTGTTTGGATGGGTACAC+AGG 0.485124 1.4:+40441481 MS.gene90010:CDS
CTGGAGGTGCAAAAGATTCA+AGG 0.487820 1.4:+40442338 MS.gene90010:CDS
ATGAAGCATTTCCAGAAGCT+TGG 0.489119 1.4:+40441507 MS.gene90010:CDS
TTTGAGGGTTAATGTGATTG+AGG 0.490505 1.4:+40441613 MS.gene90010:CDS
GCGGCGCCAAAGGACTATCT+GGG 0.491089 1.4:-40441403 None:intergenic
GTTGTGAAGGACGACTTCAT+TGG 0.491403 1.4:+40441338 MS.gene90010:CDS
ACCACAAACCAGTGAATACT+AGG 0.491540 1.4:+40441894 MS.gene90010:CDS
GTTGAGTATATGCTTGATGT+TGG 0.492238 1.4:+40442661 MS.gene90010:CDS
GTTAATGCTGGCTGTTTGGA+TGG 0.493096 1.4:+40441472 MS.gene90010:CDS
AAAGAGACCAAACCCCATCT+TGG 0.497107 1.4:+40441041 MS.gene90010:CDS
TTCCAATCAGGAAGAGGTAA+AGG 0.498405 1.4:-40442876 None:intergenic
CTCAACAAGGTCATATGTGC+TGG 0.498939 1.4:-40441093 None:intergenic
TCCATGTTAGGAGGGTGTCT+TGG 0.501157 1.4:-40442919 None:intergenic
TCCGAACAAAGAAGAAGTAT+TGG 0.503767 1.4:+40441829 MS.gene90010:CDS
CGGTCAGAAGAGCCACAACT+TGG 0.507292 1.4:-40443209 None:intergenic
GGACTAGAATCTCTCTTAGC+AGG 0.511755 1.4:+40441714 MS.gene90010:CDS
TCACGCTGATTCAGCTCATC+CGG 0.512085 1.4:+40442954 MS.gene90010:CDS
TATAGTGCCAGATTCCAATC+AGG 0.513655 1.4:-40442888 None:intergenic
TTAGCCAGCTCGACAGTTTG+AGG 0.514684 1.4:+40442572 MS.gene90010:CDS
ATGTCAGAAGGCCGTGAAGT+CGG 0.514758 1.4:-40443006 None:intergenic
AACAGAAAATCTTCAGGCGG+TGG 0.514836 1.4:-40441017 None:intergenic
AGAAGAAAACCAATCCTGAA+TGG 0.515488 1.4:+40441243 MS.gene90010:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 1.4:-40441599 None:intergenic
GATCGACTTAGAAGCATAGC+TGG 0.518904 1.4:+40443045 MS.gene90010:CDS
GGTGCAAAAGATTCAAGGAT+TGG 0.520817 1.4:+40442343 MS.gene90010:CDS
TCGAGCTGGCTAACGGTCAA+CGG 0.520943 1.4:-40442562 None:intergenic
ATGTCTCAAAACGTAAATTC+CGG 0.524528 1.4:-40443229 None:intergenic
GTTGGGATATTGAGTGCTCA+GGG 0.525396 1.4:+40442106 MS.gene90010:CDS
CACCACTTGGGTGAAGAACT+AGG 0.526449 1.4:-40442429 None:intergenic
TTAAACCACCTAGTATTCAC+TGG 0.527121 1.4:-40441902 None:intergenic
AGCCGAGTGTCCATGTTAGG+AGG 0.527424 1.4:-40442928 None:intergenic
TTGCATGGTCCTGACAAAGC+TGG 0.527750 1.4:+40442319 MS.gene90010:CDS
AGCATGCAATCAGTTCTTGC+AGG 0.532832 1.4:-40443306 None:intergenic
TTCCTTTGCAGTTTATGGAT+AGG 0.533408 1.4:+40441864 MS.gene90010:CDS
CCAAGTGGTGTGAAGAAAAT+GGG 0.533679 1.4:+40442442 MS.gene90010:CDS
ATTTGAATGAGGTTCCGAAA+CGG 0.535448 1.4:+40441375 MS.gene90010:CDS
TGCAAGTAGGATTCACATGA+GGG 0.537596 1.4:+40441976 MS.gene90010:CDS
TTCTTCTCATACTCCACATG+TGG 0.540825 1.4:-40442687 None:intergenic
CTATACCATTGCGGCGCCAA+AGG 0.545107 1.4:-40441413 None:intergenic
AAGAAATTAAGCGGCACCGA+TGG 0.545420 1.4:-40443273 None:intergenic
AGAAGAGCCACAACTTGGAA+TGG 0.547838 1.4:-40443204 None:intergenic
CTGCCGGTAACATCCTTTGA+AGG 0.549728 1.4:-40441161 None:intergenic
GGCGCCGCAATGGTATAGGT+TGG 0.550817 1.4:+40441418 MS.gene90010:CDS
ATAGTTCCCGAGCTTAACTT+CGG 0.551532 1.4:-40441198 None:intergenic
GTGAAGAACTAGGAGTGGAT+AGG 0.551635 1.4:-40442419 None:intergenic
GCCAAGACACCCTCCTAACA+TGG 0.551812 1.4:+40442918 MS.gene90010:CDS
GGCATAAGGATCACAACTGC+CGG 0.556517 1.4:-40441177 None:intergenic
TGTGTGGTTTGATTTGAATG+AGG 0.557487 1.4:+40441364 MS.gene90010:CDS
TGCCGCTTAATTTCTTCAGG+AGG 0.557905 1.4:+40443280 MS.gene90010:CDS
GGATTTGATGTTCGTTGCTG+CGG 0.557925 1.4:+40441760 MS.gene90010:CDS
TAGCGAAATATGGGCAGAAG+TGG 0.558621 1.4:+40442182 MS.gene90010:CDS
AAAAGATTCAAGGATTGGTA+AGG 0.560457 1.4:+40442348 MS.gene90010:CDS
CCTAATATTTGCAAGAGCAT+CGG 0.563372 1.4:-40441558 None:intergenic
AGACCAAACCCCATCTTGGA+GGG 0.563491 1.4:+40441045 MS.gene90010:CDS
CCAACACCGAGGCCTGAAGC+CGG 0.564103 1.4:-40441292 None:intergenic
GAGACCAAACCCCATCTTGG+AGG 0.564193 1.4:+40441044 MS.gene90010:CDS
ACGACTTCATTGGTCGTGTG+TGG 0.564266 1.4:+40441348 MS.gene90010:CDS
TTTGATAATTGTCATTTGCA+TGG 0.564967 1.4:+40442304 MS.gene90010:CDS
ATAGTCCTTTGGCGCCGCAA+TGG 0.565983 1.4:+40441408 MS.gene90010:CDS
CTCCTATCCATAAACTGCAA+AGG 0.566217 1.4:-40441866 None:intergenic
GATGCCTCAAACTGTCGAGC+TGG 0.566280 1.4:-40442576 None:intergenic
ATTTCCAGAAGCTTGGCACT+CGG 0.566792 1.4:+40441514 MS.gene90010:CDS
AAAACATATCATTGTAGAAG+GGG 0.567643 1.4:+40441931 MS.gene90010:CDS
CCTTATGCCGAAGTTAAGCT+CGG 0.570182 1.4:+40441191 MS.gene90010:CDS
GGTGGAATGAGCAATATACT+TGG 0.572552 1.4:+40442242 MS.gene90010:CDS
GCCAGATTCCAATCAGGAAG+AGG 0.575406 1.4:-40442882 None:intergenic
GGATATCTACCCTTATCAGT+TGG 0.576446 1.4:-40441650 None:intergenic
TATAGGTTGGAGGATAGAAA+GGG 0.576864 1.4:+40441431 MS.gene90010:CDS
TTGAGTGGACTAATTGCTGC+GGG 0.577897 1.4:+40442742 MS.gene90010:CDS
CTCCTAGTTCTTCACCCAAG+TGG 0.579462 1.4:+40442427 MS.gene90010:CDS
CAAACTGTCGAGCTGGCTAA+CGG 0.580833 1.4:-40442569 None:intergenic
GCCGCAATGGTATAGGTTGG+AGG 0.582372 1.4:+40441421 MS.gene90010:CDS
ACTTAGCTACTCAAGGAGAA+AGG 0.584009 1.4:+40443091 MS.gene90010:CDS
TGTGACTCCATTCCAAGTTG+TGG 0.584358 1.4:+40443197 MS.gene90010:CDS
ATCAAATCCTCGTTCCACAA+TGG 0.587304 1.4:-40441746 None:intergenic
ACCAAACCCCATCTTGGAGG+GGG 0.588344 1.4:+40441047 MS.gene90010:CDS
TTGCAAGTAGGATTCACATG+AGG 0.591241 1.4:+40441975 MS.gene90010:CDS
GGAAGCTTATGACGGAACCT+CGG 0.592244 1.4:-40443252 None:intergenic
GGCAGAAGTGGATTCGAACA+AGG 0.592797 1.4:+40442194 MS.gene90010:CDS
TTGATGTTGGTTCCCACATG+TGG 0.601847 1.4:+40442674 MS.gene90010:CDS
AAGAGGTAAAGGAAAACTGT+TGG 0.606111 1.4:-40442865 None:intergenic
TTAATGCTGGCTGTTTGGAT+GGG 0.606592 1.4:+40441473 MS.gene90010:CDS
CCAATTGTAATCACAGTGCA+AGG 0.607117 1.4:-40442277 None:intergenic
ACTACCTCCTTTCTCAGCGG+TGG 0.608379 1.4:-40442640 None:intergenic
ACCCTCCTAACATGGACACT+CGG 0.608381 1.4:+40442926 MS.gene90010:CDS
GGTAGGATACAGACTGTGGT+TGG 0.612469 1.4:+40443066 MS.gene90010:CDS
GATGCAATACCTTTATGTGA+GGG 0.612976 1.4:+40441118 MS.gene90010:CDS
GACCAAACCCCATCTTGGAG+GGG 0.614269 1.4:+40441046 MS.gene90010:CDS
CGGCGCCAAAGGACTATCTG+GGG 0.614676 1.4:-40441402 None:intergenic
CTCATCCGAACAATGTCAGA+AGG 0.615248 1.4:-40443018 None:intergenic
GGAGGTTACTGTGAAAGATA+AGG 0.615500 1.4:+40441313 MS.gene90010:CDS
CTTATGCCGAAGTTAAGCTC+GGG 0.616554 1.4:+40441192 MS.gene90010:CDS
TTCAACAGAAAATCTTCAGG+CGG 0.617196 1.4:-40441020 None:intergenic
GGTTAAGGGAGAGTTAATGC+TGG 0.618376 1.4:+40441460 MS.gene90010:CDS
AGAATCATGGGAGTATTGAG+TGG 0.619315 1.4:+40442727 MS.gene90010:CDS
AGATGCAATACCTTTATGTG+AGG 0.619566 1.4:+40441117 MS.gene90010:CDS
CAGCAGTGATCTTCGCCCAA+CGG 0.622948 1.4:+40442045 MS.gene90010:CDS
GCCGAGTGTCCATGTTAGGA+GGG 0.626241 1.4:-40442927 None:intergenic
TTTGAGCAGCGAAAATGCAG+AGG 0.627054 1.4:+40440994 None:intergenic
ATGAGGGTTTGTCTAGAAGG+TGG 0.627125 1.4:+40441992 MS.gene90010:CDS
GTGGAATGAGCAATATACTT+GGG 0.627653 1.4:+40442243 MS.gene90010:CDS
CTTGGGTGAAGAACTAGGAG+TGG 0.630605 1.4:-40442424 None:intergenic
TGAGCCACCGCTGAGAAAGG+AGG 0.630758 1.4:+40442636 MS.gene90010:CDS
GACTTAGAAGCATAGCTGGT+AGG 0.632636 1.4:+40443049 MS.gene90010:CDS
GGTATTGCATCTGCTCAACA+AGG 0.633340 1.4:-40441106 None:intergenic
TAGTGCATCTTTGGCAACAG+AGG 0.634644 1.4:-40442532 None:intergenic
GTTCCGTCATAAGCTTCCAT+CGG 0.642868 1.4:+40443257 MS.gene90010:CDS
TTGATAGCTTTATGCCGAGG+TGG 0.644610 1.4:+40442224 MS.gene90010:CDS
GAATGAGCAATATACTTGGG+AGG 0.645094 1.4:+40442246 MS.gene90010:CDS
GAAAGATAAGGATGTTGTGA+AGG 0.645624 1.4:+40441325 MS.gene90010:CDS
GTTGGCGACTTAGCTACTCA+AGG 0.648005 1.4:+40443084 MS.gene90010:CDS
GCAGGAGTATCAATCCATTG+TGG 0.649222 1.4:+40441732 MS.gene90010:CDS
GTGGAGTATGAGAAGAAGCA+AGG 0.650662 1.4:+40442693 MS.gene90010:CDS
ATCGGTTCCACTAACAGTCG+CGG 0.651678 1.4:-40441540 None:intergenic
AGCCTCCTGAAGAAATTAAG+CGG 0.651985 1.4:-40443282 None:intergenic
GTGAAATTCAATTGGCTGTG+AGG 0.654400 1.4:+40442464 MS.gene90010:CDS
GCACCGATGGAAGCTTATGA+CGG 0.656076 1.4:-40443260 None:intergenic
GAATCTGGCACTATAGATGG+AGG 0.658514 1.4:+40442896 MS.gene90010:CDS
GGAACTATAAAGGAACTACT+CGG 0.658774 1.4:+40441213 MS.gene90010:CDS
ATTGAGTGGACTAATTGCTG+CGG 0.661101 1.4:+40442741 MS.gene90010:CDS
CTACTCAGATAGTTTCAATG+AGG 0.663957 1.4:+40442602 MS.gene90010:CDS
TCATTGATAGCTTTATGCCG+AGG 0.666881 1.4:+40442221 MS.gene90010:CDS
TATCAATCCATTGTGGAACG+AGG 0.672925 1.4:+40441739 MS.gene90010:CDS
TCCTCCAACCTATACCATTG+CGG 0.673444 1.4:-40441422 None:intergenic
GGCGCCAAAGGACTATCTGG+GGG 0.676642 1.4:-40441401 None:intergenic
CGAACAAAGAAGAAGTATTG+GGG 0.685152 1.4:+40441831 MS.gene90010:CDS
TCTTCCACACTCAAAATCAG+CGG 0.687134 1.4:-40441797 None:intergenic
TCTTCTCATACTCCACATGT+GGG 0.689277 1.4:-40442686 None:intergenic
AGCTGGTAGGATACAGACTG+TGG 0.703110 1.4:+40443062 MS.gene90010:CDS
ACAAAGAAGAAGTATTGGGG+AGG 0.704686 1.4:+40441834 MS.gene90010:CDS
CATGGTCCTGACAAAGCTGG+AGG 0.704809 1.4:+40442322 MS.gene90010:CDS
GTATATTGCTCATTCCACCT+CGG 0.716433 1.4:-40442238 None:intergenic
TCAACTACCTCCTTTCTCAG+CGG 0.739237 1.4:-40442643 None:intergenic
CACAGTAACCTCCAACACCG+AGG 0.741552 1.4:-40441303 None:intergenic
ACAAACCAGTGAATACTAGG+TGG 0.765072 1.4:+40441897 MS.gene90010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATATCATTGTAGAA+GGG + chr1.4:40441930-40441949 MS.gene90010:CDS 20.0%
!! AAGAAATTAAATTTGCAAGT+AGG + chr1.4:40441963-40441982 MS.gene90010:CDS 20.0%
!! TCATATCTTGTTCATAATAT+TGG + chr1.4:40442819-40442838 MS.gene90010:CDS 20.0%
! AAAACATATCATTGTAGAAG+GGG + chr1.4:40441931-40441950 MS.gene90010:CDS 25.0%
! AATGAAAAATAAAGATGGGA+GGG + chr1.4:40442138-40442157 MS.gene90010:CDS 25.0%
! ATGCCAATGAAAAATAAAGA+TGG + chr1.4:40442133-40442152 MS.gene90010:CDS 25.0%
! GAAAAACATATCATTGTAGA+AGG + chr1.4:40441929-40441948 MS.gene90010:CDS 25.0%
! TGCCAATGAAAAATAAAGAT+GGG + chr1.4:40442134-40442153 MS.gene90010:CDS 25.0%
! TTTATTTATCTCCTAAGCTT+TGG + chr1.4:40441588-40441607 MS.gene90010:CDS 25.0%
!! TTTGATAATTGTCATTTGCA+TGG + chr1.4:40442304-40442323 MS.gene90010:CDS 25.0%
ATGAAAAATAAAGATGGGAG+GGG + chr1.4:40442139-40442158 MS.gene90010:CDS 30.0%
ATGTCTCAAAACGTAAATTC+CGG - chr1.4:40443232-40443251 None:intergenic 30.0%
CAATGAAAAATAAAGATGGG+AGG + chr1.4:40442137-40442156 MS.gene90010:CDS 30.0%
CTTATTGTGTAGCGAAATAT+GGG + chr1.4:40442173-40442192 MS.gene90010:CDS 30.0%
GAAAATGGGTGAAATTCAAT+TGG + chr1.4:40442456-40442475 MS.gene90010:CDS 30.0%
GCTAATTTCTTCAGAATCAT+GGG + chr1.4:40442715-40442734 MS.gene90010:CDS 30.0%
TCTTTCAACAGAAAATCTTC+AGG - chr1.4:40441026-40441045 None:intergenic 30.0%
TGAATCAGAACTGTTGTAAT+TGG - chr1.4:40442802-40442821 None:intergenic 30.0%
! AAAAGATTCAAGGATTGGTA+AGG + chr1.4:40442348-40442367 MS.gene90010:CDS 30.0%
! AGTTTTTGTGAAGGCTATTT+TGG + chr1.4:40441676-40441695 MS.gene90010:CDS 30.0%
!! GTTTTTGTGAAGGCTATTTT+GGG + chr1.4:40441677-40441696 MS.gene90010:CDS 30.0%
!! TTTTTGTGAAGGCTATTTTG+GGG + chr1.4:40441678-40441697 MS.gene90010:CDS 30.0%
!!! CTCCCATCTTTATTTTTCAT+TGG - chr1.4:40442139-40442158 None:intergenic 30.0%
AACTGATAAGGGTAGATATC+CGG + chr1.4:40441652-40441671 MS.gene90010:CDS 35.0%
AAGAGGTAAAGGAAAACTGT+TGG - chr1.4:40442868-40442887 None:intergenic 35.0%
AGAAAGGGTGATAAGGTTAA+GGG + chr1.4:40441446-40441465 MS.gene90010:CDS 35.0%
AGAAGAAAACCAATCCTGAA+TGG + chr1.4:40441243-40441262 MS.gene90010:CDS 35.0%
AGATGCAATACCTTTATGTG+AGG + chr1.4:40441117-40441136 MS.gene90010:CDS 35.0%
ATAGCCTTCACAAAAACTTC+CGG - chr1.4:40441674-40441693 None:intergenic 35.0%
ATTTGAATGAGGTTCCGAAA+CGG + chr1.4:40441375-40441394 MS.gene90010:CDS 35.0%
CCCAATACTTCTTCTTTGTT+CGG - chr1.4:40441833-40441852 None:intergenic 35.0%
CTACTCAGATAGTTTCAATG+AGG + chr1.4:40442602-40442621 MS.gene90010:CDS 35.0%
GAAAGATAAGGATGTTGTGA+AGG + chr1.4:40441325-40441344 MS.gene90010:CDS 35.0%
GATGCAATACCTTTATGTGA+GGG + chr1.4:40441118-40441137 MS.gene90010:CDS 35.0%
GCTTATTGTGTAGCGAAATA+TGG + chr1.4:40442172-40442191 MS.gene90010:CDS 35.0%
GGAACTATAAAGGAACTACT+CGG + chr1.4:40441213-40441232 MS.gene90010:CDS 35.0%
GGCTAATTTCTTCAGAATCA+TGG + chr1.4:40442714-40442733 MS.gene90010:CDS 35.0%
GTGGAATGAGCAATATACTT+GGG + chr1.4:40442243-40442262 MS.gene90010:CDS 35.0%
GTTGAGTATATGCTTGATGT+TGG + chr1.4:40442661-40442680 MS.gene90010:CDS 35.0%
TAGAAAGGGTGATAAGGTTA+AGG + chr1.4:40441445-40441464 MS.gene90010:CDS 35.0%
TGAAAAATAAAGATGGGAGG+GGG + chr1.4:40442140-40442159 MS.gene90010:CDS 35.0%
TGCAATTCCTTTGCAGTTTA+TGG + chr1.4:40441859-40441878 MS.gene90010:CDS 35.0%
TTAAACCACCTAGTATTCAC+TGG - chr1.4:40441905-40441924 None:intergenic 35.0%
TTCAACAGAAAATCTTCAGG+CGG - chr1.4:40441023-40441042 None:intergenic 35.0%
TTCCTTTGCAGTTTATGGAT+AGG + chr1.4:40441864-40441883 MS.gene90010:CDS 35.0%
TTTGAGGGTTAATGTGATTG+AGG + chr1.4:40441613-40441632 MS.gene90010:CDS 35.0%
! ACTGTTGGTAAGATAAGTTC+AGG - chr1.4:40442853-40442872 None:intergenic 35.0%
! AGAAGGTGGTTATCATGTTT+TGG + chr1.4:40442006-40442025 MS.gene90010:CDS 35.0%
! ATATCCGGAAGTTTTTGTGA+AGG + chr1.4:40441667-40441686 MS.gene90010:CDS 35.0%
! ATTCAAGGATTGGTAAGGTA+AGG + chr1.4:40442353-40442372 MS.gene90010:CDS 35.0%
! CCTAATATTTGCAAGAGCAT+CGG - chr1.4:40441561-40441580 None:intergenic 35.0%
! GAATTGGTGTTCTTGAAGTT+GGG + chr1.4:40442089-40442108 MS.gene90010:CDS 35.0%
! TATAGGTTGGAGGATAGAAA+GGG + chr1.4:40441431-40441450 MS.gene90010:CDS 35.0%
! TCCGAACAAAGAAGAAGTAT+TGG + chr1.4:40441829-40441848 MS.gene90010:CDS 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG + chr1.4:40441598-40441617 MS.gene90010:CDS 35.0%
!! CCGAACAAAGAAGAAGTATT+GGG + chr1.4:40441830-40441849 MS.gene90010:CDS 35.0%
!! CGAACAAAGAAGAAGTATTG+GGG + chr1.4:40441831-40441850 MS.gene90010:CDS 35.0%
!! TGTGTGGTTTGATTTGAATG+AGG + chr1.4:40441364-40441383 MS.gene90010:CDS 35.0%
AACCAATCCTGAATGGAATC+AGG + chr1.4:40441250-40441269 MS.gene90010:CDS 40.0%
AACCTGATTCCATTCAGGAT+TGG - chr1.4:40441255-40441274 None:intergenic 40.0%
AACTCTTCATCAAGTTCGTC+CGG - chr1.4:40442976-40442995 None:intergenic 40.0%
ACAAACCAGTGAATACTAGG+TGG + chr1.4:40441897-40441916 MS.gene90010:CDS 40.0%
ACCACAAACCAGTGAATACT+AGG + chr1.4:40441894-40441913 MS.gene90010:CDS 40.0%
ACCCTCAAATACCAAAGCTT+AGG - chr1.4:40441602-40441621 None:intergenic 40.0%
ACTTAGCTACTCAAGGAGAA+AGG + chr1.4:40443091-40443110 MS.gene90010:CDS 40.0%
AGACTTACAGCCAACTGATA+AGG + chr1.4:40441640-40441659 MS.gene90010:CDS 40.0%
AGCCTCCTGAAGAAATTAAG+CGG - chr1.4:40443285-40443304 None:intergenic 40.0%
ATAGTTCCCGAGCTTAACTT+CGG - chr1.4:40441201-40441220 None:intergenic 40.0%
ATCAAATCCTCGTTCCACAA+TGG - chr1.4:40441749-40441768 None:intergenic 40.0%
CCAAGTGGTGTGAAGAAAAT+GGG + chr1.4:40442442-40442461 MS.gene90010:CDS 40.0%
CCAATTGTAATCACAGTGCA+AGG - chr1.4:40442280-40442299 None:intergenic 40.0%
CCGATGCTCTTGCAAATATT+AGG + chr1.4:40441558-40441577 MS.gene90010:CDS 40.0%
CCTTAACAACCCTCACATAA+AGG - chr1.4:40441130-40441149 None:intergenic 40.0%
CCTTGCACTGTGATTACAAT+TGG + chr1.4:40442277-40442296 MS.gene90010:CDS 40.0%
CCTTTATGTGAGGGTTGTTA+AGG + chr1.4:40441127-40441146 MS.gene90010:CDS 40.0%
CTCCTATCCATAAACTGCAA+AGG - chr1.4:40441869-40441888 None:intergenic 40.0%
GAATGAGCAATATACTTGGG+AGG + chr1.4:40442246-40442265 MS.gene90010:CDS 40.0%
GACTTACAGCCAACTGATAA+GGG + chr1.4:40441641-40441660 MS.gene90010:CDS 40.0%
GCAAAAACCTGATTCCATTC+AGG - chr1.4:40441260-40441279 None:intergenic 40.0%
GGAGGTTACTGTGAAAGATA+AGG + chr1.4:40441313-40441332 MS.gene90010:CDS 40.0%
GGATATCTACCCTTATCAGT+TGG - chr1.4:40441653-40441672 None:intergenic 40.0%
GGGTGTATATAGTGCATCTT+TGG - chr1.4:40442544-40442563 None:intergenic 40.0%
GGTGCAAAAGATTCAAGGAT+TGG + chr1.4:40442343-40442362 MS.gene90010:CDS 40.0%
GGTGGAATGAGCAATATACT+TGG + chr1.4:40442242-40442261 MS.gene90010:CDS 40.0%
GGTTCGATCAAATTTGCAAC+TGG + chr1.4:40442770-40442789 MS.gene90010:CDS 40.0%
GTATATTGCTCATTCCACCT+CGG - chr1.4:40442241-40442260 None:intergenic 40.0%
GTGAAATTCAATTGGCTGTG+AGG + chr1.4:40442464-40442483 MS.gene90010:CDS 40.0%
GTTAAGCTCGGGAACTATAA+AGG + chr1.4:40441203-40441222 MS.gene90010:CDS 40.0%
TATAGTGCCAGATTCCAATC+AGG - chr1.4:40442891-40442910 None:intergenic 40.0%
TATCAATCCATTGTGGAACG+AGG + chr1.4:40441739-40441758 MS.gene90010:CDS 40.0%
TCTTCCACACTCAAAATCAG+CGG - chr1.4:40441800-40441819 None:intergenic 40.0%
TCTTCTCATACTCCACATGT+GGG - chr1.4:40442689-40442708 None:intergenic 40.0%
TGCAAGTAGGATTCACATGA+GGG + chr1.4:40441976-40441995 MS.gene90010:CDS 40.0%
TTCCAATCAGGAAGAGGTAA+AGG - chr1.4:40442879-40442898 None:intergenic 40.0%
TTCCTTTACCTCTTCCTGAT+TGG + chr1.4:40442874-40442893 MS.gene90010:CDS 40.0%
TTCTTCTCATACTCCACATG+TGG - chr1.4:40442690-40442709 None:intergenic 40.0%
TTGCAAGTAGGATTCACATG+AGG + chr1.4:40441975-40441994 MS.gene90010:CDS 40.0%
TTGCCTTCAAAGGATGTTAC+CGG + chr1.4:40441158-40441177 MS.gene90010:CDS 40.0%
TTGGAATCTGGCACTATAGA+TGG + chr1.4:40442893-40442912 MS.gene90010:CDS 40.0%
TTTGAATGAGGTTCCGAAAC+GGG + chr1.4:40441376-40441395 MS.gene90010:CDS 40.0%
! ATGAAGCATTTCCAGAAGCT+TGG + chr1.4:40441507-40441526 MS.gene90010:CDS 40.0%
! CCATTTTCTTCACACCACTT+GGG - chr1.4:40442444-40442463 None:intergenic 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG + chr1.4:40441597-40441616 MS.gene90010:CDS 40.0%
! GGAATTGGTGTTCTTGAAGT+TGG + chr1.4:40442088-40442107 MS.gene90010:CDS 40.0%
! GTATAGGTTGGAGGATAGAA+AGG + chr1.4:40441430-40441449 MS.gene90010:CDS 40.0%
! TCAGGTTTTTGCTTTCTCGA+AGG + chr1.4:40441268-40441287 MS.gene90010:CDS 40.0%
! TTAATGCTGGCTGTTTGGAT+GGG + chr1.4:40441473-40441492 MS.gene90010:CDS 40.0%
! TTTTTGCTTTCTCGAAGGAC+CGG + chr1.4:40441273-40441292 MS.gene90010:CDS 40.0%
!! ACAAAGAAGAAGTATTGGGG+AGG + chr1.4:40441834-40441853 MS.gene90010:CDS 40.0%
!! ACCTAGTATTCACTGGTTTG+TGG - chr1.4:40441898-40441917 None:intergenic 40.0%
!! AGAATCATGGGAGTATTGAG+TGG + chr1.4:40442727-40442746 MS.gene90010:CDS 40.0%
!! ATTGAGTGGACTAATTGCTG+CGG + chr1.4:40442741-40442760 MS.gene90010:CDS 40.0%
!! TCATTGATAGCTTTATGCCG+AGG + chr1.4:40442221-40442240 MS.gene90010:CDS 40.0%
!!! TTTACGTTTTGAGACATCCG+AGG + chr1.4:40443235-40443254 MS.gene90010:CDS 40.0%
AAAATCAGCGGCTCCTCAAA+TGG - chr1.4:40441788-40441807 None:intergenic 45.0%
AAAGAGACCAAACCCCATCT+TGG + chr1.4:40441041-40441060 MS.gene90010:CDS 45.0%
AACAGAAAATCTTCAGGCGG+TGG - chr1.4:40441020-40441039 None:intergenic 45.0%
ACCTCTTCCTGATTGGAATC+TGG + chr1.4:40442881-40442900 MS.gene90010:CDS 45.0%
AGAAGAGCCACAACTTGGAA+TGG - chr1.4:40443207-40443226 None:intergenic 45.0%
AGCATGCAATCAGTTCTTGC+AGG - chr1.4:40443309-40443328 None:intergenic 45.0%
AGTTGGGATATTGAGTGCTC+AGG + chr1.4:40442105-40442124 MS.gene90010:CDS 45.0%
ATGAGGGTTTGTCTAGAAGG+TGG + chr1.4:40441992-40442011 MS.gene90010:CDS 45.0%
ATTTCCAGAAGCTTGGCACT+CGG + chr1.4:40441514-40441533 MS.gene90010:CDS 45.0%
CACATGAGGGTTTGTCTAGA+AGG + chr1.4:40441989-40442008 MS.gene90010:CDS 45.0%
CCCAAGTGGTGTGAAGAAAA+TGG + chr1.4:40442441-40442460 MS.gene90010:CDS 45.0%
CCTTATGCCGAAGTTAAGCT+CGG + chr1.4:40441191-40441210 MS.gene90010:CDS 45.0%
CTCAACAAGGTCATATGTGC+TGG - chr1.4:40441096-40441115 None:intergenic 45.0%
CTCATCCGAACAATGTCAGA+AGG - chr1.4:40443021-40443040 None:intergenic 45.0%
CTTATGCCGAAGTTAAGCTC+GGG + chr1.4:40441192-40441211 MS.gene90010:CDS 45.0%
GAATCTGGCACTATAGATGG+AGG + chr1.4:40442896-40442915 MS.gene90010:CDS 45.0%
GACTAATTGCTGCGGGAAAA+TGG + chr1.4:40442749-40442768 MS.gene90010:CDS 45.0%
GGACTAGAATCTCTCTTAGC+AGG + chr1.4:40441714-40441733 MS.gene90010:CDS 45.0%
GGAGGATAGAAAGGGTGATA+AGG + chr1.4:40441439-40441458 MS.gene90010:CDS 45.0%
GGATTTGATGTTCGTTGCTG+CGG + chr1.4:40441760-40441779 MS.gene90010:CDS 45.0%
GGCTAAGGATTTGCCTTCAA+AGG + chr1.4:40441148-40441167 MS.gene90010:CDS 45.0%
GGTATTGCATCTGCTCAACA+AGG - chr1.4:40441109-40441128 None:intergenic 45.0%
GGTTAAGGGAGAGTTAATGC+TGG + chr1.4:40441460-40441479 MS.gene90010:CDS 45.0%
GTGAAGAACTAGGAGTGGAT+AGG - chr1.4:40442422-40442441 None:intergenic 45.0%
GTGGAGTATGAGAAGAAGCA+AGG + chr1.4:40442693-40442712 MS.gene90010:CDS 45.0%
GTTCCGTCATAAGCTTCCAT+CGG + chr1.4:40443257-40443276 MS.gene90010:CDS 45.0%
GTTGGGATATTGAGTGCTCA+GGG + chr1.4:40442106-40442125 MS.gene90010:CDS 45.0%
GTTGTGAAGGACGACTTCAT+TGG + chr1.4:40441338-40441357 MS.gene90010:CDS 45.0%
TAGCGAAATATGGGCAGAAG+TGG + chr1.4:40442182-40442201 MS.gene90010:CDS 45.0%
TAGTGCATCTTTGGCAACAG+AGG - chr1.4:40442535-40442554 None:intergenic 45.0%
TCAACTACCTCCTTTCTCAG+CGG - chr1.4:40442646-40442665 None:intergenic 45.0%
TCCAGATTTCCAGAGCTGTT+TGG - chr1.4:40442071-40442090 None:intergenic 45.0%
TCCTCCAACCTATACCATTG+CGG - chr1.4:40441425-40441444 None:intergenic 45.0%
TGTGACTCCATTCCAAGTTG+TGG + chr1.4:40443197-40443216 MS.gene90010:CDS 45.0%
TGTGAGGGTTGTTAAGGCTA+AGG + chr1.4:40441133-40441152 MS.gene90010:CDS 45.0%
! AAGAAATTAAGCGGCACCGA+TGG - chr1.4:40443276-40443295 None:intergenic 45.0%
! ACAAACAGTGCTGTTGCTCT+TGG - chr1.4:40443144-40443163 None:intergenic 45.0%
! AGATTTTTCCCCCTCCAAGA+TGG - chr1.4:40441058-40441077 None:intergenic 45.0%
! ATTTTTCCCCCTCCAAGATG+GGG - chr1.4:40441056-40441075 None:intergenic 45.0%
! CCCATTTTCTTCACACCACT+TGG - chr1.4:40442445-40442464 None:intergenic 45.0%
! CTGGAGGTGCAAAAGATTCA+AGG + chr1.4:40442338-40442357 MS.gene90010:CDS 45.0%
! GACTTAGAAGCATAGCTGGT+AGG + chr1.4:40443049-40443068 MS.gene90010:CDS 45.0%
! GAGAGTTAATGCTGGCTGTT+TGG + chr1.4:40441468-40441487 MS.gene90010:CDS 45.0%
! GATCGACTTAGAAGCATAGC+TGG + chr1.4:40443045-40443064 MS.gene90010:CDS 45.0%
! GATTTTTCCCCCTCCAAGAT+GGG - chr1.4:40441057-40441076 None:intergenic 45.0%
! GTTAATGCTGGCTGTTTGGA+TGG + chr1.4:40441472-40441491 MS.gene90010:CDS 45.0%
! TGCCGCTTAATTTCTTCAGG+AGG + chr1.4:40443280-40443299 MS.gene90010:CDS 45.0%
!! CAGCTCTGGAAATCTGGAAT+TGG + chr1.4:40442073-40442092 MS.gene90010:CDS 45.0%
!! GAAGGCTATTTTGGGGAATC+AGG + chr1.4:40441685-40441704 MS.gene90010:CDS 45.0%
!! GCAGGAGTATCAATCCATTG+TGG + chr1.4:40441732-40441751 MS.gene90010:CDS 45.0%
!! TTGAGTGGACTAATTGCTGC+GGG + chr1.4:40442742-40442761 MS.gene90010:CDS 45.0%
!! TTGATAGCTTTATGCCGAGG+TGG + chr1.4:40442224-40442243 MS.gene90010:CDS 45.0%
!! TTGATGTTGGTTCCCACATG+TGG + chr1.4:40442674-40442693 MS.gene90010:CDS 45.0%
!! TTTTGGGGAATCAGGCATTG+AGG + chr1.4:40441693-40441712 MS.gene90010:CDS 45.0%
ACCCTCCTAACATGGACACT+CGG + chr1.4:40442926-40442945 MS.gene90010:CDS 50.0%
ACGACTTCATTGGTCGTGTG+TGG + chr1.4:40441348-40441367 MS.gene90010:CDS 50.0%
AGACCAAACCCCATCTTGGA+GGG + chr1.4:40441045-40441064 MS.gene90010:CDS 50.0%
AGCTGGTAGGATACAGACTG+TGG + chr1.4:40443062-40443081 MS.gene90010:CDS 50.0%
ATGTCAGAAGGCCGTGAAGT+CGG - chr1.4:40443009-40443028 None:intergenic 50.0%
CAAACTGTCGAGCTGGCTAA+CGG - chr1.4:40442572-40442591 None:intergenic 50.0%
CAAGTTGTGGCTCTTCTGAC+CGG + chr1.4:40443210-40443229 MS.gene90010:CDS 50.0%
CACCACTTGGGTGAAGAACT+AGG - chr1.4:40442432-40442451 None:intergenic 50.0%
CACGGCCTTCTGACATTGTT+CGG + chr1.4:40443013-40443032 MS.gene90010:CDS 50.0%
CCGAGCTTAACTTCGGCATA+AGG - chr1.4:40441194-40441213 None:intergenic 50.0%
CTGCCGGTAACATCCTTTGA+AGG - chr1.4:40441164-40441183 None:intergenic 50.0%
CTTGGAGGGGGAAAAATCTC+TGG + chr1.4:40441059-40441078 MS.gene90010:CDS 50.0%
CTTGGGTGAAGAACTAGGAG+TGG - chr1.4:40442427-40442446 None:intergenic 50.0%
GCCAGATTCCAATCAGGAAG+AGG - chr1.4:40442885-40442904 None:intergenic 50.0%
GGCATAAGGATCACAACTGC+CGG - chr1.4:40441180-40441199 None:intergenic 50.0%
GGTAGGATACAGACTGTGGT+TGG + chr1.4:40443066-40443085 MS.gene90010:CDS 50.0%
GTTGGCGACTTAGCTACTCA+AGG + chr1.4:40443084-40443103 MS.gene90010:CDS 50.0%
TCGACACATTCCCGACTTCA+CGG + chr1.4:40442995-40443014 MS.gene90010:CDS 50.0%
TTAGCCAGCTCGACAGTTTG+AGG + chr1.4:40442572-40442591 MS.gene90010:CDS 50.0%
TTGCATGGTCCTGACAAAGC+TGG + chr1.4:40442319-40442338 MS.gene90010:CDS 50.0%
! ATCGGTTCCACTAACAGTCG+CGG - chr1.4:40441543-40441562 None:intergenic 50.0%
! CTCCTAGTTCTTCACCCAAG+TGG + chr1.4:40442427-40442446 MS.gene90010:CDS 50.0%
! GCACCGATGGAAGCTTATGA+CGG - chr1.4:40443263-40443282 None:intergenic 50.0%
! GGAAGCTTATGACGGAACCT+CGG - chr1.4:40443255-40443274 None:intergenic 50.0%
! GGCAGAAGTGGATTCGAACA+AGG + chr1.4:40442194-40442213 MS.gene90010:CDS 50.0%
! TTTGCACCTCCAGCTTTGTC+AGG - chr1.4:40442331-40442350 None:intergenic 50.0%
!! CGGTGCCGCTTAATTTCTTC+AGG + chr1.4:40443277-40443296 MS.gene90010:CDS 50.0%
!! GCCAAACAGCTCTGGAAATC+TGG + chr1.4:40442067-40442086 MS.gene90010:CDS 50.0%
!! TCACGCTGATTCAGCTCATC+CGG + chr1.4:40442954-40442973 MS.gene90010:CDS 50.0%
!! TCCATGTTAGGAGGGTGTCT+TGG - chr1.4:40442922-40442941 None:intergenic 50.0%
ACCAAACCCCATCTTGGAGG+GGG + chr1.4:40441047-40441066 MS.gene90010:CDS 55.0%
ACTACCTCCTTTCTCAGCGG+TGG - chr1.4:40442643-40442662 None:intergenic 55.0%
AGCCGAGTGTCCATGTTAGG+AGG - chr1.4:40442931-40442950 None:intergenic 55.0%
ATAGTCCTTTGGCGCCGCAA+TGG + chr1.4:40441408-40441427 MS.gene90010:CDS 55.0%
CACAGTAACCTCCAACACCG+AGG - chr1.4:40441306-40441325 None:intergenic 55.0%
CAGCAGTGATCTTCGCCCAA+CGG + chr1.4:40442045-40442064 MS.gene90010:CDS 55.0%
CATGGTCCTGACAAAGCTGG+AGG + chr1.4:40442322-40442341 MS.gene90010:CDS 55.0%
CGGTCAGAAGAGCCACAACT+TGG - chr1.4:40443212-40443231 None:intergenic 55.0%
CGTTGCTGCGGAACCATTTG+AGG + chr1.4:40441772-40441791 MS.gene90010:CDS 55.0%
CTATACCATTGCGGCGCCAA+AGG - chr1.4:40441416-40441435 None:intergenic 55.0%
CTATCTGGGGGAACCCGTTT+CGG - chr1.4:40441392-40441411 None:intergenic 55.0%
CTTTGGCGCCGCAATGGTAT+AGG + chr1.4:40441414-40441433 MS.gene90010:CDS 55.0%
GACCAAACCCCATCTTGGAG+GGG + chr1.4:40441046-40441065 MS.gene90010:CDS 55.0%
GAGACCAAACCCCATCTTGG+AGG + chr1.4:40441044-40441063 MS.gene90010:CDS 55.0%
GAGAGCCGAGTGTCCATGTT+AGG - chr1.4:40442934-40442953 None:intergenic 55.0%
GATGCCTCAAACTGTCGAGC+TGG - chr1.4:40442579-40442598 None:intergenic 55.0%
GCCAAGACACCCTCCTAACA+TGG + chr1.4:40442918-40442937 MS.gene90010:CDS 55.0%
GCCGAGTGTCCATGTTAGGA+GGG - chr1.4:40442930-40442949 None:intergenic 55.0%
GGCTGTTTGGATGGGTACAC+AGG + chr1.4:40441481-40441500 MS.gene90010:CDS 55.0%
GGTTCCCCCAGATAGTCCTT+TGG + chr1.4:40441397-40441416 MS.gene90010:CDS 55.0%
TCCAGAGCTGTTTGGCCGTT+GGG - chr1.4:40442063-40442082 None:intergenic 55.0%
TCGAGCTGGCTAACGGTCAA+CGG - chr1.4:40442565-40442584 None:intergenic 55.0%
TGTCAGAAGGCCGTGAAGTC+GGG - chr1.4:40443008-40443027 None:intergenic 55.0%
TTCCAGAGCTGTTTGGCCGT+TGG - chr1.4:40442064-40442083 None:intergenic 55.0%
! GCCGCAATGGTATAGGTTGG+AGG + chr1.4:40441421-40441440 MS.gene90010:CDS 55.0%
! TTTCTCGAAGGACCGGCTTC+AGG + chr1.4:40441280-40441299 MS.gene90010:CDS 55.0%
!!! GGAGCCGCTGATTTTGAGTG+TGG + chr1.4:40441793-40441812 MS.gene90010:CDS 55.0%
CGAGCTGGCTAACGGTCAAC+GGG - chr1.4:40442564-40442583 None:intergenic 60.0%
CGGCGCCAAAGGACTATCTG+GGG - chr1.4:40441405-40441424 None:intergenic 60.0%
GCATCCGAGTGCCAAGCTTC+TGG - chr1.4:40441521-40441540 None:intergenic 60.0%
GCGGCGCCAAAGGACTATCT+GGG - chr1.4:40441406-40441425 None:intergenic 60.0%
GGCGCCAAAGGACTATCTGG+GGG - chr1.4:40441404-40441423 None:intergenic 60.0%
GGCGCCGCAATGGTATAGGT+TGG + chr1.4:40441418-40441437 MS.gene90010:CDS 60.0%
GGCTGCAGTCTTTGCTGAGC+TGG + chr1.4:40443112-40443131 MS.gene90010:CDS 60.0%
TCCCCCTCCAAGATGGGGTT+TGG - chr1.4:40441051-40441070 None:intergenic 60.0%
TCGGATGCCGCGACTGTTAG+TGG + chr1.4:40441533-40441552 MS.gene90010:CDS 60.0%
TGAGCCACCGCTGAGAAAGG+AGG + chr1.4:40442636-40442655 MS.gene90010:CDS 60.0%
TGCGGCGCCAAAGGACTATC+TGG - chr1.4:40441407-40441426 None:intergenic 60.0%
CCAACACCGAGGCCTGAAGC+CGG - chr1.4:40441295-40441314 None:intergenic 65.0%
CGCTGAGCCACCGCTGAGAA+AGG + chr1.4:40442633-40442652 MS.gene90010:CDS 65.0%
GCCCAACGGCCAAACAGCTC+TGG + chr1.4:40442059-40442078 MS.gene90010:CDS 65.0%
! GAAGGACCGGCTTCAGGCCT+CGG + chr1.4:40441286-40441305 MS.gene90010:CDS 65.0%
!! GCTTCAGGCCTCGGTGTTGG+AGG + chr1.4:40441295-40441314 MS.gene90010:CDS 65.0%
! CCGGCTTCAGGCCTCGGTGT+TGG + chr1.4:40441292-40441311 MS.gene90010:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 40441008 40443332 40441008 ID=MS.gene90010
chr1.4 mRNA 40441008 40443332 40441008 ID=MS.gene90010.t1;Parent=MS.gene90010
chr1.4 exon 40441008 40443332 40441008 ID=MS.gene90010.t1.exon1;Parent=MS.gene90010.t1
chr1.4 CDS 40441008 40443332 40441008 ID=cds.MS.gene90010.t1;Parent=MS.gene90010.t1
Gene Sequence

>MS.gene90010

ATGCAGAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACATATGACCTTGTTGAGCAGATGCAATACCTTTATGTGAGGGTTGTTAAGGCTAAGGATTTGCCTTCAAAGGATGTTACCGGCAGTTGTGATCCTTATGCCGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTCGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTCTCGAAGGACCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCGCAATGGTATAGGTTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTAATGCTGGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCGGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTGGGGAATCAGGCATTGAGGACTAGAATCTCTCTTAGCAGGAGTATCAATCCATTGTGGAACGAGGATTTGATGTTCGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGGTGTGCAATTCCTTTGCAGTTTATGGATAGGAGACTCGACCACAAACCAGTGAATACTAGGTGGTTTAATCTTGAAAAACATATCATTGTAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCACATGAGGGTTTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGTTTGATGCCAATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGATTCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATTGCTGCGGGAAAATGGTTCGATCAAATTTGCAACTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTCATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATCTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCTGATTCAGCTCATCCGGACGAACTTGATGAAGAGTTCGACACATTCCCGACTTCACGGCCTTCTGACATTGTTCGGATGAGATATGATCGACTTAGAAGCATAGCTGGTAGGATACAGACTGTGGTTGGCGACTTAGCTACTCAAGGAGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCAAGAGCAACAGCACTGTTTGTGATTTTCTGTTTGCTTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCTCTTCTGACCGGAATTTACGTTTTGAGACATCCGAGGTTCCGTCATAAGCTTCCATCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA

Protein sequence

>MS.gene90010.t1

MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISLSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLLAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML