Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052345.t1 | XP_003607364.1 | 93.3 | 389 | 25 | 1 | 1 | 389 | 1 | 388 | 2.50E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052345.t1 | Q94CJ5 | 76.4 | 276 | 65 | 0 | 114 | 389 | 108 | 383 | 3.1e-119 | 429.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052345.t1 | G7JRM8 | 93.3 | 389 | 25 | 1 | 1 | 389 | 1 | 388 | 1.8e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051850 | MS.gene052345 | 0.842539 | 2.43E-58 | -1.69E-46 |
| MS.gene052345 | MS.gene06117 | 0.830367 | 3.06E-55 | -1.69E-46 |
| MS.gene052345 | MS.gene063817 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene052345 | MS.gene064677 | 0.841945 | 3.49E-58 | -1.69E-46 |
| MS.gene052345 | MS.gene064737 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene052345 | MS.gene067338 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene052345 | MS.gene20056 | 0.800397 | 1.47E-48 | -1.69E-46 |
| MS.gene052345 | MS.gene20202 | 0.833306 | 5.75E-56 | -1.69E-46 |
| MS.gene052345 | MS.gene24867 | 0.839438 | 1.58E-57 | -1.69E-46 |
| MS.gene052345 | MS.gene28989 | 0.908938 | 9.88E-82 | -1.69E-46 |
| MS.gene052345 | MS.gene42329 | 0.833028 | 6.75E-56 | -1.69E-46 |
| MS.gene052345 | MS.gene55836 | 0.832938 | 7.10E-56 | -1.69E-46 |
| MS.gene052345 | MS.gene57578 | 0.841087 | 5.88E-58 | -1.69E-46 |
| MS.gene052345 | MS.gene60750 | 0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene052345 | MS.gene68049 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene052345 | MS.gene70305 | 0.804932 | 1.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052345.t1 | MTR_4g077000 | 97.449 | 392 | 3 | 5 | 1 | 389 | 1 | 388 | 0.0 | 748 |
| MS.gene052345.t1 | MTR_0013s0150 | 72.954 | 281 | 76 | 0 | 109 | 389 | 97 | 377 | 1.67e-153 | 438 |
| MS.gene052345.t1 | MTR_3g033620 | 64.516 | 279 | 97 | 1 | 111 | 389 | 111 | 387 | 7.10e-132 | 384 |
| MS.gene052345.t1 | MTR_3g071970 | 34.828 | 290 | 176 | 5 | 110 | 389 | 430 | 716 | 5.10e-49 | 177 |
| MS.gene052345.t1 | MTR_2g084605 | 31.597 | 288 | 182 | 7 | 110 | 389 | 112 | 392 | 1.60e-34 | 132 |
| MS.gene052345.t1 | MTR_7g064130 | 31.884 | 276 | 171 | 7 | 124 | 389 | 180 | 448 | 4.02e-31 | 123 |
| MS.gene052345.t1 | MTR_7g074090 | 30.472 | 233 | 145 | 4 | 159 | 389 | 90 | 307 | 3.94e-25 | 104 |
| MS.gene052345.t1 | MTR_7g074090 | 30.472 | 233 | 145 | 4 | 159 | 389 | 90 | 307 | 1.72e-24 | 103 |
| MS.gene052345.t1 | MTR_7g074090 | 30.472 | 233 | 145 | 4 | 159 | 389 | 108 | 325 | 3.22e-24 | 103 |
| MS.gene052345.t1 | MTR_7g074070 | 31.633 | 196 | 123 | 3 | 159 | 352 | 101 | 287 | 2.41e-21 | 94.7 |
| MS.gene052345.t1 | MTR_1g045030 | 90.000 | 40 | 3 | 1 | 98 | 137 | 36 | 74 | 3.34e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052345.t1 | AT5G12470 | 76.512 | 281 | 66 | 0 | 109 | 389 | 103 | 383 | 2.33e-164 | 466 |
| MS.gene052345.t1 | AT3G56140 | 35.211 | 284 | 175 | 4 | 114 | 389 | 207 | 489 | 4.06e-53 | 184 |
| MS.gene052345.t1 | AT3G56140 | 35.714 | 280 | 171 | 4 | 118 | 389 | 430 | 708 | 8.50e-52 | 184 |
| MS.gene052345.t1 | AT3G56140 | 35.714 | 280 | 171 | 4 | 118 | 389 | 430 | 708 | 8.50e-52 | 184 |
| MS.gene052345.t1 | AT2G40400 | 34.375 | 288 | 180 | 4 | 110 | 389 | 413 | 699 | 1.72e-51 | 183 |
| MS.gene052345.t1 | AT2G40400 | 34.375 | 288 | 180 | 4 | 110 | 389 | 413 | 699 | 1.72e-51 | 183 |
| MS.gene052345.t1 | AT2G40400 | 34.034 | 238 | 149 | 3 | 110 | 339 | 413 | 650 | 2.09e-38 | 146 |
| MS.gene052345.t1 | AT5G22790 | 30.035 | 283 | 188 | 5 | 114 | 389 | 154 | 433 | 4.46e-32 | 125 |
| MS.gene052345.t1 | AT2G37860 | 29.964 | 277 | 175 | 7 | 124 | 389 | 164 | 432 | 2.74e-29 | 118 |
| MS.gene052345.t1 | AT2G37860 | 29.964 | 277 | 175 | 7 | 124 | 389 | 164 | 432 | 2.74e-29 | 118 |
| MS.gene052345.t1 | AT3G08640 | 29.752 | 242 | 155 | 5 | 150 | 389 | 94 | 322 | 9.05e-22 | 95.5 |
| MS.gene052345.t1 | AT3G08630 | 28.879 | 232 | 144 | 5 | 163 | 389 | 104 | 319 | 2.92e-21 | 94.4 |
| MS.gene052345.t1 | AT2G37860 | 26.984 | 189 | 124 | 4 | 124 | 303 | 164 | 347 | 8.72e-13 | 69.3 |
| MS.gene052345.t1 | AT2G37860 | 26.984 | 189 | 124 | 4 | 124 | 303 | 164 | 347 | 8.72e-13 | 69.3 |
Find 108 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAACCGGCAATACGTATT+TGG | 0.115303 | 4.4:+33566203 | MS.gene052345:CDS |
| GATAGGTACCAAGTTCTTTC+TGG | 0.185122 | 4.4:+33566105 | MS.gene052345:intron |
| CTTCCACAGGTTGCTCTCTC+TGG | 0.204802 | 4.4:+33564612 | MS.gene052345:intron |
| AGCAGCACTGGTAGAAAATA+TGG | 0.239676 | 4.4:-33565759 | None:intergenic |
| TGCAAAGAAGGCTGTTAATA+AGG | 0.245873 | 4.4:+33565709 | MS.gene052345:CDS |
| AAGACCTGGAATGCATTATC+TGG | 0.259642 | 4.4:-33564497 | None:intergenic |
| AATTATTGAACAGAGGCTTT+TGG | 0.323263 | 4.4:+33566128 | MS.gene052345:CDS |
| CGAACCGGCAATACGTATTT+GGG | 0.327044 | 4.4:+33566204 | MS.gene052345:CDS |
| TGGATTATGCACGTTGGATA+GGG | 0.345466 | 4.4:+33566331 | MS.gene052345:CDS |
| TTGTTGTTGTTGGCGCAAGC+GGG | 0.349863 | 4.4:+33562612 | MS.gene052345:CDS |
| CTGCCCAGATAATGCATTCC+AGG | 0.359487 | 4.4:+33564493 | MS.gene052345:CDS |
| GTTACCTTGCACAGCGTAAT+GGG | 0.387864 | 4.4:+33564756 | MS.gene052345:intron |
| TGCTGCTTATGGTGTTTATA+TGG | 0.391910 | 4.4:+33565775 | MS.gene052345:CDS |
| CTTTGCTTTGCTGTTCGAAC+CGG | 0.402782 | 4.4:+33566189 | MS.gene052345:CDS |
| GAGAATGAGAAGAAAGAGAA+TGG | 0.416969 | 4.4:-33562317 | None:intergenic |
| TGAAGCAACCACCGCATAAA+CGG | 0.426527 | 4.4:-33562735 | None:intergenic |
| CAATAATTCCAGAAAGAACT+TGG | 0.431709 | 4.4:-33566113 | None:intergenic |
| TGAACCCAAATACGTATTGC+CGG | 0.437016 | 4.4:-33566208 | None:intergenic |
| GAATGAGGCGTTGTTGTTGT+TGG | 0.453993 | 4.4:+33562602 | MS.gene052345:CDS |
| GTGGATTATGCACGTTGGAT+AGG | 0.462939 | 4.4:+33566330 | MS.gene052345:CDS |
| GGTTACCTTGCACAGCGTAA+TGG | 0.466762 | 4.4:+33564755 | MS.gene052345:intron |
| GAAAGAAGGTACGGCGGAAT+CGG | 0.471592 | 4.4:-33562469 | None:intergenic |
| CCACCACTTGGAGTCAGTGC+AGG | 0.480173 | 4.4:+33564446 | MS.gene052345:CDS |
| TGACTTAGCTTCGGCTATCA+AGG | 0.481342 | 4.4:+33562659 | MS.gene052345:CDS |
| AGTTGGATCTGCTTCGTCAC+TGG | 0.485700 | 4.4:+33564793 | MS.gene052345:CDS |
| TATCAAGGAAGGTAAGATTC+CGG | 0.485810 | 4.4:+33562674 | MS.gene052345:CDS |
| TATTCTTTCTTGCAAAGAGT+TGG | 0.485972 | 4.4:+33564642 | MS.gene052345:CDS |
| GTTGTTGTTGTTGGCGCAAG+CGG | 0.486703 | 4.4:+33562611 | MS.gene052345:CDS |
| GAAGAAAGAGAATGGGAAGA+AGG | 0.488748 | 4.4:-33562309 | None:intergenic |
| GGGAGGGATTTAGGAGTGGA+AGG | 0.490063 | 4.4:-33562339 | None:intergenic |
| AGAATGAGAAGAAAGAGAAT+GGG | 0.491291 | 4.4:-33562316 | None:intergenic |
| ATGCGGTGGTTGCTTCAGTT+TGG | 0.491847 | 4.4:+33562741 | MS.gene052345:CDS |
| TTCGACGGTGGAGATTCATT+CGG | 0.496295 | 4.4:+33562489 | MS.gene052345:CDS |
| CGGTGGTTGCTTCAGTTTGG+TGG | 0.501146 | 4.4:+33562744 | MS.gene052345:CDS |
| GATCTGTGCGGTGGTTGATA+CGG | 0.503940 | 4.4:-33562425 | None:intergenic |
| GAGAAGGAGAAGGAGTGATA+CGG | 0.506494 | 4.4:-33562395 | None:intergenic |
| TGCCGCAATTAATGCAAAGA+AGG | 0.515316 | 4.4:+33565697 | MS.gene052345:CDS |
| GCAGCACTGGTAGAAAATAT+GGG | 0.517884 | 4.4:-33565758 | None:intergenic |
| GGCGCAAGCGGGGAGGTCGT+TGG | 0.524312 | 4.4:+33562623 | MS.gene052345:CDS |
| ATACGGAGACGGAGGGAAAG+TGG | 0.524321 | 4.4:-33562378 | None:intergenic |
| CGGAAAGAAGGAGAAGGAGA+AGG | 0.527272 | 4.4:-33562405 | None:intergenic |
| GAATCTCCACCGTCGAAAGA+AGG | 0.528306 | 4.4:-33562483 | None:intergenic |
| AGTTTATTTACCTGCACCTA+CGG | 0.529483 | 4.4:+33564412 | MS.gene052345:CDS |
| GAAAGAGAATGGGAAGAAGG+AGG | 0.529887 | 4.4:-33562306 | None:intergenic |
| CTAAGAGAAACCGTAGGTGC+AGG | 0.531784 | 4.4:-33564422 | None:intergenic |
| ATGGGAAGAAGGAGGAACGA+AGG | 0.532917 | 4.4:-33562298 | None:intergenic |
| AGAAGGTACGGCGGAATCGG+TGG | 0.534117 | 4.4:-33562466 | None:intergenic |
| GTTGGATTTGAATGCGGCGT+CGG | 0.540654 | 4.4:+33562810 | MS.gene052345:CDS |
| CACCACTTGGAGTCAGTGCA+GGG | 0.544286 | 4.4:+33564447 | MS.gene052345:CDS |
| CACTAAGTACAAGCTTGTGC+TGG | 0.546248 | 4.4:-33566164 | None:intergenic |
| GTACGGCGGAATCGGTGGAA+TGG | 0.550207 | 4.4:-33562461 | None:intergenic |
| TCCGCCGTACCTTCTTTCGA+CGG | 0.557166 | 4.4:+33562474 | MS.gene052345:CDS |
| AGAAGGGAGGGATTTAGGAG+TGG | 0.561658 | 4.4:-33562343 | None:intergenic |
| TGGCAGTTTCTAGCAACCTC+AGG | 0.563504 | 4.4:+33565795 | MS.gene052345:CDS |
| AAAGAGCGGCGGATTGAATG+AGG | 0.564436 | 4.4:+33562587 | MS.gene052345:CDS |
| AGCCTTCTTTGCATTAATTG+CGG | 0.566973 | 4.4:-33565699 | None:intergenic |
| CGGTGGTTGATACGGAAAGA+AGG | 0.568152 | 4.4:-33562417 | None:intergenic |
| AGCTTGTGCTGGTGCAACAA+AGG | 0.568917 | 4.4:-33566153 | None:intergenic |
| ATAAACACCATAAGCAGCAC+TGG | 0.569201 | 4.4:-33565771 | None:intergenic |
| GTTTCTCTTAGACCACCACT+TGG | 0.569402 | 4.4:+33564434 | MS.gene052345:CDS |
| AGACCTGGAATGCATTATCT+GGG | 0.570627 | 4.4:-33564496 | None:intergenic |
| GGAGGACACGGTGGAGATGA+CGG | 0.571833 | 4.4:+33562510 | MS.gene052345:CDS |
| GAGGTCGTTGGAGAGTGTGC+CGG | 0.573713 | 4.4:+33562635 | MS.gene052345:CDS |
| GGACATGGACACGGAGGAGA+CGG | 0.576585 | 4.4:+33562546 | MS.gene052345:CDS |
| TTCCGGCGTCTGTAGTTGAG+AGG | 0.579757 | 4.4:+33562691 | MS.gene052345:CDS |
| TGTTGTTGGCGCAAGCGGGG+AGG | 0.580429 | 4.4:+33562616 | MS.gene052345:CDS |
| GGATTATGCACGTTGGATAG+GGG | 0.580434 | 4.4:+33566332 | MS.gene052345:CDS |
| TGTTGTTGTTGGCGCAAGCG+GGG | 0.580768 | 4.4:+33562613 | MS.gene052345:CDS |
| GAGAAGGAGTGATACGGAGA+CGG | 0.585406 | 4.4:-33562389 | None:intergenic |
| TGTGCCGGCTGACTTAGCTT+CGG | 0.587224 | 4.4:+33562650 | MS.gene052345:CDS |
| GCCGTACCTTCTTTCGACGG+TGG | 0.589280 | 4.4:+33562477 | MS.gene052345:CDS |
| GCAAAGAGTTGGTGCAATTG+TGG | 0.590276 | 4.4:+33564653 | MS.gene052345:CDS |
| GACGGTGGAGATTCATTCGG+AGG | 0.591475 | 4.4:+33562492 | MS.gene052345:CDS |
| ATAGCCGAAGCTAAGTCAGC+CGG | 0.591802 | 4.4:-33562654 | None:intergenic |
| CCTGCACTGACTCCAAGTGG+TGG | 0.593747 | 4.4:-33564446 | None:intergenic |
| TTTCTGGAATTATTGAACAG+AGG | 0.594616 | 4.4:+33566121 | MS.gene052345:CDS |
| GCTAAGGTTGGATTTGAATG+CGG | 0.594787 | 4.4:+33562804 | MS.gene052345:CDS |
| AGAAGTCTCCGTTTATGCGG+TGG | 0.595528 | 4.4:+33562727 | MS.gene052345:CDS |
| AACAATGACGGACATGGACA+CGG | 0.598016 | 4.4:+33562537 | MS.gene052345:CDS |
| CGGAGACGGAGGGAAAGTGG+AGG | 0.602640 | 4.4:-33562375 | None:intergenic |
| AGCAATGACGGAGGAAAGAG+CGG | 0.605733 | 4.4:+33562573 | MS.gene052345:CDS |
| GGAGACGGAGAAAGCAATGA+CGG | 0.605922 | 4.4:+33562561 | MS.gene052345:CDS |
| TTGAGAAGTCTCCGTTTATG+CGG | 0.611377 | 4.4:+33562724 | MS.gene052345:CDS |
| GGAGACGGAGGGAAAGTGGA+GGG | 0.611726 | 4.4:-33562374 | None:intergenic |
| ATGCATTATCTGGGCAGTTG+TGG | 0.612230 | 4.4:-33564487 | None:intergenic |
| GGAGATTCATTCGGAGGACA+CGG | 0.612633 | 4.4:+33562498 | MS.gene052345:CDS |
| TTGATACGGAAAGAAGGAGA+AGG | 0.613206 | 4.4:-33562411 | None:intergenic |
| TCCACCGTCGAAAGAAGGTA+CGG | 0.619051 | 4.4:-33562478 | None:intergenic |
| GGAAATTGTGTTCGCCGATG+TGG | 0.619314 | 4.4:+33563678 | MS.gene052345:CDS |
| AAGGAGTGATACGGAGACGG+AGG | 0.622593 | 4.4:-33562386 | None:intergenic |
| TTAGCTTCGGCTATCAAGGA+AGG | 0.626770 | 4.4:+33562663 | MS.gene052345:CDS |
| GCCCCTGCACTGACTCCAAG+TGG | 0.636274 | 4.4:-33564449 | None:intergenic |
| AACCTCTCAACTACAGACGC+CGG | 0.638287 | 4.4:-33562693 | None:intergenic |
| AGGAGTGATACGGAGACGGA+GGG | 0.638317 | 4.4:-33562385 | None:intergenic |
| CTGCTGCTGAGTATGATCGC+CGG | 0.647821 | 4.4:+33563632 | MS.gene052345:CDS |
| TGTTAATAAGGATTCTGCAG+AGG | 0.649189 | 4.4:+33565721 | MS.gene052345:CDS |
| GTGGAATGGAGAATGAAGAG+AGG | 0.659755 | 4.4:-33562447 | None:intergenic |
| TGAGAATATTCATACCACAT+CGG | 0.668109 | 4.4:-33563692 | None:intergenic |
| GACGGAGAAAGCAATGACGG+AGG | 0.670438 | 4.4:+33562564 | MS.gene052345:CDS |
| GATGGGTGGATTATGCACGT+TGG | 0.670645 | 4.4:+33566325 | MS.gene052345:intron |
| ACCACTTGGAGTCAGTGCAG+GGG | 0.698840 | 4.4:+33564448 | MS.gene052345:CDS |
| GATTCATTCGGAGGACACGG+TGG | 0.704653 | 4.4:+33562501 | MS.gene052345:CDS |
| AATGACGGAGGAAAGAGCGG+CGG | 0.719319 | 4.4:+33562576 | MS.gene052345:CDS |
| AATGACGGACATGGACACGG+AGG | 0.724089 | 4.4:+33562540 | MS.gene052345:CDS |
| TGAAGAGAGGATCTGTGCGG+TGG | 0.732308 | 4.4:-33562434 | None:intergenic |
| GGTGGTCTAAGAGAAACCGT+AGG | 0.739590 | 4.4:-33564428 | None:intergenic |
| ACCGTCGAAAGAAGGTACGG+CGG | 0.744756 | 4.4:-33562475 | None:intergenic |
| GAATGAAGAGAGGATCTGTG+CGG | 0.828823 | 4.4:-33562437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGATATAAATGAAT+TGG | + | chr4.4:33564055-33564074 | MS.gene052345:intron | 10.0% |
| !! | AATATATGATATAGATACTT+TGG | - | chr4.4:33565542-33565561 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAACAGTTTCTT+TGG | + | chr4.4:33564102-33564121 | MS.gene052345:intron | 15.0% |
| !!! | AAATCTTTTATTGAAAGAAA+AGG | - | chr4.4:33565569-33565588 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTAATTTGAATTG+AGG | + | chr4.4:33562987-33563006 | MS.gene052345:intron | 15.0% |
| !!! | TGTTTTTTAATTTGAATTGA+GGG | + | chr4.4:33562988-33563007 | MS.gene052345:intron | 15.0% |
| !!! | TTAATTTAATTTAGCTTCTA+TGG | + | chr4.4:33562875-33562894 | MS.gene052345:intron | 15.0% |
| !!! | TTATTTTTAATGTTTCTAGT+AGG | + | chr4.4:33565189-33565208 | MS.gene052345:intron | 15.0% |
| !! | ACTAATTGTTATACAAAATG+TGG | + | chr4.4:33564734-33564753 | MS.gene052345:intron | 20.0% |
| !! | ATATGAAATCATTTATCTAC+TGG | + | chr4.4:33565480-33565499 | MS.gene052345:intron | 20.0% |
| !! | CTGAATTAATTTAGTTGTAA+TGG | + | chr4.4:33562935-33562954 | MS.gene052345:intron | 20.0% |
| !!! | AAGAGTTATTTTTCTATTCA+TGG | + | chr4.4:33565241-33565260 | MS.gene052345:intron | 20.0% |
| !!! | ATCATATACCCATAATTTTA+AGG | - | chr4.4:33565123-33565142 | None:intergenic | 20.0% |
| !!! | CTCAAACATTTTTAATATGA+TGG | - | chr4.4:33566034-33566053 | None:intergenic | 20.0% |
| !!! | TTCATTGTTTTAAATGTAAG+TGG | + | chr4.4:33565607-33565626 | MS.gene052345:intron | 20.0% |
| !!! | TTTAGTTATATTGAGTGTTT+TGG | + | chr4.4:33563446-33563465 | MS.gene052345:intron | 20.0% |
| ! | AAAACAGTTTCTTTGGTATT+AGG | + | chr4.4:33564109-33564128 | MS.gene052345:intron | 25.0% |
| ! | AAACATGTCAAAAATAGTCT+GGG | - | chr4.4:33563874-33563893 | None:intergenic | 25.0% |
| ! | AGTTTGAATATGGTTATTGT+TGG | + | chr4.4:33563415-33563434 | MS.gene052345:intron | 25.0% |
| ! | CAATTGTGGTATGTATAATT+TGG | + | chr4.4:33564667-33564686 | MS.gene052345:intron | 25.0% |
| ! | CCTGTTAACCTTAAAATTAT+GGG | + | chr4.4:33565112-33565131 | MS.gene052345:intron | 25.0% |
| ! | GAATTTAAACACTATAAGTC+CGG | - | chr4.4:33565036-33565055 | None:intergenic | 25.0% |
| ! | GTTAACAGACATATGTATTA+AGG | - | chr4.4:33564265-33564284 | None:intergenic | 25.0% |
| ! | GTTTGAATATGGTTATTGTT+GGG | + | chr4.4:33563416-33563435 | MS.gene052345:intron | 25.0% |
| ! | TCATAAAACATGAGTTATAC+TGG | - | chr4.4:33566292-33566311 | None:intergenic | 25.0% |
| ! | TCCTGTTAACCTTAAAATTA+TGG | + | chr4.4:33565111-33565130 | MS.gene052345:intron | 25.0% |
| ! | TCTCATTTACCTTTAAATCA+TGG | + | chr4.4:33564998-33565017 | MS.gene052345:intron | 25.0% |
| !! | AGCATTAGTAGATTTTAGAT+TGG | - | chr4.4:33565863-33565882 | None:intergenic | 25.0% |
| !! | ATGAAAAACACTCTTTTGTT+TGG | + | chr4.4:33564167-33564186 | MS.gene052345:intron | 25.0% |
| !! | TATATGTTGATTGACAATCT+GGG | + | chr4.4:33563582-33563601 | MS.gene052345:intron | 25.0% |
| !! | TCTAAAATCTACTAATGCTT+CGG | + | chr4.4:33565864-33565883 | MS.gene052345:intron | 25.0% |
| !! | TTATATGTTGATTGACAATC+TGG | + | chr4.4:33563581-33563600 | MS.gene052345:intron | 25.0% |
| !!! | AAACAATTTTGACAACCTAA+TGG | + | chr4.4:33564561-33564580 | MS.gene052345:intron | 25.0% |
| !!! | GGATTCATTGTTTTAAATTG+CGG | + | chr4.4:33563009-33563028 | MS.gene052345:intron | 25.0% |
| !!! | TGAAAAACACTCTTTTGTTT+GGG | + | chr4.4:33564168-33564187 | MS.gene052345:intron | 25.0% |
| AAATGTAAGTGGAATCAACT+AGG | + | chr4.4:33565618-33565637 | MS.gene052345:intron | 30.0% | |
| AACATGTCAAAAATAGTCTG+GGG | - | chr4.4:33563873-33563892 | None:intergenic | 30.0% | |
| AACCATGTGAAAGTAAGATA+TGG | - | chr4.4:33564531-33564550 | None:intergenic | 30.0% | |
| AAGAATACTACATTTCTCTG+TGG | + | chr4.4:33564193-33564212 | MS.gene052345:intron | 30.0% | |
| AATGGAATTAAAGCTTGACA+AGG | + | chr4.4:33562953-33562972 | MS.gene052345:intron | 30.0% | |
| ACCATGTGAAAGTAAGATAT+GGG | - | chr4.4:33564530-33564549 | None:intergenic | 30.0% | |
| AGAATGAGAAGAAAGAGAAT+GGG | - | chr4.4:33562319-33562338 | None:intergenic | 30.0% | |
| AGTTCTCATTTGCCTAATTA+TGG | + | chr4.4:33564818-33564837 | MS.gene052345:intron | 30.0% | |
| ATAGTGTAAGAATGAAACCT+TGG | - | chr4.4:33562844-33562863 | None:intergenic | 30.0% | |
| ATATGAAGCAGATTGAGATT+TGG | + | chr4.4:33563220-33563239 | MS.gene052345:intron | 30.0% | |
| ATGGTTAAGTTTAATTCAGC+TGG | + | chr4.4:33565307-33565326 | MS.gene052345:intron | 30.0% | |
| CAAAGATGAAAATGCTAACA+AGG | - | chr4.4:33563850-33563869 | None:intergenic | 30.0% | |
| CAATAATTCCAGAAAGAACT+TGG | - | chr4.4:33566116-33566135 | None:intergenic | 30.0% | |
| CAATGAATGCAAATAACACT+CGG | - | chr4.4:33565594-33565613 | None:intergenic | 30.0% | |
| CGTAAGTAAATACTACCATT+AGG | - | chr4.4:33564579-33564598 | None:intergenic | 30.0% | |
| CTCAGGTAAAAAGAATAATG+TGG | + | chr4.4:33565812-33565831 | MS.gene052345:intron | 30.0% | |
| GAAACATGTCAAAAATAGTC+TGG | - | chr4.4:33563875-33563894 | None:intergenic | 30.0% | |
| GAGTTGTATGATTATTGAGT+AGG | + | chr4.4:33563484-33563503 | MS.gene052345:intron | 30.0% | |
| GATTATTGAGTAGGAAGATT+GGG | + | chr4.4:33563493-33563512 | MS.gene052345:intron | 30.0% | |
| GGGATTGAATAGTTTGAATA+TGG | + | chr4.4:33563405-33563424 | MS.gene052345:intron | 30.0% | |
| GTAGTAACTATAACTAAGCA+AGG | - | chr4.4:33563747-33563766 | None:intergenic | 30.0% | |
| GTATTGTTGAAATTCTAGCA+TGG | + | chr4.4:33565159-33565178 | MS.gene052345:intron | 30.0% | |
| TACTACATGTTGTCTTATGA+CGG | + | chr4.4:33563761-33563780 | MS.gene052345:intron | 30.0% | |
| TATGAAGCAGATTGAGATTT+GGG | + | chr4.4:33563221-33563240 | MS.gene052345:intron | 30.0% | |
| TATTCTTTCTTGCAAAGAGT+TGG | + | chr4.4:33564642-33564661 | MS.gene052345:CDS | 30.0% | |
| TGAGAATATTCATACCACAT+CGG | - | chr4.4:33563695-33563714 | None:intergenic | 30.0% | |
| TGATTATTGAGTAGGAAGAT+TGG | + | chr4.4:33563492-33563511 | MS.gene052345:intron | 30.0% | |
| TGGTTAAGTTTAATTCAGCT+GGG | + | chr4.4:33565308-33565327 | MS.gene052345:intron | 30.0% | |
| TTACCTTTAAATCATGGCTT+TGG | + | chr4.4:33565004-33565023 | MS.gene052345:intron | 30.0% | |
| TTGACTAGAACTTGAGATAT+CGG | + | chr4.4:33563924-33563943 | MS.gene052345:intron | 30.0% | |
| ! | AAAAATCTGATTTGCCTGAT+AGG | + | chr4.4:33566088-33566107 | MS.gene052345:intron | 30.0% |
| ! | AATTATTGAACAGAGGCTTT+TGG | + | chr4.4:33566128-33566147 | MS.gene052345:CDS | 30.0% |
| ! | ATCTTTTATCACATCATGCA+TGG | + | chr4.4:33565993-33566012 | MS.gene052345:intron | 30.0% |
| ! | ATGATTTTGCCTTTACAGAT+GGG | + | chr4.4:33566308-33566327 | MS.gene052345:intron | 30.0% |
| ! | CACATTATTCTTTTTACCTG+AGG | - | chr4.4:33565814-33565833 | None:intergenic | 30.0% |
| ! | TATGATTTTGCCTTTACAGA+TGG | + | chr4.4:33566307-33566326 | MS.gene052345:intron | 30.0% |
| ! | TGATGATCTTTTTCTTGCTA+AGG | + | chr4.4:33562788-33562807 | MS.gene052345:CDS | 30.0% |
| ! | TTTGCATTTTGCTTTCATTC+AGG | + | chr4.4:33565655-33565674 | MS.gene052345:intron | 30.0% |
| !! | ATAGTAGCATCAGAAGTATT+TGG | - | chr4.4:33564136-33564155 | None:intergenic | 30.0% |
| !! | ATTTTGCTTTCATTCAGGTT+GGG | + | chr4.4:33565660-33565679 | MS.gene052345:intron | 30.0% |
| !! | TTTCTGGAATTATTGAACAG+AGG | + | chr4.4:33566121-33566140 | MS.gene052345:CDS | 30.0% |
| !!! | ACCATTAGTGAGATTTTTTG+AGG | + | chr4.4:33565837-33565856 | MS.gene052345:intron | 30.0% |
| !!! | ATTGTTTTAAATTGCGGTTG+CGG | + | chr4.4:33563015-33563034 | MS.gene052345:intron | 30.0% |
| !!! | CCCATAATTTTAAGGTTAAC+AGG | - | chr4.4:33565115-33565134 | None:intergenic | 30.0% |
| !!! | GGAGAAATTGACAGTTTTTT+TGG | + | chr4.4:33564076-33564095 | MS.gene052345:intron | 30.0% |
| !!! | TTTTTTTCTTCGATTTCCTC+TGG | + | chr4.4:33563956-33563975 | MS.gene052345:intron | 30.0% |
| AAACGATAGCATGTACAAAG+TGG | - | chr4.4:33564290-33564309 | None:intergenic | 35.0% | |
| AAAGCCTAAATCTTGGTCAT+TGG | + | chr4.4:33565368-33565387 | MS.gene052345:intron | 35.0% | |
| AACTAAGCAAGGAAATTCAC+AGG | - | chr4.4:33563736-33563755 | None:intergenic | 35.0% | |
| ACAATGCAATAGGGATGTTA+TGG | - | chr4.4:33564357-33564376 | None:intergenic | 35.0% | |
| AGCCTTCTTTGCATTAATTG+CGG | - | chr4.4:33565702-33565721 | None:intergenic | 35.0% | |
| AGTTTATTTACCTGCACCTA+CGG | + | chr4.4:33564412-33564431 | MS.gene052345:CDS | 35.0% | |
| ATAAGAGTAATGTGAAGAGC+AGG | - | chr4.4:33564898-33564917 | None:intergenic | 35.0% | |
| ATATGGGATATATCAAGACC+TGG | - | chr4.4:33564514-33564533 | None:intergenic | 35.0% | |
| ATGAAGCAGATTGAGATTTG+GGG | + | chr4.4:33563222-33563241 | MS.gene052345:intron | 35.0% | |
| CAATGCAATAGGGATGTTAT+GGG | - | chr4.4:33564356-33564375 | None:intergenic | 35.0% | |
| CATCGAAAAATTTCTCTCTC+CGG | - | chr4.4:33563654-33563673 | None:intergenic | 35.0% | |
| CATTACTCTTATGAGCACTT+CGG | + | chr4.4:33564906-33564925 | MS.gene052345:intron | 35.0% | |
| CATTCTTAATTTCCTTCCAC+AGG | + | chr4.4:33564599-33564618 | MS.gene052345:intron | 35.0% | |
| CCACAGGAAACTAAAAAGAT+AGG | - | chr4.4:33564708-33564727 | None:intergenic | 35.0% | |
| CGTCTCAAGATTTGTATTGT+TGG | - | chr4.4:33565058-33565077 | None:intergenic | 35.0% | |
| CTGAAGAACAAGATAGTGAA+GGG | + | chr4.4:33565505-33565524 | MS.gene052345:intron | 35.0% | |
| GAACCAAAGCCATGATTTAA+AGG | - | chr4.4:33565010-33565029 | None:intergenic | 35.0% | |
| GACTACAATACATGTTTCAC+AGG | - | chr4.4:33564329-33564348 | None:intergenic | 35.0% | |
| GAGAATGAGAAGAAAGAGAA+TGG | - | chr4.4:33562320-33562339 | None:intergenic | 35.0% | |
| GCCTCAAAAAATCTCACTAA+TGG | - | chr4.4:33565841-33565860 | None:intergenic | 35.0% | |
| TAAGTTTAATTCAGCTGGGT+GGG | + | chr4.4:33565312-33565331 | MS.gene052345:intron | 35.0% | |
| TATCAAGGAAGGTAAGATTC+CGG | + | chr4.4:33562674-33562693 | MS.gene052345:CDS | 35.0% | |
| TCCCATATCTTACTTTCACA+TGG | + | chr4.4:33564526-33564545 | MS.gene052345:intron | 35.0% | |
| TCTGAAGAACAAGATAGTGA+AGG | + | chr4.4:33565504-33565523 | MS.gene052345:intron | 35.0% | |
| TGCAAAGAAGGCTGTTAATA+AGG | + | chr4.4:33565709-33565728 | MS.gene052345:CDS | 35.0% | |
| TGTTAATAAGGATTCTGCAG+AGG | + | chr4.4:33565721-33565740 | MS.gene052345:CDS | 35.0% | |
| TTAAGTTTAATTCAGCTGGG+TGG | + | chr4.4:33565311-33565330 | MS.gene052345:intron | 35.0% | |
| ! | CATTTTGCTTTCATTCAGGT+TGG | + | chr4.4:33565659-33565678 | MS.gene052345:intron | 35.0% |
| ! | GATCTTTTTCTTGCTAAGGT+TGG | + | chr4.4:33562792-33562811 | MS.gene052345:CDS | 35.0% |
| ! | TGCTGCTTATGGTGTTTATA+TGG | + | chr4.4:33565775-33565794 | MS.gene052345:CDS | 35.0% |
| !! | ACTCTGCTTAACTTGTGTTT+CGG | - | chr4.4:33564944-33564963 | None:intergenic | 35.0% |
| !! | AGAGAAATTTTTCGATGAGC+TGG | + | chr4.4:33563657-33563676 | MS.gene052345:CDS | 35.0% |
| !! | AGCACAAGAGTACCATAATT+AGG | - | chr4.4:33564833-33564852 | None:intergenic | 35.0% |
| !! | CTCTCTACAAGTTTGTTGTA+TGG | + | chr4.4:33565288-33565307 | MS.gene052345:intron | 35.0% |
| !! | GATGACGGAAAAAACAATGA+CGG | + | chr4.4:33562525-33562544 | MS.gene052345:CDS | 35.0% |
| !! | GTATTTGTTGTCACTTCTTC+TGG | + | chr4.4:33563988-33564007 | MS.gene052345:intron | 35.0% |
| !!! | CCTATCTTTTTAGTTTCCTG+TGG | + | chr4.4:33564705-33564724 | MS.gene052345:intron | 35.0% |
| AAACTAAGACTCTGCTATGG+TGG | - | chr4.4:33563126-33563145 | None:intergenic | 40.0% | |
| AACAATTAGTCACTAGCCAC+AGG | - | chr4.4:33564724-33564743 | None:intergenic | 40.0% | |
| AAGACCTGGAATGCATTATC+TGG | - | chr4.4:33564500-33564519 | None:intergenic | 40.0% | |
| AGACCTGGAATGCATTATCT+GGG | - | chr4.4:33564499-33564518 | None:intergenic | 40.0% | |
| AGATCCAACTGCAAAAAGCT+TGG | - | chr4.4:33564783-33564802 | None:intergenic | 40.0% | |
| AGCAAACTAAGACTCTGCTA+TGG | - | chr4.4:33563129-33563148 | None:intergenic | 40.0% | |
| AGGGAAAGAAAAAGAAGGGA+GGG | - | chr4.4:33562358-33562377 | None:intergenic | 40.0% | |
| AGTAGGCTGTTTGAATGCTA+TGG | + | chr4.4:33565206-33565225 | MS.gene052345:intron | 40.0% | |
| AGTGGAGGGAAAGAAAAAGA+AGG | - | chr4.4:33562363-33562382 | None:intergenic | 40.0% | |
| ATAAACACCATAAGCAGCAC+TGG | - | chr4.4:33565774-33565793 | None:intergenic | 40.0% | |
| ATCCCTATTGCATTGTTCTC+AGG | + | chr4.4:33564361-33564380 | MS.gene052345:intron | 40.0% | |
| ATGCTTCGGTCAACTAATGT+TGG | + | chr4.4:33565878-33565897 | MS.gene052345:intron | 40.0% | |
| ATTGCATTGTTCTCAGGTCA+TGG | + | chr4.4:33564367-33564386 | MS.gene052345:intron | 40.0% | |
| CAAACTATTCAATCCCTCCA+TGG | - | chr4.4:33563401-33563420 | None:intergenic | 40.0% | |
| CAAATACGACATACAACCAG+AGG | - | chr4.4:33563975-33563994 | None:intergenic | 40.0% | |
| CAAGCCAATGACCAAGATTT+AGG | - | chr4.4:33565375-33565394 | None:intergenic | 40.0% | |
| CATAATCCACCCATCTGTAA+AGG | - | chr4.4:33566320-33566339 | None:intergenic | 40.0% | |
| CTACTGCATCAGCAATATTG+TGG | + | chr4.4:33563362-33563381 | MS.gene052345:intron | 40.0% | |
| GAAAAAGAAGGGAGGGATTT+AGG | - | chr4.4:33562351-33562370 | None:intergenic | 40.0% | |
| GAAAGAACTTGGTACCTATC+AGG | - | chr4.4:33566105-33566124 | None:intergenic | 40.0% | |
| GAAGAAAGAGAATGGGAAGA+AGG | - | chr4.4:33562312-33562331 | None:intergenic | 40.0% | |
| GACCTGAGAACAATGCAATA+GGG | - | chr4.4:33564366-33564385 | None:intergenic | 40.0% | |
| GATAGGTACCAAGTTCTTTC+TGG | + | chr4.4:33566105-33566124 | MS.gene052345:intron | 40.0% | |
| GCTAAGGTTGGATTTGAATG+CGG | + | chr4.4:33562804-33562823 | MS.gene052345:CDS | 40.0% | |
| GTAGGCTGTTTGAATGCTAT+GGG | + | chr4.4:33565207-33565226 | MS.gene052345:intron | 40.0% | |
| GTGGAGGGAAAGAAAAAGAA+GGG | - | chr4.4:33562362-33562381 | None:intergenic | 40.0% | |
| TATGGTACTCTTGTGCTTTG+TGG | + | chr4.4:33564836-33564855 | MS.gene052345:intron | 40.0% | |
| TGAACCCAAATACGTATTGC+CGG | - | chr4.4:33566211-33566230 | None:intergenic | 40.0% | |
| TGACCTGAGAACAATGCAAT+AGG | - | chr4.4:33564367-33564386 | None:intergenic | 40.0% | |
| TGCCGCAATTAATGCAAAGA+AGG | + | chr4.4:33565697-33565716 | MS.gene052345:CDS | 40.0% | |
| TGGATTATGCACGTTGGATA+GGG | + | chr4.4:33566331-33566350 | MS.gene052345:CDS | 40.0% | |
| TTGAGAAGTCTCCGTTTATG+CGG | + | chr4.4:33562724-33562743 | MS.gene052345:CDS | 40.0% | |
| TTGATACGGAAAGAAGGAGA+AGG | - | chr4.4:33562414-33562433 | None:intergenic | 40.0% | |
| ! | AGAGTCATGATTTTGCAGTG+GGG | + | chr4.4:33564959-33564978 | MS.gene052345:intron | 40.0% |
| ! | ATTTTGCCTTTACAGATGGG+TGG | + | chr4.4:33566311-33566330 | MS.gene052345:intron | 40.0% |
| ! | CAGAGTCATGATTTTGCAGT+GGG | + | chr4.4:33564958-33564977 | MS.gene052345:intron | 40.0% |
| ! | GTCTGTAGTTGAGAGGTTTT+TGG | + | chr4.4:33562698-33562717 | MS.gene052345:CDS | 40.0% |
| !! | AGCAGCACTGGTAGAAAATA+TGG | - | chr4.4:33565762-33565781 | None:intergenic | 40.0% |
| !! | GCAGCACTGGTAGAAAATAT+GGG | - | chr4.4:33565761-33565780 | None:intergenic | 40.0% |
| !! | GGAAAAAACAATGACGGACA+TGG | + | chr4.4:33562531-33562550 | MS.gene052345:CDS | 40.0% |
| !!! | TTTTCTACCAGTGCTGCTTA+TGG | + | chr4.4:33565764-33565783 | MS.gene052345:CDS | 40.0% |
| AACACATGTACGACCACATC+AGG | - | chr4.4:33563312-33563331 | None:intergenic | 45.0% | |
| AGGCAACTTGAAACCATGGA+GGG | + | chr4.4:33563385-33563404 | MS.gene052345:intron | 45.0% | |
| AGTAGCATTGCACTGCAGTT+GGG | - | chr4.4:33563347-33563366 | None:intergenic | 45.0% | |
| ATCATACTCAGCAGCAGTCT+AGG | - | chr4.4:33563629-33563648 | None:intergenic | 45.0% | |
| ATGCATTATCTGGGCAGTTG+TGG | - | chr4.4:33564490-33564509 | None:intergenic | 45.0% | |
| CACTAAGTACAAGCTTGTGC+TGG | - | chr4.4:33566167-33566186 | None:intergenic | 45.0% | |
| CCCCAAAGAACATCAGTGTA+CGG | - | chr4.4:33563808-33563827 | None:intergenic | 45.0% | |
| CCGTACACTGATGTTCTTTG+GGG | + | chr4.4:33563805-33563824 | MS.gene052345:intron | 45.0% | |
| CGAACCGGCAATACGTATTT+GGG | + | chr4.4:33566204-33566223 | MS.gene052345:CDS | 45.0% | |
| CTGCATCAGCAATATTGTGG+AGG | + | chr4.4:33563365-33563384 | MS.gene052345:intron | 45.0% | |
| GAAAGAGAATGGGAAGAAGG+AGG | - | chr4.4:33562309-33562328 | None:intergenic | 45.0% | |
| GAATGAAGAGAGGATCTGTG+CGG | - | chr4.4:33562440-33562459 | None:intergenic | 45.0% | |
| GAGAAGGAGAAGGAGTGATA+CGG | - | chr4.4:33562398-33562417 | None:intergenic | 45.0% | |
| GAGGGAAAGAAAAAGAAGGG+AGG | - | chr4.4:33562359-33562378 | None:intergenic | 45.0% | |
| GCACTGCATCATAGACAAAC+TGG | - | chr4.4:33565348-33565367 | None:intergenic | 45.0% | |
| GCAGTGCAAAGCCTAAATCT+TGG | + | chr4.4:33565361-33565380 | MS.gene052345:intron | 45.0% | |
| GCCGTACACTGATGTTCTTT+GGG | + | chr4.4:33563804-33563823 | MS.gene052345:intron | 45.0% | |
| GGATTATGCACGTTGGATAG+GGG | + | chr4.4:33566332-33566351 | MS.gene052345:CDS | 45.0% | |
| GTCTATTGCGTTTCCTGATG+TGG | + | chr4.4:33563296-33563315 | MS.gene052345:intron | 45.0% | |
| GTGGAATGGAGAATGAAGAG+AGG | - | chr4.4:33562450-33562469 | None:intergenic | 45.0% | |
| GTTACCTTGCACAGCGTAAT+GGG | + | chr4.4:33564756-33564775 | MS.gene052345:intron | 45.0% | |
| GTTTCTCTTAGACCACCACT+TGG | + | chr4.4:33564434-33564453 | MS.gene052345:CDS | 45.0% | |
| TCATACTCAGCAGCAGTCTA+GGG | - | chr4.4:33563628-33563647 | None:intergenic | 45.0% | |
| TCGAACCGGCAATACGTATT+TGG | + | chr4.4:33566203-33566222 | MS.gene052345:CDS | 45.0% | |
| TGAAGCAACCACCGCATAAA+CGG | - | chr4.4:33562738-33562757 | None:intergenic | 45.0% | |
| TGACTTAGCTTCGGCTATCA+AGG | + | chr4.4:33562659-33562678 | MS.gene052345:CDS | 45.0% | |
| TGCCGTACACTGATGTTCTT+TGG | + | chr4.4:33563803-33563822 | MS.gene052345:intron | 45.0% | |
| TTAGCTTCGGCTATCAAGGA+AGG | + | chr4.4:33562663-33562682 | MS.gene052345:CDS | 45.0% | |
| TTCGACGGTGGAGATTCATT+CGG | + | chr4.4:33562489-33562508 | MS.gene052345:CDS | 45.0% | |
| ! | GCAGAGTCATGATTTTGCAG+TGG | + | chr4.4:33564957-33564976 | MS.gene052345:intron | 45.0% |
| ! | GTGGATTATGCACGTTGGAT+AGG | + | chr4.4:33566330-33566349 | MS.gene052345:CDS | 45.0% |
| !! | AACAATGACGGACATGGACA+CGG | + | chr4.4:33562537-33562556 | MS.gene052345:CDS | 45.0% |
| !! | ATCATGGCTTTGGTTCTAGC+CGG | + | chr4.4:33565014-33565033 | MS.gene052345:intron | 45.0% |
| !! | CTTTGCTTTGCTGTTCGAAC+CGG | + | chr4.4:33566189-33566208 | MS.gene052345:CDS | 45.0% |
| !! | GAATGAGGCGTTGTTGTTGT+TGG | + | chr4.4:33562602-33562621 | MS.gene052345:CDS | 45.0% |
| !! | GCAAAGAGTTGGTGCAATTG+TGG | + | chr4.4:33564653-33564672 | MS.gene052345:CDS | 45.0% |
| !!! | ATATTTTATTTTTTTACTTT+TGG | + | chr4.4:33565939-33565958 | MS.gene052345:intron | 5.0% |
| AACCTCTCAACTACAGACGC+CGG | - | chr4.4:33562696-33562715 | None:intergenic | 50.0% | |
| AGAAGGGAGGGATTTAGGAG+TGG | - | chr4.4:33562346-33562365 | None:intergenic | 50.0% | |
| AGAAGTCTCCGTTTATGCGG+TGG | + | chr4.4:33562727-33562746 | MS.gene052345:CDS | 50.0% | |
| AGTTGGATCTGCTTCGTCAC+TGG | + | chr4.4:33564793-33564812 | MS.gene052345:CDS | 50.0% | |
| ATACTCAGCAGCAGTCTAGG+GGG | - | chr4.4:33563626-33563645 | None:intergenic | 50.0% | |
| ATAGCCGAAGCTAAGTCAGC+CGG | - | chr4.4:33562657-33562676 | None:intergenic | 50.0% | |
| ATGCGGTGGTTGCTTCAGTT+TGG | + | chr4.4:33562741-33562760 | MS.gene052345:CDS | 50.0% | |
| ATGGGAAGAAGGAGGAACGA+AGG | - | chr4.4:33562301-33562320 | None:intergenic | 50.0% | |
| CAGTAGCATTGCACTGCAGT+TGG | - | chr4.4:33563348-33563367 | None:intergenic | 50.0% | |
| CATACTCAGCAGCAGTCTAG+GGG | - | chr4.4:33563627-33563646 | None:intergenic | 50.0% | |
| CGGAAAGAAGGAGAAGGAGA+AGG | - | chr4.4:33562408-33562427 | None:intergenic | 50.0% | |
| CTAAGAGAAACCGTAGGTGC+AGG | - | chr4.4:33564425-33564444 | None:intergenic | 50.0% | |
| CTGCCCAGATAATGCATTCC+AGG | + | chr4.4:33564493-33564512 | MS.gene052345:CDS | 50.0% | |
| GAATCTCCACCGTCGAAAGA+AGG | - | chr4.4:33562486-33562505 | None:intergenic | 50.0% | |
| GAGAAGGAGTGATACGGAGA+CGG | - | chr4.4:33562392-33562411 | None:intergenic | 50.0% | |
| GAGGCAACTTGAAACCATGG+AGG | + | chr4.4:33563384-33563403 | MS.gene052345:intron | 50.0% | |
| GGAAATTGTGTTCGCCGATG+TGG | + | chr4.4:33563678-33563697 | MS.gene052345:CDS | 50.0% | |
| GGAGACGGAGAAAGCAATGA+CGG | + | chr4.4:33562561-33562580 | MS.gene052345:CDS | 50.0% | |
| GGAGATTCATTCGGAGGACA+CGG | + | chr4.4:33562498-33562517 | MS.gene052345:CDS | 50.0% | |
| GGTGGTCTAAGAGAAACCGT+AGG | - | chr4.4:33564431-33564450 | None:intergenic | 50.0% | |
| GGTTACCTTGCACAGCGTAA+TGG | + | chr4.4:33564755-33564774 | MS.gene052345:intron | 50.0% | |
| GTAGCATTGCACTGCAGTTG+GGG | - | chr4.4:33563346-33563365 | None:intergenic | 50.0% | |
| GTGGAGGCAACTTGAAACCA+TGG | + | chr4.4:33563381-33563400 | MS.gene052345:intron | 50.0% | |
| GTTGGATTTGAATGCGGCGT+CGG | + | chr4.4:33562810-33562829 | MS.gene052345:CDS | 50.0% | |
| TCCACCGTCGAAAGAAGGTA+CGG | - | chr4.4:33562481-33562500 | None:intergenic | 50.0% | |
| ! | AGCAATGACGGAGGAAAGAG+CGG | + | chr4.4:33562573-33562592 | MS.gene052345:CDS | 50.0% |
| ! | AGCTTGTGCTGGTGCAACAA+AGG | - | chr4.4:33566156-33566175 | None:intergenic | 50.0% |
| ! | CGGTGGTTGATACGGAAAGA+AGG | - | chr4.4:33562420-33562439 | None:intergenic | 50.0% |
| ! | GAAAGAAGGTACGGCGGAAT+CGG | - | chr4.4:33562472-33562491 | None:intergenic | 50.0% |
| ! | GATCTGTGCGGTGGTTGATA+CGG | - | chr4.4:33562428-33562447 | None:intergenic | 50.0% |
| ! | GGGTCCAAGCTTTTTGCAGT+TGG | + | chr4.4:33564776-33564795 | MS.gene052345:CDS | 50.0% |
| ! | GTTGTTGTTGTTGGCGCAAG+CGG | + | chr4.4:33562611-33562630 | MS.gene052345:CDS | 50.0% |
| ! | TTGTTGTTGTTGGCGCAAGC+GGG | + | chr4.4:33562612-33562631 | MS.gene052345:CDS | 50.0% |
| !! | AAAGAGCGGCGGATTGAATG+AGG | + | chr4.4:33562587-33562606 | MS.gene052345:CDS | 50.0% |
| !! | GATGGGTGGATTATGCACGT+TGG | + | chr4.4:33566325-33566344 | MS.gene052345:intron | 50.0% |
| !! | TGGCAGTTTCTAGCAACCTC+AGG | + | chr4.4:33565795-33565814 | MS.gene052345:CDS | 50.0% |
| AAGGAGTGATACGGAGACGG+AGG | - | chr4.4:33562389-33562408 | None:intergenic | 55.0% | |
| ACCACTTGGAGTCAGTGCAG+GGG | + | chr4.4:33564448-33564467 | MS.gene052345:CDS | 55.0% | |
| AGGAGTGATACGGAGACGGA+GGG | - | chr4.4:33562388-33562407 | None:intergenic | 55.0% | |
| ATACGGAGACGGAGGGAAAG+TGG | - | chr4.4:33562381-33562400 | None:intergenic | 55.0% | |
| CACCACTTGGAGTCAGTGCA+GGG | + | chr4.4:33564447-33564466 | MS.gene052345:CDS | 55.0% | |
| CAGAGAGAGCAACCTGTGGA+AGG | - | chr4.4:33564614-33564633 | None:intergenic | 55.0% | |
| CGGTGGTTGCTTCAGTTTGG+TGG | + | chr4.4:33562744-33562763 | MS.gene052345:CDS | 55.0% | |
| CTGCTGCTGAGTATGATCGC+CGG | + | chr4.4:33563632-33563651 | MS.gene052345:CDS | 55.0% | |
| CTTCCACAGGTTGCTCTCTC+TGG | + | chr4.4:33564612-33564631 | MS.gene052345:intron | 55.0% | |
| GACGGAGAAAGCAATGACGG+AGG | + | chr4.4:33562564-33562583 | MS.gene052345:CDS | 55.0% | |
| GACGGTGGAGATTCATTCGG+AGG | + | chr4.4:33562492-33562511 | MS.gene052345:CDS | 55.0% | |
| GATCCAGAGAGAGCAACCTG+TGG | - | chr4.4:33564618-33564637 | None:intergenic | 55.0% | |
| GATTCATTCGGAGGACACGG+TGG | + | chr4.4:33562501-33562520 | MS.gene052345:CDS | 55.0% | |
| GGGAGGGATTTAGGAGTGGA+AGG | - | chr4.4:33562342-33562361 | None:intergenic | 55.0% | |
| TCCGCCGTACCTTCTTTCGA+CGG | + | chr4.4:33562474-33562493 | MS.gene052345:CDS | 55.0% | |
| TGAAGAGAGGATCTGTGCGG+TGG | - | chr4.4:33562437-33562456 | None:intergenic | 55.0% | |
| TGGACCCATTACGCTGTGCA+AGG | - | chr4.4:33564763-33564782 | None:intergenic | 55.0% | |
| TTCCGGCGTCTGTAGTTGAG+AGG | + | chr4.4:33562691-33562710 | MS.gene052345:CDS | 55.0% | |
| ! | AATGACGGAGGAAAGAGCGG+CGG | + | chr4.4:33562576-33562595 | MS.gene052345:CDS | 55.0% |
| ! | ACCGTCGAAAGAAGGTACGG+CGG | - | chr4.4:33562478-33562497 | None:intergenic | 55.0% |
| ! | TGTTGTTGTTGGCGCAAGCG+GGG | + | chr4.4:33562613-33562632 | MS.gene052345:CDS | 55.0% |
| !! | AATGACGGACATGGACACGG+AGG | + | chr4.4:33562540-33562559 | MS.gene052345:CDS | 55.0% |
| !! | TGTGCCGGCTGACTTAGCTT+CGG | + | chr4.4:33562650-33562669 | MS.gene052345:CDS | 55.0% |
| CCACCACTTGGAGTCAGTGC+AGG | + | chr4.4:33564446-33564465 | MS.gene052345:CDS | 60.0% | |
| GCCGTACCTTCTTTCGACGG+TGG | + | chr4.4:33562477-33562496 | MS.gene052345:CDS | 60.0% | |
| GGACATGGACACGGAGGAGA+CGG | + | chr4.4:33562546-33562565 | MS.gene052345:CDS | 60.0% | |
| GGAGACGGAGGGAAAGTGGA+GGG | - | chr4.4:33562377-33562396 | None:intergenic | 60.0% | |
| GGAGGACACGGTGGAGATGA+CGG | + | chr4.4:33562510-33562529 | MS.gene052345:CDS | 60.0% | |
| GTACGGCGGAATCGGTGGAA+TGG | - | chr4.4:33562464-33562483 | None:intergenic | 60.0% | |
| TGCGGATGCGAAGCGCATTG+TGG | + | chr4.4:33563033-33563052 | MS.gene052345:intron | 60.0% | |
| ! | AGAAGGTACGGCGGAATCGG+TGG | - | chr4.4:33562469-33562488 | None:intergenic | 60.0% |
| ! | GAGGTCGTTGGAGAGTGTGC+CGG | + | chr4.4:33562635-33562654 | MS.gene052345:CDS | 60.0% |
| !! | CCTGCACTGACTCCAAGTGG+TGG | - | chr4.4:33564449-33564468 | None:intergenic | 60.0% |
| CGGAGACGGAGGGAAAGTGG+AGG | - | chr4.4:33562378-33562397 | None:intergenic | 65.0% | |
| TGTTGTTGGCGCAAGCGGGG+AGG | + | chr4.4:33562616-33562635 | MS.gene052345:CDS | 65.0% | |
| !! | GCCCCTGCACTGACTCCAAG+TGG | - | chr4.4:33564452-33564471 | None:intergenic | 65.0% |
| !!! | CGGCGTCGGCGTTTTCACCA+AGG | + | chr4.4:33562824-33562843 | MS.gene052345:CDS | 65.0% |
| GGCGCAAGCGGGGAGGTCGT+TGG | + | chr4.4:33562623-33562642 | MS.gene052345:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33562279 | 33566362 | 33562279 | ID=MS.gene052345 |
| chr4.4 | mRNA | 33562279 | 33566362 | 33562279 | ID=MS.gene052345.t1;Parent=MS.gene052345 |
| chr4.4 | exon | 33562279 | 33562845 | 33562279 | ID=MS.gene052345.t1.exon1;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33562279 | 33562845 | 33562279 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33563631 | 33563699 | 33563631 | ID=MS.gene052345.t1.exon2;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33563631 | 33563699 | 33563631 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33564383 | 33564514 | 33564383 | ID=MS.gene052345.t1.exon3;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33564383 | 33564514 | 33564383 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33564621 | 33564674 | 33564621 | ID=MS.gene052345.t1.exon4;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33564621 | 33564674 | 33564621 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33564770 | 33564814 | 33564770 | ID=MS.gene052345.t1.exon5;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33564770 | 33564814 | 33564770 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33565677 | 33565816 | 33565677 | ID=MS.gene052345.t1.exon6;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33565677 | 33565816 | 33565677 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33566110 | 33566235 | 33566110 | ID=MS.gene052345.t1.exon7;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33566110 | 33566235 | 33566110 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| chr4.4 | exon | 33566326 | 33566362 | 33566326 | ID=MS.gene052345.t1.exon8;Parent=MS.gene052345.t1 |
| chr4.4 | CDS | 33566326 | 33566362 | 33566326 | ID=cds.MS.gene052345.t1;Parent=MS.gene052345.t1 |
| Gene Sequence |
| Protein sequence |
