AlfalfaGEDB | MS.gene067338

M. sativa cultivar XinJiangDaYe / MS.gene067338

KEGG: K11434
GO: GO:0003674 GO:0003824 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0009987 GO:0016740 GO:0016741 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:1901564
PFAM: PF06325.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067338.t1	XP_024632264.1	97.9	374	8	0	1	374	1	374	6.80E-216	759.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067338.t1	Q9MAT5	70.6	374	110	0	1	374	10	383	1.1e-161	570.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067338.t1	A0A072V8M2	97.9	374	8	0	1	374	1	374	4.9e-216	759.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050838	MS.gene067338	0.833491	5.17E-56	-1.69E-46
MS.gene051850	MS.gene067338	0.867885	9.84E-66	-1.69E-46
MS.gene051885	MS.gene067338	0.810582	1.07E-50	-1.69E-46
MS.gene051903	MS.gene067338	0.802922	4.46E-49	-1.69E-46
MS.gene052345	MS.gene067338	0.805103	1.57E-49	-1.69E-46
MS.gene056075	MS.gene067338	0.830838	2.34E-55	-1.69E-46
MS.gene057094	MS.gene067338	0.855494	6.08E-62	-1.69E-46
MS.gene06001	MS.gene067338	0.840603	7.87E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene064036	MS.gene067338	PPI
MS.gene067338	MS.gene030293	PPI
MS.gene067338	MS.gene91127	PPI
MS.gene067338	MS.gene88611	PPI
MS.gene067338	MS.gene026173	PPI
MS.gene067338	MS.gene75060	PPI
MS.gene29219	MS.gene067338	PPI
MS.gene66341	MS.gene067338	PPI
MS.gene68888	MS.gene067338	PPI
MS.gene75062	MS.gene067338	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067338.t1	MTR_2g054880	97.861	374	8	0	1	374	1	374	0.0	773
MS.gene067338.t1	MTR_1g113940	38.870	301	159	10	18	307	3	289	9.84e-56	186
MS.gene067338.t1	MTR_4g119900	37.540	309	172	7	26	333	142	430	2.29e-53	184
MS.gene067338.t1	MTR_4g119900	37.224	317	162	8	26	333	142	430	2.47e-53	185
MS.gene067338.t1	MTR_2g436780	37.217	309	173	8	26	333	144	432	1.57e-52	182
MS.gene067338.t1	MTR_2g436780	37.217	309	173	8	26	333	144	432	1.59e-52	182
MS.gene067338.t1	MTR_6g091770	33.046	348	200	10	26	372	65	380	4.50e-51	175
MS.gene067338.t1	MTR_3g013960	33.136	338	168	13	25	331	255	565	8.39e-40	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067338.t1	AT1G04870	72.626	358	98	0	17	374	26	383	0.0	577
MS.gene067338.t1	AT1G04870	68.214	280	89	0	95	374	1	280	9.03e-153	432
MS.gene067338.t1	AT3G20020	35.655	359	177	7	26	352	83	419	3.96e-62	206
MS.gene067338.t1	AT3G20020	35.655	359	177	7	26	352	83	419	4.86e-62	206
MS.gene067338.t1	AT4G29510	33.824	340	195	8	26	364	72	382	1.62e-53	182
MS.gene067338.t1	AT3G06930	35.905	337	190	12	2	333	121	436	3.52e-53	184
MS.gene067338.t1	AT3G06930	35.905	337	190	12	2	333	121	436	3.57e-53	184
MS.gene067338.t1	AT2G19670	33.434	332	183	9	26	352	48	346	3.03e-52	178
MS.gene067338.t1	AT3G20020	33.148	359	164	8	26	352	83	397	3.23e-52	179
MS.gene067338.t1	AT5G49020	36.893	309	174	10	26	333	149	437	2.32e-51	179

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Find 91 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACAAAACTGTGTGGATA+TGG	0.358771	2.3:+36816976	MS.gene067338:CDS
AACGCCGCCGCTGGTGGCCG+AGG	0.392661	2.3:+36812114	MS.gene067338:CDS
AACTCAATCTCATGTTCAGC+TGG	0.461498	2.3:-36817118	None:intergenic
AACTGTGTGGATATGGAGGG+TGG	0.718749	2.3:+36816983	MS.gene067338:CDS
AATACTTACATCACTCCTGT+TGG	0.521476	2.3:-36813465	None:intergenic
AATTTCTGTAGACATCGTTG+TGG	0.599319	2.3:+36816827	MS.gene067338:intron
ACAAAACTGTGTGGATATGG+AGG	0.629006	2.3:+36816979	MS.gene067338:CDS
ACAGAGAACACAAAACTGTG+TGG	0.712011	2.3:+36816970	MS.gene067338:CDS
ACAGTAATCTACACTAGGAG+CGG	0.702438	2.3:-36817146	None:intergenic
ACCAGTCAGCTATGGGCGAT+TGG	0.509747	2.3:+36814541	MS.gene067338:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAATGAATTCCATG+TGG	-	chr2.3:36814816-36814835	None:intergenic	30.0%
AAATTTGTCTCCGAATTTGT+AGG	+	chr2.3:36812904-36812923	MS.gene067338:intron	30.0%
AACCAAAATGAATTCCATGT+GGG	-	chr2.3:36814815-36814834	None:intergenic	30.0%
AACTTAATTGATACTTCCTC+CGG	+	chr2.3:36813089-36813108	MS.gene067338:intron	30.0%
AATAGACAACACTGTTCTAT+AGG	+	chr2.3:36815732-36815751	MS.gene067338:intron	30.0%
AATATTAATGAAGGAGCTGA+TGG	+	chr2.3:36817264-36817283	MS.gene067338:intron	30.0%
ACAATGAAAAGGCTATAAGA+CGG	-	chr2.3:36814992-36815011	None:intergenic	30.0%
ACATTGTCAGGATTGAAAAA+GGG	-	chr2.3:36817405-36817424	None:intergenic	30.0%
ACTGTAACACTGTTGTAAAA+CGG	+	chr2.3:36813878-36813897	MS.gene067338:intron	30.0%
ATACAGACACAAACACTTTA+AGG	-	chr2.3:36813344-36813363	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	36812096	36817686	36812096	ID=MS.gene067338
chr2.3	mRNA	36812096	36817686	36812096	ID=MS.gene067338.t1;Parent=MS.gene067338
chr2.3	exon	36812096	36812284	36812096	ID=MS.gene067338.t1.exon1;Parent=MS.gene067338.t1
chr2.3	CDS	36812096	36812284	36812096	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36812363	36812555	36812363	ID=MS.gene067338.t1.exon2;Parent=MS.gene067338.t1
chr2.3	CDS	36812363	36812555	36812363	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36813373	36813478	36813373	ID=MS.gene067338.t1.exon3;Parent=MS.gene067338.t1
chr2.3	CDS	36813373	36813478	36813373	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36814470	36814659	36814470	ID=MS.gene067338.t1.exon4;Parent=MS.gene067338.t1
chr2.3	CDS	36814470	36814659	36814470	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36816838	36817023	36816838	ID=MS.gene067338.t1.exon5;Parent=MS.gene067338.t1
chr2.3	CDS	36816838	36817023	36816838	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36817103	36817186	36817103	ID=MS.gene067338.t1.exon6;Parent=MS.gene067338.t1
chr2.3	CDS	36817103	36817186	36817103	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1
chr2.3	exon	36817510	36817686	36817510	ID=MS.gene067338.t1.exon7;Parent=MS.gene067338.t1
chr2.3	CDS	36817510	36817686	36817510	ID=cds.MS.gene067338.t1;Parent=MS.gene067338.t1

Gene Sequence

>MS.gene067338

ATGGGCACTTCTTCCGAAAACGCCGCCGCTGGTGGCCGAGGCACCGCCGTCCCCAAAGAAGTCGACTACGCTAATTACTTTTGCACCTACTCCTTTCTCTATCACCAAAAAGAAATGCTCTCAGATCGTGTTCGTATGGATGCTTACTTCAACGCTGTTTTTGAAAACAAACACCACTTTAAAGATAAGGTTAGTATCCTTAACTTAACTGGGTTTGGGTTTGGGTGATGAAATTTGTGAAATAATAATGATAAGAAAATTGTGTAGGTTGTTTTGGATGTTGGTGCTGGAAGTGGGATTCTTGCTATATGGTCAGCTCAAGCAGGTGCAAAGAAGGTTTATGCTGTTGAAGCTACTAAGATGTCGGAACATGCTCGTGCGCTTGTGAAATCGAATAATCTTGAGCAGGTTGTTGAGGTTATTGAGGGTTCTGTTGAGGATGTTACATTGCCTGAGAAAGGTTTGTTTGTATGTGTATTATTAGTTCTAGTTTAAGTTGTAAGGTTTTAGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACAGGGTAAGTCCTGGAAACAGCCTCTTGTGTAAAAAACATGGTAAGACTGCGTACAATACACCAAATGGTGGGACCCCTTCCTGGACCCTGCGTATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTAAGTTGTAAGGTTTTGAATTAAATCGTGGTTGTGATTGTGTTATGATATTTGATAATGCGGTTTTATTTGGTCAAATACCATAACTAAGACATCTGAAACCTTGAGAGTAAATCACCAAATTTGTCTCCGAATTTGTAGGACGCTATCAAATAAGTCTTGAAAATTATGAATATTTCAAAAAGGTCCTTGATTTTGTCAAATGTTACTCATTTTAGTTTATCCGATAGTCTGTGAGGGACTAGATTGTTATTAAGTGGTTAAATATAGGGTCCAAATTGATAATTTATGGTTAACATATAACAACTTAATTGATACTTCCTCCGGTCACTATTATAAGAAAATATTGTTTTTTCGGGTTACTTATGTATCTGGACATCAATTAAGGCGATATTTTGAGATATTCATAATCTGATTACCTATTTGAGAGTTTAGGGTTTAGGACTAGTTTGGTGATTTACGCAAAACCTTGATGTTGTGGCAACAATTGCAGTTGCATAAACCTTATATGAATTGTTAAATGTTGGTTGGTGTGCCTTTGTGTATCCTTTGATTGCCTTAAAGTGTTTGTGTCTGTATGACTTGCAGTTGATGTTATCATCTCTGAATGGATGGGTTATTTTCTTTTGCGAGAATCTATGTTTGATTCTGTCATATGTGCTCGTGACCGCTGGCTCAAACCAACAGGAGTGATGTAAGTATTGTTTTCTTCCCAGAAACGAAAGAGGGTTTTTTTATTAATTAAAATGTATTGATGTTTTCTACTTCTTGATATGCACCTACTCCTCACTCATTTGAAAAACTAGATATTACTTGAATCTTTTCTTGAGATCGTATTTTTAGTCACTTGTCTAAATATTTGACTTTATTTCTATACTATATATGAAAAATGTGGCTAGTAGTTAGTTAAGAAAGTTGAACTTAGTTATAACTTGTCGTTTGTTTGTCTTTTAAACTAAAAGCTGCACATAAAGCAGAGTATGTTCTTTAGTTTTCAATAGAATAGGGTTAATCAGTATTGTTAAGTGGTGGTTATAGCATTGACAAATCACTATTATTCTGCGATGCAATATTCATTGCAAAATATAGAGCCACTGTAACACTGTTGTAAAACGGAATTTGAACAAACAAACCACTTTTTTCTGCTATCCATGTTTCTGCAATTAACACCACTGAGGTGAATTAAAAAAACAAGCAGACATTAGTTAATAGAATACCGTACGAGAACGTGAACGATAAGCTAATAATTATTTTCTAACTTGAGACTTGAATTGAAAAAAATTAATGAAAGAACACTTTATTTGAGAAAACAAGAAACAAGACGATAGAAAACTCTCCTCCAAGGGTTTGCCCTTCACTATAATAGAGCCACTGCTCTATTCACCTAATGTTAACAAATCTGAATCCTTCCCTTCATAACACAAAACCCCTAACTACCCCAATTTTCACATTACCATGCTATTTTTACATTGACTTAACATGGCATGTTTTGCTTTACCATGCTATTTCCAGCACATTACCAACAGAGATACTGACATGTATATCAATGATTTGGTAAACTGTGAAGGTATCTGGTTCATGAAAATGAGATGGCTCTGATATAAAGATTCATTTTGTTAATGAGCTAAACTTTGGTGGCTTTCGGTGATACATTTGCAATTGATTTAAAAATATTTATTTTGTAGGTATCCTAGTCATGCTCGCATGTGGATGGCACCCATTAGGACTGGGATAGTAGAACAAAAGTTGGGCGATTACCAGTCAGCTATGGGCGATTGGCACAACTTTGTCGATGAAACAAAAGCCTTCTATGGTGTTGATATGAGCACTTTGGCAAAGCCTTTTGCTGAGGAGCAGAGGAAATACTATCTACAGGCAAGTCATATACTTTGTACATCTTAAGTGTACTTTATAGTTTCAGTTACATAGAATTTTTGTTATGGTTGAGAGTATATCAGCCCTACATTATGTGCTGGCTTGTGCAGACACAAAATTGACATGTTCTATGGAGTTGAACAATCCTAATCCCCACATGGAATTCATTTTGGTTTGTTTGTCGTACGGTCCATGCTGTAGTGTATAAAAGTGTAATTGTGCATTCCCAAGAACAAGAACATCAACATGTGTTGGTGGGTCAGGCCACTTGCATGAAAAACCTAATTCAGAAGTACTTCATTCACCCACTCATAAACCAAGTTCAGAAACCGTCTTATAGCCTTTTCATTGTGCAAGAGTGAATCCCCTTGATCCAAAAGCCCTTTCTTCCATGCAATCATGAACTTTGCTGTGGCTATGCAATAATGCAACTGTGTAAGTGGCTTTGGAATTGTATCAAGAGCGCTGTCAAATTGAGGCGTTATAGCACTAATGCTTAAGGGATTTTGATGAATCTGCAATGAATACCTAATTTCTATCCTTGTTCCACTGTAAGGGACATAGCAGCCGCTATTGTATTTTTGGTCAGAGGATGTAGCAGAAATACCAGAAAATAGATAGTTTTAGGGTTTTCCTTTTTATTTAATGATAAAACTAAAGAGTTAGCTTGTATGCTGCACATGACTCCTTTTTAGAATAGTAAAACTGAAGAGTCACACTTCTCTCTTCATGTGTGGTGAAACTGCAACCTTTCAATATGTAAGTGGATTTTTCTCTACCTCAATTTTATTTCAACTAGTCCTCCTCCATCCCAACTTCAACATGACCTCCTCCATTTCCAGTGAGTCTCCGACATATCTCCTTTAGTTTTTATTATGTGTAATACCTTTAAAACTCTCTTTTTTCCACTGTTGCTGCTACATCTGCTTGCTGAAACTGGAATAGCAGCCACAATTTCCCCAATAGCGAAGCTTGGATAGCATTGTGGTTTTCATAGCAGATTCATCATATTTCGCTGTGCTATATTGTTGCTATTTGACAACACTGTTCTGCAGGTCCAATTCATTGGCGAAATAGACAACACTGTTCTATAGGTCCAATTCATTGGTGATATATATATATATATAGCCTAAAACAAAAACATTTCCTATTAGGTGGAGTCTGTTGTATGGATCAAACAACCTCAAAAATGCTTTAGCAGGACAGTGAAGACAATACTTTTAGTCAATTTATACTATACATATATAATGCTAAAAACCAAAATATTGAAGATCATATAAAAATAAAATTAAAGAAATATTCATTAATAAACAGCAGTTGTACTCTTAAGCTAAATACACAATTCAATGACAGCAAAAGTCTAGGAATAAAAGTTGAAGCCTGCGAGCGGTTGAATGATGTCATGGTTGCGAATAGTGTATTGTTAAAAAAACAATTACAACAGAACACAGAGATAGAGCGGAACAGTGATTAGGTAGAAGAACACCGCGAAGATTAGAACAGCATGCGTAAGAACCAAAAATCTGAGCAACAGGGCAGGGGATAACTGAACACCACAGCTCTTTCTTCTACTCAAAAGACTACCAAAAACCGAAAAAAAGCAGTTGAGAACATGTGGAAAATAAATAGAACAGAGTATGCGCTGAACAGAGAAATGTGCGCTAGCTCAGCTGGACTGGGGTTTGTGGTGCAATGCAAGCAAGCAGTAGGTGTAGGTGATTTGTCATAGAGCAGTTGGTGTTGCACGAGGAGACCATTGAACATGAGCTATAGTGCTGCTATCTGACAACACTGTTTCCATATCAAGATAGAGGTTGCAATGGCCGTGAATTGCCTCTACTTTTGGTGACAAATGCAAAAATGCAGTGAAGCTGTTTACATCGATGTGCTGGCTATGTTGCAATACGACACCGCAAAAGCAATTCTGCTGTGTGTTATTGGTGACTATGATCTCACTTTAATGGTGTGATTTGTAGTTTTATGACTTTTATTTACAGGTCAACCTTCATTAATGATACTTCAATGGGTTTTTAGTTTACCCATGCCCAAATCTCATCAGAGGAGACTGTATTATCTACAATTAGATTTATCCAACTTTCTCTTGATGATTTCATTACTGATCATAATGTGTTTTCTGTTCCATATGTAACCAATTTATACATATTTTAATTTCTGTAGACATCGTTGTGGAGCAATCTTCATCCACATCAAGTCATAGGAACTGCTGGTCTAGTAAAGGAAATTGACTGTTTGACTGCCACAGTGGCAGACATAGAGGAAGTTAGATCAAACTTTTCTCTGTCAATAACCACAGAGAACACAAAACTGTGTGGATATGGAGGGTGGTTTGATGTACATTTCCGGGTAAGATGCTCTGACCTTGCATGGGCATTATAGCTATGGAATTTCTTCAATCTTATTGTTTCCTGTTTATGCTTACCAGGGACGAAGTGAGGATCCAGCTGAACATGAGATTGAGTTAACCACCGCTCCTAGTGTAGATTACTGTACACACTGGGGTCAGCAGGTTTGTACAGCATCAATTAGTTGACTTGTTTTATAATTATTTGTCAAATACAGTTTCTTTATTTTGTGAGCAATTTGAATATTAATGAAGGAGCTGATGGTACCTTCAATGAGTTCCATAAATTAGCTGTTCTATTCTATTATTAGAATATAACCTTGTACCTTTATAGATGAGAGACAGGGTTAATGACATTCATACTTTCTGTGATAATTTGGCCCTTTTTCAATCCTGACAATGTATCTGTTCAGTCACCTATAACCTGTGACCTTCATTCTAGTTCAATTGTATGATAATGTTAGTGTAATGTTTTAATCATTGGACAGGTTTTCCTCTTAAATCCTCCTACACATGTGAGTGATGGTGATGACCTAACTGTTAATTTTCTAATGAGTCGCTCGAAGGGAAACCATCGTTTAATGGAGGTTGAGCTTGGCTGTGAGATTCAAAAGCATTCGGGCAAGCTTGCTACACCTTTCAAAAATAAGTACTATATTGAATGA

Protein sequence

>MS.gene067338.t1

MGTSSENAAAGGRGTAVPKEVDYANYFCTYSFLYHQKEMLSDRVRMDAYFNAVFENKHHFKDKVVLDVGAGSGILAIWSAQAGAKKVYAVEATKMSEHARALVKSNNLEQVVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWMAPIRTGIVEQKLGDYQSAMGDWHNFVDETKAFYGVDMSTLAKPFAEEQRKYYLQTSLWSNLHPHQVIGTAGLVKEIDCLTATVADIEEVRSNFSLSITTENTKLCGYGGWFDVHFRGRSEDPAEHEIELTTAPSVDYCTHWGQQVFLLNPPTHVSDGDDLTVNFLMSRSKGNHRLMEVELGCEIQKHSGKLATPFKNKYYIE