Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063817.t1 | XP_003627978.1 | 97.5 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 5.30E-61 | 243.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063817.t1 | Q9SGA6 | 82.5 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 1.8e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063817.t1 | B7FHE5 | 97.5 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 3.8e-61 | 243.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene063817 | 0.835059 | 2.09E-56 | -1.69E-46 |
| MS.gene050320 | MS.gene063817 | 0.854819 | 9.55E-62 | -1.69E-46 |
| MS.gene050838 | MS.gene063817 | 0.83849 | 2.79E-57 | -1.69E-46 |
| MS.gene051330 | MS.gene063817 | 0.805353 | 1.39E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene063817 | 0.851567 | 8.16E-61 | -1.69E-46 |
| MS.gene051748 | MS.gene063817 | 0.860325 | 2.23E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene063817 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene063817 | 0.870605 | 1.29E-66 | -1.69E-46 |
| MS.gene051903 | MS.gene063817 | 0.854021 | 1.62E-61 | -1.69E-46 |
| MS.gene052345 | MS.gene063817 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene063817 | 0.820205 | 7.76E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene063817 | 0.868181 | 7.90E-66 | -1.69E-46 |
| MS.gene053952 | MS.gene063817 | 0.826125 | 3.22E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene063817 | 0.812816 | 3.51E-51 | -1.69E-46 |
| MS.gene056075 | MS.gene063817 | 0.81503 | 1.14E-51 | -1.69E-46 |
| MS.gene056432 | MS.gene063817 | 0.805606 | 1.23E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene063817 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene057052 | MS.gene063817 | 0.827226 | 1.76E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene063817 | 0.897135 | 1.89E-76 | -1.69E-46 |
| MS.gene057234 | MS.gene063817 | 0.806764 | 7.02E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene063817 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene059726 | MS.gene063817 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene063817 | 0.862817 | 3.87E-64 | -1.69E-46 |
| MS.gene061145 | MS.gene063817 | 0.839322 | 1.70E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063817.t1 | MTR_8g040740 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 1.38e-86 | 248 |
| MS.gene063817.t1 | MTR_3g013635 | 89.167 | 120 | 13 | 0 | 1 | 120 | 1 | 120 | 1.91e-82 | 238 |
| MS.gene063817.t1 | MTR_3g013635 | 89.167 | 120 | 13 | 0 | 1 | 120 | 1 | 120 | 1.91e-82 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063817.t1 | AT3G02080 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 9.43e-78 | 226 |
| MS.gene063817.t1 | AT5G61170 | 81.667 | 120 | 22 | 0 | 1 | 120 | 1 | 120 | 1.92e-77 | 225 |
| MS.gene063817.t1 | AT5G15520 | 81.667 | 120 | 22 | 0 | 1 | 120 | 1 | 120 | 1.50e-76 | 223 |
Find 35 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATTCCAAAGGATTTA+TGG | 0.171916 | 8.1:+63280087 | MS.gene063817:CDS |
| AACTGCAAAATTCAAAGAAT+TGG | 0.319374 | 8.1:+63279862 | MS.gene063817:CDS |
| ATAATACCAATCAGGATCAT+AGG | 0.347366 | 8.1:-63279888 | None:intergenic |
| GGCTCCCACCATAAATCCTT+TGG | 0.389483 | 8.1:-63280095 | None:intergenic |
| ATCTACATAAGAGGTGGTCT+TGG | 0.438641 | 8.1:+63280060 | MS.gene063817:CDS |
| ATACCTTGCCAGATCGTTTG+AGG | 0.455890 | 8.1:-63278254 | None:intergenic |
| ATAAGAGGTGGTCTTGGTGT+TGG | 0.461154 | 8.1:+63280066 | MS.gene063817:CDS |
| GTACTCAATTTCAGCTTCCA+TGG | 0.471471 | 8.1:+63280029 | MS.gene063817:intron |
| TGGCTCCCTATGATCCTGAT+TGG | 0.474063 | 8.1:+63279882 | MS.gene063817:CDS |
| GCTCTAACATAATACCAATC+AGG | 0.489642 | 8.1:-63279896 | None:intergenic |
| TTGGTGTTGGTTCATTCCAA+AGG | 0.500013 | 8.1:+63280079 | MS.gene063817:CDS |
| TATGTAGATCTTCCTTGCCA+TGG | 0.510578 | 8.1:-63280046 | None:intergenic |
| GAGGGCGACTTCCATTCCTC+TGG | 0.516528 | 8.1:-63280116 | None:intergenic |
| CACAGTCTTTGAAGAAGCCA+TGG | 0.527750 | 8.1:-63278187 | None:intergenic |
| TCAGCTCACCTCAAACGATC+TGG | 0.531576 | 8.1:+63278246 | MS.gene063817:CDS |
| TAATACCAATCAGGATCATA+GGG | 0.537599 | 8.1:-63279887 | None:intergenic |
| CAATTTCAGCTTCCATGGCA+AGG | 0.544710 | 8.1:+63280034 | MS.gene063817:intron |
| GCAAGGAAGATCTACATAAG+AGG | 0.554507 | 8.1:+63280051 | MS.gene063817:CDS |
| TCGTCACATTCTTCAACAGT+TGG | 0.571334 | 8.1:+63280170 | MS.gene063817:CDS |
| CATTCCAAAGGATTTATGGT+GGG | 0.572274 | 8.1:+63280091 | MS.gene063817:CDS |
| GGATTTATGGTGGGAGCCAG+AGG | 0.572742 | 8.1:+63280100 | MS.gene063817:CDS |
| GATTGGTATTATGTTAGAGC+TGG | 0.573765 | 8.1:+63279899 | MS.gene063817:CDS |
| TTCACCTCACGAATTTGTCA+AGG | 0.581822 | 8.1:+63278218 | MS.gene063817:CDS |
| GAACATGAACCTCATCGAGA+TGG | 0.583253 | 8.1:+63280194 | MS.gene063817:CDS |
| TCATCGAGATGGATACCAAA+GGG | 0.584221 | 8.1:+63280205 | MS.gene063817:CDS |
| GGCTTCTTCAAAGACTGTGA+AGG | 0.599425 | 8.1:+63278191 | MS.gene063817:CDS |
| TATGGTGGGAGCCAGAGGAA+TGG | 0.616028 | 8.1:+63280105 | MS.gene063817:CDS |
| TCATTCCAAAGGATTTATGG+TGG | 0.619819 | 8.1:+63280090 | MS.gene063817:CDS |
| TTGACAAGATCAGTCCACTC+AGG | 0.623178 | 8.1:-63279839 | None:intergenic |
| AATAGTTGGAGCTGCCTGAG+TGG | 0.627148 | 8.1:+63279825 | MS.gene063817:intron |
| TCACCTCAAACGATCTGGCA+AGG | 0.628596 | 8.1:+63278251 | MS.gene063817:CDS |
| CTCATCGAGATGGATACCAA+AGG | 0.653842 | 8.1:+63280204 | MS.gene063817:CDS |
| AGGAAGATCTACATAAGAGG+TGG | 0.658844 | 8.1:+63280054 | MS.gene063817:CDS |
| CTTTGGTATCCATCTCGATG+AGG | 0.659041 | 8.1:-63280203 | None:intergenic |
| TAAGCCTTGACAAATTCGTG+AGG | 0.721929 | 8.1:-63278222 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAGTTTTTTTTTATTAT+AGG | + | chr8.1:63278577-63278596 | MS.gene063817:intron | 10.0% |
| !! | ATATAAGTTGTATATCTAAA+AGG | + | chr8.1:63279148-63279167 | MS.gene063817:intron | 15.0% |
| !!! | CAATTTATTAAACTTTTTGT+TGG | - | chr8.1:63278911-63278930 | None:intergenic | 15.0% |
| !!! | TAAGTTTTATGATACTTTTT+TGG | + | chr8.1:63279037-63279056 | MS.gene063817:intron | 15.0% |
| !!! | TGTTTCAAATTTTTTTCATA+GGG | - | chr8.1:63279271-63279290 | None:intergenic | 15.0% |
| !!! | TTGTTTCAAATTTTTTTCAT+AGG | - | chr8.1:63279272-63279291 | None:intergenic | 15.0% |
| !! | AAATTATCAGTTGTTTATTG+CGG | + | chr8.1:63279207-63279226 | MS.gene063817:intron | 20.0% |
| !! | ACAAAACAAAGAAAAATTGA+AGG | - | chr8.1:63278330-63278349 | None:intergenic | 20.0% |
| !!! | AAAATACAGACTGTTTTTTA+AGG | + | chr8.1:63279310-63279329 | MS.gene063817:intron | 20.0% |
| !!! | ATGCTTAGTTTTTTTTTTGA+AGG | - | chr8.1:63279369-63279388 | None:intergenic | 20.0% |
| !!! | GTTTCAAATTTTTTTCATAG+GGG | - | chr8.1:63279270-63279289 | None:intergenic | 20.0% |
| !!! | TTCTTTTGATTCTAAATAGT+TGG | + | chr8.1:63279811-63279830 | MS.gene063817:intron | 20.0% |
| !!! | TTTCAAATTTTTTTCATAGG+GGG | - | chr8.1:63279269-63279288 | None:intergenic | 20.0% |
| !!! | TTTTCTTTGTTTTGTGAAAT+GGG | + | chr8.1:63278335-63278354 | MS.gene063817:intron | 20.0% |
| !!! | TTTTTCTTTGTTTTGTGAAA+TGG | + | chr8.1:63278334-63278353 | MS.gene063817:intron | 20.0% |
| ! | AACATGATACTTCTAATTCT+TGG | + | chr8.1:63279965-63279984 | MS.gene063817:intron | 25.0% |
| ! | AACTCAACTAAAAAACCAAA+AGG | - | chr8.1:63278817-63278836 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTCAAAGAAT+TGG | + | chr8.1:63279862-63279881 | MS.gene063817:CDS | 25.0% |
| ! | ACTCAACTAAAAAAACCAAA+AGG | - | chr8.1:63278397-63278416 | None:intergenic | 25.0% |
| ! | ACTCAACTAAAAAACCAAAA+GGG | - | chr8.1:63278816-63278835 | None:intergenic | 25.0% |
| ! | CAAATAACAAAACCGAATAA+GGG | - | chr8.1:63279742-63279761 | None:intergenic | 25.0% |
| ! | CTCAACTAAAAAAACCAAAA+GGG | - | chr8.1:63278396-63278415 | None:intergenic | 25.0% |
| ! | TAGATATACAACTTATATGC+AGG | - | chr8.1:63279146-63279165 | None:intergenic | 25.0% |
| ! | TCAAATAACAAAACCGAATA+AGG | - | chr8.1:63279743-63279762 | None:intergenic | 25.0% |
| !! | GTTAGTTATTATTGTTGCTT+AGG | + | chr8.1:63278454-63278473 | MS.gene063817:intron | 25.0% |
| !!! | CAACTAGTTTTATAGGTTTA+GGG | + | chr8.1:63278976-63278995 | MS.gene063817:intron | 25.0% |
| !!! | CTATCTTCAACTAGTTTTAT+AGG | + | chr8.1:63278969-63278988 | MS.gene063817:intron | 25.0% |
| !!! | CTTGTTTTTGGGATTATTTT+TGG | + | chr8.1:63279426-63279445 | MS.gene063817:intron | 25.0% |
| !!! | GTTTGGATTAGCTTATTTTA+AGG | + | chr8.1:63278550-63278569 | MS.gene063817:intron | 25.0% |
| !!! | TACAGTTTAATGCTTGTTTT+TGG | + | chr8.1:63278739-63278758 | MS.gene063817:intron | 25.0% |
| !!! | TCAACTAGTTTTATAGGTTT+AGG | + | chr8.1:63278975-63278994 | MS.gene063817:intron | 25.0% |
| AACACACATGACTCATTAAT+TGG | - | chr8.1:63278883-63278902 | None:intergenic | 30.0% | |
| ACTCTTCAATCAACATCAAA+CGG | - | chr8.1:63279666-63279685 | None:intergenic | 30.0% | |
| ATAATACCAATCAGGATCAT+AGG | - | chr8.1:63279891-63279910 | None:intergenic | 30.0% | |
| ATAGTTTATTGCTGTGGTTT+AGG | + | chr8.1:63278838-63278857 | MS.gene063817:intron | 30.0% | |
| GAGTTTATAGTTTATTGCTG+TGG | + | chr8.1:63278832-63278851 | MS.gene063817:intron | 30.0% | |
| GCTAATCTAAACATGCATTA+AGG | - | chr8.1:63279175-63279194 | None:intergenic | 30.0% | |
| GTAAGTGAAATAACCACAAA+AGG | - | chr8.1:63278722-63278741 | None:intergenic | 30.0% | |
| GTCAGTGAAATAATCACAAA+AGG | - | chr8.1:63279397-63279416 | None:intergenic | 30.0% | |
| TAATACCAATCAGGATCATA+GGG | - | chr8.1:63279890-63279909 | None:intergenic | 30.0% | |
| TATCATAAAACTTATGCCAG+TGG | - | chr8.1:63279031-63279050 | None:intergenic | 30.0% | |
| TTCTTAGATGTGAAGATTTC+TGG | + | chr8.1:63278943-63278962 | MS.gene063817:intron | 30.0% | |
| ! | ATGTTTGTCCACATGATTTT+GGG | + | chr8.1:63279497-63279516 | MS.gene063817:intron | 30.0% |
| ! | CCATTGATTATCGAAAATAC+AGG | + | chr8.1:63278661-63278680 | MS.gene063817:intron | 30.0% |
| ! | CCTGTATTTTCGATAATCAA+TGG | - | chr8.1:63278664-63278683 | None:intergenic | 30.0% |
| ! | TATGTTTGTCCACATGATTT+TGG | + | chr8.1:63279496-63279515 | MS.gene063817:intron | 30.0% |
| !! | ACAGTTTGATGCTTGTTTTT+GGG | + | chr8.1:63279415-63279434 | MS.gene063817:intron | 30.0% |
| !! | TTGTTGCTTAGGATTTGTTA+TGG | + | chr8.1:63278465-63278484 | MS.gene063817:intron | 30.0% |
| !! | TTTAGATTAGCTTGTAGTCA+AGG | + | chr8.1:63279184-63279203 | MS.gene063817:intron | 30.0% |
| AACCAAAAGGGTCATGAAAA+AGG | - | chr8.1:63278384-63278403 | None:intergenic | 35.0% | |
| ACCAAAAGGGTCATGAAAAA+GGG | - | chr8.1:63278383-63278402 | None:intergenic | 35.0% | |
| CATTCCAAAGGATTTATGGT+GGG | + | chr8.1:63280091-63280110 | MS.gene063817:CDS | 35.0% | |
| GATTGGTATTATGTTAGAGC+TGG | + | chr8.1:63279899-63279918 | MS.gene063817:CDS | 35.0% | |
| GCTCTAACATAATACCAATC+AGG | - | chr8.1:63279899-63279918 | None:intergenic | 35.0% | |
| GGTTCATTCCAAAGGATTTA+TGG | + | chr8.1:63280087-63280106 | MS.gene063817:CDS | 35.0% | |
| GTGAAGATAACTACTGTTGT+AGG | + | chr8.1:63278517-63278536 | MS.gene063817:intron | 35.0% | |
| GTTACACCATCAATTAGTGT+TGG | + | chr8.1:63278492-63278511 | MS.gene063817:intron | 35.0% | |
| GTTGATTGAAGAGTCCAAAT+GGG | + | chr8.1:63279672-63279691 | MS.gene063817:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr8.1:63279002-63279021 | None:intergenic | 35.0% | |
| TCACATCCAACACTAATTGA+TGG | - | chr8.1:63278501-63278520 | None:intergenic | 35.0% | |
| TCATGTGGACAAACATAGTT+TGG | - | chr8.1:63279493-63279512 | None:intergenic | 35.0% | |
| TCATTCCAAAGGATTTATGG+TGG | + | chr8.1:63280090-63280109 | MS.gene063817:CDS | 35.0% | |
| TCGATAATCAATGGCATGTT+TGG | - | chr8.1:63278655-63278674 | None:intergenic | 35.0% | |
| TGTTCTGTAGCTGAATCAAA+TGG | + | chr8.1:63278432-63278451 | MS.gene063817:intron | 35.0% | |
| TTGATTGAAGAGTCCAAATG+GGG | + | chr8.1:63279673-63279692 | MS.gene063817:intron | 35.0% | |
| TTGTAGGCTTAATGCATGTT+TGG | + | chr8.1:63278533-63278552 | MS.gene063817:intron | 35.0% | |
| TTTCGAAGGTCTTGAGTAAT+AGG | + | chr8.1:63278688-63278707 | MS.gene063817:intron | 35.0% | |
| ! | AAAATACAGGCAGTTTTCGA+AGG | + | chr8.1:63278674-63278693 | MS.gene063817:intron | 35.0% |
| ! | ATAGGCAATAATGCCTTTTG+TGG | + | chr8.1:63278706-63278725 | MS.gene063817:intron | 35.0% |
| ! | GCTTATTTGAGTTTATCCAC+TGG | + | chr8.1:63279012-63279031 | MS.gene063817:intron | 35.0% |
| ! | GCTTTTCAAAATCCATAGCA+CGG | - | chr8.1:63279538-63279557 | None:intergenic | 35.0% |
| ! | TGTTGATTGAAGAGTCCAAA+TGG | + | chr8.1:63279671-63279690 | MS.gene063817:intron | 35.0% |
| !! | GACAGTTTGATGCTTGTTTT+TGG | + | chr8.1:63279414-63279433 | MS.gene063817:intron | 35.0% |
| !! | TCCACATGATTTTGGGAATT+GGG | + | chr8.1:63279504-63279523 | MS.gene063817:intron | 35.0% |
| ACCCAATTCCCAAAATCATG+TGG | - | chr8.1:63279508-63279527 | None:intergenic | 40.0% | |
| AGGAAGATCTACATAAGAGG+TGG | + | chr8.1:63280054-63280073 | MS.gene063817:CDS | 40.0% | |
| ATCTACATAAGAGGTGGTCT+TGG | + | chr8.1:63280060-63280079 | MS.gene063817:CDS | 40.0% | |
| GCAAGGAAGATCTACATAAG+AGG | + | chr8.1:63280051-63280070 | MS.gene063817:CDS | 40.0% | |
| GTACTCAATTTCAGCTTCCA+TGG | + | chr8.1:63280029-63280048 | MS.gene063817:intron | 40.0% | |
| TAAGCCTTGACAAATTCGTG+AGG | - | chr8.1:63278225-63278244 | None:intergenic | 40.0% | |
| TATGTAGATCTTCCTTGCCA+TGG | - | chr8.1:63280049-63280068 | None:intergenic | 40.0% | |
| TCATCGAGATGGATACCAAA+GGG | + | chr8.1:63280205-63280224 | MS.gene063817:CDS | 40.0% | |
| TCGTCACATTCTTCAACAGT+TGG | + | chr8.1:63280170-63280189 | MS.gene063817:CDS | 40.0% | |
| TGCTCTTGCAAAAATGTGGA+GGG | - | chr8.1:63280137-63280156 | None:intergenic | 40.0% | |
| TTCACCTCACGAATTTGTCA+AGG | + | chr8.1:63278218-63278237 | MS.gene063817:CDS | 40.0% | |
| TTTGCGCTCGAAATCTGATA+AGG | - | chr8.1:63279592-63279611 | None:intergenic | 40.0% | |
| ! | TCTTGGTATTTTGTTGCTGC+TGG | + | chr8.1:63279982-63280001 | MS.gene063817:intron | 40.0% |
| ! | TTATAGGTTTAGGGCCTGTT+TGG | + | chr8.1:63278985-63279004 | MS.gene063817:intron | 40.0% |
| !! | ACCCTTTTTCATGACCCTTT+TGG | + | chr8.1:63278379-63278398 | MS.gene063817:intron | 40.0% |
| !! | CATGATTTTGGGAATTGGGT+TGG | + | chr8.1:63279508-63279527 | MS.gene063817:intron | 40.0% |
| !! | GTCCACATGATTTTGGGAAT+TGG | + | chr8.1:63279503-63279522 | MS.gene063817:intron | 40.0% |
| !! | TTGGTGTTGGTTCATTCCAA+AGG | + | chr8.1:63280079-63280098 | MS.gene063817:CDS | 40.0% |
| ATACCTTGCCAGATCGTTTG+AGG | - | chr8.1:63278257-63278276 | None:intergenic | 45.0% | |
| CAATTTCAGCTTCCATGGCA+AGG | + | chr8.1:63280034-63280053 | MS.gene063817:intron | 45.0% | |
| CCACTGCTCTTGCAAAAATG+TGG | - | chr8.1:63280141-63280160 | None:intergenic | 45.0% | |
| CGAATAAGGGATGACCAATG+CGG | - | chr8.1:63279729-63279748 | None:intergenic | 45.0% | |
| CTCATCGAGATGGATACCAA+AGG | + | chr8.1:63280204-63280223 | MS.gene063817:CDS | 45.0% | |
| CTGCTCTTGCAAAAATGTGG+AGG | - | chr8.1:63280138-63280157 | None:intergenic | 45.0% | |
| CTTTGGTATCCATCTCGATG+AGG | - | chr8.1:63280206-63280225 | None:intergenic | 45.0% | |
| GAACATGAACCTCATCGAGA+TGG | + | chr8.1:63280194-63280213 | MS.gene063817:CDS | 45.0% | |
| GGCTTCTTCAAAGACTGTGA+AGG | + | chr8.1:63278191-63278210 | MS.gene063817:CDS | 45.0% | |
| TTGACAAGATCAGTCCACTC+AGG | - | chr8.1:63279842-63279861 | None:intergenic | 45.0% | |
| ! | ATAAGAGGTGGTCTTGGTGT+TGG | + | chr8.1:63280066-63280085 | MS.gene063817:CDS | 45.0% |
| ! | CCACATTTTTGCAAGAGCAG+TGG | + | chr8.1:63280138-63280157 | MS.gene063817:CDS | 45.0% |
| ! | CGCATTGGTCATCCCTTATT+CGG | + | chr8.1:63279727-63279746 | MS.gene063817:intron | 45.0% |
| AATAGTTGGAGCTGCCTGAG+TGG | + | chr8.1:63279825-63279844 | MS.gene063817:intron | 50.0% | |
| AATGCGGAATGCGTGCAATG+TGG | - | chr8.1:63279713-63279732 | None:intergenic | 50.0% | |
| ACATTGCACGCATTCCGCAT+TGG | + | chr8.1:63279712-63279731 | MS.gene063817:intron | 50.0% | |
| GGCTCCCACCATAAATCCTT+TGG | - | chr8.1:63280098-63280117 | None:intergenic | 50.0% | |
| TCACCTCAAACGATCTGGCA+AGG | + | chr8.1:63278251-63278270 | MS.gene063817:CDS | 50.0% | |
| TCAGCTCACCTCAAACGATC+TGG | + | chr8.1:63278246-63278265 | MS.gene063817:CDS | 50.0% | |
| TGGCTCCCTATGATCCTGAT+TGG | + | chr8.1:63279882-63279901 | MS.gene063817:CDS | 50.0% | |
| ! | GGTTTAGGGCCTGTTTGGAT+TGG | + | chr8.1:63278990-63279009 | MS.gene063817:intron | 50.0% |
| !!! | TGGGTTGGTTTTCCGTGCTA+TGG | + | chr8.1:63279523-63279542 | MS.gene063817:intron | 50.0% |
| TGCAAGCAGCAAGCCCCATT+TGG | - | chr8.1:63279689-63279708 | None:intergenic | 55.0% | |
| ! | GGATTTATGGTGGGAGCCAG+AGG | + | chr8.1:63280100-63280119 | MS.gene063817:CDS | 55.0% |
| ! | TATGGTGGGAGCCAGAGGAA+TGG | + | chr8.1:63280105-63280124 | MS.gene063817:CDS | 55.0% |
| GAGGGCGACTTCCATTCCTC+TGG | - | chr8.1:63280119-63280138 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 63278189 | 63280230 | 63278189 | ID=MS.gene063817 |
| chr8.1 | mRNA | 63278189 | 63280230 | 63278189 | ID=MS.gene063817.t1;Parent=MS.gene063817 |
| chr8.1 | exon | 63278189 | 63278272 | 63278189 | ID=MS.gene063817.t1.exon1;Parent=MS.gene063817.t1 |
| chr8.1 | CDS | 63278189 | 63278272 | 63278189 | ID=cds.MS.gene063817.t1;Parent=MS.gene063817.t1 |
| chr8.1 | exon | 63279830 | 63279920 | 63279830 | ID=MS.gene063817.t1.exon2;Parent=MS.gene063817.t1 |
| chr8.1 | CDS | 63279830 | 63279920 | 63279830 | ID=cds.MS.gene063817.t1;Parent=MS.gene063817.t1 |
| chr8.1 | exon | 63280043 | 63280230 | 63280043 | ID=MS.gene063817.t1.exon3;Parent=MS.gene063817.t1 |
| chr8.1 | CDS | 63280043 | 63280230 | 63280043 | ID=cds.MS.gene063817.t1;Parent=MS.gene063817.t1 |
| Gene Sequence |
| Protein sequence |
