AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70305


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70305.t1 MTR_8g092040 97.541 244 6 0 1 244 1 244 5.83e-170 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70305.t1 AT2G21870 68.852 244 72 2 1 244 1 240 9.88e-117 333
MS.gene70305.t1 AT2G21870 69.058 223 66 1 1 223 1 220 1.84e-107 309

Find 61 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTATCATTTCTCAAT+AGG 0.249875 4.1:+9382417 None:intergenic
AAATGAGGAACAAACCAATT+TGG 0.277914 4.1:+9384894 None:intergenic
TTTCTTATCATTTCTCAATA+GGG 0.290599 4.1:+9382418 None:intergenic
GCAACGGGAGTTTGCTGTTC+CGG 0.291400 4.1:-9384361 MS.gene70305:CDS
GGAACAAACCAATTTGGATT+TGG 0.309292 4.1:+9384900 None:intergenic
CCTCGCATCCAAATCCAAAT+TGG 0.317568 4.1:-9384908 MS.gene70305:intron
CGGTTCGCCACTTTGCTAAA+GGG 0.331571 4.1:-9384341 MS.gene70305:CDS
GAAAGGAATGGACCTTCTTT+TGG 0.332132 4.1:-9382399 MS.gene70305:CDS
GGCTTTAATGTTTGATGCAT+TGG 0.345705 4.1:-9382468 MS.gene70305:CDS
GTCCGAACTTCCTGCCCTTA+AGG 0.348865 4.1:-9384310 MS.gene70305:CDS
CCGGTTCGCCACTTTGCTAA+AGG 0.349850 4.1:-9384342 MS.gene70305:CDS
CTACTCTTGGTATAGCTGTA+TGG 0.353049 4.1:-9384399 MS.gene70305:intron
CTTGGTTCTTATTTCCTTCA+AGG 0.354224 4.1:+9383649 None:intergenic
CGGTCAAATGCTTCTGCAAC+GGG 0.382485 4.1:-9384376 MS.gene70305:CDS
AGACTGCCATCGGAATATTA+AGG 0.383428 4.1:-9383989 MS.gene70305:CDS
GGAACTCACCGTCTCCCTTA+AGG 0.389313 4.1:+9384295 None:intergenic
TCCCTTAAGGGCAGGAAGTT+CGG 0.389587 4.1:+9384308 None:intergenic
GCAGCTGGAGGAGTTGAAAA+AGG 0.399996 4.1:-9381723 MS.gene70305:CDS
GAAACAGCAGCTGGATCCTC+TGG 0.403842 4.1:+9383945 None:intergenic
AAAAGATAAGTTCGAGCATC+AGG 0.404959 4.1:+9383674 None:intergenic
TCCGAACTTCCTGCCCTTAA+GGG 0.407807 4.1:-9384309 MS.gene70305:CDS
TCCAGCTGCTCTTCGTACTT+TGG 0.409891 4.1:+9381764 None:intergenic
CAACTCCTCCAGCTGCGCTT+TGG 0.413594 4.1:+9381730 None:intergenic
CCATTTCAGGGAGGAATTCA+AGG 0.418093 4.1:-9381309 MS.gene70305:intron
GAACTCACCGTCTCCCTTAA+GGG 0.425131 4.1:+9384296 None:intergenic
TAAAATAGCCAAAGCGCAGC+TGG 0.425620 4.1:-9381738 MS.gene70305:CDS
TGCATTGGAGAAAATTGAAA+AGG 0.441090 4.1:-9382453 MS.gene70305:CDS
GGCAGGAAGTTCGGACCCTT+CGG 0.446173 4.1:+9384317 None:intergenic
TTCTTATCATTTCTCAATAG+GGG 0.468292 4.1:+9382419 None:intergenic
CCTTTAGCAAAGTGGCGAAC+CGG 0.468347 4.1:+9384342 None:intergenic
ACGTCAAAACTTTGGACATC+CGG 0.475716 4.1:-9381268 MS.gene70305:CDS
AGAGGTCTTACAGATGATCT+TGG 0.479321 4.1:-9382497 MS.gene70305:CDS
AGCTGGATCCTCTGGAGCTA+TGG 0.481115 4.1:+9383953 None:intergenic
GGCGGTTGACGTCAAAACTT+TGG 0.482257 4.1:-9381276 MS.gene70305:CDS
GCCAAAGTACGAAGAGCAGC+TGG 0.499498 4.1:-9381765 MS.gene70305:CDS
CAATGGAAACTCAAAAGAAA+AGG 0.507343 4.1:-9381688 MS.gene70305:intron
CTCCTTCCTTAATATTCCGA+TGG 0.511981 4.1:+9383983 None:intergenic
CACTTTGCTAAAGGGTCCGA+AGG 0.513405 4.1:-9384333 MS.gene70305:CDS
CAGGGCAAACTTGTTGTCAG+TGG 0.523119 4.1:-9383741 MS.gene70305:CDS
TATCAAACTCTGCCAAAAGA+AGG 0.529881 4.1:+9382387 None:intergenic
AAAGGATGCTGTTGAGGCAA+TGG 0.541346 4.1:-9381705 MS.gene70305:CDS
GAGAAATGATAAGAAAGGAA+TGG 0.544368 4.1:-9382411 MS.gene70305:CDS
TCACCGTCTCCCTTAAGGGC+AGG 0.548905 4.1:+9384300 None:intergenic
GCATATTGAGAAACAGCAGC+TGG 0.566573 4.1:+9383936 None:intergenic
GCGGTCAAATGCTTCTGCAA+CGG 0.569422 4.1:-9384377 MS.gene70305:CDS
AACAAATTTGAGACTGCCAT+CGG 0.570816 4.1:-9383999 MS.gene70305:CDS
TACAGATGATCTTGGAGCAG+AGG 0.572998 4.1:-9382489 MS.gene70305:CDS
TGCTGTTTCTCAATATGCGA+AGG 0.586233 4.1:-9383931 MS.gene70305:CDS
CTTCGGACCCTTTAGCAAAG+TGG 0.597464 4.1:+9384334 None:intergenic
GTCAGTGGCTCAAGATGTCA+AGG 0.601887 4.1:-9383726 MS.gene70305:CDS
CCAATTTGGATTTGGATGCG+AGG 0.606244 4.1:+9384908 None:intergenic
GAAGATCACCATAGCTCCAG+AGG 0.616565 4.1:-9383961 MS.gene70305:CDS
CTTCCTGCCCTTAAGGGAGA+CGG 0.620584 4.1:-9384303 MS.gene70305:intron
TGCCATCGGAATATTAAGGA+AGG 0.622802 4.1:-9383985 MS.gene70305:CDS
GGAATTCAAGGATGAGCCTG+CGG 0.631780 4.1:-9381297 MS.gene70305:CDS
CTATTGAGAAATGATAAGAA+AGG 0.632519 4.1:-9382416 MS.gene70305:CDS
AATAGCCAAAGCGCAGCTGG+AGG 0.651823 4.1:-9381735 MS.gene70305:CDS
ATTCAAGGATGAGCCTGCGG+CGG 0.666945 4.1:-9381294 MS.gene70305:CDS
GAGGCGTGAAGCGAGTGCCA+TGG 0.683570 4.1:+9384927 None:intergenic
ACTTTGCTAAAGGGTCCGAA+GGG 0.685539 4.1:-9384332 MS.gene70305:CDS
CTCTTGGTATAGCTGTATGG+CGG 0.687511 4.1:-9384396 MS.gene70305:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAACAATTC+AGG + chr4.1:9383478-9383497 None:intergenic 10.0%
!! ATAATAATAATAACAATTCA+GGG + chr4.1:9383477-9383496 None:intergenic 10.0%
!! TATAATAAAAAAAAAAAAGC+AGG + chr4.1:9384616-9384635 None:intergenic 10.0%
!! TTTATTAAATTAAATGTGTT+GGG - chr4.1:9381704-9381723 MS.gene70305:CDS 10.0%
!!! AAAAAATAATTTTTATGATG+AGG + chr4.1:9381609-9381628 None:intergenic 10.0%
!!! GATTTTTAAATATTATTTTC+TGG - chr4.1:9383934-9383953 MS.gene70305:CDS 10.0%
!!! TATAATTACTTTACTTATTT+TGG - chr4.1:9384325-9384344 MS.gene70305:CDS 10.0%
!! AAAAAGAATAGAAATGAAAT+CGG + chr4.1:9381332-9381351 None:intergenic 15.0%
!! AGGAAAAATAAATCATATAA+TGG + chr4.1:9384846-9384865 None:intergenic 15.0%
!! GATAAATAATTAAACACTAT+AGG + chr4.1:9384277-9384296 None:intergenic 15.0%
!! GTTTATTAAATTAAATGTGT+TGG - chr4.1:9381703-9381722 MS.gene70305:CDS 15.0%
!!! TGTTTCAAATCAAATATTTT+AGG - chr4.1:9382980-9382999 MS.gene70305:intron 15.0%
!! AATAACCTAATTAGACAAAA+GGG + chr4.1:9381520-9381539 None:intergenic 20.0%
!! ATATATACAAATGAGAGAAA+AGG - chr4.1:9383574-9383593 MS.gene70305:intron 20.0%
!! ATTTAAATGTTTACTTTGCT+AGG - chr4.1:9384245-9384264 MS.gene70305:intron 20.0%
!! ATTTCTATTGAAAATCAAAG+TGG + chr4.1:9382068-9382087 None:intergenic 20.0%
!! TAATAACCTAATTAGACAAA+AGG + chr4.1:9381521-9381540 None:intergenic 20.0%
!! TATATACAAATGAGAGAAAA+GGG - chr4.1:9383575-9383594 MS.gene70305:intron 20.0%
!! TTTAAATGTTTACTTTGCTA+GGG - chr4.1:9384246-9384265 MS.gene70305:intron 20.0%
!! TTTCTTATCATTTCTCAATA+GGG + chr4.1:9383766-9383785 None:intergenic 20.0%
!!! AAATTAACTGATTTTTCCAT+TGG - chr4.1:9381462-9381481 MS.gene70305:intron 20.0%
!!! ATATTTTTTGTTTCGAATAG+TGG + chr4.1:9381437-9381456 None:intergenic 20.0%
!!! GAAACTGAATATAATTTTAC+TGG - chr4.1:9381664-9381683 MS.gene70305:intron 20.0%
!!! TATATTATATGAGTATCGTA+GGG - chr4.1:9381933-9381952 MS.gene70305:intron 20.0%
!!! TTATATTATATGAGTATCGT+AGG - chr4.1:9381932-9381951 MS.gene70305:intron 20.0%
! AAAATACAAGTCCAAAGTAA+AGG + chr4.1:9381912-9381931 None:intergenic 25.0%
! AAAATAGAACATCACATACT+TGG + chr4.1:9382553-9382572 None:intergenic 25.0%
! AAAGATTACGAGATATAAGT+TGG + chr4.1:9382353-9382372 None:intergenic 25.0%
! AAATACAAGTCCAAAGTAAA+GGG + chr4.1:9381911-9381930 None:intergenic 25.0%
! AACTAAATTGAATCCACAAA+AGG + chr4.1:9384198-9384217 None:intergenic 25.0%
! AATCGAGATTTAGGAAATAT+GGG - chr4.1:9383270-9383289 MS.gene70305:intron 25.0%
! AGACTATGATAAAAACAACA+AGG + chr4.1:9382314-9382333 None:intergenic 25.0%
! ATTATTTACTAGTTGCATTG+CGG - chr4.1:9381636-9381655 MS.gene70305:intron 25.0%
! CAACAACAAAAAAAATCAGT+AGG + chr4.1:9381742-9381761 None:intergenic 25.0%
! CTATTGAGAAATGATAAGAA+AGG - chr4.1:9383765-9383784 MS.gene70305:intron 25.0%
! CTTTCTTATCATTTCTCAAT+AGG + chr4.1:9383767-9383786 None:intergenic 25.0%
! GAAAAAAGAAGAGAGAATAT+AGG - chr4.1:9383109-9383128 MS.gene70305:intron 25.0%
! GATGCTGAAAAACATTTATT+TGG - chr4.1:9382151-9382170 MS.gene70305:intron 25.0%
! TATACCAAGAGTAGAAAATT+GGG + chr4.1:9381776-9381795 None:intergenic 25.0%
! TATCATTTCAATCGAGATTT+AGG - chr4.1:9383261-9383280 MS.gene70305:intron 25.0%
! TATGTTGTCATGCAATTTAA+CGG - chr4.1:9383890-9383909 MS.gene70305:intron 25.0%
! TGATAAAAACAACAAGGTAA+AGG + chr4.1:9382308-9382327 None:intergenic 25.0%
! TGATTTATGCAAAGAAGAAA+AGG - chr4.1:9382037-9382056 MS.gene70305:intron 25.0%
! TGGAATATATGAATTTCACA+TGG - chr4.1:9384734-9384753 MS.gene70305:intron 25.0%
! TTCTTATCATTTCTCAATAG+GGG + chr4.1:9383765-9383784 None:intergenic 25.0%
!! TATTTTGCCTCCTAATAAAA+GGG + chr4.1:9384533-9384552 None:intergenic 25.0%
!! TTATTCCCTTTTGTCTAATT+AGG - chr4.1:9381512-9381531 MS.gene70305:intron 25.0%
!! TTTCCAAATATTGCATTTTG+TGG - chr4.1:9384114-9384133 MS.gene70305:intron 25.0%
!!! AATTTCAGTATTTTTGACGA+AGG + chr4.1:9382951-9382970 None:intergenic 25.0%
!!! ATTTTTCTACTTATCGATTG+AGG - chr4.1:9382828-9382847 MS.gene70305:intron 25.0%
!!! TCTTCTTTTTTCTGTTTCAT+CGG + chr4.1:9383101-9383120 None:intergenic 25.0%
!!! TTATTTTGCCTCCTAATAAA+AGG + chr4.1:9384534-9384553 None:intergenic 25.0%
!!! TTTTTCTACTTATCGATTGA+GGG - chr4.1:9382829-9382848 MS.gene70305:intron 25.0%
AAAAAAAAAGCAGGAGAATC+AGG + chr4.1:9384607-9384626 None:intergenic 30.0%
AAAAAAAAGCAGGAGAATCA+GGG + chr4.1:9384606-9384625 None:intergenic 30.0%
AAATGAGGAACAAACCAATT+TGG + chr4.1:9381290-9381309 None:intergenic 30.0%
AATACAAGTCCAAAGTAAAG+GGG + chr4.1:9381910-9381929 None:intergenic 30.0%
AATCAGTACCATAAGAAAGA+AGG - chr4.1:9383072-9383091 MS.gene70305:intron 30.0%
AGAACCACATGTTTAAAAGA+AGG + chr4.1:9383410-9383429 None:intergenic 30.0%
AGCTTGAAAAGATACAACAT+AGG + chr4.1:9383846-9383865 None:intergenic 30.0%
AGTAGTATAAAATGTCCCTA+TGG - chr4.1:9384701-9384720 MS.gene70305:intron 30.0%
ATCGAGATTTAGGAAATATG+GGG - chr4.1:9383271-9383290 MS.gene70305:intron 30.0%
ATGCCAGAAACTCTAATATT+GGG - chr4.1:9381374-9381393 MS.gene70305:intron 30.0%
ATGTTGTCATGCAATTTAAC+GGG - chr4.1:9383891-9383910 MS.gene70305:intron 30.0%
ATTCCAAATTCAAAAGCCAT+AGG + chr4.1:9384720-9384739 None:intergenic 30.0%
ATTTGAGCAGAATGAATTAC+TGG - chr4.1:9384300-9384319 MS.gene70305:intron 30.0%
CAACAAAAAAAATCAGTAGG+TGG + chr4.1:9381739-9381758 None:intergenic 30.0%
CAATCGAGATTTAGGAAATA+TGG - chr4.1:9383269-9383288 MS.gene70305:intron 30.0%
CAATGGAAACTCAAAAGAAA+AGG - chr4.1:9384493-9384512 MS.gene70305:intron 30.0%
CAGAAGTTAGAACTTAGAAA+TGG + chr4.1:9384569-9384588 None:intergenic 30.0%
CCTATTTCCAACAAATCAAT+TGG + chr4.1:9384761-9384780 None:intergenic 30.0%
CTATACCAAGAGTAGAAAAT+TGG + chr4.1:9381777-9381796 None:intergenic 30.0%
CTATCTTCAAAGTTAGAATC+AGG + chr4.1:9384683-9384702 None:intergenic 30.0%
GAGAAATGATAAGAAAGGAA+TGG - chr4.1:9383770-9383789 MS.gene70305:intron 30.0%
GAGAATATAGGATAAGCTTA+AGG - chr4.1:9383121-9383140 MS.gene70305:intron 30.0%
GAGAATGAATAGAAGAAATG+AGG + chr4.1:9381305-9381324 None:intergenic 30.0%
GCACATCATCTAGTTAAAAA+TGG + chr4.1:9382581-9382600 None:intergenic 30.0%
GTTTGAAAAGGACAACTAAT+CGG + chr4.1:9383531-9383550 None:intergenic 30.0%
TCACATTTGCTCATATATCT+GGG - chr4.1:9383645-9383664 MS.gene70305:intron 30.0%
TCATCAATTATCATTAGCCA+TGG - chr4.1:9381583-9381602 MS.gene70305:intron 30.0%
TCTCGATTGAAATGATATCA+TGG + chr4.1:9383258-9383277 None:intergenic 30.0%
TGCATTGGAGAAAATTGAAA+AGG - chr4.1:9383728-9383747 MS.gene70305:CDS 30.0%
TTCCAAATTCAAAAGCCATA+GGG + chr4.1:9384719-9384738 None:intergenic 30.0%
TTTGAAAAGGACAACTAATC+GGG + chr4.1:9383530-9383549 None:intergenic 30.0%
TTTGAGCAGAATGAATTACT+GGG - chr4.1:9384301-9384320 MS.gene70305:intron 30.0%
! AACTTATCTTTTGACCTTGA+AGG - chr4.1:9382518-9382537 MS.gene70305:intron 30.0%
! GATCATTTTACAACAGAATG+AGG + chr4.1:9383979-9383998 None:intergenic 30.0%
! TAATTTTTATGATGAGGCCA+TGG + chr4.1:9381603-9381622 None:intergenic 30.0%
! TCGAGTCTTGTAATTTATGA+AGG - chr4.1:9384067-9384086 MS.gene70305:intron 30.0%
!! ATTTTGTTGTGCATTCTTCA+GGG - chr4.1:9382422-9382441 MS.gene70305:CDS 30.0%
!! CCAATTGATTTGTTGGAAAT+AGG - chr4.1:9384758-9384777 MS.gene70305:intron 30.0%
!! TCAGGGTATTCATAATTTTG+AGG + chr4.1:9383460-9383479 None:intergenic 30.0%
!! TTTGATTTGAAACACACTAC+TGG + chr4.1:9382974-9382993 None:intergenic 30.0%
!!! TTGAATGCTAGCTTTTGTTT+CGG - chr4.1:9384220-9384239 MS.gene70305:intron 30.0%
AAAAGATAAGTTCGAGCATC+AGG + chr4.1:9382510-9382529 None:intergenic 35.0%
AAATGTTTACTTTGCTAGGG+AGG - chr4.1:9384249-9384268 MS.gene70305:intron 35.0%
AAGAATGCACAACAAAATGC+AGG + chr4.1:9382420-9382439 None:intergenic 35.0%
ACAGACACAACTACATTAAG+TGG + chr4.1:9383378-9383397 None:intergenic 35.0%
AGATTTAGGAAATATGGGGA+AGG - chr4.1:9383275-9383294 MS.gene70305:intron 35.0%
AGTGTCTCTAACCATAACAA+TGG + chr4.1:9384785-9384804 None:intergenic 35.0%
ATCGGTTACCTTCTTTCTTA+TGG + chr4.1:9383083-9383102 None:intergenic 35.0%
CAGCCACAAAATGCAATATT+TGG + chr4.1:9384120-9384139 None:intergenic 35.0%
CATGCCAGAAACTCTAATAT+TGG - chr4.1:9381373-9381392 MS.gene70305:intron 35.0%
CGGGATACTTTCTATATGTT+TGG - chr4.1:9383910-9383929 MS.gene70305:CDS 35.0%
CTGGCATGAAAATCAGAAAT+TGG + chr4.1:9381361-9381380 None:intergenic 35.0%
GATCCCAATATTAGAGTTTC+TGG + chr4.1:9381380-9381399 None:intergenic 35.0%
GGAACAAACCAATTTGGATT+TGG + chr4.1:9381284-9381303 None:intergenic 35.0%
GTCACATTTGCTCATATATC+TGG - chr4.1:9383644-9383663 MS.gene70305:intron 35.0%
TACCTTTCTTCTCATTGTCA+AGG - chr4.1:9382747-9382766 MS.gene70305:intron 35.0%
TATCAAACTCTGCCAAAAGA+AGG + chr4.1:9383797-9383816 None:intergenic 35.0%
TCAAAGGGTGAAAAAACAAC+AGG + chr4.1:9384358-9384377 None:intergenic 35.0%
TCTTAACACTCGAAATCCAA+TGG + chr4.1:9381481-9381500 None:intergenic 35.0%
TGGAAATAGGACCATTGTTA+TGG - chr4.1:9384771-9384790 MS.gene70305:intron 35.0%
TTCGAATTCCAAGTCTAAGA+TGG + chr4.1:9384386-9384405 None:intergenic 35.0%
! AACAAATTTGAGACTGCCAT+CGG - chr4.1:9382182-9382201 MS.gene70305:intron 35.0%
! AACGCCTTCTTTTAAACATG+TGG - chr4.1:9383403-9383422 MS.gene70305:intron 35.0%
! ATCTGGGTACATTTCTTTTC+AGG - chr4.1:9383661-9383680 MS.gene70305:CDS 35.0%
! CGAATAGTGGAATTGAGAAT+CGG + chr4.1:9381424-9381443 None:intergenic 35.0%
! CTTGGTTCTTATTTCCTTCA+AGG + chr4.1:9382535-9382554 None:intergenic 35.0%
! GGCTTTAATGTTTGATGCAT+TGG - chr4.1:9383713-9383732 MS.gene70305:CDS 35.0%
!! ACATGGACCAATTGATTTGT+TGG - chr4.1:9384751-9384770 MS.gene70305:intron 35.0%
!! AGTATTTTTGACGAAGGTGT+GGG + chr4.1:9382945-9382964 None:intergenic 35.0%
!! CATTTTGTTGTGCATTCTTC+AGG - chr4.1:9382421-9382440 MS.gene70305:CDS 35.0%
!!! GGTACTGATTGTTTTGACTT+GGG + chr4.1:9383062-9383081 None:intergenic 35.0%
!!! GTTGTTTTTTCACCCTTTGA+TGG - chr4.1:9384358-9384377 MS.gene70305:CDS 35.0%
!!! TGGTACTGATTGTTTTGACT+TGG + chr4.1:9383063-9383082 None:intergenic 35.0%
AAACACCTTTGTTAAGCGCA+TGG - chr4.1:9384638-9384657 MS.gene70305:intron 40.0%
AAGGGTGAAAAAACAACAGG+AGG + chr4.1:9384355-9384374 None:intergenic 40.0%
AAGTACCATGCGCTTAACAA+AGG + chr4.1:9384646-9384665 None:intergenic 40.0%
ACAGATACAGAGTGATTAGG+AGG + chr4.1:9382905-9382924 None:intergenic 40.0%
ACGTCAAAACTTTGGACATC+CGG - chr4.1:9384913-9384932 MS.gene70305:CDS 40.0%
AGACTGCCATCGGAATATTA+AGG - chr4.1:9382192-9382211 MS.gene70305:intron 40.0%
AGAGGTCTTACAGATGATCT+TGG - chr4.1:9383684-9383703 MS.gene70305:CDS 40.0%
ATATGGGGAAGGATTTAGCA+TGG - chr4.1:9383286-9383305 MS.gene70305:intron 40.0%
CACCTTGACAATGAGAAGAA+AGG + chr4.1:9382752-9382771 None:intergenic 40.0%
CAGATACAGAGTGATTAGGA+GGG + chr4.1:9382904-9382923 None:intergenic 40.0%
CATCTCCAGTGTTAAATCTC+CGG - chr4.1:9383204-9383223 MS.gene70305:intron 40.0%
CTACTCTTGGTATAGCTGTA+TGG - chr4.1:9381782-9381801 MS.gene70305:CDS 40.0%
CTCCTTCCTTAATATTCCGA+TGG + chr4.1:9382201-9382220 None:intergenic 40.0%
GAACACCATAGAATCTAGTG+AGG - chr4.1:9383312-9383331 MS.gene70305:intron 40.0%
GCACGCACATAAGTTTGAAA+AGG + chr4.1:9383543-9383562 None:intergenic 40.0%
GTTGAAAAAGGATGCTGTTG+AGG - chr4.1:9384470-9384489 MS.gene70305:intron 40.0%
TATAGTCTATCCTCTATGCG+TGG - chr4.1:9384158-9384177 MS.gene70305:intron 40.0%
TCTTAAGGTGGTGTCTAACA+TGG - chr4.1:9382777-9382796 MS.gene70305:intron 40.0%
TGAAGCCTCACTAGATTCTA+TGG + chr4.1:9383320-9383339 None:intergenic 40.0%
TGCCATCGGAATATTAAGGA+AGG - chr4.1:9382196-9382215 MS.gene70305:intron 40.0%
TGGTGTCTAACATGGACAAT+CGG - chr4.1:9382785-9382804 MS.gene70305:intron 40.0%
TTTGCCTCCTAATAAAAGGG+TGG + chr4.1:9384530-9384549 None:intergenic 40.0%
! GAAAGGAATGGACCTTCTTT+TGG - chr4.1:9383782-9383801 MS.gene70305:intron 40.0%
! GTCCCTATGGCTTTTGAATT+TGG - chr4.1:9384714-9384733 MS.gene70305:intron 40.0%
! GTGGTCAATTGTTCCTTTTG+TGG - chr4.1:9384182-9384201 MS.gene70305:intron 40.0%
! TCTAAGATGGCACCATCAAA+GGG + chr4.1:9384373-9384392 None:intergenic 40.0%
! TGTCAAGGTGCTTTCTCTTA+AGG - chr4.1:9382762-9382781 MS.gene70305:intron 40.0%
! TGTGCCCAATTTTCTACTCT+TGG - chr4.1:9381769-9381788 MS.gene70305:CDS 40.0%
! TTTCCTTGTCTGCCATTTCA+GGG - chr4.1:9384860-9384879 MS.gene70305:intron 40.0%
! TTTGTGTCTGAGACAGTGAT+AGG - chr4.1:9381958-9381977 MS.gene70305:intron 40.0%
!! CAGTATTTTTGACGAAGGTG+TGG + chr4.1:9382946-9382965 None:intergenic 40.0%
!! GGAGAAAACTATGGTGTTGT+GGG + chr4.1:9382877-9382896 None:intergenic 40.0%
!! GGTACATTTCTTTTCAGGAG+AGG - chr4.1:9383666-9383685 MS.gene70305:CDS 40.0%
!! GTATTTTTGACGAAGGTGTG+GGG + chr4.1:9382944-9382963 None:intergenic 40.0%
!! TATTTTTGACGAAGGTGTGG+GGG + chr4.1:9382943-9382962 None:intergenic 40.0%
!! TGCTGTTTCTCAATATGCGA+AGG - chr4.1:9382250-9382269 MS.gene70305:intron 40.0%
!! TTTTCCTTGTCTGCCATTTC+AGG - chr4.1:9384859-9384878 MS.gene70305:intron 40.0%
AAAGGATGCTGTTGAGGCAA+TGG - chr4.1:9384476-9384495 MS.gene70305:intron 45.0%
ACAGAGTGATTAGGAGGGAA+GGG + chr4.1:9382899-9382918 None:intergenic 45.0%
ACATGGACAATCGGTCTTTG+TGG - chr4.1:9382794-9382813 MS.gene70305:intron 45.0%
ACTTTGCTAAAGGGTCCGAA+GGG - chr4.1:9381849-9381868 MS.gene70305:intron 45.0%
ATGCAGACATCTCTTGCAAC+AGG - chr4.1:9383604-9383623 MS.gene70305:intron 45.0%
CCAATTTGGATTTGGATGCG+AGG + chr4.1:9381276-9381295 None:intergenic 45.0%
CCATTTCAGGGAGGAATTCA+AGG - chr4.1:9384872-9384891 MS.gene70305:intron 45.0%
CCTAATAAAAGGGTGGTGTG+AGG + chr4.1:9384523-9384542 None:intergenic 45.0%
CCTCGCATCCAAATCCAAAT+TGG - chr4.1:9381273-9381292 MS.gene70305:CDS 45.0%
CCTTGAATTCCTCCCTGAAA+TGG + chr4.1:9384875-9384894 None:intergenic 45.0%
CTCTTGGTATAGCTGTATGG+CGG - chr4.1:9381785-9381804 MS.gene70305:CDS 45.0%
GCATATTGAGAAACAGCAGC+TGG + chr4.1:9382248-9382267 None:intergenic 45.0%
GGGACAGATACAGAGTGATT+AGG + chr4.1:9382908-9382927 None:intergenic 45.0%
TAAAATAGCCAAAGCGCAGC+TGG - chr4.1:9384443-9384462 MS.gene70305:intron 45.0%
TACAGAGTGATTAGGAGGGA+AGG + chr4.1:9382900-9382919 None:intergenic 45.0%
TACAGATGATCTTGGAGCAG+AGG - chr4.1:9383692-9383711 MS.gene70305:CDS 45.0%
TACATTCATAACCCCAACGC+CGG - chr4.1:9383169-9383188 MS.gene70305:intron 45.0%
TGAGACAGTGATAGGCATGT+TGG - chr4.1:9381966-9381985 MS.gene70305:intron 45.0%
TGGTCCTCAAGTTCTGTTGT+TGG + chr4.1:9383238-9383257 None:intergenic 45.0%
TTTAACACTGGAGATGCTCC+AGG + chr4.1:9383200-9383219 None:intergenic 45.0%
! CAAGGTGCTTTCTCTTAAGG+TGG - chr4.1:9382765-9382784 MS.gene70305:intron 45.0%
! CACACCACCCTTTTATTAGG+AGG - chr4.1:9384523-9384542 MS.gene70305:intron 45.0%
! CCTCACACCACCCTTTTATT+AGG - chr4.1:9384520-9384539 MS.gene70305:intron 45.0%
! CTTGCAACAGGTGTTACATC+AGG - chr4.1:9383616-9383635 MS.gene70305:intron 45.0%
! GGGAGAAAACTATGGTGTTG+TGG + chr4.1:9382878-9382897 None:intergenic 45.0%
! GTCTAAGATGGCACCATCAA+AGG + chr4.1:9384374-9384393 None:intergenic 45.0%
! TTTGTGGCTGCTGCTTGTTT+GGG - chr4.1:9384130-9384149 MS.gene70305:intron 45.0%
!! TGATGGTGCCATCTTAGACT+TGG - chr4.1:9384375-9384394 MS.gene70305:CDS 45.0%
!! TTTTGTGGCTGCTGCTTGTT+TGG - chr4.1:9384129-9384148 MS.gene70305:intron 45.0%
!!! CTGATTGTTTTGACTTGGGC+AGG + chr4.1:9383058-9383077 None:intergenic 45.0%
AGCAGGAGAATCAGGGAGAA+CGG + chr4.1:9384599-9384618 None:intergenic 50.0%
ATTGACCACTCCACGCATAG+AGG + chr4.1:9384171-9384190 None:intergenic 50.0%
CACTTTGCTAAAGGGTCCGA+AGG - chr4.1:9381848-9381867 MS.gene70305:intron 50.0%
CAGAGTGATTAGGAGGGAAG+GGG + chr4.1:9382898-9382917 None:intergenic 50.0%
CAGTGTTAAATCTCCGGCAC+TGG - chr4.1:9383210-9383229 MS.gene70305:intron 50.0%
CCTTTAGCAAAGTGGCGAAC+CGG + chr4.1:9381842-9381861 None:intergenic 50.0%
CGGTCAAATGCTTCTGCAAC+GGG - chr4.1:9381805-9381824 MS.gene70305:intron 50.0%
CGGTGAGTTCCCCTTTACTT+TGG - chr4.1:9381898-9381917 MS.gene70305:intron 50.0%
CTTCGGACCCTTTAGCAAAG+TGG + chr4.1:9381850-9381869 None:intergenic 50.0%
GAACTCACCGTCTCCCTTAA+GGG + chr4.1:9381888-9381907 None:intergenic 50.0%
GAAGATCACCATAGCTCCAG+AGG - chr4.1:9382220-9382239 MS.gene70305:intron 50.0%
GAGGGAAGGGGAGAAAACTA+TGG + chr4.1:9382886-9382905 None:intergenic 50.0%
GCAGCTGGAGGAGTTGAAAA+AGG - chr4.1:9384458-9384477 MS.gene70305:intron 50.0%
GCGGTCAAATGCTTCTGCAA+CGG - chr4.1:9381804-9381823 MS.gene70305:intron 50.0%
GGAATTCAAGGATGAGCCTG+CGG - chr4.1:9384884-9384903 MS.gene70305:intron 50.0%
GGCGGTTGACGTCAAAACTT+TGG - chr4.1:9384905-9384924 MS.gene70305:intron 50.0%
GGGGAAGGATTTAGCATGGA+AGG - chr4.1:9383290-9383309 MS.gene70305:intron 50.0%
GTCAGTGGCTCAAGATGTCA+AGG - chr4.1:9382455-9382474 MS.gene70305:CDS 50.0%
TCCAGCTGCTCTTCGTACTT+TGG + chr4.1:9384420-9384439 None:intergenic 50.0%
TCCCTTAAGGGCAGGAAGTT+CGG + chr4.1:9381876-9381895 None:intergenic 50.0%
TCCGAACTTCCTGCCCTTAA+GGG - chr4.1:9381872-9381891 MS.gene70305:intron 50.0%
TCTATCCTCTATGCGTGGAG+TGG - chr4.1:9384163-9384182 MS.gene70305:intron 50.0%
! CAGTGCCGGAGATTTAACAC+TGG + chr4.1:9383212-9383231 None:intergenic 50.0%
! CGGTTCGCCACTTTGCTAAA+GGG - chr4.1:9381840-9381859 MS.gene70305:intron 50.0%
! TGACTTGGGCAGGAGAAAGT+GGG + chr4.1:9383048-9383067 None:intergenic 50.0%
!! CAGGGCAAACTTGTTGTCAG+TGG - chr4.1:9382440-9382459 MS.gene70305:CDS 50.0%
!! TTGACTTGGGCAGGAGAAAG+TGG + chr4.1:9383049-9383068 None:intergenic 50.0%
AACACTGGAGATGCTCCAGG+TGG + chr4.1:9383197-9383216 None:intergenic 55.0%
AATAGCCAAAGCGCAGCTGG+AGG - chr4.1:9384446-9384465 MS.gene70305:intron 55.0%
ATTCAAGGATGAGCCTGCGG+CGG - chr4.1:9384887-9384906 MS.gene70305:intron 55.0%
CCTCCCTGAAATGGCAGACA+AGG + chr4.1:9384866-9384885 None:intergenic 55.0%
CTTCCTGCCCTTAAGGGAGA+CGG - chr4.1:9381878-9381897 MS.gene70305:intron 55.0%
GAAACAGCAGCTGGATCCTC+TGG + chr4.1:9382239-9382258 None:intergenic 55.0%
GCCAAAGTACGAAGAGCAGC+TGG - chr4.1:9384416-9384435 MS.gene70305:intron 55.0%
GGAACTCACCGTCTCCCTTA+AGG + chr4.1:9381889-9381908 None:intergenic 55.0%
GGCGCCAACAACAGAACTTG+AGG - chr4.1:9383231-9383250 MS.gene70305:intron 55.0%
GTCCGAACTTCCTGCCCTTA+AGG - chr4.1:9381871-9381890 MS.gene70305:intron 55.0%
! CCGGTTCGCCACTTTGCTAA+AGG - chr4.1:9381839-9381858 MS.gene70305:intron 55.0%
! CCTTGTCTGCCATTTCAGGG+AGG - chr4.1:9384863-9384882 MS.gene70305:intron 55.0%
! TGTGGGGGTGGTTCTATCGT+GGG + chr4.1:9382928-9382947 None:intergenic 55.0%
!! AGCTGGATCCTCTGGAGCTA+TGG + chr4.1:9382231-9382250 None:intergenic 55.0%
!! GCAACGGGAGTTTGCTGTTC+CGG - chr4.1:9381820-9381839 MS.gene70305:intron 55.0%
!! TTTTGACGAAGGTGTGGGGG+TGG + chr4.1:9382940-9382959 None:intergenic 55.0%
CAACTCCTCCAGCTGCGCTT+TGG + chr4.1:9384454-9384473 None:intergenic 60.0%
GGAGATGCTCCAGGTGGAAC+CGG + chr4.1:9383191-9383210 None:intergenic 60.0%
GGCAGGAAGTTCGGACCCTT+CGG + chr4.1:9381867-9381886 None:intergenic 60.0%
GGGCAGGAGAAAGTGGGTGT+GGG + chr4.1:9383042-9383061 None:intergenic 60.0%
TCACCGTCTCCCTTAAGGGC+AGG + chr4.1:9381884-9381903 None:intergenic 60.0%
TCTGTTGTTGGCGCCAGTGC+CGG + chr4.1:9383226-9383245 None:intergenic 60.0%
TGGGCAGGAGAAAGTGGGTG+TGG + chr4.1:9383043-9383062 None:intergenic 60.0%
! GTGTGGGGGTGGTTCTATCG+TGG + chr4.1:9382929-9382948 None:intergenic 60.0%
!! GTTTTGACGTCAACCGCCGC+AGG + chr4.1:9384903-9384922 None:intergenic 60.0%
CTCCAGGTGGAACCGGCGTT+GGG + chr4.1:9383184-9383203 None:intergenic 65.0%
TCCAGGTGGAACCGGCGTTG+GGG + chr4.1:9383183-9383202 None:intergenic 65.0%
GCTCCAGGTGGAACCGGCGT+TGG + chr4.1:9383185-9383204 None:intergenic 70.0%
!! ACCCCAACGCCGGTTCCACC+TGG - chr4.1:9383179-9383198 MS.gene70305:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 9381256 9384947 9381256 ID=MS.gene70305
chr4.1 mRNA 9381256 9384947 9381256 ID=MS.gene70305.t1;Parent=MS.gene70305
chr4.1 exon 9384909 9384947 9384909 ID=MS.gene70305.t1.exon1;Parent=MS.gene70305.t1
chr4.1 CDS 9384909 9384947 9384909 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9384304 9384406 9384304 ID=MS.gene70305.t1.exon2;Parent=MS.gene70305.t1
chr4.1 CDS 9384304 9384406 9384304 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9383909 9384053 9383909 ID=MS.gene70305.t1.exon3;Parent=MS.gene70305.t1
chr4.1 CDS 9383909 9384053 9383909 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9383650 9383760 9383650 ID=MS.gene70305.t1.exon4;Parent=MS.gene70305.t1
chr4.1 CDS 9383650 9383760 9383650 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9382374 9382520 9382374 ID=MS.gene70305.t1.exon5;Parent=MS.gene70305.t1
chr4.1 CDS 9382374 9382520 9382374 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9381689 9381811 9381689 ID=MS.gene70305.t1.exon6;Parent=MS.gene70305.t1
chr4.1 CDS 9381689 9381811 9381689 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
chr4.1 exon 9381256 9381322 9381256 ID=MS.gene70305.t1.exon7;Parent=MS.gene70305.t1
chr4.1 CDS 9381256 9381322 9381256 ID=cds.MS.gene70305.t1;Parent=MS.gene70305.t1
Gene Sequence

>MS.gene70305

ATGGCACTCGCTTCACGCCTCGCATCCAAATCCAAATTGGTTTGTTCCTCATTTCTTCTATTCATTCTCGCAACCGATTTCATTTCTATTCTTTTTCATATTCCAATTTCTGATTTTCATGCCAGAAACTCTAATATTGGGATCTGAACAAATTTTGTGTTTTATCCGATTCTCAATTCCACTATTCGAAACAAAAAATATTTGTTAAATTAACTGATTTTTCCATTGGATTTCGAGTGTTAAGATCTCATTTTTTTTATTCCCTTTTGTCTAATTAGGTTATTATTTTCTCTTATCAAACGCGTATTTCAATTTTCTGCATCTAGCTCATCAATTATCATTAGCCATGGCCTCATCATAAAAATTATTTTTTTCAGCTAATTATTTACTAGTTGCATTGCGGTCACTGAAACTGAATATAATTTTACTGGTTGATATAAGTTATTTGTTTATTAAATTAAATGTGTTGGGTTCTTTAATCCACCTACTGATTTTTTTTGTTGTTGCTTGAATTGTGCCCAATTTTCTACTCTTGGTATAGCTGTATGGCGGTCAAATGCTTCTGCAACGGGAGTTTGCTGTTCCGGTTCGCCACTTTGCTAAAGGGTCCGAAGGGTCCGAACTTCCTGCCCTTAAGGGAGACGGTGAGTTCCCCTTTACTTTGGACTTGTATTTTTTATATTATATGAGTATCGTAGGGATTTTGTGTCTGAGACAGTGATAGGCATGTTGGTGTCTGACTCAATAGTTGTTTGTCTCTTCGTGTTTGTTCAACTTAAGCTGATTTATGCAAAGAAGAAAAGGAATAGCCACTTTGATTTTCAATAGAAATTTTGTGCTTTTTTATGTGAATTTCTCAATTCTGACAAAATACTTTTGATTGAATGACAAAAGAGATGCTGAAAAACATTTATTTGGAAGTGAAGAACAAATTTGAGACTGCCATCGGAATATTAAGGAAGGAGAAGATCACCATAGCTCCAGAGGATCCAGCTGCTGTTTCTCAATATGCGAAGGTCATGAAAACTATCAGAGAGAAGTGAGTTTCTCCTTTACCTTGTTGTTTTTATCATAGTCTTTCTTCTCAGTATTTACCAACTTATATCTCGTAATCTTTTAAACATTTAATTTTTGTTGTTTACAATACTTAATTATGTTTTGCCTGCATTTTGTTGTGCATTCTTCAGGGCAAACTTGTTGTCAGTGGCTCAAGATGTCAAGGCTGACATTGATATAGAGACACAAGATATTCCTGATGCTCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGTATGTGATGTTCTATTTTACTCTCCATTTTTAACTAGATGATGTGCATACATTTAAGTAATGTACATTATTATTACTTTTTAACGTTGAAGATCTTTGTTTTTGTGATATGTACTATAATATTATTACTTTTTAACGTTGAAGATCTTTGTTTTTGTGATATGTACTATAATATGATTATTTCTATTCAGTTTACCTTTCTTCTCATTGTCAAGGTGCTTTCTCTTAAGGTGGTGTCTAACATGGACAATCGGTCTTTGTGGTGATGCACAACATTTTTCTACTTATCGATTGAGGGTTTTAAGCAATTCTGACATACTCCCACAACACCATAGTTTTCTCCCCTTCCCTCCTAATCACTCTGTATCTGTCCCACGATAGAACCACCCCCACACCTTCGTCAAAAATACTGAAATTCCAGTAGTGTGTTTCAAATCAAATATTTTAGGAATTATATAATGAAAATTGTGTAGATTATTGTTATGCCCACACCCACTTTCTCCTGCCCAAGTCAAAACAATCAGTACCATAAGAAAGAAGGTAACCGATGAAACAGAAAAAAGAAGAGAGAATATAGGATAAGCTTAAGGAACTAATAAAACAACAAGAGAGAGATACATTCATAACCCCAACGCCGGTTCCACCTGGAGCATCTCCAGTGTTAAATCTCCGGCACTGGCGCCAACAACAGAACTTGAGGACCATGATATCATTTCAATCGAGATTTAGGAAATATGGGGAAGGATTTAGCATGGAAGGAACACCATAGAATCTAGTGAGGCTTCAAAATCAAATGATAGATAAAATTTGTGCGCAATGTACCACTTAATGTAGTTGTGTCTGTTACACAACGCCTTCTTTTAAACATGTGGTTCTTAAAATTGTCAAATCACTTTGTTCTTACCTCAAAATTATGAATACCCTGAATTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTTACCCGATTAGTTGTCCTTTTCAAACTTATGTGCGTGCATATGTTTTATATATATACAAATGAGAGAAAAGGGAACATGATGCAGACATCTCTTGCAACAGGTGTTACATCAGGCTCTAGTCACATTTGCTCATATATCTGGGTACATTTCTTTTCAGGAGAGGTCTTACAGATGATCTTGGAGCAGAGGCTTTAATGTTTGATGCATTGGAGAAAATTGAAAAGGATTTAAAGAAACCCCTATTGAGAAATGATAAGAAAGGAATGGACCTTCTTTTGGCAGAGTTTGATAAGATTAATAACAAGTAAGTTCATATTCCTATGTTGTATCTTTTCAAGCTTTTGTATGTAACTATTTTATTGTTTATGTTGTCATGCAATTTAACGGGATACTTTCTATATGTTTGGTGATTTTTAAATATTATTTTCTGGTGTAGTTGTATTTCAGTATCCTCATTCTGTTGTAAAATGATCATTTCATCTTATGCTTTAGAAGAAACAGTTTTTTGTGATAAAATGTATTTTTGAGTAGACAATGTCGATCGAGTCTTGTAATTTATGAAGGTATTTATGTGTTTTGTTTTCGTTCTTTCCAAATATTGCATTTTGTGGCTGCTGCTTGTTTGGGAATTTTATAGTCTATCCTCTATGCGTGGAGTGGTCAATTGTTCCTTTTGTGGATTCAATTTAGTTGTTTGAATGCTAGCTTTTGTTTCGGTAATTTAAATGTTTACTTTGCTAGGGAGGATCCTATAGTGTTTAATTATTTATCTTCATTTGAGCAGAATGAATTACTGGGTTATAATTACTTTACTTATTTTGGTTTTCCTCCTGTTGTTTTTTCACCCTTTGATGGTGCCATCTTAGACTTGGAATTCGAAAAGAAGAATTGCCAAAGTACGAAGAGCAGCTGGAGCTTAAAATAGCCAAAGCGCAGCTGGAGGAGTTGAAAAAGGATGCTGTTGAGGCAATGGAAACTCAAAAGAAAAGGTATTCCTCACACCACCCTTTTATTAGGAGGCAAAATAATTACTCACAGTACCATTTCTAAGTTCTAACTTCTGTATCTTTCCGTTCTCCCTGATTCTCCTGCTTTTTTTTTTTTATTATAACAAACACCTTTGTTAAGCGCATGGTACTTGCTTTTATTTTCTGCCTGATTCTAACTTTGAAGATAGTAGTATAAAATGTCCCTATGGCTTTTGAATTTGGAATATATGAATTTCACATGGACCAATTGATTTGTTGGAAATAGGACCATTGTTATGGTTAGAGACACTTTTTACTCATTTCACTACGAAGTAAATAAAATTTTAAACCATTATATGATTTATTTTTCCTTGTCTGCCATTTCAGGGAGGAATTCAAGGATGAGCCTGCGGCGGTTGACGTCAAAACTTTGGACATCCGGAACTTCCTTTAA

Protein sequence

>MS.gene70305.t1

MALASRLASKSKLLYGGQMLLQREFAVPVRHFAKGSEGSELPALKGDEMLKNIYLEVKNKFETAIGILRKEKITIAPEDPAAVSQYAKVMKTIREKANLLSVAQDVKADIDIETQDIPDARTYLLTLKEIRTKRGLTDDLGAEALMFDALEKIEKDLKKPLLRNDKKGMDLLLAEFDKINNKLGIRKEELPKYEEQLELKIAKAQLEELKKDAVEAMETQKKREEFKDEPAAVDVKTLDIRNFL