Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052778.t1 | XP_003604582.1 | 95.2 | 229 | 8 | 2 | 1 | 226 | 1 | 229 | 3.10E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052778.t1 | Q8LBZ4 | 34.4 | 154 | 83 | 4 | 74 | 226 | 168 | 304 | 3.4e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052778.t1 | G7JLU6 | 95.2 | 229 | 8 | 2 | 1 | 226 | 1 | 229 | 2.3e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050228 | MS.gene052778 | 0.808382 | 3.18E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene053085 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene052778 | MS.gene071529 | 0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene074527 | 0.810842 | 9.43E-51 | -1.69E-46 |
| MS.gene052778 | MS.gene23912 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene24247 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene052778 | MS.gene28204 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene36862 | 0.831944 | 1.25E-55 | -1.69E-46 |
| MS.gene052778 | MS.gene36863 | 0.839108 | 1.93E-57 | -1.69E-46 |
| MS.gene052778 | MS.gene52059 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene57160 | -0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene57162 | -0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene61139 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene052778 | MS.gene63507 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene052778 | MS.gene66970 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene81745 | 0.807726 | 4.39E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene85168 | 0.807487 | 4.94E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene87804 | 0.802548 | 5.32E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene97268 | 0.8078 | 4.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052778.t1 | MTR_4g014750 | 95.197 | 229 | 8 | 2 | 1 | 226 | 1 | 229 | 1.49e-150 | 418 |
| MS.gene052778.t1 | MTR_4g014750 | 94.643 | 168 | 6 | 2 | 1 | 165 | 1 | 168 | 5.70e-104 | 298 |
| MS.gene052778.t1 | MTR_1g052405 | 33.533 | 167 | 93 | 5 | 60 | 225 | 176 | 325 | 9.21e-19 | 83.6 |
| MS.gene052778.t1 | MTR_1g492730 | 35.294 | 153 | 83 | 5 | 74 | 225 | 165 | 302 | 1.70e-16 | 77.0 |
| MS.gene052778.t1 | MTR_1g052380 | 29.412 | 153 | 91 | 4 | 74 | 225 | 56 | 192 | 8.84e-15 | 70.9 |
| MS.gene052778.t1 | MTR_3g085620 | 29.825 | 171 | 98 | 5 | 60 | 225 | 20 | 173 | 1.65e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052778.t1 | AT2G38025 | 59.914 | 232 | 83 | 3 | 4 | 225 | 2 | 233 | 2.33e-88 | 261 |
| MS.gene052778.t1 | AT2G38025 | 66.667 | 171 | 51 | 2 | 61 | 225 | 40 | 210 | 1.45e-74 | 225 |
| MS.gene052778.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 74 | 226 | 168 | 304 | 1.45e-21 | 91.3 |
| MS.gene052778.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 74 | 226 | 168 | 304 | 1.45e-21 | 91.3 |
| MS.gene052778.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 74 | 226 | 168 | 304 | 1.45e-21 | 91.3 |
Find 51 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGGGCAACCTGATTTC+TGG | 0.166895 | 4.4:+86118161 | MS.gene052778:CDS |
| AATCGGAATTCAAGCTTATT+TGG | 0.181024 | 4.4:+86115905 | MS.gene052778:CDS |
| GTATGGAAGTGAATTTAAAA+AGG | 0.254691 | 4.4:+86118733 | MS.gene052778:CDS |
| TTCATTCCCATTGCAGAGTA+TGG | 0.278201 | 4.4:+86118716 | MS.gene052778:CDS |
| CGGTTGCTTCTGTTGTTTCT+CGG | 0.302169 | 4.4:+86115879 | MS.gene052778:CDS |
| CTGTTGTTTCTCGGTTTAAT+CGG | 0.321517 | 4.4:+86115888 | MS.gene052778:CDS |
| GATTCTCCTCCCCAGAAATC+AGG | 0.356950 | 4.4:-86118172 | None:intergenic |
| CATTATGACCTTCTGTTATG+AGG | 0.384606 | 4.4:+86118800 | MS.gene052778:CDS |
| CTCATAACAGAAGGTCATAA+TGG | 0.393100 | 4.4:-86118799 | None:intergenic |
| CGCAGTTACTGCAGACGGAT+TGG | 0.393294 | 4.4:+86118145 | MS.gene052778:intron |
| GATTGGGCAACCTGATTTCT+GGG | 0.407510 | 4.4:+86118162 | MS.gene052778:CDS |
| GCAGTTACTGCAGACGGATT+GGG | 0.416549 | 4.4:+86118146 | MS.gene052778:intron |
| GCGGTGTCTGTTTCGTGCTC+TGG | 0.442002 | 4.4:+86117081 | MS.gene052778:CDS |
| GGGAGGAGAATCAGAACTAT+TGG | 0.442300 | 4.4:+86118183 | MS.gene052778:CDS |
| AATTCAAGCTTATTTGGTGT+TGG | 0.442709 | 4.4:+86115911 | MS.gene052778:CDS |
| AGAGGCGGCAGTCGGGGATC+TGG | 0.444319 | 4.4:+86118692 | MS.gene052778:CDS |
| GCAGCATAGAGGCGGCAGTC+GGG | 0.460456 | 4.4:+86118685 | MS.gene052778:intron |
| TTTAAAACACACCGTTGTAA+AGG | 0.468424 | 4.4:-86118043 | None:intergenic |
| ATTCTTAAGCAGTTGAAAGA+TGG | 0.469119 | 4.4:+86115827 | MS.gene052778:CDS |
| ATTTGAGATTGTTTCTTCAC+CGG | 0.481993 | 4.4:+86115859 | MS.gene052778:CDS |
| TGAAGGCATACCTCATGCTC+TGG | 0.484252 | 4.4:-86118557 | None:intergenic |
| CGAGAAACAACAGAAGCAAC+CGG | 0.484700 | 4.4:-86115878 | None:intergenic |
| ATCAACCGTGACAGCAATGA+TGG | 0.485153 | 4.4:-86118017 | None:intergenic |
| TCACTTCCATACTCTGCAAT+GGG | 0.488534 | 4.4:-86118722 | None:intergenic |
| GTTCAGAAGGTTACAGGGGA+TGG | 0.490600 | 4.4:+86117058 | MS.gene052778:CDS |
| TTCACTTCCATACTCTGCAA+TGG | 0.511087 | 4.4:-86118723 | None:intergenic |
| CAAAGGAATGGCTCACAACA+AGG | 0.527955 | 4.4:+86117638 | MS.gene052778:CDS |
| CAGCATAGAGGCGGCAGTCG+GGG | 0.531924 | 4.4:+86118686 | MS.gene052778:intron |
| TTCAGAAGGTTACAGGGGAT+GGG | 0.534226 | 4.4:+86117059 | MS.gene052778:CDS |
| TCTGGTATGTACACAATGAT+TGG | 0.545889 | 4.4:-86118539 | None:intergenic |
| GAAGCTATATGTGAAAATGT+AGG | 0.546789 | 4.4:+86117971 | MS.gene052778:CDS |
| TAACACAGATGAATTAAGAA+TGG | 0.549472 | 4.4:+86117940 | MS.gene052778:intron |
| TGCAGCATAGAGGCGGCAGT+CGG | 0.570182 | 4.4:+86118684 | MS.gene052778:intron |
| GTTCGATGAAATCAGGTCAA+AGG | 0.573936 | 4.4:+86117621 | MS.gene052778:intron |
| TTTCAGTTCAGAAGGTTACA+GGG | 0.574807 | 4.4:+86117053 | MS.gene052778:CDS |
| TTTGCCGCAGTTACTGCAGA+CGG | 0.579322 | 4.4:+86118140 | MS.gene052778:intron |
| GGGCAACCTGATTTCTGGGG+AGG | 0.583375 | 4.4:+86118166 | MS.gene052778:CDS |
| ATGAAATCAGGTCAAAGGAA+TGG | 0.584616 | 4.4:+86117626 | MS.gene052778:intron |
| AGAAGCCATCATTGCTGTCA+CGG | 0.593134 | 4.4:+86118012 | MS.gene052778:CDS |
| AATGGCTCACAACAAGGGAA+TGG | 0.600900 | 4.4:+86117644 | MS.gene052778:CDS |
| ATACAATTCCTCATAACAGA+AGG | 0.606013 | 4.4:-86118808 | None:intergenic |
| TTCAGTTCAGAAGGTTACAG+GGG | 0.624268 | 4.4:+86117054 | MS.gene052778:CDS |
| CGCGAGGAGAGAGAAAATGC+AGG | 0.629042 | 4.4:+86117678 | MS.gene052778:CDS |
| TGTGTACATACCAGAGCATG+AGG | 0.636499 | 4.4:+86118547 | MS.gene052778:CDS |
| AGAAGGTTACAGGGGATGGG+CGG | 0.639785 | 4.4:+86117062 | MS.gene052778:CDS |
| AAAGGAATGGCTCACAACAA+GGG | 0.664021 | 4.4:+86117639 | MS.gene052778:CDS |
| ATTGGGCAACCTGATTTCTG+GGG | 0.679177 | 4.4:+86118163 | MS.gene052778:CDS |
| AATGGCTCTTAACCAACGCG+AGG | 0.698050 | 4.4:+86117662 | MS.gene052778:CDS |
| CGGTTGATGAGCCTTTACAA+CGG | 0.717115 | 4.4:+86118032 | MS.gene052778:CDS |
| GCTGTGAGGCTATTATTCAG+CGG | 0.728345 | 4.4:+86118770 | MS.gene052778:CDS |
| GTTCTAGCAGAAAAGCTGTG+AGG | 0.757620 | 4.4:+86118756 | MS.gene052778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAACTAACT+TGG | - | chr4.4:86116199-86116218 | None:intergenic | 10.0% |
| !! | TCAAAAAAATATAATCAAAA+AGG | - | chr4.4:86116680-86116699 | None:intergenic | 10.0% |
| !!! | ATATAATTTTGATAAATACA+GGG | - | chr4.4:86116458-86116477 | None:intergenic | 10.0% |
| !!! | CTTTATTAATTTCATTTTTT+TGG | + | chr4.4:86116007-86116026 | MS.gene052778:intron | 10.0% |
| !!! | TATATAATTTTGATAAATAC+AGG | - | chr4.4:86116459-86116478 | None:intergenic | 10.0% |
| !! | TAAAATATTAGATAGATCAA+AGG | - | chr4.4:86118603-86118622 | None:intergenic | 15.0% |
| !!! | GATCTATCTAATATTTTATA+AGG | + | chr4.4:86118605-86118624 | MS.gene052778:intron | 15.0% |
| !!! | TATCTTCTATTAGTTTTTTA+TGG | - | chr4.4:86116570-86116589 | None:intergenic | 15.0% |
| !! | AAACAAAACTAACTAAAGAA+TGG | - | chr4.4:86116530-86116549 | None:intergenic | 20.0% |
| !! | AAACTAATAGAAGATAAACT+CGG | + | chr4.4:86116574-86116593 | MS.gene052778:intron | 20.0% |
| !! | AATTTAACAAACAAATTTCC+AGG | - | chr4.4:86116753-86116772 | None:intergenic | 20.0% |
| !! | ATTAGCAATGTTCAAAAATT+AGG | - | chr4.4:86115761-86115780 | None:intergenic | 20.0% |
| !! | ATTTAACAAACAAATTTCCA+GGG | - | chr4.4:86116752-86116771 | None:intergenic | 20.0% |
| !! | GATATACTAGCAATAAAATA+TGG | + | chr4.4:86117707-86117726 | MS.gene052778:intron | 20.0% |
| !! | GTGAAAAAAATCTATAACAA+AGG | - | chr4.4:86117125-86117144 | None:intergenic | 20.0% |
| !! | TATGGAAGTGAATTTAAAAA+GGG | + | chr4.4:86118734-86118753 | MS.gene052778:CDS | 20.0% |
| !! | TTAGCAATGTTCAAAAATTA+GGG | - | chr4.4:86115760-86115779 | None:intergenic | 20.0% |
| !! | TTTGATATATTTAGAGACTA+TGG | + | chr4.4:86116604-86116623 | MS.gene052778:intron | 20.0% |
| !!! | AAACTAAGTATTGTTTTTGA+AGG | - | chr4.4:86118577-86118596 | None:intergenic | 20.0% |
| !!! | AAATTAATTTTAGAGGTAAG+CGG | + | chr4.4:86117589-86117608 | MS.gene052778:intron | 20.0% |
| !!! | AATTTGAACTCTTTTCTTAA+TGG | + | chr4.4:86116954-86116973 | MS.gene052778:intron | 20.0% |
| !!! | AGAAGTATCTTTATCAATAA+TGG | + | chr4.4:86116927-86116946 | MS.gene052778:intron | 20.0% |
| !!! | ATATTTTTTTGATCCTTTGT+TGG | + | chr4.4:86116688-86116707 | MS.gene052778:intron | 20.0% |
| !!! | GTGTTTTAAAAAACCATTAA+CGG | + | chr4.4:86118056-86118075 | MS.gene052778:intron | 20.0% |
| !!! | GTTGTTCAAATTAATTTTAG+AGG | + | chr4.4:86117582-86117601 | MS.gene052778:intron | 20.0% |
| !!! | TATTTTTTTGATCCTTTGTT+GGG | + | chr4.4:86116689-86116708 | MS.gene052778:intron | 20.0% |
| !!! | TTTTCATGAATTTATCCTTA+TGG | + | chr4.4:86116771-86116790 | MS.gene052778:intron | 20.0% |
| ! | AACTAATAGAAGATAAACTC+GGG | + | chr4.4:86116575-86116594 | MS.gene052778:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr4.4:86116295-86116314 | MS.gene052778:intron | 25.0% |
| ! | AGAAAATCTATTTAGTCCTT+CGG | - | chr4.4:86118252-86118271 | None:intergenic | 25.0% |
| ! | ATATTCCTTTCTATAGCAAA+AGG | - | chr4.4:86116329-86116348 | None:intergenic | 25.0% |
| ! | CTTGTATTTAATACCATGAT+TGG | + | chr4.4:86118108-86118127 | MS.gene052778:intron | 25.0% |
| ! | GAAATGAAAACAAAGTGAAT+GGG | - | chr4.4:86117893-86117912 | None:intergenic | 25.0% |
| ! | GTATGGAAGTGAATTTAAAA+AGG | + | chr4.4:86118733-86118752 | MS.gene052778:CDS | 25.0% |
| ! | TAACACAGATGAATTAAGAA+TGG | + | chr4.4:86117940-86117959 | MS.gene052778:intron | 25.0% |
| ! | TGAAAGCAAAACAAACAAAA+GGG | - | chr4.4:86117742-86117761 | None:intergenic | 25.0% |
| !! | AGATCTTAATTTTCCGTTAA+TGG | - | chr4.4:86118072-86118091 | None:intergenic | 25.0% |
| !! | TGTTGAATATAAGCCTTTTA+AGG | + | chr4.4:86116825-86116844 | MS.gene052778:intron | 25.0% |
| !!! | AATATAAGCCTTTTAAGGAA+GGG | + | chr4.4:86116830-86116849 | MS.gene052778:intron | 25.0% |
| !!! | AGATTTTATTTACAAGCTTC+TGG | + | chr4.4:86117271-86117290 | MS.gene052778:intron | 25.0% |
| !!! | TATAACAAAGGTATTGAAGA+TGG | - | chr4.4:86117113-86117132 | None:intergenic | 25.0% |
| AAAATCTAACCCTAGAATCA+AGG | - | chr4.4:86117258-86117277 | None:intergenic | 30.0% | |
| AAACTAAAAATGCAGCATAG+AGG | + | chr4.4:86118674-86118693 | MS.gene052778:intron | 30.0% | |
| AAAGTGAATGGGAAAACTAA+AGG | - | chr4.4:86117882-86117901 | None:intergenic | 30.0% | |
| AACACATCCAAGTACTAAAA+TGG | - | chr4.4:86116417-86116436 | None:intergenic | 30.0% | |
| AACGGAAAATTAAGATCTTG+AGG | + | chr4.4:86118074-86118093 | MS.gene052778:intron | 30.0% | |
| AAGTTAGTGTCTCTTTGAAT+TGG | + | chr4.4:86116087-86116106 | MS.gene052778:intron | 30.0% | |
| AATCGGAATTCAAGCTTATT+TGG | + | chr4.4:86115905-86115924 | MS.gene052778:CDS | 30.0% | |
| ACGAAGAATTGTGAAACTAA+AGG | - | chr4.4:86116363-86116382 | None:intergenic | 30.0% | |
| ACTAATAGAAGATAAACTCG+GGG | + | chr4.4:86116576-86116595 | MS.gene052778:intron | 30.0% | |
| ATTCTTAAGCAGTTGAAAGA+TGG | + | chr4.4:86115827-86115846 | MS.gene052778:CDS | 30.0% | |
| CAAAATAACACATCCAATCA+TGG | - | chr4.4:86118124-86118143 | None:intergenic | 30.0% | |
| GAAGCTATATGTGAAAATGT+AGG | + | chr4.4:86117971-86117990 | MS.gene052778:CDS | 30.0% | |
| GATATATTTAGAGACTATGG+TGG | + | chr4.4:86116607-86116626 | MS.gene052778:intron | 30.0% | |
| GGAAATGAAAACAAAGTGAA+TGG | - | chr4.4:86117894-86117913 | None:intergenic | 30.0% | |
| GGATTTCAGAATTACAGATT+TGG | + | chr4.4:86116795-86116814 | MS.gene052778:intron | 30.0% | |
| GTGAAAGCAAAACAAACAAA+AGG | - | chr4.4:86117743-86117762 | None:intergenic | 30.0% | |
| TACATCAATTGGATTGAAGA+CGG | - | chr4.4:86117475-86117494 | None:intergenic | 30.0% | |
| TCATGAATTTATCCTTATGG+AGG | + | chr4.4:86116774-86116793 | MS.gene052778:intron | 30.0% | |
| TGGGAAAACTAAAGGTTATA+AGG | - | chr4.4:86117874-86117893 | None:intergenic | 30.0% | |
| TTAGTATGAACTGACATATC+TGG | - | chr4.4:86117507-86117526 | None:intergenic | 30.0% | |
| TTCAGATTGCATTTAATCAC+TGG | - | chr4.4:86118321-86118340 | None:intergenic | 30.0% | |
| ! | ATTTGAGATTGTTTCTTCAC+CGG | + | chr4.4:86115859-86115878 | MS.gene052778:CDS | 30.0% |
| ! | TTAATTTGAACAACTCGCTA+TGG | - | chr4.4:86117576-86117595 | None:intergenic | 30.0% |
| ! | TTTAAAACACACCGTTGTAA+AGG | - | chr4.4:86118046-86118065 | None:intergenic | 30.0% |
| ! | TTTTAGTACTTGGATGTGTT+AGG | + | chr4.4:86116417-86116436 | MS.gene052778:intron | 30.0% |
| ! | TTTTCTTTCCCTTCCTTAAA+AGG | - | chr4.4:86116841-86116860 | None:intergenic | 30.0% |
| !! | AATTCAAGCTTATTTGGTGT+TGG | + | chr4.4:86115911-86115930 | MS.gene052778:CDS | 30.0% |
| !! | GAATATAAGCCTTTTAAGGA+AGG | + | chr4.4:86116829-86116848 | MS.gene052778:intron | 30.0% |
| !! | TAAACAGCCATTTTAGTACT+TGG | + | chr4.4:86116407-86116426 | MS.gene052778:intron | 30.0% |
| !! | TAATTCTGAAATCCTCCATA+AGG | - | chr4.4:86116789-86116808 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGCTTTCACTTA+AGG | + | chr4.4:86117746-86117765 | MS.gene052778:intron | 30.0% |
| AGAAAGGAATATTTCACACG+AGG | + | chr4.4:86116337-86116356 | MS.gene052778:intron | 35.0% | |
| ATATTTAGAGACTATGGTGG+TGG | + | chr4.4:86116610-86116629 | MS.gene052778:intron | 35.0% | |
| ATGAAATCAGGTCAAAGGAA+TGG | + | chr4.4:86117626-86117645 | MS.gene052778:intron | 35.0% | |
| ATTCGGCTACAAAACTGAAA+AGG | - | chr4.4:86117147-86117166 | None:intergenic | 35.0% | |
| ATTGAACTGCCTTGATTCTA+GGG | + | chr4.4:86117246-86117265 | MS.gene052778:intron | 35.0% | |
| CGCAAGTCAAAACATTGAAA+AGG | - | chr4.4:86117915-86117934 | None:intergenic | 35.0% | |
| TATTGAACTGCCTTGATTCT+AGG | + | chr4.4:86117245-86117264 | MS.gene052778:intron | 35.0% | |
| TCCTTTGTTGGGAAAGAAAA+TGG | + | chr4.4:86116700-86116719 | MS.gene052778:intron | 35.0% | |
| TCTAGCACTAAATTGATCCA+CGG | - | chr4.4:86116502-86116521 | None:intergenic | 35.0% | |
| TCTCAGATCAATAGTTGAAG+CGG | - | chr4.4:86117812-86117831 | None:intergenic | 35.0% | |
| TCTGGTATGTACACAATGAT+TGG | - | chr4.4:86118542-86118561 | None:intergenic | 35.0% | |
| TTACCTCAAAATCTTATCCC+TGG | + | chr4.4:86116732-86116751 | MS.gene052778:intron | 35.0% | |
| TTTCAGTTCAGAAGGTTACA+GGG | + | chr4.4:86117053-86117072 | MS.gene052778:CDS | 35.0% | |
| ! | ACCATTTTCTTTCCCAACAA+AGG | - | chr4.4:86116704-86116723 | None:intergenic | 35.0% |
| ! | GCTCAAACTAATGAAGGTTT+TGG | - | chr4.4:86117548-86117567 | None:intergenic | 35.0% |
| ! | TACCTGAATTTTCATTCCCA+GGG | - | chr4.4:86118470-86118489 | None:intergenic | 35.0% |
| ! | TCCTACTTGACAATGTTTTG+TGG | - | chr4.4:86117349-86117368 | None:intergenic | 35.0% |
| ! | TTTCCAGGGATAAGATTTTG+AGG | - | chr4.4:86116738-86116757 | None:intergenic | 35.0% |
| ! | TTTTCAGTTCAGAAGGTTAC+AGG | + | chr4.4:86117052-86117071 | MS.gene052778:CDS | 35.0% |
| !! | CTGTTGTTTCTCGGTTTAAT+CGG | + | chr4.4:86115888-86115907 | MS.gene052778:CDS | 35.0% |
| !! | GAGTTCCTTTTGCTATAGAA+AGG | + | chr4.4:86116321-86116340 | MS.gene052778:intron | 35.0% |
| !! | GTTTCATCTGTTGACTCATT+AGG | - | chr4.4:86118364-86118383 | None:intergenic | 35.0% |
| !!! | ACTCACTTTTTCGCTAGAAT+TGG | + | chr4.4:86115944-86115963 | MS.gene052778:CDS | 35.0% |
| AAAAGGAACTCACTCCTGTT+TGG | - | chr4.4:86116312-86116331 | None:intergenic | 40.0% | |
| AAAGGAATGGCTCACAACAA+GGG | + | chr4.4:86117639-86117658 | MS.gene052778:CDS | 40.0% | |
| AACCCTGGGAATGAAAATTC+AGG | + | chr4.4:86118465-86118484 | MS.gene052778:intron | 40.0% | |
| ACCAATGTCCATGTTCTTTC+AGG | + | chr4.4:86118493-86118512 | MS.gene052778:intron | 40.0% | |
| ACCTGAAAGAACATGGACAT+TGG | - | chr4.4:86118497-86118516 | None:intergenic | 40.0% | |
| ACTAAATTGATCCACGGAAG+AGG | - | chr4.4:86116496-86116515 | None:intergenic | 40.0% | |
| ATTTGAACAACTCGCTATGG+TGG | - | chr4.4:86117573-86117592 | None:intergenic | 40.0% | |
| ATTTGAATCCACAGACTCAG+AGG | + | chr4.4:86115793-86115812 | MS.gene052778:intron | 40.0% | |
| CGGAGATAAAAATGCAAGCA+TGG | - | chr4.4:86118232-86118251 | None:intergenic | 40.0% | |
| CTAAAAATGCAGCATAGAGG+CGG | + | chr4.4:86118677-86118696 | MS.gene052778:intron | 40.0% | |
| CTGTTCACTGTGAGAACATA+AGG | - | chr4.4:86117005-86117024 | None:intergenic | 40.0% | |
| GCCACAAAACATTGTCAAGT+AGG | + | chr4.4:86117345-86117364 | MS.gene052778:intron | 40.0% | |
| GGACTAAAATGACCAGTACT+CGG | + | chr4.4:86116650-86116669 | MS.gene052778:intron | 40.0% | |
| GGTGAGACTGATACATCAAT+TGG | - | chr4.4:86117486-86117505 | None:intergenic | 40.0% | |
| GTGGCACAGTTCATACATTA+AGG | + | chr4.4:86116629-86116648 | MS.gene052778:intron | 40.0% | |
| GTGGTAGCTCAAACTAATGA+AGG | - | chr4.4:86117554-86117573 | None:intergenic | 40.0% | |
| GTTCGATGAAATCAGGTCAA+AGG | + | chr4.4:86117621-86117640 | MS.gene052778:intron | 40.0% | |
| TCACTTCCATACTCTGCAAT+GGG | - | chr4.4:86118725-86118744 | None:intergenic | 40.0% | |
| TGAACTCATGTGAAAACCCT+GGG | + | chr4.4:86118451-86118470 | MS.gene052778:intron | 40.0% | |
| TGACAGTACCTGAAAGAACA+TGG | - | chr4.4:86118504-86118523 | None:intergenic | 40.0% | |
| TTCACTTCCATACTCTGCAA+TGG | - | chr4.4:86118726-86118745 | None:intergenic | 40.0% | |
| TTCAGTTCAGAAGGTTACAG+GGG | + | chr4.4:86117054-86117073 | MS.gene052778:CDS | 40.0% | |
| TTCATTCCCATTGCAGAGTA+TGG | + | chr4.4:86118716-86118735 | MS.gene052778:CDS | 40.0% | |
| ! | ATGGCGCAAAAGCTTTTCAA+CGG | + | chr4.4:86115693-86115712 | MS.gene052778:CDS | 40.0% |
| ! | GCTTGCATTTTTATCTCCGA+AGG | + | chr4.4:86118233-86118252 | MS.gene052778:intron | 40.0% |
| ! | GTACCTGAATTTTCATTCCC+AGG | - | chr4.4:86118471-86118490 | None:intergenic | 40.0% |
| !! | ACAGTTGGTTCGATGAAATC+AGG | + | chr4.4:86117614-86117633 | MS.gene052778:intron | 40.0% |
| !! | AGACGGATTGTGTCATTAGA+TGG | - | chr4.4:86117458-86117477 | None:intergenic | 40.0% |
| !! | TGAGCGTTTTTCAGTTCAGA+AGG | + | chr4.4:86117045-86117064 | MS.gene052778:CDS | 40.0% |
| AATGGCTCACAACAAGGGAA+TGG | + | chr4.4:86117644-86117663 | MS.gene052778:CDS | 45.0% | |
| AGAAGCCATCATTGCTGTCA+CGG | + | chr4.4:86118012-86118031 | MS.gene052778:CDS | 45.0% | |
| ATCAACCGTGACAGCAATGA+TGG | - | chr4.4:86118020-86118039 | None:intergenic | 45.0% | |
| ATCATCATCCTCTGAGTCTG+TGG | - | chr4.4:86115804-86115823 | None:intergenic | 45.0% | |
| ATCATTGAATGCCTCTTCCG+TGG | + | chr4.4:86116482-86116501 | MS.gene052778:intron | 45.0% | |
| ATCCAATCAGCACCTGCATT+CGG | - | chr4.4:86117164-86117183 | None:intergenic | 45.0% | |
| ATTGGGCAACCTGATTTCTG+GGG | + | chr4.4:86118163-86118182 | MS.gene052778:CDS | 45.0% | |
| CAAAAAGGATAGCCGAGTAC+TGG | - | chr4.4:86116665-86116684 | None:intergenic | 45.0% | |
| CAAAGGAATGGCTCACAACA+AGG | + | chr4.4:86117638-86117657 | MS.gene052778:CDS | 45.0% | |
| CGAGAAACAACAGAAGCAAC+CGG | - | chr4.4:86115881-86115900 | None:intergenic | 45.0% | |
| CTGAACTCATGTGAAAACCC+TGG | + | chr4.4:86118450-86118469 | MS.gene052778:intron | 45.0% | |
| GATTGGGCAACCTGATTTCT+GGG | + | chr4.4:86118162-86118181 | MS.gene052778:CDS | 45.0% | |
| GCTGTGAGGCTATTATTCAG+CGG | + | chr4.4:86118770-86118789 | MS.gene052778:CDS | 45.0% | |
| GGGAGGAGAATCAGAACTAT+TGG | + | chr4.4:86118183-86118202 | MS.gene052778:CDS | 45.0% | |
| GTTCTAGCAGAAAAGCTGTG+AGG | + | chr4.4:86118756-86118775 | MS.gene052778:CDS | 45.0% | |
| TAGAGGTAAGCGGTAACAGT+TGG | + | chr4.4:86117599-86117618 | MS.gene052778:intron | 45.0% | |
| TGTGTACATACCAGAGCATG+AGG | + | chr4.4:86118547-86118566 | MS.gene052778:CDS | 45.0% | |
| TTCAGAAGGTTACAGGGGAT+GGG | + | chr4.4:86117059-86117078 | MS.gene052778:CDS | 45.0% | |
| !! | CGGTTGATGAGCCTTTACAA+CGG | + | chr4.4:86118032-86118051 | MS.gene052778:CDS | 45.0% |
| !! | CGGTTGCTTCTGTTGTTTCT+CGG | + | chr4.4:86115879-86115898 | MS.gene052778:CDS | 45.0% |
| !! | TCAGTTTTGTAGCCGAATGC+AGG | + | chr4.4:86117149-86117168 | MS.gene052778:intron | 45.0% |
| !!! | TTTATTAATTTCATTTTTTT+GGG | + | chr4.4:86116008-86116027 | MS.gene052778:intron | 5.0% |
| AATGGCTCTTAACCAACGCG+AGG | + | chr4.4:86117662-86117681 | MS.gene052778:CDS | 50.0% | |
| CAATCCGTCTGCAGTAACTG+CGG | - | chr4.4:86118147-86118166 | None:intergenic | 50.0% | |
| GATTCTCCTCCCCAGAAATC+AGG | - | chr4.4:86118175-86118194 | None:intergenic | 50.0% | |
| GGATTGGGCAACCTGATTTC+TGG | + | chr4.4:86118161-86118180 | MS.gene052778:CDS | 50.0% | |
| GTTCAGAAGGTTACAGGGGA+TGG | + | chr4.4:86117058-86117077 | MS.gene052778:CDS | 50.0% | |
| TTTGCCGCAGTTACTGCAGA+CGG | + | chr4.4:86118140-86118159 | MS.gene052778:intron | 50.0% | |
| ! | CATTTTCTCTCTCCTCGCGT+TGG | - | chr4.4:86117677-86117696 | None:intergenic | 50.0% |
| ! | GCAGTTACTGCAGACGGATT+GGG | + | chr4.4:86118146-86118165 | MS.gene052778:intron | 50.0% |
| ! | TGAAGGCATACCTCATGCTC+TGG | - | chr4.4:86118560-86118579 | None:intergenic | 50.0% |
| AGAAGGTTACAGGGGATGGG+CGG | + | chr4.4:86117062-86117081 | MS.gene052778:CDS | 55.0% | |
| CGCAGTTACTGCAGACGGAT+TGG | + | chr4.4:86118145-86118164 | MS.gene052778:intron | 55.0% | |
| CGCGAGGAGAGAGAAAATGC+AGG | + | chr4.4:86117678-86117697 | MS.gene052778:CDS | 55.0% | |
| !! | AGCCGAATGCAGGTGCTGAT+TGG | + | chr4.4:86117159-86117178 | MS.gene052778:intron | 55.0% |
| GCGGTGTCTGTTTCGTGCTC+TGG | + | chr4.4:86117081-86117100 | MS.gene052778:CDS | 60.0% | |
| TGCAGCATAGAGGCGGCAGT+CGG | + | chr4.4:86118684-86118703 | MS.gene052778:intron | 60.0% | |
| ! | GGGCAACCTGATTTCTGGGG+AGG | + | chr4.4:86118166-86118185 | MS.gene052778:CDS | 60.0% |
| CAGCATAGAGGCGGCAGTCG+GGG | + | chr4.4:86118686-86118705 | MS.gene052778:intron | 65.0% | |
| GCAGCATAGAGGCGGCAGTC+GGG | + | chr4.4:86118685-86118704 | MS.gene052778:intron | 65.0% | |
| AGAGGCGGCAGTCGGGGATC+TGG | + | chr4.4:86118692-86118711 | MS.gene052778:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 86115693 | 86118820 | 86115693 | ID=MS.gene052778 |
| chr4.4 | mRNA | 86115693 | 86118820 | 86115693 | ID=MS.gene052778.t1;Parent=MS.gene052778 |
| chr4.4 | exon | 86115693 | 86115714 | 86115693 | ID=MS.gene052778.t1.exon1;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86115693 | 86115714 | 86115693 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86115813 | 86115975 | 86115813 | ID=MS.gene052778.t1.exon2;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86115813 | 86115975 | 86115813 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86117018 | 86117102 | 86117018 | ID=MS.gene052778.t1.exon3;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86117018 | 86117102 | 86117018 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86117636 | 86117699 | 86117636 | ID=MS.gene052778.t1.exon4;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86117636 | 86117699 | 86117636 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86117948 | 86118053 | 86117948 | ID=MS.gene052778.t1.exon5;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86117948 | 86118053 | 86117948 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86118150 | 86118204 | 86118150 | ID=MS.gene052778.t1.exon6;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86118150 | 86118204 | 86118150 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86118515 | 86118568 | 86118515 | ID=MS.gene052778.t1.exon7;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86118515 | 86118568 | 86118515 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| chr4.4 | exon | 86118689 | 86118820 | 86118689 | ID=MS.gene052778.t1.exon8;Parent=MS.gene052778.t1 |
| chr4.4 | CDS | 86118689 | 86118820 | 86118689 | ID=cds.MS.gene052778.t1;Parent=MS.gene052778.t1 |
| Gene Sequence |
| Protein sequence |
