AlfalfaGEDB | MS.gene81745

M. sativa cultivar XinJiangDaYe / MS.gene81745

KEGG: K03531
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00091.28 PF12327.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81745.t1	XP_013467989.1	98	401	8	0	1	401	84	484	4.00E-214	753.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81745.t1	Q9LXJ0	82.8	389	62	2	13	401	90	473	2.2e-176	619.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81745.t1	A0A072VK74	98.0	401	8	0	1	401	84	484	2.9e-214	753.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene81745	0.816586	5.12E-52	-1.69E-46
MS.gene049297	MS.gene81745	0.829673	4.51E-55	-1.69E-46
MS.gene049378	MS.gene81745	0.812992	3.21E-51	-1.69E-46
MS.gene049758	MS.gene81745	0.846237	2.46E-59	-1.69E-46
MS.gene050226	MS.gene81745	0.827737	1.33E-54	-1.69E-46
MS.gene050227	MS.gene81745	0.842069	3.24E-58	-1.69E-46
MS.gene050228	MS.gene81745	0.835683	1.45E-56	-1.69E-46
MS.gene050330	MS.gene81745	-0.829802	4.20E-55	-1.69E-46
MS.gene050558	MS.gene81745	0.848372	6.39E-60	-1.69E-46
MS.gene050623	MS.gene81745	-0.820665	6.08E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81745.t1	MTR_1g060010	98.005	401	8	0	1	401	84	484	0.0	791
MS.gene81745.t1	MTR_7g104500	85.112	403	52	4	1	400	96	493	0.0	620
MS.gene81745.t1	MTR_7g104500	86.740	362	43	2	1	359	96	455	0.0	566
MS.gene81745.t1	MTR_3g055590	59.177	316	127	1	32	347	48	361	1.96e-111	333
MS.gene81745.t1	MTR_5g094120	58.163	294	121	1	54	347	74	365	3.95e-111	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81745.t1	AT3G52750	82.776	389	62	2	13	401	90	473	0.0	607
MS.gene81745.t1	AT3G52750	82.776	389	62	2	13	401	90	473	0.0	607
MS.gene81745.t1	AT3G52750	82.776	389	62	2	13	401	90	473	0.0	607
MS.gene81745.t1	AT2G36250	80.988	405	65	6	1	401	82	478	0.0	603
MS.gene81745.t1	AT2G36250	80.988	405	65	6	1	401	82	478	0.0	603
MS.gene81745.t1	AT2G36250	80.988	405	65	6	1	401	82	478	0.0	603
MS.gene81745.t1	AT2G36250	80.988	405	65	6	1	401	1	397	0.0	601
MS.gene81745.t1	AT3G52750	84.252	254	38	1	13	266	90	341	2.26e-136	394
MS.gene81745.t1	AT5G55280	56.395	344	146	2	6	347	38	379	1.38e-109	329

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Find 106 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGAACTACCCTTTCT+CGG	0.450362	1.3:+43501825	None:intergenic
AAAGTTATTGGTGTAGGAGG+TGG	0.478162	1.3:-43501735	MS.gene81745:CDS
AAATCAACATTTACCATCCC+AGG	0.484005	1.3:+43499683	None:intergenic
AACCGGATTCAAGCGTCAAG+AGG	0.644965	1.3:-43497416	MS.gene81745:CDS
AAGATTAAAGTTATTGGTGT+AGG	0.467049	1.3:-43501741	MS.gene81745:CDS
AAGCAGAGAGTCGATTGAAG+AGG	0.606090	1.3:-43501520	MS.gene81745:CDS
AAGGACGCTCACGCTATCCT+AGG	0.463769	1.3:-43497184	MS.gene81745:CDS
AATCAACATTTACCATCCCA+GGG	0.657201	1.3:+43499684	None:intergenic
AATCGGAGCACCACCTGTGC+CGG	0.521073	1.3:+43500069	None:intergenic
AATGCTGGTTCTTCACTGAT+GGG	0.476321	1.3:-43499635	MS.gene81745:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAATGCATGAACAAC+AGG	+	chr1.3:43499282-43499301	None:intergenic	30.0%
AATTATGAGTATGAATGGCA+TGG	+	chr1.3:43501707-43501726	None:intergenic	30.0%
ACAAGTGTATAAAGATCAGT+AGG	-	chr1.3:43501069-43501088	MS.gene81745:intron	30.0%
AGCATAACATTAATTGCAAC+CGG	-	chr1.3:43501606-43501625	MS.gene81745:CDS	30.0%
AGCTACTATATGACATCATT+GGG	+	chr1.3:43497792-43497811	None:intergenic	30.0%
AGTTATCAGTAGTTCAATCA+AGG	+	chr1.3:43497937-43497956	None:intergenic	30.0%
ATTAAAGTTATTGGTGTAGG+AGG	-	chr1.3:43497301-43497320	MS.gene81745:intron	30.0%
ATTGGTTAAGCAGTTAAAAC+GGG	+	chr1.3:43498429-43498448	None:intergenic	30.0%
CAAAATATGAAAAGGAAACC+TGG	+	chr1.3:43500000-43500019	None:intergenic	30.0%
CAATTGTGATAGAGAAAAGA+TGG	-	chr1.3:43498539-43498558	MS.gene81745:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	43497178	43501883	43497178	ID=MS.gene81745
chr1.3	mRNA	43497178	43501883	43497178	ID=MS.gene81745.t1;Parent=MS.gene81745
chr1.3	exon	43501488	43501883	43501488	ID=MS.gene81745.t1.exon1;Parent=MS.gene81745.t1
chr1.3	CDS	43501488	43501883	43501488	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43499811	43500110	43499811	ID=MS.gene81745.t1.exon2;Parent=MS.gene81745.t1
chr1.3	CDS	43499811	43500110	43499811	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43499618	43499708	43499618	ID=MS.gene81745.t1.exon3;Parent=MS.gene81745.t1
chr1.3	CDS	43499618	43499708	43499618	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43499295	43499419	43499295	ID=MS.gene81745.t1.exon4;Parent=MS.gene81745.t1
chr1.3	CDS	43499295	43499419	43499295	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43498243	43498335	43498243	ID=MS.gene81745.t1.exon5;Parent=MS.gene81745.t1
chr1.3	CDS	43498243	43498335	43498243	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43497393	43497458	43497393	ID=MS.gene81745.t1.exon6;Parent=MS.gene81745.t1
chr1.3	CDS	43497393	43497458	43497393	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1
chr1.3	exon	43497178	43497312	43497178	ID=MS.gene81745.t1.exon7;Parent=MS.gene81745.t1
chr1.3	CDS	43497178	43497312	43497178	ID=cds.MS.gene81745.t1;Parent=MS.gene81745.t1

Gene Sequence

>MS.gene81745

ATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGTAGTTCTAGTTTGGGTGAGGATTTGTCCGAGAGCTTAGGGGATATATCTAGTGAGAGTAATTACAATCAGGCGAAGATTAAAGTTATTGGTGTAGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCATGGAGTTGAGTTTTGGATTGTTAATACTGATGTACAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGCAGAGAGTCGATTGAAGAGGCGGTTTATGGAGCTGATATGGTCTTTGTTACAGTATGTTCAACTACTTTTCTTTAATTATAATTTCTGCACATTGAATTATATTTTACATTAGGAGTTTTCTTAGTATTTATCGGTCTAAATGTTACACCGTTGTACATGATTTACAAATATTAGTATATGTGTTAGGGATCAACTCCCTCAAACATTGACTTATTTTATATCTTAGATGTCCTCTCTCACTAGAGCTCTTTGAGCTAGAAGCGCGGCCCAATGATGTCATATAGTAGCTACAGCACTACAATATAACAGAAATTTAGTACAAAAGATCAAATAGCGGCTATAGCCTATAGCCCTGTAGTCCTACTTCACAGCAACATTTGAACTGCAATCTGCCGTCGACAACACTGACAGCCTTGATTGAACTACTGATAACTACTATTGAACACTTACGAGTGCTTTATGCTATGTTAGGCAATACCTCGTTATACAGTAGGGACAATGTAGTCAAATGCAAAAAGAAATTCTTTTTTTTTGAAGAAAAAAAAAAGAAATTCTTAATAAAAGTTTGTTATTATGATCATAAGTTAATCTTAGTGCACTCTGATATCAAATACAAATTTGGTTATTTGTGGTGTTTCTTTTAGTAGTGCAGGAGGAAATTTATCAAATAATTAGTTTCCTTTAAAGACAAGGGATCAACAGTTGATATTTATAACATCTTTAAGAATGCAAGACCCTGTTTTCTTTCAGAAAATATTTTCAGTTTTCATTTTTTAAAGGGTCTTGTTAACCAGTGCCCCGGGGGCACTGGTTAAGGAATCCAAAAGTAGAAAAATTGTCTTGGAAATATAAACTGTTACTTTTGACTAACTAATTATTACACCACTTTTTAATAAAATCTTACCCGTTTTAACTGCTTAACCAATGCCCCGAGGGCACTGGTTAACGTTCTCCTTTTTTAAAATATATGTTAATTTTAAATTGTTAACAAGTAGATGAAAGACTCGTGTAGGGAACAATTGTGATAGAGAAAAGATGGAATGAAAGGTAGAAAGAATGCATTTTTAGAAACAATGAAAACAATGTTTTGCCATTTTGAAAGTTTCTGAAAATGCTAGATCTATTTTACAAAATTATAAAAGAAAATGGTGAGGTGAGTATTGAATCTATATTATCTTGTGTTTGTCCTCGTGAGCTTAGCTCAGTCGGTAGGGACAATGCATAATATATGCAAGGTTCAAACCCCGGACACCACCAAAAAAATATTATCTTGTGTTTATTAGTAAGGGTGAAAATGAAAACATGAATACAAGAAGTAAACGGACCCTAAATTTTTCAAAATTTGGAACAGACGTGCTTGCGGTTCTTTTAAATTGTTCTTTGTTTGTACATTTTCCTAAACTTGAAAATTAAAATGAACTTTTGCAGGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATTATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGGATTGTCACGACCCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAGTATGAAATTGCTAATGATCTTTGCATTCCTGTTGTTCATGCATTATCTTTCTGTAACAAGTAAAATCAATAATGCTCATTGATTTTACTTACTGAGTGCAGATCCCTGGGATGGTAAATGTTGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCAACTGGTATGTATCAAAACTGAAAATTGTTTAGACTTCAATTTTTACCAATTCTACACTGCTTTTATTTTTCATTATTCTAATATTGAAGTGCAATTTAAGGCTCTTTTCTGCAATTGTTGGTTCAGAATTATGAGTGCATTTTAACTTTTGAACTTCATATATTATTGGAATTTATCTTATGACATTTTTTGTGTGTTCAAGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTGGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTGACTTTGTTTGAGGTGAGGGTGATCTTATGCTTTAATCTTTGCCAAGTATATGTTTCAGCTGTGCCCATGCTGTTCTTTTTTTTTTTCCCATCTCTTTGTTGTTTTTTAGCTTCTTTTTCCCTCCGTTCCTTTAAAATTTGAAACATCGTGGTACTGGGAAGTTGCTAGGGGCTCCTATATCCACCCTTGTCTATTAAATTTGAATCTTCATTTTCAAAATGCTATATACTCTTCTCATGAAGCCAGGTTTCCTTTTCATATTTTGGCATGTGGTAAGCTTTTAAATCAAATTAAAATTAAATTTTTGTTCTAATTAATTATTCAATTAAAGGAGGTTTTTTCTATCCTTGATTTCTTTAAATGTTTCTTAATTTTCTTCAATCAAGATTAAATAAAATAGGATACTCTAATAAATATTAAAATGGCCTGGTGGTGTTGGCTTGAGACCTTGGAGTATGCTCCCCAAGGTCTCTGGTTCGAGCCTCCTCGGTGCCAATTTGGGTGGGCTAGTTTAGTTTCTTCAAAAAAAAAGTATTTTTGCAAATTGTTATTGAAATCAGTATGTACTATTTAGGCTAATTTTTAGATTTTTCCAAAAATATGATTTTTAAATTATCTGCATTTTATATTTTTATGATCATAATCTTTCAAAATTTTGTTATATTTTTGCAAATAATCTTCTTATAGTCATGTATCCATTGGAATAATGTCTTCCATATTTTATATTGCAATTAGTATGAATTTTCTGTGGTTATGATATCAATTTGAGAGATCGATTCTAAAAATTTTGTTATTGAAAAGATTACATTTCCATAGTTTTACTTTTCTGTGAAGCGTTTTGCAAACTTCGACTTTTGTTGGAGCTAATACTTGTTTGAGGCGTAGCTATTCATAATCTTCTGTCTATTAAACTCATCATGGTCTTGCACTACCCTTTTGTATGCAATAGTTTTTAATAGAATCGTTTACAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCAAGTAAGTTAAACTATGTACTCTTTAACATATTTTTTTTGACTGAATGTAATCTTTGACATTAATCATAAGAAGTCATGCACTCATGCATGATATGCCACTATCCCACCGTTTATGAATTGTGCAATTTACAGCATTTCCGGGTATCCCTAGGAGAAGAAGATAATTGGCAATCATTCCTAGTTATAATAGTGTTTAGCAATTGACTTGTTTTAAACCATAAGAAATTCATAAATGATTTGAAATGGTTTGTACAAGTGTATAAAGATCAGTAGGTAGCTCGGTTAATGAGCTAAGAGACATCGAAATGATTCGATCTCTGGACATGAACATAACTACTACCACAAATATTTAGTCCTCAAAGAAATAGAGAATGTCCTTTTATCACTCTATGGACCACAAAACCCAAGTAATATTCAGAGAAAAGGACCAAACGGAAAAAATAAATACTTGATCAAGTTCAAATCTTGTACTGTGAGCTTCTCCGGTTATATTTTGTTTAGCTGGTATTTGGGGTTGAATACTTTTCAAACTTCATTTGATGAATATATAATCGGTTTAATTTTGATACACTGTTATTCTAAAAAGTTTTAAACTGACAACAAATTACAAACAATCATATATTTGATTTTAAAGCAGTTATGATAAAAAAAGTCAATCATTTATAATGATCTAATGATTTTGATTAATTGATATTGTAAAAAAGATTTACATTGTCGGTGTGAATGAATTAAATCCATATGGAATATGATCAACATGGTGAACCATGTCATTTGATTTAATATAGGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGGTATAATTCAAATCTCCCTCTCATTCCCTCTCCATCCATGCCATTCATACTCATAATTCTGATTCATGTTCTAAACACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCAGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATACCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>MS.gene81745.t1

MLRGEASSTVNVPRKGSSSLGEDLSESLGDISSESNYNQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESRESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGQVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNQRPSSFSDDGSLFEIPDFLKKKGRSRYPRV