Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57162.t1 | XP_003611671.1 | 93.4 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 7.70E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57162.t1 | O48670 | 67.9 | 112 | 36 | 0 | 17 | 128 | 75 | 186 | 5.6e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57162.t1 | G7K592 | 93.4 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 5.5e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene57162 | -0.814263 | 1.68E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene57162 | -0.810794 | 9.66E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene57162 | -0.846845 | 1.68E-59 | -1.69E-46 |
| MS.gene04933 | MS.gene57162 | -0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene57162 | -0.867447 | 1.36E-65 | -1.69E-46 |
| MS.gene049382 | MS.gene57162 | -0.814435 | 1.54E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene57162 | -0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene57162 | -0.814323 | 1.63E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene57162 | 0.807199 | 5.68E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene57162 | -0.842123 | 3.13E-58 | -1.69E-46 |
| MS.gene049877 | MS.gene57162 | -0.806388 | 8.43E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene57162 | -0.809073 | 2.27E-50 | -1.69E-46 |
| MS.gene049919 | MS.gene57162 | -0.807951 | 3.93E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene57162 | -0.874667 | 5.65E-68 | -1.69E-46 |
| MS.gene050227 | MS.gene57162 | -0.890358 | 1.06E-73 | -1.69E-46 |
| MS.gene050228 | MS.gene57162 | -0.882372 | 1.10E-70 | -1.69E-46 |
| MS.gene050319 | MS.gene57162 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene57162 | 0.855296 | 6.94E-62 | -1.69E-46 |
| MS.gene050442 | MS.gene57162 | -0.843181 | 1.64E-58 | -1.69E-46 |
| MS.gene050516 | MS.gene57162 | -0.801338 | 9.44E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene57162 | 0.893693 | 4.96E-75 | -1.69E-46 |
| MS.gene050629 | MS.gene57162 | 0.837965 | 3.81E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene57162 | -0.832187 | 1.09E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene57162 | -0.82918 | 5.95E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene57162 | -0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene57162 | -0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene57162 | -0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene57162 | -0.862791 | 3.95E-64 | -1.69E-46 |
| MS.gene050763 | MS.gene57162 | -0.864121 | 1.53E-64 | -1.69E-46 |
| MS.gene050787 | MS.gene57162 | -0.860597 | 1.85E-63 | -1.69E-46 |
| MS.gene050807 | MS.gene57162 | -0.803577 | 3.26E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene57162 | -0.804276 | 2.34E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene57162 | -0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene050824 | MS.gene57162 | -0.833147 | 6.30E-56 | -1.69E-46 |
| MS.gene05119 | MS.gene57162 | 0.833112 | 6.43E-56 | -1.69E-46 |
| MS.gene051210 | MS.gene57162 | -0.803969 | 2.70E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene57162 | -0.808286 | 3.34E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene57162 | -0.803817 | 2.91E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene57162 | -0.857632 | 1.43E-62 | -1.69E-46 |
| MS.gene051983 | MS.gene57162 | -0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene052012 | MS.gene57162 | -0.802084 | 6.63E-49 | -1.69E-46 |
| MS.gene052048 | MS.gene57162 | 0.80205 | 6.74E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene57162 | -0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene57162 | -0.835899 | 1.28E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene57162 | -0.825256 | 5.18E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene57162 | 0.829245 | 5.73E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene57162 | -0.81727 | 3.60E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene57162 | 0.825111 | 5.60E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene57162 | -0.837368 | 5.42E-57 | -1.69E-46 |
| MS.gene052384 | MS.gene57162 | -0.813773 | 2.16E-51 | -1.69E-46 |
| MS.gene052389 | MS.gene57162 | -0.812765 | 3.60E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene57162 | -0.819177 | 1.33E-52 | -1.69E-46 |
| MS.gene052673 | MS.gene57162 | 0.810963 | 8.87E-51 | -1.69E-46 |
| MS.gene052778 | MS.gene57162 | -0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene57162 | -0.822069 | 2.88E-53 | -1.69E-46 |
| MS.gene052858 | MS.gene57162 | -0.839027 | 2.02E-57 | -1.69E-46 |
| MS.gene052860 | MS.gene57162 | -0.839298 | 1.72E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene57162 | -0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene57162 | -0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene57162 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene053085 | MS.gene57162 | -0.806955 | 6.40E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene57162 | -0.814989 | 1.16E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene57162 | -0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene57162 | -0.861577 | 9.30E-64 | -1.69E-46 |
| MS.gene054184 | MS.gene57162 | -0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene57162 | -0.817547 | 3.12E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene57162 | 0.813002 | 3.19E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene57162 | -0.871748 | 5.39E-67 | -1.69E-46 |
| MS.gene054467 | MS.gene57162 | -0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene57162 | -0.839622 | 1.42E-57 | -1.69E-46 |
| MS.gene054472 | MS.gene57162 | -0.821856 | 3.23E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene57162 | -0.850354 | 1.79E-60 | -1.69E-46 |
| MS.gene054542 | MS.gene57162 | -0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene054667 | MS.gene57162 | -0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene57162 | -0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene57162 | -0.849753 | 2.64E-60 | -1.69E-46 |
| MS.gene054942 | MS.gene57162 | -0.850603 | 1.53E-60 | -1.69E-46 |
| MS.gene054983 | MS.gene57162 | -0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene57162 | -0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene57162 | -0.817938 | 2.54E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene57162 | -0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene57162 | -0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene055815 | MS.gene57162 | 0.801053 | 1.08E-48 | -1.69E-46 |
| MS.gene055816 | MS.gene57162 | 0.841034 | 6.07E-58 | -1.69E-46 |
| MS.gene056069 | MS.gene57162 | 0.878509 | 2.65E-69 | -1.69E-46 |
| MS.gene056400 | MS.gene57162 | -0.815297 | 9.94E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene57162 | -0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene056552 | MS.gene57162 | -0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene056589 | MS.gene57162 | -0.806967 | 6.36E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene57162 | -0.840102 | 1.06E-57 | -1.69E-46 |
| MS.gene056979 | MS.gene57162 | -0.818005 | 2.46E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene57162 | -0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene57162 | -0.824684 | 7.07E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene57162 | -0.822297 | 2.55E-53 | -1.69E-46 |
| MS.gene057929 | MS.gene57162 | -0.814237 | 1.71E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene57162 | -0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene57162 | -0.812366 | 4.40E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene57162 | -0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene058139 | MS.gene57162 | -0.829995 | 3.77E-55 | -1.69E-46 |
| MS.gene058168 | MS.gene57162 | -0.82785 | 1.25E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene57162 | -0.823764 | 1.16E-53 | -1.69E-46 |
| MS.gene058399 | MS.gene57162 | -0.842305 | 2.80E-58 | -1.69E-46 |
| MS.gene058636 | MS.gene57162 | -0.809825 | 1.56E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene57162 | -0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene059033 | MS.gene57162 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene059249 | MS.gene57162 | -0.811205 | 7.87E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene57162 | -0.816597 | 5.09E-52 | -1.69E-46 |
| MS.gene059789 | MS.gene57162 | -0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene57162 | -0.845495 | 3.92E-59 | -1.69E-46 |
| MS.gene060137 | MS.gene57162 | 0.857433 | 1.64E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene57162 | -0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene060404 | MS.gene57162 | -0.834073 | 3.70E-56 | -1.69E-46 |
| MS.gene060480 | MS.gene57162 | -0.831845 | 1.33E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene57162 | -0.823144 | 1.62E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene57162 | -0.809859 | 1.54E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene57162 | 0.821705 | 3.50E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene57162 | -0.844548 | 7.06E-59 | -1.69E-46 |
| MS.gene060685 | MS.gene57162 | -0.841123 | 5.75E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene57162 | -0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene57162 | -0.838676 | 2.50E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene57162 | -0.81096 | 8.89E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene57162 | 0.837472 | 5.09E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene57162 | -0.80235 | 5.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57162.t1 | MTR_5g016560 | 93.443 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 4.45e-79 | 232 |
| MS.gene57162.t1 | MTR_5g016560 | 92.308 | 104 | 8 | 0 | 17 | 120 | 87 | 190 | 9.48e-65 | 196 |
| MS.gene57162.t1 | MTR_4g094930 | 78.151 | 119 | 25 | 1 | 17 | 135 | 72 | 189 | 3.56e-62 | 189 |
| MS.gene57162.t1 | MTR_4g070400 | 68.868 | 106 | 33 | 0 | 17 | 122 | 76 | 181 | 1.97e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57162.t1 | AT4G39220 | 65.517 | 116 | 40 | 0 | 17 | 132 | 75 | 190 | 1.94e-54 | 169 |
| MS.gene57162.t1 | AT4G39220 | 65.517 | 116 | 40 | 0 | 17 | 132 | 75 | 190 | 1.94e-54 | 169 |
| MS.gene57162.t1 | AT2G21600 | 62.295 | 122 | 45 | 1 | 17 | 138 | 75 | 195 | 5.16e-52 | 163 |
| MS.gene57162.t1 | AT2G23310 | 67.925 | 106 | 33 | 1 | 27 | 132 | 107 | 211 | 7.82e-46 | 148 |
| MS.gene57162.t1 | AT2G23310 | 67.925 | 106 | 32 | 2 | 27 | 132 | 107 | 210 | 8.43e-44 | 143 |
| MS.gene57162.t1 | AT2G18240 | 62.136 | 103 | 38 | 1 | 17 | 119 | 79 | 180 | 1.28e-37 | 127 |
| MS.gene57162.t1 | AT2G18240 | 62.136 | 103 | 38 | 1 | 17 | 119 | 79 | 180 | 1.31e-37 | 127 |
Find 35 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTATACTCCTCTTCTAC+TGG | 0.286487 | 5.2:+8270128 | MS.gene57162:CDS |
| CGTTTGATATTCCAGTCTTC+TGG | 0.311008 | 5.2:+8270107 | MS.gene57162:CDS |
| AGATATGTACCGTTCAATTT+CGG | 0.357992 | 5.2:+8270205 | MS.gene57162:CDS |
| ACCGTTCAATTTCGGAAAAC+AGG | 0.388365 | 5.2:+8270213 | MS.gene57162:CDS |
| CTCCGCGTCTACTTCTTAGA+AGG | 0.426734 | 5.2:+8268662 | MS.gene57162:CDS |
| AACTCATCGGAAGCTCTAAT+AGG | 0.427663 | 5.2:-8268797 | None:intergenic |
| GCCTCCCTGAGTTCAAGTTC+TGG | 0.451201 | 5.2:+8268837 | MS.gene57162:CDS |
| TCAGCGGCGTCGGCGACGGC+GGG | 0.451738 | 5.2:-8268761 | None:intergenic |
| AGGAGTATAGGCCAGAAGAC+TGG | 0.477362 | 5.2:-8270118 | None:intergenic |
| GTCAGCGGCGTCGGCGACGG+CGG | 0.477787 | 5.2:-8268762 | None:intergenic |
| ACCGTCAGCGGCGTCGGCGA+CGG | 0.481145 | 5.2:-8268765 | None:intergenic |
| GCCGTCGCCGACGCCGCTGA+CGG | 0.482016 | 5.2:+8268764 | MS.gene57162:CDS |
| GCCTATACTCCTCTTCTACT+GGG | 0.482573 | 5.2:+8270129 | MS.gene57162:CDS |
| AACTGAAAATTTCAGTCCAC+AGG | 0.507776 | 5.2:-8270411 | None:intergenic |
| ACCCAGTAGAAGAGGAGTAT+AGG | 0.512859 | 5.2:-8270130 | None:intergenic |
| AGTAGGACCGTCAGCGGCGT+CGG | 0.515054 | 5.2:-8268771 | None:intergenic |
| TATTACCAGAACTTGAACTC+AGG | 0.516687 | 5.2:-8268842 | None:intergenic |
| TCAGGGAGGCGGCGAACGAA+AGG | 0.517684 | 5.2:-8268824 | None:intergenic |
| ACAAGACCACCCAGTAGAAG+AGG | 0.526419 | 5.2:-8270138 | None:intergenic |
| TACGTGCTACCGCGATGGAT+AGG | 0.536752 | 5.2:+8268611 | None:intergenic |
| TCTTGTTCTCGCTTACTATG+AGG | 0.536784 | 5.2:+8270155 | MS.gene57162:CDS |
| ACGTGCTACCGCGATGGATA+GGG | 0.540998 | 5.2:+8268612 | None:intergenic |
| GGAGGCGGCGAACGAAAGGA+CGG | 0.592422 | 5.2:-8268820 | None:intergenic |
| TGTTCTCGCTTACTATGAGG+AGG | 0.593117 | 5.2:+8270158 | MS.gene57162:CDS |
| ATTACCAGAACTTGAACTCA+GGG | 0.599316 | 5.2:-8268841 | None:intergenic |
| GAAGCTCTAATAGGAAGAGT+AGG | 0.606900 | 5.2:-8268788 | None:intergenic |
| AGGAAGAGTAGGACCGTCAG+CGG | 0.634957 | 5.2:-8268777 | None:intergenic |
| AGAAAGCACAAGTCTTCCTG+TGG | 0.635231 | 5.2:+8270395 | MS.gene57162:CDS |
| AGAACTTGAACTCAGGGAGG+CGG | 0.636334 | 5.2:-8268835 | None:intergenic |
| AACGAAAGGACGGAACTCAT+CGG | 0.637257 | 5.2:-8268810 | None:intergenic |
| TATACTCCTCTTCTACTGGG+TGG | 0.667420 | 5.2:+8270132 | MS.gene57162:CDS |
| AGCCTTCTAAGAAGTAGACG+CGG | 0.688638 | 5.2:-8268664 | None:intergenic |
| CTTCTAAGAAGTAGACGCGG+AGG | 0.701782 | 5.2:-8268661 | None:intergenic |
| ACCAGAACTTGAACTCAGGG+AGG | 0.720457 | 5.2:-8268838 | None:intergenic |
| GGGCAGGTACTCGATCACAG+TGG | 0.793101 | 5.2:+8270048 | MS.gene57162:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTCATAAATTATAT+TGG | - | chr5.2:8269735-8269754 | None:intergenic | 10.0% |
| !! | AAATTATATTGGATAGCTTA+TGG | - | chr5.2:8269724-8269743 | None:intergenic | 20.0% |
| !! | TGCATAATTATTGTTAAATG+TGG | + | chr5.2:8269049-8269068 | MS.gene57162:intron | 20.0% |
| !!! | ATCGTTTAATTGATTGATTT+TGG | + | chr5.2:8268885-8268904 | MS.gene57162:intron | 20.0% |
| !!! | TAATTGATTGATTTTGGTAT+AGG | + | chr5.2:8268891-8268910 | MS.gene57162:intron | 20.0% |
| ! | AATTATGCACAATATCATCA+AGG | - | chr5.2:8269038-8269057 | None:intergenic | 25.0% |
| ! | ATTAAGTTCTTTATCCAAAG+AGG | + | chr5.2:8269854-8269873 | MS.gene57162:intron | 25.0% |
| ! | TATGGAAACAACTTATGATA+GGG | + | chr5.2:8269674-8269693 | MS.gene57162:intron | 25.0% |
| ! | TTACATATGTTGACATACAA+TGG | - | chr5.2:8269347-8269366 | None:intergenic | 25.0% |
| ! | TTATGGAAACAACTTATGAT+AGG | + | chr5.2:8269673-8269692 | MS.gene57162:intron | 25.0% |
| ! | TTTGTTAGATAGTTGTTAGT+TGG | + | chr5.2:8269298-8269317 | MS.gene57162:intron | 25.0% |
| !! | CTTCTCATCAAAATTTCTTT+TGG | - | chr5.2:8269160-8269179 | None:intergenic | 25.0% |
| !!! | AGTTTCTTTTTCACTTAGTA+AGG | + | chr5.2:8269980-8269999 | MS.gene57162:intron | 25.0% |
| !!! | TTGTGTTGATTGTTGTTATA+AGG | + | chr5.2:8270290-8270309 | MS.gene57162:intron | 25.0% |
| AGATATGTACCGTTCAATTT+CGG | + | chr5.2:8270205-8270224 | MS.gene57162:CDS | 30.0% | |
| CCTAAAACAACATATCAATG+TGG | - | chr5.2:8269897-8269916 | None:intergenic | 30.0% | |
| GTATATGATGAGAGTTTACT+GGG | + | chr5.2:8269827-8269846 | MS.gene57162:intron | 30.0% | |
| TTAGATGATGTTGTCTTCTT+CGG | + | chr5.2:8269934-8269953 | MS.gene57162:intron | 30.0% | |
| ! | TTCTCTTCATTTTCTTCACA+GGG | + | chr5.2:8269439-8269458 | MS.gene57162:intron | 30.0% |
| !!! | CCACATTGATATGTTGTTTT+AGG | + | chr5.2:8269894-8269913 | MS.gene57162:intron | 30.0% |
| ACGAAGTGTGTATAAACTGA+CGG | - | chr5.2:8268981-8269000 | None:intergenic | 35.0% | |
| ATGAAGAGAACCATAGAATG+TGG | - | chr5.2:8269429-8269448 | None:intergenic | 35.0% | |
| ATTACCAGAACTTGAACTCA+GGG | - | chr5.2:8268844-8268863 | None:intergenic | 35.0% | |
| CGTATATGATGAGAGTTTAC+TGG | + | chr5.2:8269826-8269845 | MS.gene57162:intron | 35.0% | |
| GAAGACAACATCATCTAAGT+AGG | - | chr5.2:8269932-8269951 | None:intergenic | 35.0% | |
| TACATCCTCAATCTTCTCAT+CGG | + | chr5.2:8268716-8268735 | MS.gene57162:intron | 35.0% | |
| TATTACCAGAACTTGAACTC+AGG | - | chr5.2:8268845-8268864 | None:intergenic | 35.0% | |
| TCAAATAAACCAACCCAAAC+AGG | - | chr5.2:8269465-8269484 | None:intergenic | 35.0% | |
| TGACGGTAATGAATGATTGA+CGG | - | chr5.2:8268964-8268983 | None:intergenic | 35.0% | |
| ! | ACCTGTTTTCCGAAATTGAA+CGG | - | chr5.2:8270217-8270236 | None:intergenic | 35.0% |
| ! | AGCTGCTCAATTTTCTTTTG+TGG | + | chr5.2:8270027-8270046 | MS.gene57162:intron | 35.0% |
| ! | CAATCTAGCTTGCAATATCA+AGG | - | chr5.2:8269093-8269112 | None:intergenic | 35.0% |
| ! | GCTGCTCAATTTTCTTTTGT+GGG | + | chr5.2:8270028-8270047 | MS.gene57162:intron | 35.0% |
| ! | GTTCTCTTCATTTTCTTCAC+AGG | + | chr5.2:8269438-8269457 | MS.gene57162:intron | 35.0% |
| ! | TTGTTGTTGTGATTGTTGTG+TGG | + | chr5.2:8270252-8270271 | MS.gene57162:intron | 35.0% |
| AATGTGGAAGACCCAAACTA+TGG | - | chr5.2:8269881-8269900 | None:intergenic | 40.0% | |
| ACCGTTCAATTTCGGAAAAC+AGG | + | chr5.2:8270213-8270232 | MS.gene57162:CDS | 40.0% | |
| ACTTCGTTCTCGTGTGATTA+AGG | + | chr5.2:8268994-8269013 | MS.gene57162:intron | 40.0% | |
| AGAACCATAGAATGTGGTTG+AGG | - | chr5.2:8269423-8269442 | None:intergenic | 40.0% | |
| AGACTGTTTCAGAGAGCTTA+TGG | + | chr5.2:8269656-8269675 | MS.gene57162:intron | 40.0% | |
| ATCCAAAGAGGACCATAGTT+TGG | + | chr5.2:8269866-8269885 | MS.gene57162:intron | 40.0% | |
| CGTTTGATATTCCAGTCTTC+TGG | + | chr5.2:8270107-8270126 | MS.gene57162:CDS | 40.0% | |
| TCCAAAGAGGACCATAGTTT+GGG | + | chr5.2:8269867-8269886 | MS.gene57162:intron | 40.0% | |
| TCTTGTTCTCGCTTACTATG+AGG | + | chr5.2:8270155-8270174 | MS.gene57162:CDS | 40.0% | |
| ! | AACTCATCGGAAGCTCTAAT+AGG | - | chr5.2:8268800-8268819 | None:intergenic | 40.0% |
| ! | CTCAATTTTCTTTTGTGGGC+AGG | + | chr5.2:8270032-8270051 | MS.gene57162:intron | 40.0% |
| ! | GAAGCTCTAATAGGAAGAGT+AGG | - | chr5.2:8268791-8268810 | None:intergenic | 40.0% |
| ! | GATGTTGTCTTCTTCGGTTT+TGG | + | chr5.2:8269940-8269959 | MS.gene57162:intron | 40.0% |
| AACGAAAGGACGGAACTCAT+CGG | - | chr5.2:8268813-8268832 | None:intergenic | 45.0% | |
| ACCCAAACTATGGTCCTCTT+TGG | - | chr5.2:8269871-8269890 | None:intergenic | 45.0% | |
| CACTTAGTAAGGTCTGCAGA+AGG | + | chr5.2:8269991-8270010 | MS.gene57162:intron | 45.0% | |
| GAGTCCTCAACCACATTCTA+TGG | + | chr5.2:8269416-8269435 | MS.gene57162:intron | 45.0% | |
| GCCTATACTCCTCTTCTACT+GGG | + | chr5.2:8270129-8270148 | MS.gene57162:CDS | 45.0% | |
| GGAAACCGATGAGAAGATTG+AGG | - | chr5.2:8268724-8268743 | None:intergenic | 45.0% | |
| TATACTCCTCTTCTACTGGG+TGG | + | chr5.2:8270132-8270151 | MS.gene57162:CDS | 45.0% | |
| TGCAAGCTAGATTGTGCATG+CGG | + | chr5.2:8269099-8269118 | MS.gene57162:intron | 45.0% | |
| TGTTCTCGCTTACTATGAGG+AGG | + | chr5.2:8270158-8270177 | MS.gene57162:CDS | 45.0% | |
| TTTCTTCACAGGGCCTGTTT+GGG | + | chr5.2:8269449-8269468 | MS.gene57162:intron | 45.0% | |
| ! | ACCCAGTAGAAGAGGAGTAT+AGG | - | chr5.2:8270133-8270152 | None:intergenic | 45.0% |
| ! | AGAAAGCACAAGTCTTCCTG+TGG | + | chr5.2:8270395-8270414 | MS.gene57162:CDS | 45.0% |
| ! | AGCCTTCTAAGAAGTAGACG+CGG | - | chr5.2:8268667-8268686 | None:intergenic | 45.0% |
| ! | TTTTCTTCACAGGGCCTGTT+TGG | + | chr5.2:8269448-8269467 | MS.gene57162:intron | 45.0% |
| ACAAGACCACCCAGTAGAAG+AGG | - | chr5.2:8270141-8270160 | None:intergenic | 50.0% | |
| ACCAGAACTTGAACTCAGGG+AGG | - | chr5.2:8268841-8268860 | None:intergenic | 50.0% | |
| AGAACTTGAACTCAGGGAGG+CGG | - | chr5.2:8268838-8268857 | None:intergenic | 50.0% | |
| CTCCGCGTCTACTTCTTAGA+AGG | + | chr5.2:8268662-8268681 | MS.gene57162:CDS | 50.0% | |
| GGCCTATACTCCTCTTCTAC+TGG | + | chr5.2:8270128-8270147 | MS.gene57162:CDS | 50.0% | |
| GGCTTCTACGTCGTTACGTA+CGG | + | chr5.2:8268683-8268702 | MS.gene57162:intron | 50.0% | |
| GTGGTTGAGGACTCAGAAAC+TGG | - | chr5.2:8269410-8269429 | None:intergenic | 50.0% | |
| TACGTCGTTACGTACGGTCT+TGG | + | chr5.2:8268689-8268708 | MS.gene57162:intron | 50.0% | |
| ! | AGGAGTATAGGCCAGAAGAC+TGG | - | chr5.2:8270121-8270140 | None:intergenic | 50.0% |
| ! | CTTCTAAGAAGTAGACGCGG+AGG | - | chr5.2:8268664-8268683 | None:intergenic | 50.0% |
| AGGAAGAGTAGGACCGTCAG+CGG | - | chr5.2:8268780-8268799 | None:intergenic | 55.0% | |
| TTCACAGGGCCTGTTTGGGT+TGG | + | chr5.2:8269453-8269472 | MS.gene57162:intron | 55.0% | |
| ! | GCCTCCCTGAGTTCAAGTTC+TGG | + | chr5.2:8268837-8268856 | MS.gene57162:CDS | 55.0% |
| GGGCAGGTACTCGATCACAG+TGG | + | chr5.2:8270048-8270067 | MS.gene57162:intron | 60.0% | |
| !! | CATCGGTTTCCTCTCCCCTC+AGG | + | chr5.2:8268733-8268752 | MS.gene57162:intron | 60.0% |
| AGTAGGACCGTCAGCGGCGT+CGG | - | chr5.2:8268774-8268793 | None:intergenic | 65.0% | |
| CGACGGCGGGATCAACCTGA+GGG | - | chr5.2:8268751-8268770 | None:intergenic | 65.0% | |
| CGGGATCAACCTGAGGGGAG+AGG | - | chr5.2:8268745-8268764 | None:intergenic | 65.0% | |
| GACGGCGGGATCAACCTGAG+GGG | - | chr5.2:8268750-8268769 | None:intergenic | 65.0% | |
| GGAGGCGGCGAACGAAAGGA+CGG | - | chr5.2:8268823-8268842 | None:intergenic | 65.0% | |
| TCAGGGAGGCGGCGAACGAA+AGG | - | chr5.2:8268827-8268846 | None:intergenic | 65.0% | |
| GCGACGGCGGGATCAACCTG+AGG | - | chr5.2:8268752-8268771 | None:intergenic | 70.0% | |
| !! | ACCGTCAGCGGCGTCGGCGA+CGG | - | chr5.2:8268768-8268787 | None:intergenic | 75.0% |
| ! | GCCGTCGCCGACGCCGCTGA+CGG | + | chr5.2:8268764-8268783 | MS.gene57162:CDS | 80.0% |
| !!! | GTCAGCGGCGTCGGCGACGG+CGG | - | chr5.2:8268765-8268784 | None:intergenic | 80.0% |
| !!! | TCAGCGGCGTCGGCGACGGC+GGG | - | chr5.2:8268764-8268783 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 8268625 | 8270422 | 8268625 | ID=MS.gene57162 |
| chr5.2 | mRNA | 8268625 | 8270422 | 8268625 | ID=MS.gene57162.t1;Parent=MS.gene57162 |
| chr5.2 | exon | 8268625 | 8268699 | 8268625 | ID=MS.gene57162.t1.exon1;Parent=MS.gene57162.t1 |
| chr5.2 | CDS | 8268625 | 8268699 | 8268625 | ID=cds.MS.gene57162.t1;Parent=MS.gene57162.t1 |
| chr5.2 | exon | 8268755 | 8268858 | 8268755 | ID=MS.gene57162.t1.exon2;Parent=MS.gene57162.t1 |
| chr5.2 | CDS | 8268755 | 8268858 | 8268755 | ID=cds.MS.gene57162.t1;Parent=MS.gene57162.t1 |
| chr5.2 | exon | 8270054 | 8270234 | 8270054 | ID=MS.gene57162.t1.exon3;Parent=MS.gene57162.t1 |
| chr5.2 | CDS | 8270054 | 8270234 | 8270054 | ID=cds.MS.gene57162.t1;Parent=MS.gene57162.t1 |
| chr5.2 | exon | 8270366 | 8270422 | 8270366 | ID=MS.gene57162.t1.exon4;Parent=MS.gene57162.t1 |
| chr5.2 | CDS | 8270366 | 8270422 | 8270366 | ID=cds.MS.gene57162.t1;Parent=MS.gene57162.t1 |
| Gene Sequence |
| Protein sequence |
