AlfalfaGEDB | MS.gene57160

M. sativa cultivar XinJiangDaYe / MS.gene57160

KEGG: -
GO: GO:0005575 GO:0016021 GO:0031224 GO:0110165
PFAM: PF03248.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57160.t1	XP_003611671.1	93.4	122	8	0	17	138	87	208	7.70E-56	226.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57160.t1	O48670	67.9	112	36	0	17	128	75	186	5.6e-39	161.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57160.t1	G7K592	93.4	122	8	0	17	138	87	208	5.5e-56	226.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene57160	-0.811731	6.05E-51	-1.69E-46
MS.gene049159	MS.gene57160	-0.810794	9.66E-51	-1.69E-46
MS.gene049297	MS.gene57160	-0.834326	3.20E-56	-1.69E-46
MS.gene04933	MS.gene57160	-0.814922	1.20E-51	-1.69E-46
MS.gene049378	MS.gene57160	-0.860143	2.54E-63	-1.69E-46
MS.gene049382	MS.gene57160	-0.804136	2.50E-49	-1.69E-46
MS.gene049435	MS.gene57160	-0.834724	2.54E-56	-1.69E-46
MS.gene049501	MS.gene57160	-0.837402	5.31E-57	-1.69E-46
MS.gene049758	MS.gene57160	-0.813334	2.70E-51	-1.69E-46
MS.gene049850	MS.gene57160	-0.813244	2.82E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57160.t1	MTR_5g016560	93.443	122	8	0	17	138	87	208	4.45e-79	232
MS.gene57160.t1	MTR_5g016560	92.308	104	8	0	17	120	87	190	9.48e-65	196
MS.gene57160.t1	MTR_4g094930	78.151	119	25	1	17	135	72	189	3.56e-62	189
MS.gene57160.t1	MTR_4g070400	68.868	106	33	0	17	122	76	181	1.97e-48	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57160.t1	AT4G39220	65.517	116	40	0	17	132	75	190	1.94e-54	169
MS.gene57160.t1	AT4G39220	65.517	116	40	0	17	132	75	190	1.94e-54	169
MS.gene57160.t1	AT2G21600	62.295	122	45	1	17	138	75	195	5.16e-52	163
MS.gene57160.t1	AT2G23310	67.925	106	33	1	27	132	107	211	7.82e-46	148
MS.gene57160.t1	AT2G23310	67.925	106	32	2	27	132	107	210	8.43e-44	143
MS.gene57160.t1	AT2G18240	62.136	103	38	1	17	119	79	180	1.28e-37	127
MS.gene57160.t1	AT2G18240	62.136	103	38	1	17	119	79	180	1.31e-37	127

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Find 35 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAAAGGACGGAACTCAT+CGG	0.637257	5.2:-8282110	None:intergenic
AACTCATCGGAAGCTCTAAT+AGG	0.427663	5.2:-8282097	None:intergenic
AACTGAAAATTTCAGTCCAC+AGG	0.507776	5.2:-8283712	None:intergenic
ACAAGACCACCCAGTAGAAG+AGG	0.526419	5.2:-8283439	None:intergenic
ACCAGAACTTGAACTCAGGG+AGG	0.720457	5.2:-8282138	None:intergenic
ACCCAGTAGAAGAGGAGTAT+AGG	0.512859	5.2:-8283431	None:intergenic
ACCGTCAGCGGCGTCGGCGA+CGG	0.481145	5.2:-8282065	None:intergenic
ACCGTTCAATTTCGGAAAAC+AGG	0.388365	5.2:+8283514	MS.gene57160:CDS
ACGTGCTACCGCGATGGATA+GGG	0.540998	5.2:+8281912	None:intergenic
AGAAAGCACAAGTCTTCCTG+TGG	0.635231	5.2:+8283696	MS.gene57160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATATGTACCGTTCAATTT+CGG	+	chr5.2:8283506-8283525	MS.gene57160:CDS	30.0%
CCTAAAACAACATATCAATG+TGG	-	chr5.2:8283198-8283217	None:intergenic	30.0%
GTATATGATGAGAGTTTACT+GGG	+	chr5.2:8283128-8283147	MS.gene57160:intron	30.0%
TTAGATGATGTTGTCTTCTT+CGG	+	chr5.2:8283235-8283254	MS.gene57160:intron	30.0%
ACGAAGTGTGTATAAACTGA+CGG	-	chr5.2:8282281-8282300	None:intergenic	35.0%
ATGAAGAGAACCATAGAATG+TGG	-	chr5.2:8282730-8282749	None:intergenic	35.0%
ATTACCAGAACTTGAACTCA+GGG	-	chr5.2:8282144-8282163	None:intergenic	35.0%
CGTATATGATGAGAGTTTAC+TGG	+	chr5.2:8283127-8283146	MS.gene57160:intron	35.0%
GAAGACAACATCATCTAAGT+AGG	-	chr5.2:8283233-8283252	None:intergenic	35.0%
TACATCCTCAATCTTCTCAT+CGG	+	chr5.2:8282016-8282035	MS.gene57160:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	8281925	8283723	8281925	ID=MS.gene57160
chr5.2	mRNA	8281925	8283723	8281925	ID=MS.gene57160.t1;Parent=MS.gene57160
chr5.2	exon	8281925	8281999	8281925	ID=MS.gene57160.t1.exon1;Parent=MS.gene57160.t1
chr5.2	CDS	8281925	8281999	8281925	ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1
chr5.2	exon	8282055	8282158	8282055	ID=MS.gene57160.t1.exon2;Parent=MS.gene57160.t1
chr5.2	CDS	8282055	8282158	8282055	ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1
chr5.2	exon	8283355	8283535	8283355	ID=MS.gene57160.t1.exon3;Parent=MS.gene57160.t1
chr5.2	CDS	8283355	8283535	8283355	ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1
chr5.2	exon	8283667	8283723	8283667	ID=MS.gene57160.t1.exon4;Parent=MS.gene57160.t1
chr5.2	CDS	8283667	8283723	8283667	ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1

Gene Sequence

>MS.gene57160

ATGGATAGGGTTTTCGGTCGTCGCTTTCATCTACATCCTCCGCGTCTACTTCTTAGAAGGCTTCTACGTCGTTACGTACGGTCTTGGCATTTACATCCTCAATCTTCTCATCGGTTTCCTCTCCCCTCAGGTTGATCCCGCCGTCGCCGACGCCGCTGACGGTCCTACTCTTCCTATTAGAGCTTCCGATGAGTTCCGTCCTTTCGTTCGCCGCCTCCCTGAGTTCAAGTTCTGGTAATACTTCAATTTGATTATCAATTATCGTTTAATTGATTGATTTTGGTATAGGATTTAATTCATATACACTGTCAGTGTAAAGAGTTATGAGTTTTTACACCGTCAATCATTCATTACCGTCAGTTTATACACACTTCGTTCTCGTGTGATTAAGGTTATAGTTGCGTTATGATCCTTGATGATATTGTGCATAATTATTGTTAAATGTGGTTGATAATTGATGTTGTACCTTGATATTGCAAGCTAGATTGTGCATGCGGACATTCATTTAAAACGTTCTATGTGATGATGAGTTCCAAAAAGAAATTTTGATGAGAAGAATGTTTTGCTGTTAGTTTCTTATTATGATCTTTGTCGATGTATCGAAAACAATAATCATGTAATGTACTTCATTGCATGAAGCTATTGTTGAATCACAGAGTTAAGTTAATTATAATTTTGTTAGATAGTTGTTAGTTGGTTATGCTAGCAATCTGCTAACTACCATTGTATGTCAACATATGTAAGCTTATTGTTCTTGTATTCTTTTAACATTATTGAGTTGAACCAGTTTCTGAGTCCTCAACCACATTCTATGGTTCTCTTCATTTTCTTCACAGGGCCTGTTTGGGTTGGTTTATTTGAGTTTATCTATTAGCATCAACACATAAGCTTATTGTTGTCGTATTCTTTTAACGTTATTGAGTTGAATCAGTTTCTGAGTCCTCAACCACATTCTATGGTTCTCTTCATTTTCTTCACAGGGCCTGTTTGGGTTGGTTTATTTGAGTTTATCTATTAGCATTAACACACATGAGACTGTTTCAGAGAGCTTATGGAAACAACTTATGATAGGGCTATAATTTGTTTTCAGCTTATTTCCATAAGCTATCCAATATAATTTATGAAAAACAACTTATAGCTTATATGTAAACATTTTGATATTATCTTTTGTTAATGAAAGATTAACAACTTATACATAAGCACGTATATGATGAGAGTTTACTGGGTTTAATTAAGTTCTTTATCCAAAGAGGACCATAGTTTGGGTCTTCCACATTGATATGTTGTTTTAGGCATAAAAAAGTGCCTACTTAGATGATGTTGTCTTCTTCGGTTTTGGTGCTCTTAAGTTGTTGAAGTTTCTTTTTCACTTAGTAAGGTCTGCAGAAGGTTGCTTTTACTAAAGCTGCTCAATTTTCTTTTGTGGGCAGGTACTCGATCACAGTGGCATTTTGCATTGCAATTGTGATGACTTTCTTTAGTGCGTTTGATATTCCAGTCTTCTGGCCTATACTCCTCTTCTACTGGGTGGTCTTGTTCTCGCTTACTATGAGGAGGCAGATATCACATATGATCAAATACAGATATGTACCGTTCAATTTCGGAAAACAGGTAATTTAGATTCAAAATTGTTGTTGTGATTGTTGTGTGGCTATTGATTCAATGATTGTGTTGATTGTTGTTATAAGGATTACATCTTTTTTGCTATTACTAAGCTTTTTTTTTGTCTATTTTACTTTTAGCACTATCAGAGAAAGAGAGCATCAGAAGAAGAAAGCACAAGTCTTCCTGTGGACTGA

Protein sequence

>MS.gene57160.t1

MDRVFGRRFHLHPPRLLLRRLLRRYVDPAVADAADGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFCIAIVMTFFSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQHYQRKRASEEESTSLPVD