Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57160.t1 | XP_003611671.1 | 93.4 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 7.70E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57160.t1 | O48670 | 67.9 | 112 | 36 | 0 | 17 | 128 | 75 | 186 | 5.6e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57160.t1 | G7K592 | 93.4 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 5.5e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene57160 | -0.811731 | 6.05E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene57160 | -0.810794 | 9.66E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene57160 | -0.834326 | 3.20E-56 | -1.69E-46 |
| MS.gene04933 | MS.gene57160 | -0.814922 | 1.20E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene57160 | -0.860143 | 2.54E-63 | -1.69E-46 |
| MS.gene049382 | MS.gene57160 | -0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene57160 | -0.834724 | 2.54E-56 | -1.69E-46 |
| MS.gene049501 | MS.gene57160 | -0.837402 | 5.31E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene57160 | -0.813334 | 2.70E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene57160 | -0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene049877 | MS.gene57160 | -0.814009 | 1.92E-51 | -1.69E-46 |
| MS.gene049919 | MS.gene57160 | -0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene57160 | -0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene57160 | -0.865229 | 6.87E-65 | -1.69E-46 |
| MS.gene050227 | MS.gene57160 | -0.88177 | 1.82E-70 | -1.69E-46 |
| MS.gene050228 | MS.gene57160 | -0.876447 | 1.39E-68 | -1.69E-46 |
| MS.gene050319 | MS.gene57160 | 0.812744 | 3.63E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene57160 | 0.845462 | 4.00E-59 | -1.69E-46 |
| MS.gene050442 | MS.gene57160 | -0.861433 | 1.03E-63 | -1.69E-46 |
| MS.gene050586 | MS.gene57160 | -0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene57160 | 0.884901 | 1.29E-71 | -1.69E-46 |
| MS.gene050629 | MS.gene57160 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene57160 | -0.818918 | 1.53E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene57160 | -0.826595 | 2.49E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene57160 | -0.824711 | 6.96E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene57160 | -0.818391 | 2.01E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene57160 | -0.830735 | 2.48E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene57160 | -0.843233 | 1.59E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene57160 | -0.844803 | 6.03E-59 | -1.69E-46 |
| MS.gene050787 | MS.gene57160 | -0.874262 | 7.75E-68 | -1.69E-46 |
| MS.gene050807 | MS.gene57160 | -0.818662 | 1.74E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene57160 | -0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene57160 | -0.821884 | 3.18E-53 | -1.69E-46 |
| MS.gene050824 | MS.gene57160 | -0.824378 | 8.34E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene57160 | -0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene051180 | MS.gene57160 | -0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene57160 | 0.820498 | 6.64E-53 | -1.69E-46 |
| MS.gene051210 | MS.gene57160 | -0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene57160 | -0.831198 | 1.91E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene57160 | -0.856732 | 2.64E-62 | -1.69E-46 |
| MS.gene051983 | MS.gene57160 | -0.814649 | 1.38E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene57160 | -0.818397 | 2.00E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene57160 | -0.800614 | 1.33E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene57160 | -0.805331 | 1.41E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene57160 | -0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene57160 | -0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene57160 | 0.818433 | 1.97E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene57160 | -0.829032 | 6.46E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene57160 | 0.826138 | 3.20E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene57160 | -0.818889 | 1.55E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene57160 | -0.824781 | 6.70E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene57160 | -0.81202 | 5.23E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene57160 | -0.82479 | 6.67E-54 | -1.69E-46 |
| MS.gene052673 | MS.gene57160 | 0.834048 | 3.75E-56 | -1.69E-46 |
| MS.gene052778 | MS.gene57160 | -0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene57160 | -0.824489 | 7.85E-54 | -1.69E-46 |
| MS.gene052860 | MS.gene57160 | -0.835658 | 1.48E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene57160 | -0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene57160 | -0.835497 | 1.62E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene57160 | -0.830327 | 3.13E-55 | -1.69E-46 |
| MS.gene053054 | MS.gene57160 | 0.83233 | 1.01E-55 | -1.69E-46 |
| MS.gene053074 | MS.gene57160 | -0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene053085 | MS.gene57160 | -0.81448 | 1.51E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene57160 | -0.816663 | 4.92E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene57160 | -0.833289 | 5.81E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene57160 | -0.845677 | 3.50E-59 | -1.69E-46 |
| MS.gene05415 | MS.gene57160 | -0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene57160 | -0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene57160 | 0.850229 | 1.94E-60 | -1.69E-46 |
| MS.gene054379 | MS.gene57160 | -0.855152 | 7.64E-62 | -1.69E-46 |
| MS.gene054405 | MS.gene57160 | -0.806473 | 8.09E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene57160 | -0.831495 | 1.62E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene57160 | -0.852318 | 4.99E-61 | -1.69E-46 |
| MS.gene054472 | MS.gene57160 | -0.836964 | 6.87E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene57160 | -0.839786 | 1.29E-57 | -1.69E-46 |
| MS.gene054559 | MS.gene57160 | -0.80433 | 2.27E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene57160 | -0.822096 | 2.84E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene57160 | -0.83237 | 9.83E-56 | -1.69E-46 |
| MS.gene054942 | MS.gene57160 | -0.83813 | 3.45E-57 | -1.69E-46 |
| MS.gene055356 | MS.gene57160 | -0.831755 | 1.39E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene57160 | -0.842189 | 3.01E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene57160 | -0.809927 | 1.49E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene57160 | -0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene57160 | -0.824565 | 7.53E-54 | -1.69E-46 |
| MS.gene055816 | MS.gene57160 | 0.823918 | 1.07E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene57160 | -0.831807 | 1.35E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene57160 | -0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene57160 | -0.823937 | 1.06E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene57160 | 0.867268 | 1.55E-65 | -1.69E-46 |
| MS.gene056173 | MS.gene57160 | -0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene57160 | -0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene57160 | -0.828646 | 8.01E-55 | -1.69E-46 |
| MS.gene056552 | MS.gene57160 | -0.818068 | 2.38E-52 | -1.69E-46 |
| MS.gene056589 | MS.gene57160 | -0.805274 | 1.44E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene57160 | -0.827052 | 1.94E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene57160 | -0.809223 | 2.10E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene57160 | -0.826648 | 2.42E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene57160 | -0.806302 | 8.79E-50 | -1.69E-46 |
| MS.gene057200 | MS.gene57160 | -0.810807 | 9.59E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene57160 | -0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene57160 | -0.827244 | 1.74E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene57160 | -0.823239 | 1.54E-53 | -1.69E-46 |
| MS.gene057929 | MS.gene57160 | -0.801572 | 8.45E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene57160 | -0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene57160 | -0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene058084 | MS.gene57160 | -0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene058139 | MS.gene57160 | -0.824658 | 7.16E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene57160 | -0.837511 | 4.98E-57 | -1.69E-46 |
| MS.gene058399 | MS.gene57160 | -0.83068 | 2.56E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene57160 | -0.817823 | 2.70E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene57160 | -0.821694 | 3.52E-53 | -1.69E-46 |
| MS.gene059249 | MS.gene57160 | -0.804692 | 1.91E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene57160 | -0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene57160 | -0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene57160 | -0.8267 | 2.35E-54 | -1.69E-46 |
| MS.gene059789 | MS.gene57160 | -0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene57160 | -0.829418 | 5.21E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene57160 | 0.886564 | 3.06E-72 | -1.69E-46 |
| MS.gene060322 | MS.gene57160 | -0.836519 | 8.93E-57 | -1.69E-46 |
| MS.gene060404 | MS.gene57160 | -0.820573 | 6.39E-53 | -1.69E-46 |
| MS.gene060480 | MS.gene57160 | -0.832677 | 8.25E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene57160 | -0.818801 | 1.62E-52 | -1.69E-46 |
| MS.gene060553 | MS.gene57160 | -0.811858 | 5.67E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene57160 | -0.83852 | 2.74E-57 | -1.69E-46 |
| MS.gene060634 | MS.gene57160 | 0.845976 | 2.90E-59 | -1.69E-46 |
| MS.gene060683 | MS.gene57160 | -0.852087 | 5.81E-61 | -1.69E-46 |
| MS.gene060685 | MS.gene57160 | -0.852601 | 4.15E-61 | -1.69E-46 |
| MS.gene060690 | MS.gene57160 | -0.802674 | 5.01E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene57160 | -0.85734 | 1.74E-62 | -1.69E-46 |
| MS.gene060803 | MS.gene57160 | -0.861252 | 1.17E-63 | -1.69E-46 |
| MS.gene060998 | MS.gene57160 | -0.816045 | 6.77E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene57160 | 0.8489 | 4.56E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene57160 | 0.820423 | 6.91E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57160.t1 | MTR_5g016560 | 93.443 | 122 | 8 | 0 | 17 | 138 | 87 | 208 | 4.45e-79 | 232 |
| MS.gene57160.t1 | MTR_5g016560 | 92.308 | 104 | 8 | 0 | 17 | 120 | 87 | 190 | 9.48e-65 | 196 |
| MS.gene57160.t1 | MTR_4g094930 | 78.151 | 119 | 25 | 1 | 17 | 135 | 72 | 189 | 3.56e-62 | 189 |
| MS.gene57160.t1 | MTR_4g070400 | 68.868 | 106 | 33 | 0 | 17 | 122 | 76 | 181 | 1.97e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57160.t1 | AT4G39220 | 65.517 | 116 | 40 | 0 | 17 | 132 | 75 | 190 | 1.94e-54 | 169 |
| MS.gene57160.t1 | AT4G39220 | 65.517 | 116 | 40 | 0 | 17 | 132 | 75 | 190 | 1.94e-54 | 169 |
| MS.gene57160.t1 | AT2G21600 | 62.295 | 122 | 45 | 1 | 17 | 138 | 75 | 195 | 5.16e-52 | 163 |
| MS.gene57160.t1 | AT2G23310 | 67.925 | 106 | 33 | 1 | 27 | 132 | 107 | 211 | 7.82e-46 | 148 |
| MS.gene57160.t1 | AT2G23310 | 67.925 | 106 | 32 | 2 | 27 | 132 | 107 | 210 | 8.43e-44 | 143 |
| MS.gene57160.t1 | AT2G18240 | 62.136 | 103 | 38 | 1 | 17 | 119 | 79 | 180 | 1.28e-37 | 127 |
| MS.gene57160.t1 | AT2G18240 | 62.136 | 103 | 38 | 1 | 17 | 119 | 79 | 180 | 1.31e-37 | 127 |
Find 35 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTATACTCCTCTTCTAC+TGG | 0.286487 | 5.2:+8283429 | MS.gene57160:CDS |
| CGTTTGATATTCCAGTCTTC+TGG | 0.311008 | 5.2:+8283408 | MS.gene57160:CDS |
| AGATATGTACCGTTCAATTT+CGG | 0.357992 | 5.2:+8283506 | MS.gene57160:CDS |
| ACCGTTCAATTTCGGAAAAC+AGG | 0.388365 | 5.2:+8283514 | MS.gene57160:CDS |
| CTCCGCGTCTACTTCTTAGA+AGG | 0.426734 | 5.2:+8281962 | MS.gene57160:CDS |
| AACTCATCGGAAGCTCTAAT+AGG | 0.427663 | 5.2:-8282097 | None:intergenic |
| GCCTCCCTGAGTTCAAGTTC+TGG | 0.451201 | 5.2:+8282137 | MS.gene57160:CDS |
| TCAGCGGCGTCGGCGACGGC+GGG | 0.451738 | 5.2:-8282061 | None:intergenic |
| AGGAGTATAGGCCAGAAGAC+TGG | 0.477362 | 5.2:-8283419 | None:intergenic |
| GTCAGCGGCGTCGGCGACGG+CGG | 0.477787 | 5.2:-8282062 | None:intergenic |
| ACCGTCAGCGGCGTCGGCGA+CGG | 0.481145 | 5.2:-8282065 | None:intergenic |
| GCCGTCGCCGACGCCGCTGA+CGG | 0.482016 | 5.2:+8282064 | MS.gene57160:CDS |
| GCCTATACTCCTCTTCTACT+GGG | 0.482573 | 5.2:+8283430 | MS.gene57160:CDS |
| AACTGAAAATTTCAGTCCAC+AGG | 0.507776 | 5.2:-8283712 | None:intergenic |
| ACCCAGTAGAAGAGGAGTAT+AGG | 0.512859 | 5.2:-8283431 | None:intergenic |
| AGTAGGACCGTCAGCGGCGT+CGG | 0.515054 | 5.2:-8282071 | None:intergenic |
| TATTACCAGAACTTGAACTC+AGG | 0.516687 | 5.2:-8282142 | None:intergenic |
| TCAGGGAGGCGGCGAACGAA+AGG | 0.517684 | 5.2:-8282124 | None:intergenic |
| ACAAGACCACCCAGTAGAAG+AGG | 0.526419 | 5.2:-8283439 | None:intergenic |
| TACGTGCTACCGCGATGGAT+AGG | 0.536752 | 5.2:+8281911 | None:intergenic |
| TCTTGTTCTCGCTTACTATG+AGG | 0.536784 | 5.2:+8283456 | MS.gene57160:CDS |
| ACGTGCTACCGCGATGGATA+GGG | 0.540998 | 5.2:+8281912 | None:intergenic |
| GGAGGCGGCGAACGAAAGGA+CGG | 0.592422 | 5.2:-8282120 | None:intergenic |
| TGTTCTCGCTTACTATGAGG+AGG | 0.593117 | 5.2:+8283459 | MS.gene57160:CDS |
| ATTACCAGAACTTGAACTCA+GGG | 0.599316 | 5.2:-8282141 | None:intergenic |
| GAAGCTCTAATAGGAAGAGT+AGG | 0.606900 | 5.2:-8282088 | None:intergenic |
| AGGAAGAGTAGGACCGTCAG+CGG | 0.634957 | 5.2:-8282077 | None:intergenic |
| AGAAAGCACAAGTCTTCCTG+TGG | 0.635231 | 5.2:+8283696 | MS.gene57160:CDS |
| AGAACTTGAACTCAGGGAGG+CGG | 0.636334 | 5.2:-8282135 | None:intergenic |
| AACGAAAGGACGGAACTCAT+CGG | 0.637257 | 5.2:-8282110 | None:intergenic |
| TATACTCCTCTTCTACTGGG+TGG | 0.667420 | 5.2:+8283433 | MS.gene57160:CDS |
| AGCCTTCTAAGAAGTAGACG+CGG | 0.688638 | 5.2:-8281964 | None:intergenic |
| CTTCTAAGAAGTAGACGCGG+AGG | 0.701782 | 5.2:-8281961 | None:intergenic |
| ACCAGAACTTGAACTCAGGG+AGG | 0.720457 | 5.2:-8282138 | None:intergenic |
| GGGCAGGTACTCGATCACAG+TGG | 0.793101 | 5.2:+8283349 | MS.gene57160:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTCATAAATTATAT+TGG | - | chr5.2:8283036-8283055 | None:intergenic | 10.0% |
| !! | AAATTATATTGGATAGCTTA+TGG | - | chr5.2:8283025-8283044 | None:intergenic | 20.0% |
| !! | TGCATAATTATTGTTAAATG+TGG | + | chr5.2:8282349-8282368 | MS.gene57160:intron | 20.0% |
| !!! | ATCGTTTAATTGATTGATTT+TGG | + | chr5.2:8282185-8282204 | MS.gene57160:intron | 20.0% |
| !!! | TAATTGATTGATTTTGGTAT+AGG | + | chr5.2:8282191-8282210 | MS.gene57160:intron | 20.0% |
| !!! | TTCTCATCAAAATTTCTTTT+TGG | - | chr5.2:8282460-8282479 | None:intergenic | 20.0% |
| ! | AATTATGCACAATATCATCA+AGG | - | chr5.2:8282338-8282357 | None:intergenic | 25.0% |
| ! | ATTAAGTTCTTTATCCAAAG+AGG | + | chr5.2:8283155-8283174 | MS.gene57160:intron | 25.0% |
| ! | TATGGAAACAACTTATGATA+GGG | + | chr5.2:8282975-8282994 | MS.gene57160:intron | 25.0% |
| ! | TTACATATGTTGACATACAA+TGG | - | chr5.2:8282648-8282667 | None:intergenic | 25.0% |
| ! | TTATGGAAACAACTTATGAT+AGG | + | chr5.2:8282974-8282993 | MS.gene57160:intron | 25.0% |
| ! | TTTGTTAGATAGTTGTTAGT+TGG | + | chr5.2:8282599-8282618 | MS.gene57160:intron | 25.0% |
| !!! | AGTTTCTTTTTCACTTAGTA+AGG | + | chr5.2:8283281-8283300 | MS.gene57160:intron | 25.0% |
| !!! | TTGTGTTGATTGTTGTTATA+AGG | + | chr5.2:8283591-8283610 | MS.gene57160:intron | 25.0% |
| AGATATGTACCGTTCAATTT+CGG | + | chr5.2:8283506-8283525 | MS.gene57160:CDS | 30.0% | |
| CCTAAAACAACATATCAATG+TGG | - | chr5.2:8283198-8283217 | None:intergenic | 30.0% | |
| GTATATGATGAGAGTTTACT+GGG | + | chr5.2:8283128-8283147 | MS.gene57160:intron | 30.0% | |
| TTAGATGATGTTGTCTTCTT+CGG | + | chr5.2:8283235-8283254 | MS.gene57160:intron | 30.0% | |
| ! | TTCTCTTCATTTTCTTCACA+GGG | + | chr5.2:8282740-8282759 | MS.gene57160:intron | 30.0% |
| !!! | CCACATTGATATGTTGTTTT+AGG | + | chr5.2:8283195-8283214 | MS.gene57160:intron | 30.0% |
| ACGAAGTGTGTATAAACTGA+CGG | - | chr5.2:8282281-8282300 | None:intergenic | 35.0% | |
| ATGAAGAGAACCATAGAATG+TGG | - | chr5.2:8282730-8282749 | None:intergenic | 35.0% | |
| ATTACCAGAACTTGAACTCA+GGG | - | chr5.2:8282144-8282163 | None:intergenic | 35.0% | |
| CGTATATGATGAGAGTTTAC+TGG | + | chr5.2:8283127-8283146 | MS.gene57160:intron | 35.0% | |
| GAAGACAACATCATCTAAGT+AGG | - | chr5.2:8283233-8283252 | None:intergenic | 35.0% | |
| TACATCCTCAATCTTCTCAT+CGG | + | chr5.2:8282016-8282035 | MS.gene57160:intron | 35.0% | |
| TATTACCAGAACTTGAACTC+AGG | - | chr5.2:8282145-8282164 | None:intergenic | 35.0% | |
| TCAAATAAACCAACCCAAAC+AGG | - | chr5.2:8282766-8282785 | None:intergenic | 35.0% | |
| TGACGGTAATGAATGATTGA+CGG | - | chr5.2:8282264-8282283 | None:intergenic | 35.0% | |
| ! | ACCTGTTTTCCGAAATTGAA+CGG | - | chr5.2:8283518-8283537 | None:intergenic | 35.0% |
| ! | AGCTGCTCAATTTTCTTTTG+TGG | + | chr5.2:8283328-8283347 | MS.gene57160:intron | 35.0% |
| ! | CAATCTAGCTTGCAATATCA+AGG | - | chr5.2:8282393-8282412 | None:intergenic | 35.0% |
| ! | GCTGCTCAATTTTCTTTTGT+GGG | + | chr5.2:8283329-8283348 | MS.gene57160:intron | 35.0% |
| ! | GTTCTCTTCATTTTCTTCAC+AGG | + | chr5.2:8282739-8282758 | MS.gene57160:intron | 35.0% |
| ! | TTGTTGTTGTGATTGTTGTG+TGG | + | chr5.2:8283553-8283572 | MS.gene57160:intron | 35.0% |
| AATGTGGAAGACCCAAACTA+TGG | - | chr5.2:8283182-8283201 | None:intergenic | 40.0% | |
| ACCGTTCAATTTCGGAAAAC+AGG | + | chr5.2:8283514-8283533 | MS.gene57160:CDS | 40.0% | |
| ACTTCGTTCTCGTGTGATTA+AGG | + | chr5.2:8282294-8282313 | MS.gene57160:intron | 40.0% | |
| AGAACCATAGAATGTGGTTG+AGG | - | chr5.2:8282724-8282743 | None:intergenic | 40.0% | |
| AGACTGTTTCAGAGAGCTTA+TGG | + | chr5.2:8282957-8282976 | MS.gene57160:intron | 40.0% | |
| ATCCAAAGAGGACCATAGTT+TGG | + | chr5.2:8283167-8283186 | MS.gene57160:intron | 40.0% | |
| CGTTTGATATTCCAGTCTTC+TGG | + | chr5.2:8283408-8283427 | MS.gene57160:CDS | 40.0% | |
| TCCAAAGAGGACCATAGTTT+GGG | + | chr5.2:8283168-8283187 | MS.gene57160:intron | 40.0% | |
| TCTTGTTCTCGCTTACTATG+AGG | + | chr5.2:8283456-8283475 | MS.gene57160:CDS | 40.0% | |
| ! | AACTCATCGGAAGCTCTAAT+AGG | - | chr5.2:8282100-8282119 | None:intergenic | 40.0% |
| ! | CTCAATTTTCTTTTGTGGGC+AGG | + | chr5.2:8283333-8283352 | MS.gene57160:intron | 40.0% |
| ! | GAAGCTCTAATAGGAAGAGT+AGG | - | chr5.2:8282091-8282110 | None:intergenic | 40.0% |
| ! | GATGTTGTCTTCTTCGGTTT+TGG | + | chr5.2:8283241-8283260 | MS.gene57160:intron | 40.0% |
| AACGAAAGGACGGAACTCAT+CGG | - | chr5.2:8282113-8282132 | None:intergenic | 45.0% | |
| ACCCAAACTATGGTCCTCTT+TGG | - | chr5.2:8283172-8283191 | None:intergenic | 45.0% | |
| CACTTAGTAAGGTCTGCAGA+AGG | + | chr5.2:8283292-8283311 | MS.gene57160:intron | 45.0% | |
| GAGTCCTCAACCACATTCTA+TGG | + | chr5.2:8282717-8282736 | MS.gene57160:intron | 45.0% | |
| GCCTATACTCCTCTTCTACT+GGG | + | chr5.2:8283430-8283449 | MS.gene57160:CDS | 45.0% | |
| GGAAACCGATGAGAAGATTG+AGG | - | chr5.2:8282024-8282043 | None:intergenic | 45.0% | |
| TATACTCCTCTTCTACTGGG+TGG | + | chr5.2:8283433-8283452 | MS.gene57160:CDS | 45.0% | |
| TGCAAGCTAGATTGTGCATG+CGG | + | chr5.2:8282399-8282418 | MS.gene57160:intron | 45.0% | |
| TGTTCTCGCTTACTATGAGG+AGG | + | chr5.2:8283459-8283478 | MS.gene57160:CDS | 45.0% | |
| TTTCTTCACAGGGCCTGTTT+GGG | + | chr5.2:8282750-8282769 | MS.gene57160:intron | 45.0% | |
| ! | ACCCAGTAGAAGAGGAGTAT+AGG | - | chr5.2:8283434-8283453 | None:intergenic | 45.0% |
| ! | AGAAAGCACAAGTCTTCCTG+TGG | + | chr5.2:8283696-8283715 | MS.gene57160:CDS | 45.0% |
| ! | AGCCTTCTAAGAAGTAGACG+CGG | - | chr5.2:8281967-8281986 | None:intergenic | 45.0% |
| ! | TTTTCTTCACAGGGCCTGTT+TGG | + | chr5.2:8282749-8282768 | MS.gene57160:intron | 45.0% |
| ACAAGACCACCCAGTAGAAG+AGG | - | chr5.2:8283442-8283461 | None:intergenic | 50.0% | |
| ACCAGAACTTGAACTCAGGG+AGG | - | chr5.2:8282141-8282160 | None:intergenic | 50.0% | |
| AGAACTTGAACTCAGGGAGG+CGG | - | chr5.2:8282138-8282157 | None:intergenic | 50.0% | |
| CTCCGCGTCTACTTCTTAGA+AGG | + | chr5.2:8281962-8281981 | MS.gene57160:CDS | 50.0% | |
| GGCCTATACTCCTCTTCTAC+TGG | + | chr5.2:8283429-8283448 | MS.gene57160:CDS | 50.0% | |
| GGCTTCTACGTCGTTACGTA+CGG | + | chr5.2:8281983-8282002 | MS.gene57160:intron | 50.0% | |
| GTGGTTGAGGACTCAGAAAC+TGG | - | chr5.2:8282711-8282730 | None:intergenic | 50.0% | |
| TACGTCGTTACGTACGGTCT+TGG | + | chr5.2:8281989-8282008 | MS.gene57160:intron | 50.0% | |
| ! | AGGAGTATAGGCCAGAAGAC+TGG | - | chr5.2:8283422-8283441 | None:intergenic | 50.0% |
| ! | CTTCTAAGAAGTAGACGCGG+AGG | - | chr5.2:8281964-8281983 | None:intergenic | 50.0% |
| AGGAAGAGTAGGACCGTCAG+CGG | - | chr5.2:8282080-8282099 | None:intergenic | 55.0% | |
| TTCACAGGGCCTGTTTGGGT+TGG | + | chr5.2:8282754-8282773 | MS.gene57160:intron | 55.0% | |
| ! | GCCTCCCTGAGTTCAAGTTC+TGG | + | chr5.2:8282137-8282156 | MS.gene57160:CDS | 55.0% |
| GGGCAGGTACTCGATCACAG+TGG | + | chr5.2:8283349-8283368 | MS.gene57160:intron | 60.0% | |
| !! | CATCGGTTTCCTCTCCCCTC+AGG | + | chr5.2:8282033-8282052 | MS.gene57160:intron | 60.0% |
| AGTAGGACCGTCAGCGGCGT+CGG | - | chr5.2:8282074-8282093 | None:intergenic | 65.0% | |
| CGACGGCGGGATCAACCTGA+GGG | - | chr5.2:8282051-8282070 | None:intergenic | 65.0% | |
| CGGGATCAACCTGAGGGGAG+AGG | - | chr5.2:8282045-8282064 | None:intergenic | 65.0% | |
| GACGGCGGGATCAACCTGAG+GGG | - | chr5.2:8282050-8282069 | None:intergenic | 65.0% | |
| GGAGGCGGCGAACGAAAGGA+CGG | - | chr5.2:8282123-8282142 | None:intergenic | 65.0% | |
| TCAGGGAGGCGGCGAACGAA+AGG | - | chr5.2:8282127-8282146 | None:intergenic | 65.0% | |
| GCGACGGCGGGATCAACCTG+AGG | - | chr5.2:8282052-8282071 | None:intergenic | 70.0% | |
| !! | ACCGTCAGCGGCGTCGGCGA+CGG | - | chr5.2:8282068-8282087 | None:intergenic | 75.0% |
| ! | GCCGTCGCCGACGCCGCTGA+CGG | + | chr5.2:8282064-8282083 | MS.gene57160:CDS | 80.0% |
| !!! | GTCAGCGGCGTCGGCGACGG+CGG | - | chr5.2:8282065-8282084 | None:intergenic | 80.0% |
| !!! | TCAGCGGCGTCGGCGACGGC+GGG | - | chr5.2:8282064-8282083 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 8281925 | 8283723 | 8281925 | ID=MS.gene57160 |
| chr5.2 | mRNA | 8281925 | 8283723 | 8281925 | ID=MS.gene57160.t1;Parent=MS.gene57160 |
| chr5.2 | exon | 8281925 | 8281999 | 8281925 | ID=MS.gene57160.t1.exon1;Parent=MS.gene57160.t1 |
| chr5.2 | CDS | 8281925 | 8281999 | 8281925 | ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1 |
| chr5.2 | exon | 8282055 | 8282158 | 8282055 | ID=MS.gene57160.t1.exon2;Parent=MS.gene57160.t1 |
| chr5.2 | CDS | 8282055 | 8282158 | 8282055 | ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1 |
| chr5.2 | exon | 8283355 | 8283535 | 8283355 | ID=MS.gene57160.t1.exon3;Parent=MS.gene57160.t1 |
| chr5.2 | CDS | 8283355 | 8283535 | 8283355 | ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1 |
| chr5.2 | exon | 8283667 | 8283723 | 8283667 | ID=MS.gene57160.t1.exon4;Parent=MS.gene57160.t1 |
| chr5.2 | CDS | 8283667 | 8283723 | 8283667 | ID=cds.MS.gene57160.t1;Parent=MS.gene57160.t1 |
| Gene Sequence |
| Protein sequence |
