Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28204.t1 | AES69158.1 | 91.2 | 113 | 10 | 0 | 19 | 131 | 17 | 129 | 1.20E-53 | 219.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28204.t1 | G7J1P4 | 91.2 | 113 | 10 | 0 | 19 | 131 | 17 | 129 | 8.5e-54 | 219.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene28204 | 0.815498 | 8.96E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene28204 | 0.80424 | 2.38E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene28204 | 0.825554 | 4.40E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene28204 | 0.812287 | 4.57E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene28204 | 0.830441 | 2.93E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene28204 | 0.807261 | 5.51E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene28204 | 0.826841 | 2.17E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene28204 | 0.825579 | 4.34E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene28204 | 0.819144 | 1.35E-52 | -1.69E-46 |
| MS.gene050824 | MS.gene28204 | 0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene28204 | 0.808697 | 2.73E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene28204 | 0.822112 | 2.82E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene28204 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene052586 | MS.gene28204 | 0.808261 | 3.38E-50 | -1.69E-46 |
| MS.gene052778 | MS.gene28204 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene28204 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene28204 | -0.814664 | 1.37E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene28204 | 0.816635 | 5.00E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene28204 | -0.808552 | 2.93E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene28204 | 0.804073 | 2.57E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene28204 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene28204 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene28204 | 0.807219 | 5.62E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene28204 | 0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene057027 | MS.gene28204 | 0.801746 | 7.79E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene28204 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene057414 | MS.gene28204 | 0.836607 | 8.47E-57 | -1.69E-46 |
| MS.gene057967 | MS.gene28204 | 0.814382 | 1.59E-51 | -1.69E-46 |
| MS.gene057971 | MS.gene28204 | 0.823799 | 1.14E-53 | -1.69E-46 |
| MS.gene057980 | MS.gene28204 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene28204 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene28204 | 0.821416 | 4.08E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene28204 | 0.836962 | 6.88E-57 | -1.69E-46 |
| MS.gene060634 | MS.gene28204 | -0.804157 | 2.47E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene28204 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene28204 | -0.832489 | 9.18E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28204.t1 | MTR_3g023230 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 4.52e-73 | 218 |
| MS.gene28204.t1 | MTR_1g031730 | 71.304 | 115 | 28 | 3 | 17 | 130 | 17 | 127 | 6.02e-50 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTCCTTCAAGAAATA+AGG | 0.229085 | 3.3:+17179283 | None:intergenic |
| CATATGAAATCACCATATTC+TGG | 0.262324 | 3.3:+17178350 | None:intergenic |
| CGGGGACGGGGACGGGGAAG+AGG | 0.279136 | 3.3:-17180546 | MS.gene28204:CDS |
| CGTCAATGGAACCCAGAATA+TGG | 0.322177 | 3.3:-17178362 | MS.gene28204:CDS |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3.3:-17178619 | MS.gene28204:intron |
| AGGAGGATGGGGACGGGGAC+GGG | 0.334708 | 3.3:-17180559 | MS.gene28204:CDS |
| ATGGGGACGGGGACGGGGAC+GGG | 0.342594 | 3.3:-17180553 | MS.gene28204:CDS |
| GGAGGATGGGGACGGGGACG+GGG | 0.342875 | 3.3:-17180558 | MS.gene28204:CDS |
| TGGGGACGGGGACGGGGACG+GGG | 0.356426 | 3.3:-17180552 | MS.gene28204:CDS |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3.3:-17179339 | MS.gene28204:CDS |
| GGCAGAGGAGGATGGGGACG+GGG | 0.384213 | 3.3:-17180564 | MS.gene28204:CDS |
| TGGCAGAGGAGGATGGGGAC+GGG | 0.402946 | 3.3:-17180565 | MS.gene28204:CDS |
| GAGGAGGATGGGGACGGGGA+CGG | 0.418582 | 3.3:-17180560 | MS.gene28204:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3.3:-17179338 | MS.gene28204:CDS |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3.3:-17178626 | MS.gene28204:CDS |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 3.3:-17178659 | MS.gene28204:CDS |
| GAAGGAGAAGGAAGAATTGA+AGG | 0.454002 | 3.3:-17179272 | MS.gene28204:CDS |
| AATGGCTGGCAGAGGAGGAT+GGG | 0.472479 | 3.3:-17180571 | MS.gene28204:CDS |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3.3:-17179290 | MS.gene28204:CDS |
| CTGGCAGAGGAGGATGGGGA+CGG | 0.475505 | 3.3:-17180566 | MS.gene28204:CDS |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3.3:-17178723 | MS.gene28204:intron |
| ATATGAAATCACCATATTCT+GGG | 0.482590 | 3.3:+17178351 | None:intergenic |
| AAATGGCTGGCAGAGGAGGA+TGG | 0.482599 | 3.3:-17180572 | MS.gene28204:CDS |
| GATGGGGACGGGGACGGGGA+CGG | 0.486855 | 3.3:-17180554 | MS.gene28204:CDS |
| TTGTAGACTTCGTAAATGGC+TGG | 0.505498 | 3.3:-17180585 | None:intergenic |
| AAACTAAGCAGATGCTGAGC+CGG | 0.515920 | 3.3:-17178391 | MS.gene28204:CDS |
| ATGGCTGGCAGAGGAGGATG+GGG | 0.521277 | 3.3:-17180570 | MS.gene28204:CDS |
| TCCTTATTTCTTGAAGGAGA+AGG | 0.526141 | 3.3:-17179284 | MS.gene28204:CDS |
| TCGTAAATGGCTGGCAGAGG+AGG | 0.549677 | 3.3:-17180576 | None:intergenic |
| ACTTCGTAAATGGCTGGCAG+AGG | 0.569519 | 3.3:-17180579 | None:intergenic |
| AAGGAGAAGGAAGAATTGAA+GGG | 0.585858 | 3.3:-17179271 | MS.gene28204:intron |
| AAATTACAAATGGAAGTGGT+CGG | 0.588602 | 3.3:+17180514 | None:intergenic |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3.3:-17179337 | MS.gene28204:CDS |
| GATTTACCTGATGTTAAACA+CGG | 0.617922 | 3.3:-17179376 | MS.gene28204:CDS |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3.3:+17178643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTTTAATAAATAATGA+AGG | - | chr3.3:17178774-17178793 | MS.gene28204:intron | 10.0% |
| !! | AAATGAAAACTAAAAAAACA+AGG | + | chr3.3:17178643-17178662 | None:intergenic | 15.0% |
| !! | CTTTAAACAATAATATATCA+TGG | + | chr3.3:17180015-17180034 | None:intergenic | 15.0% |
| !!! | AAATGGTTAAGTTTTTTAAA+AGG | - | chr3.3:17180350-17180369 | MS.gene28204:intron | 15.0% |
| !!! | AATGGTTAAGTTTTTTAAAA+GGG | - | chr3.3:17180351-17180370 | MS.gene28204:intron | 15.0% |
| !!! | AATTAAGTTGTTTATTGAAA+CGG | + | chr3.3:17178455-17178474 | None:intergenic | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | - | chr3.3:17180493-17180512 | MS.gene28204:intron | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | - | chr3.3:17179611-17179630 | MS.gene28204:intron | 15.0% |
| !! | ACAGAAAATAGATAATTACA+CGG | + | chr3.3:17179484-17179503 | None:intergenic | 20.0% |
| !! | GAAATATAGAAATAGTTATG+AGG | + | chr3.3:17179388-17179407 | None:intergenic | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | + | chr3.3:17179688-17179707 | None:intergenic | 20.0% |
| !! | TTGATTTATTTATGCTTATC+TGG | + | chr3.3:17179274-17179293 | None:intergenic | 20.0% |
| !!! | ATTGTTTAAAGTATCTAACA+TGG | - | chr3.3:17180024-17180043 | MS.gene28204:intron | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | - | chr3.3:17180129-17180148 | MS.gene28204:intron | 20.0% |
| ! | AAAAAACATAACCAAATGGT+GGG | + | chr3.3:17180425-17180444 | None:intergenic | 25.0% |
| ! | AAAATGAATTATAGTACGGA+TGG | + | chr3.3:17179319-17179338 | None:intergenic | 25.0% |
| ! | AAATATTTCTCGTATCTATG+TGG | - | chr3.3:17178565-17178584 | MS.gene28204:intron | 25.0% |
| ! | ACATGATATATATTGTGAGA+TGG | - | chr3.3:17179690-17179709 | MS.gene28204:intron | 25.0% |
| ! | ATATGAAATCACCATATTCT+GGG | + | chr3.3:17180571-17180590 | None:intergenic | 25.0% |
| ! | GCAGAAAATGAATTATAGTA+CGG | + | chr3.3:17179323-17179342 | None:intergenic | 25.0% |
| ! | GTTTCTTTCATAAACTATCA+TGG | - | chr3.3:17179057-17179076 | MS.gene28204:intron | 25.0% |
| ! | TTATAGACATGCAATAAGAT+GGG | - | chr3.3:17179107-17179126 | MS.gene28204:intron | 25.0% |
| !! | AAAACAAGGTCTTATAATCT+AGG | + | chr3.3:17178629-17178648 | None:intergenic | 25.0% |
| !! | AATAATGGAATAGGATTTAC+GGG | - | chr3.3:17180327-17180346 | MS.gene28204:intron | 25.0% |
| !! | AGAACTAAATTGGTAATTTC+AGG | - | chr3.3:17180503-17180522 | MS.gene28204:intron | 25.0% |
| !! | ATGTCTTTGGAAGATTATTA+CGG | - | chr3.3:17179949-17179968 | MS.gene28204:intron | 25.0% |
| !! | GAATAATGGAATAGGATTTA+CGG | - | chr3.3:17180326-17180345 | MS.gene28204:intron | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | - | chr3.3:17179764-17179783 | MS.gene28204:intron | 25.0% |
| !! | TACTTTTCTTTATGCATTTG+AGG | - | chr3.3:17180460-17180479 | MS.gene28204:intron | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | + | chr3.3:17179769-17179788 | None:intergenic | 25.0% |
| !!! | GGTCAAATTTTAATCTTTGA+GGG | + | chr3.3:17179832-17179851 | None:intergenic | 25.0% |
| !!! | TGGTCAAATTTTAATCTTTG+AGG | + | chr3.3:17179833-17179852 | None:intergenic | 25.0% |
| AAATTACAAATGGAAGTGGT+CGG | + | chr3.3:17178408-17178427 | None:intergenic | 30.0% | |
| AAGAAGTTAATCCAAGCAAA+CGG | - | chr3.3:17178941-17178960 | MS.gene28204:intron | 30.0% | |
| AATGTGGCTTTCAAATGATT+AGG | + | chr3.3:17179981-17180000 | None:intergenic | 30.0% | |
| ACCTGTGGAAAAATTACAAA+TGG | + | chr3.3:17178418-17178437 | None:intergenic | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | - | chr3.3:17180060-17180079 | MS.gene28204:intron | 30.0% | |
| ATCATTTGAAAGCCACATTT+AGG | - | chr3.3:17179982-17180001 | MS.gene28204:intron | 30.0% | |
| ATGTGGCTTTCAAATGATTA+GGG | + | chr3.3:17179980-17179999 | None:intergenic | 30.0% | |
| CAAAAAACATAACCAAATGG+TGG | + | chr3.3:17180426-17180445 | None:intergenic | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | + | chr3.3:17180157-17180176 | None:intergenic | 30.0% | |
| CATATGAAATCACCATATTC+TGG | + | chr3.3:17180572-17180591 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | - | chr3.3:17180155-17180174 | MS.gene28204:intron | 30.0% | |
| CATGGAATAAATCCTAAATG+TGG | + | chr3.3:17179997-17180016 | None:intergenic | 30.0% | |
| CCACAAAAAACATAACCAAA+TGG | + | chr3.3:17180429-17180448 | None:intergenic | 30.0% | |
| CTTATAGACATGCAATAAGA+TGG | - | chr3.3:17179106-17179125 | MS.gene28204:intron | 30.0% | |
| GAATATTTGTGATAGAGAGA+AGG | - | chr3.3:17178722-17178741 | MS.gene28204:intron | 30.0% | |
| GATTTACCTGATGTTAAACA+CGG | - | chr3.3:17179543-17179562 | MS.gene28204:intron | 30.0% | |
| GGAAAAATTACAAATGGAAG+TGG | + | chr3.3:17178412-17178431 | None:intergenic | 30.0% | |
| GGGTAAACAACTTAATTAAG+TGG | - | chr3.3:17178976-17178995 | MS.gene28204:intron | 30.0% | |
| TATAGACATGCAATAAGATG+GGG | - | chr3.3:17179108-17179127 | MS.gene28204:intron | 30.0% | |
| TCACCAAATTAGAATTAGAG+TGG | - | chr3.3:17179866-17179885 | MS.gene28204:intron | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | + | chr3.3:17179872-17179891 | None:intergenic | 30.0% | |
| TGATAAAGAAAACCGCAATT+TGG | - | chr3.3:17179742-17179761 | MS.gene28204:intron | 30.0% | |
| TGATGTTAAACACGGAAAAA+TGG | - | chr3.3:17179551-17179570 | MS.gene28204:intron | 30.0% | |
| ! | ATTTTTCCGTGTTTAACATC+AGG | + | chr3.3:17179552-17179571 | None:intergenic | 30.0% |
| ! | GATTTTAAATTCTGCTAACG+AGG | - | chr3.3:17178679-17178698 | MS.gene28204:CDS | 30.0% |
| ! | TCCATTTGTAATTTTTCCAC+AGG | - | chr3.3:17178414-17178433 | MS.gene28204:intron | 30.0% |
| ! | TTGGTGATAAATTCTCAACA+TGG | + | chr3.3:17179853-17179872 | None:intergenic | 30.0% |
| !! | ATAACACTTTGAGACTGTTT+GGG | + | chr3.3:17179247-17179266 | None:intergenic | 30.0% |
| !! | ATTTTTAGAGGACCAAATTG+CGG | + | chr3.3:17179757-17179776 | None:intergenic | 30.0% |
| !! | GGACAATTTTAGTGATACTT+TGG | - | chr3.3:17179902-17179921 | MS.gene28204:intron | 30.0% |
| !!! | CCATTTGGTTATGTTTTTTG+TGG | - | chr3.3:17180426-17180445 | MS.gene28204:intron | 30.0% |
| AAGGAGAAGGAAGAATTGAA+GGG | - | chr3.3:17179648-17179667 | MS.gene28204:intron | 35.0% | |
| CAGAGAATCACGAGTAAAAA+TGG | + | chr3.3:17180256-17180275 | None:intergenic | 35.0% | |
| CCTATTCCATTATTCATACC+TGG | + | chr3.3:17180321-17180340 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | - | chr3.3:17179515-17179534 | MS.gene28204:intron | 35.0% | |
| CTTTCCTTGCTTAATTGTCA+GGG | - | chr3.3:17180187-17180206 | MS.gene28204:intron | 35.0% | |
| GTGATACTTTGGTATCTTGA+AGG | - | chr3.3:17179913-17179932 | MS.gene28204:intron | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | - | chr3.3:17179581-17179600 | MS.gene28204:intron | 35.0% | |
| TATTTGTGATAGAGAGAAGG+TGG | - | chr3.3:17178725-17178744 | MS.gene28204:intron | 35.0% | |
| TCCTTCTCCTTCAAGAAATA+AGG | + | chr3.3:17179639-17179658 | None:intergenic | 35.0% | |
| TCTATCACATAGAGCTCTTA+TGG | - | chr3.3:17178834-17178853 | MS.gene28204:intron | 35.0% | |
| TGAATTATAGTACGGATGGA+TGG | + | chr3.3:17179315-17179334 | None:intergenic | 35.0% | |
| TGACAATTAAGCAAGGAAAG+CGG | + | chr3.3:17180187-17180206 | None:intergenic | 35.0% | |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr3.3:17180312-17180331 | MS.gene28204:intron | 35.0% | |
| ! | ACGCTTTCAATCAAAAGTGT+CGG | + | chr3.3:17178491-17178510 | None:intergenic | 35.0% |
| ! | AGTGTGATGACAAGTTTTTG+TGG | + | chr3.3:17179806-17179825 | None:intergenic | 35.0% |
| ! | AGTTTTCGACGAATGTGTTA+AGG | - | chr3.3:17180287-17180306 | MS.gene28204:intron | 35.0% |
| ! | ATTAAGTTGTTTACCCAGAC+AGG | + | chr3.3:17178972-17178991 | None:intergenic | 35.0% |
| ! | CCAGGTATGAATAATGGAAT+AGG | - | chr3.3:17180318-17180337 | MS.gene28204:intron | 35.0% |
| ! | CTTTATGCATTTGAGGTTTC+TGG | - | chr3.3:17180467-17180486 | MS.gene28204:intron | 35.0% |
| ! | GTGTGATGACAAGTTTTTGT+GGG | + | chr3.3:17179805-17179824 | None:intergenic | 35.0% |
| ! | TCCTTATTTCTTGAAGGAGA+AGG | - | chr3.3:17179635-17179654 | MS.gene28204:intron | 35.0% |
| !! | CATAACACTTTGAGACTGTT+TGG | + | chr3.3:17179248-17179267 | None:intergenic | 35.0% |
| !!! | AGTTTTTTAAAAGGGCAACC+CGG | - | chr3.3:17180359-17180378 | MS.gene28204:intron | 35.0% |
| ATGAGACAGTTGCTTGAATG+GGG | - | chr3.3:17179582-17179601 | MS.gene28204:intron | 40.0% | |
| ATGGCTTGACGATACTCATA+AGG | - | chr3.3:17180043-17180062 | MS.gene28204:intron | 40.0% | |
| CAACCATGTCTCTGGTTAAA+TGG | - | chr3.3:17179349-17179368 | MS.gene28204:CDS | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | - | chr3.3:17179580-17179599 | MS.gene28204:intron | 40.0% | |
| GAAGGAAGAATTGAAGGGTA+TGG | - | chr3.3:17179653-17179672 | MS.gene28204:intron | 40.0% | |
| GAAGGAGAAGGAAGAATTGA+AGG | - | chr3.3:17179647-17179666 | MS.gene28204:intron | 40.0% | |
| GACAATTAAGCAAGGAAAGC+GGG | + | chr3.3:17180186-17180205 | None:intergenic | 40.0% | |
| GATAAGGGATAAGGAGTTAG+AGG | - | chr3.3:17179155-17179174 | MS.gene28204:intron | 40.0% | |
| GCTTTCCTTGCTTAATTGTC+AGG | - | chr3.3:17180186-17180205 | MS.gene28204:intron | 40.0% | |
| GGAATAGGATTTACGGGAAA+TGG | - | chr3.3:17180333-17180352 | MS.gene28204:intron | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | - | chr3.3:17179881-17179900 | MS.gene28204:intron | 40.0% | |
| TCATAACCTTGCAAGCAAGA+GGG | - | chr3.3:17179406-17179425 | MS.gene28204:intron | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | + | chr3.3:17180279-17180298 | None:intergenic | 40.0% | |
| TGACCATTTAACCAGAGACA+TGG | + | chr3.3:17179355-17179374 | None:intergenic | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | + | chr3.3:17180081-17180100 | None:intergenic | 40.0% | |
| TTCATAACCTTGCAAGCAAG+AGG | - | chr3.3:17179405-17179424 | MS.gene28204:intron | 40.0% | |
| TTGAACCTAAACACATGTGC+AGG | + | chr3.3:17178529-17178548 | None:intergenic | 40.0% | |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | - | chr3.3:17179629-17179648 | MS.gene28204:intron | 40.0% |
| ! | ATGCAATAAGATGGGGTGTT+GGG | - | chr3.3:17179115-17179134 | MS.gene28204:intron | 40.0% |
| ! | GGATGGATAGAAGGTTTGTT+TGG | + | chr3.3:17179298-17179317 | None:intergenic | 40.0% |
| !! | CATCGATTTGGTGATGTCTT+TGG | - | chr3.3:17179936-17179955 | MS.gene28204:intron | 40.0% |
| !! | GTATCTTGAAGGCATCGATT+TGG | - | chr3.3:17179924-17179943 | MS.gene28204:intron | 40.0% |
| !!! | GGTTCCATTGACGTTTTTTC+CGG | + | chr3.3:17180550-17180569 | None:intergenic | 40.0% |
| AAACTAAGCAGATGCTGAGC+CGG | - | chr3.3:17180528-17180547 | MS.gene28204:CDS | 45.0% | |
| AATTAAGCAAGGAAAGCGGG+AGG | + | chr3.3:17180183-17180202 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3.3:17179236-17179255 | None:intergenic | 45.0% | |
| AGTACGGATGGATGGATAGA+AGG | + | chr3.3:17179307-17179326 | None:intergenic | 45.0% | |
| CATGCAATAAGATGGGGTGT+TGG | - | chr3.3:17179114-17179133 | MS.gene28204:intron | 45.0% | |
| CATTGCCTGCACATGTGTTT+AGG | - | chr3.3:17178521-17178540 | MS.gene28204:intron | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | - | chr3.3:17180293-17180312 | MS.gene28204:intron | 45.0% | |
| CGTCAATGGAACCCAGAATA+TGG | - | chr3.3:17180557-17180576 | MS.gene28204:CDS | 45.0% | |
| CTATGTGGCAGTGTTATGTC+TGG | - | chr3.3:17178580-17178599 | MS.gene28204:intron | 45.0% | |
| CTGGTACGAGATAAGGGATA+AGG | - | chr3.3:17179146-17179165 | MS.gene28204:intron | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | - | chr3.3:17180196-17180215 | MS.gene28204:intron | 45.0% | |
| GAGTGTAGAGATGTTACCTG+TGG | + | chr3.3:17178433-17178452 | None:intergenic | 45.0% | |
| GATAAGGAGTTAGAGGTCCT+GGG | - | chr3.3:17179162-17179181 | MS.gene28204:intron | 45.0% | |
| GTCCTGGGTTCAAACTCAAA+AGG | - | chr3.3:17179177-17179196 | MS.gene28204:intron | 45.0% | |
| TATCCCTTATCTCGTACCAG+CGG | + | chr3.3:17179146-17179165 | None:intergenic | 45.0% | |
| TGAGCCGGAAAAAACGTCAA+TGG | - | chr3.3:17180543-17180562 | MS.gene28204:CDS | 45.0% | |
| ! | AGGAAGCACGAACATAGACA+AGG | + | chr3.3:17178609-17178628 | None:intergenic | 45.0% |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | - | chr3.3:17180300-17180319 | MS.gene28204:intron | 45.0% |
| !!! | GTCCTTTTGAGTTTGAACCC+AGG | + | chr3.3:17179182-17179201 | None:intergenic | 45.0% |
| AGCAAACGGTATGTCCTGTC+TGG | - | chr3.3:17178955-17178974 | MS.gene28204:intron | 50.0% | |
| AGTCAACCCTCTTGCTTGCA+AGG | + | chr3.3:17179415-17179434 | None:intergenic | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | + | chr3.3:17180167-17180186 | None:intergenic | 50.0% | |
| GACAGGACATACCGTTTGCT+TGG | + | chr3.3:17178955-17178974 | None:intergenic | 50.0% | |
| GCAAACGGTATGTCCTGTCT+GGG | - | chr3.3:17178956-17178975 | MS.gene28204:intron | 50.0% | |
| GGATAAGGAGTTAGAGGTCC+TGG | - | chr3.3:17179161-17179180 | MS.gene28204:intron | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | - | chr3.3:17180260-17180279 | MS.gene28204:intron | 50.0% | |
| TGCGCCCTGACAATTAAGCA+AGG | + | chr3.3:17180194-17180213 | None:intergenic | 50.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr3.3:17180385-17180404 | MS.gene28204:intron | 55.0% | |
| AGCTCCGCTGGTACGAGATA+AGG | - | chr3.3:17179139-17179158 | MS.gene28204:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr3.3:17180386-17180405 | MS.gene28204:intron | 55.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | + | chr3.3:17180168-17180187 | None:intergenic | 55.0% | |
| GCTCCGCTGGTACGAGATAA+GGG | - | chr3.3:17179140-17179159 | MS.gene28204:intron | 55.0% | |
| GCTCTCTGCAACCATGTCTC+TGG | - | chr3.3:17179341-17179360 | MS.gene28204:CDS | 55.0% | |
| ATGGCTGGCAGAGGAGGATG+GGG | - | chr3.3:17178349-17178368 | MS.gene28204:CDS | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr3.3:17180398-17180417 | MS.gene28204:intron | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr3.3:17180398-17180417 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr3.3:17180397-17180416 | MS.gene28204:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr3.3:17180397-17180416 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr3.3:17180381-17180400 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr3.3:17180413-17180432 | None:intergenic | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr3.3:17180396-17180415 | MS.gene28204:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr3.3:17180411-17180430 | MS.gene28204:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr3.3:17180392-17180411 | MS.gene28204:intron | 65.0% | |
| CTGGCAGAGGAGGATGGGGA+CGG | - | chr3.3:17178353-17178372 | MS.gene28204:CDS | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr3.3:17180391-17180410 | MS.gene28204:intron | 65.0% | |
| TGGCAGAGGAGGATGGGGAC+GGG | - | chr3.3:17178354-17178373 | MS.gene28204:CDS | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr3.3:17180380-17180399 | None:intergenic | 65.0% |
| AGGAGGATGGGGACGGGGAC+GGG | - | chr3.3:17178360-17178379 | MS.gene28204:CDS | 70.0% | |
| GAGGAGGATGGGGACGGGGA+CGG | - | chr3.3:17178359-17178378 | MS.gene28204:CDS | 70.0% | |
| GGCAGAGGAGGATGGGGACG+GGG | - | chr3.3:17178355-17178374 | MS.gene28204:CDS | 70.0% | |
| !! | GGGGTGTTGGGTAGCTCCGC+TGG | - | chr3.3:17179127-17179146 | MS.gene28204:intron | 70.0% |
| ATGGGGACGGGGACGGGGAC+GGG | - | chr3.3:17178366-17178385 | MS.gene28204:CDS | 75.0% | |
| GATGGGGACGGGGACGGGGA+CGG | - | chr3.3:17178365-17178384 | MS.gene28204:CDS | 75.0% | |
| GGAGGATGGGGACGGGGACG+GGG | - | chr3.3:17178361-17178380 | MS.gene28204:CDS | 75.0% | |
| ! | CGGGGACGGGGACGGGGAAG+AGG | - | chr3.3:17178373-17178392 | MS.gene28204:CDS | 80.0% |
| ! | TGGGGACGGGGACGGGGACG+GGG | - | chr3.3:17178367-17178386 | MS.gene28204:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17178349 | 17180592 | 17178349 | ID=MS.gene28204 |
| chr3.3 | mRNA | 17178349 | 17180592 | 17178349 | ID=MS.gene28204.t1;Parent=MS.gene28204 |
| chr3.3 | exon | 17180506 | 17180592 | 17180506 | ID=MS.gene28204.t1.exon1;Parent=MS.gene28204.t1 |
| chr3.3 | CDS | 17180506 | 17180592 | 17180506 | ID=cds.MS.gene28204.t1;Parent=MS.gene28204.t1 |
| chr3.3 | exon | 17179272 | 17179404 | 17179272 | ID=MS.gene28204.t1.exon2;Parent=MS.gene28204.t1 |
| chr3.3 | CDS | 17179272 | 17179404 | 17179272 | ID=cds.MS.gene28204.t1;Parent=MS.gene28204.t1 |
| chr3.3 | exon | 17178620 | 17178733 | 17178620 | ID=MS.gene28204.t1.exon3;Parent=MS.gene28204.t1 |
| chr3.3 | CDS | 17178620 | 17178733 | 17178620 | ID=cds.MS.gene28204.t1;Parent=MS.gene28204.t1 |
| chr3.3 | exon | 17178349 | 17178416 | 17178349 | ID=MS.gene28204.t1.exon4;Parent=MS.gene28204.t1 |
| chr3.3 | CDS | 17178349 | 17178416 | 17178349 | ID=cds.MS.gene28204.t1;Parent=MS.gene28204.t1 |
| Gene Sequence |
| Protein sequence |
