Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24247.t1 | RHN77497.1 | 100 | 76 | 0 | 0 | 1 | 76 | 62 | 137 | 5.40E-35 | 156.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24247.t1 | Q9FWS4 | 76.3 | 76 | 16 | 1 | 1 | 76 | 71 | 144 | 1.7e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24247.t1 | G8A1R5 | 100.0 | 76 | 0 | 0 | 1 | 76 | 61 | 136 | 3.9e-35 | 156.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene24247 | 0.837356 | 5.46E-57 | -1.69E-46 |
| MS.gene049151 | MS.gene24247 | 0.815315 | 9.84E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene24247 | 0.829347 | 5.42E-55 | -1.69E-46 |
| MS.gene049195 | MS.gene24247 | 0.840036 | 1.11E-57 | -1.69E-46 |
| MS.gene049260 | MS.gene24247 | 0.867205 | 1.62E-65 | -1.69E-46 |
| MS.gene049297 | MS.gene24247 | 0.853323 | 2.58E-61 | -1.69E-46 |
| MS.gene04933 | MS.gene24247 | 0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene24247 | 0.841725 | 3.99E-58 | -1.69E-46 |
| MS.gene049378 | MS.gene24247 | 0.846143 | 2.61E-59 | -1.69E-46 |
| MS.gene049426 | MS.gene24247 | 0.807916 | 4.00E-50 | -1.69E-46 |
| MS.gene049491 | MS.gene24247 | 0.809175 | 2.15E-50 | -1.69E-46 |
| MS.gene049599 | MS.gene24247 | -0.804697 | 1.91E-49 | -1.69E-46 |
| MS.gene049681 | MS.gene24247 | 0.808533 | 2.96E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene24247 | 0.883483 | 4.32E-71 | -1.69E-46 |
| MS.gene049910 | MS.gene24247 | 0.874889 | 4.75E-68 | -1.69E-46 |
| MS.gene049915 | MS.gene24247 | 0.812403 | 4.31E-51 | -1.69E-46 |
| MS.gene049993 | MS.gene24247 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene24247 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene24247 | 0.843184 | 1.64E-58 | -1.69E-46 |
| MS.gene050168 | MS.gene24247 | 0.835279 | 1.84E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene24247 | 0.845496 | 3.92E-59 | -1.69E-46 |
| MS.gene050227 | MS.gene24247 | 0.840791 | 7.03E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene24247 | 0.839777 | 1.29E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene24247 | 0.887908 | 9.44E-73 | -1.69E-46 |
| MS.gene050319 | MS.gene24247 | -0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene24247 | -0.841357 | 4.99E-58 | -1.69E-46 |
| MS.gene050397 | MS.gene24247 | 0.81426 | 1.69E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene24247 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene24247 | 0.823395 | 1.42E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene24247 | 0.857165 | 1.97E-62 | -1.69E-46 |
| MS.gene050529 | MS.gene24247 | 0.843412 | 1.42E-58 | -1.69E-46 |
| MS.gene050558 | MS.gene24247 | 0.871523 | 6.40E-67 | -1.69E-46 |
| MS.gene050560 | MS.gene24247 | 0.8139 | 2.03E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene24247 | -0.843927 | 1.04E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene24247 | 0.842451 | 2.56E-58 | -1.69E-46 |
| MS.gene050650 | MS.gene24247 | 0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene24247 | 0.804427 | 2.17E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene24247 | 0.802508 | 5.43E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene24247 | 0.818175 | 2.25E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene24247 | 0.845278 | 4.49E-59 | -1.69E-46 |
| MS.gene050987 | MS.gene24247 | 0.805483 | 1.31E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene24247 | 0.837721 | 4.40E-57 | -1.69E-46 |
| MS.gene05119 | MS.gene24247 | -0.853015 | 3.16E-61 | -1.69E-46 |
| MS.gene051471 | MS.gene24247 | 0.839201 | 1.83E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene24247 | 0.806038 | 9.99E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene24247 | 0.847726 | 9.64E-60 | -1.69E-46 |
| MS.gene051662 | MS.gene24247 | 0.8529 | 3.41E-61 | -1.69E-46 |
| MS.gene051663 | MS.gene24247 | 0.859284 | 4.60E-63 | -1.69E-46 |
| MS.gene051860 | MS.gene24247 | 0.875267 | 3.52E-68 | -1.69E-46 |
| MS.gene051983 | MS.gene24247 | 0.857268 | 1.83E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene24247 | -0.82253 | 2.26E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene24247 | 0.857295 | 1.80E-62 | -1.69E-46 |
| MS.gene052078 | MS.gene24247 | 0.838465 | 2.83E-57 | -1.69E-46 |
| MS.gene052176 | MS.gene24247 | 0.829822 | 4.15E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene24247 | 0.864872 | 8.90E-65 | -1.69E-46 |
| MS.gene052188 | MS.gene24247 | 0.841135 | 5.71E-58 | -1.69E-46 |
| MS.gene052207 | MS.gene24247 | 0.827491 | 1.52E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene24247 | 0.838107 | 3.50E-57 | -1.69E-46 |
| MS.gene052255 | MS.gene24247 | 0.816218 | 6.19E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene24247 | -0.83329 | 5.80E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene24247 | 0.826088 | 3.29E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene24247 | 0.804859 | 1.76E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene24247 | 0.846696 | 1.85E-59 | -1.69E-46 |
| MS.gene052376 | MS.gene24247 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene24247 | 0.803558 | 3.29E-49 | -1.69E-46 |
| MS.gene052778 | MS.gene24247 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene24247 | 0.811458 | 6.93E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene24247 | 0.802092 | 6.61E-49 | -1.69E-46 |
| MS.gene053085 | MS.gene24247 | 0.801966 | 7.02E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene24247 | 0.817009 | 4.12E-52 | -1.69E-46 |
| MS.gene053184 | MS.gene24247 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene24247 | 0.83715 | 6.16E-57 | -1.69E-46 |
| MS.gene053630 | MS.gene24247 | 0.826829 | 2.19E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene24247 | 0.923966 | 1.32E-89 | -1.69E-46 |
| MS.gene053907 | MS.gene24247 | 0.841095 | 5.85E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene24247 | 0.825659 | 4.16E-54 | -1.69E-46 |
| MS.gene053971 | MS.gene24247 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene24247 | 0.81106 | 8.46E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene24247 | 0.841279 | 5.23E-58 | -1.69E-46 |
| MS.gene054012 | MS.gene24247 | 0.823889 | 1.09E-53 | -1.69E-46 |
| MS.gene054013 | MS.gene24247 | 0.818443 | 1.96E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene24247 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene24247 | 0.853472 | 2.34E-61 | -1.69E-46 |
| MS.gene054184 | MS.gene24247 | 0.804582 | 2.02E-49 | -1.69E-46 |
| MS.gene054185 | MS.gene24247 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene054214 | MS.gene24247 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene24247 | 0.832418 | 9.56E-56 | -1.69E-46 |
| MS.gene054379 | MS.gene24247 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene24247 | 0.873178 | 1.80E-67 | -1.69E-46 |
| MS.gene054542 | MS.gene24247 | 0.818437 | 1.96E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene24247 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene054667 | MS.gene24247 | 0.81383 | 2.10E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene24247 | 0.8247 | 7.00E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene24247 | 0.888559 | 5.30E-73 | -1.69E-46 |
| MS.gene054942 | MS.gene24247 | 0.85375 | 1.94E-61 | -1.69E-46 |
| MS.gene054983 | MS.gene24247 | 0.876407 | 1.43E-68 | -1.69E-46 |
| MS.gene055116 | MS.gene24247 | 0.822303 | 2.55E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene24247 | 0.857359 | 1.72E-62 | -1.69E-46 |
| MS.gene055356 | MS.gene24247 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene24247 | 0.845246 | 4.58E-59 | -1.69E-46 |
| MS.gene055390 | MS.gene24247 | 0.828958 | 6.73E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene24247 | 0.881874 | 1.67E-70 | -1.69E-46 |
| MS.gene055428 | MS.gene24247 | 0.891229 | 4.80E-74 | -1.69E-46 |
| MS.gene05553 | MS.gene24247 | 0.862777 | 3.98E-64 | -1.69E-46 |
| MS.gene055604 | MS.gene24247 | 0.870475 | 1.42E-66 | -1.69E-46 |
| MS.gene055712 | MS.gene24247 | 0.857156 | 1.98E-62 | -1.69E-46 |
| MS.gene056069 | MS.gene24247 | -0.837332 | 5.53E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene24247 | 0.811966 | 5.37E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene24247 | 0.833521 | 5.09E-56 | -1.69E-46 |
| MS.gene056451 | MS.gene24247 | 0.822064 | 2.89E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene24247 | 0.86065 | 1.78E-63 | -1.69E-46 |
| MS.gene056659 | MS.gene24247 | 0.801912 | 7.20E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene24247 | 0.850845 | 1.30E-60 | -1.69E-46 |
| MS.gene056772 | MS.gene24247 | 0.836492 | 9.07E-57 | -1.69E-46 |
| MS.gene056875 | MS.gene24247 | 0.84345 | 1.39E-58 | -1.69E-46 |
| MS.gene056899 | MS.gene24247 | -0.824634 | 7.26E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene24247 | 0.849545 | 3.02E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene24247 | 0.880613 | 4.75E-70 | -1.69E-46 |
| MS.gene057121 | MS.gene24247 | 0.866183 | 3.44E-65 | -1.69E-46 |
| MS.gene057200 | MS.gene24247 | 0.820863 | 5.48E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene24247 | 0.864288 | 1.35E-64 | -1.69E-46 |
| MS.gene057260 | MS.gene24247 | 0.821115 | 4.79E-53 | -1.69E-46 |
| MS.gene05733 | MS.gene24247 | 0.802471 | 5.52E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene24247 | 0.889587 | 2.12E-73 | -1.69E-46 |
| MS.gene057448 | MS.gene24247 | 0.816181 | 6.31E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene24247 | 0.81946 | 1.15E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene24247 | 0.856754 | 2.60E-62 | -1.69E-46 |
| MS.gene057639 | MS.gene24247 | 0.823776 | 1.15E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene24247 | 0.817287 | 3.57E-52 | -1.69E-46 |
| MS.gene057750 | MS.gene24247 | 0.839962 | 1.16E-57 | -1.69E-46 |
| MS.gene057754 | MS.gene24247 | 0.820239 | 7.62E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene24247 | 0.80418 | 2.45E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene24247 | 0.885476 | 7.87E-72 | -1.69E-46 |
| MS.gene05811 | MS.gene24247 | 0.857424 | 1.65E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene24247 | 0.874643 | 5.75E-68 | -1.69E-46 |
| MS.gene058233 | MS.gene24247 | 0.84381 | 1.11E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene24247 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene24247 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene24247 | 0.820674 | 6.05E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene24247 | 0.843857 | 1.08E-58 | -1.69E-46 |
| MS.gene058710 | MS.gene24247 | 0.835407 | 1.71E-56 | -1.69E-46 |
| MS.gene058749 | MS.gene24247 | 0.86129 | 1.14E-63 | -1.69E-46 |
| MS.gene058833 | MS.gene24247 | 0.805057 | 1.60E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene24247 | 0.842451 | 2.57E-58 | -1.69E-46 |
| MS.gene05886 | MS.gene24247 | 0.850356 | 1.79E-60 | -1.69E-46 |
| MS.gene059033 | MS.gene24247 | -0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene24247 | 0.870589 | 1.30E-66 | -1.69E-46 |
| MS.gene059124 | MS.gene24247 | 0.822102 | 2.83E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene24247 | 0.838499 | 2.77E-57 | -1.69E-46 |
| MS.gene059294 | MS.gene24247 | 0.817952 | 2.53E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene24247 | 0.822615 | 2.15E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene24247 | 0.835258 | 1.86E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene24247 | 0.883468 | 4.38E-71 | -1.69E-46 |
| MS.gene059676 | MS.gene24247 | 0.819578 | 1.08E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene24247 | 0.827797 | 1.28E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene24247 | 0.839519 | 1.51E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene24247 | 0.83408 | 3.69E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene24247 | 0.870382 | 1.52E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene24247 | 0.885918 | 5.37E-72 | -1.69E-46 |
| MS.gene059899 | MS.gene24247 | 0.86025 | 2.35E-63 | -1.69E-46 |
| MS.gene060137 | MS.gene24247 | -0.819193 | 1.32E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene24247 | 0.839023 | 2.03E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene24247 | 0.813792 | 2.14E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene24247 | 0.842242 | 2.91E-58 | -1.69E-46 |
| MS.gene060480 | MS.gene24247 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene24247 | 0.834766 | 2.48E-56 | -1.69E-46 |
| MS.gene060559 | MS.gene24247 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene24247 | 0.804307 | 2.30E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene24247 | -0.810847 | 9.40E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene24247 | 0.925558 | 1.56E-90 | -1.69E-46 |
| MS.gene061051 | MS.gene24247 | -0.806702 | 7.24E-50 | -1.69E-46 |
| MS.gene061085 | MS.gene24247 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene061112 | MS.gene24247 | 0.821042 | 4.98E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene24247 | -0.856267 | 3.61E-62 | -1.69E-46 |
| MS.gene061159 | MS.gene24247 | 0.823976 | 1.04E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene24247 | 0.82293 | 1.82E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24247.t1 | MTR_1g022450 | 100.000 | 76 | 0 | 0 | 1 | 76 | 61 | 136 | 4.57e-51 | 156 |
| MS.gene24247.t1 | MTR_1g022450 | 100.000 | 76 | 0 | 0 | 1 | 76 | 59 | 134 | 4.79e-51 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24247.t1 | AT1G75350 | 84.127 | 63 | 10 | 0 | 1 | 63 | 71 | 133 | 6.09e-36 | 118 |
Find 24 sgRNAs with CRISPR-Local
Find 24 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACCACATACTCTTTC+TGG | 0.120517 | 1.2:+2041772 | None:intergenic |
| ATGGAGATTCCTGTGCTTAA+AGG | 0.247138 | 1.2:-2041642 | MS.gene24247:CDS |
| CGGTGAATTGTCGCAGATTA+TGG | 0.250630 | 1.2:-2041661 | MS.gene24247:CDS |
| AGGTAACAGGTCTGCTCTTA+TGG | 0.321423 | 1.2:-2041721 | MS.gene24247:CDS |
| GACCTGTTACCTAGGTAAAA+TGG | 0.333258 | 1.2:+2041732 | None:intergenic |
| TTAATCCCTTTACGTCTAGA+AGG | 0.369196 | 1.2:+2041606 | None:intergenic |
| TTATTCCTTCTAGACGTAAA+GGG | 0.415844 | 1.2:-2041611 | MS.gene24247:CDS |
| ATCAACCACATACTCTTTCT+GGG | 0.433365 | 1.2:+2041773 | None:intergenic |
| GTTATTCCTTCTAGACGTAA+AGG | 0.445368 | 1.2:-2041612 | MS.gene24247:CDS |
| TATGTGGTTGATGTTTGGTC+TGG | 0.461863 | 1.2:-2041762 | MS.gene24247:CDS |
| TCTTATGGTGAGTGATGATC+AGG | 0.475882 | 1.2:-2041706 | MS.gene24247:CDS |
| AAGAGTATGTGGTTGATGTT+TGG | 0.479372 | 1.2:-2041767 | MS.gene24247:CDS |
| GAGAAGTTTCGTAAGAAGTT+CGG | 0.485181 | 1.2:-2041681 | MS.gene24247:CDS |
| AACGAGCTTGTGATGACAAC+TGG | 0.499125 | 1.2:-2041801 | None:intergenic |
| ATGTGGTTGATGTTTGGTCT+GGG | 0.499973 | 1.2:-2041761 | MS.gene24247:CDS |
| TAAGAGCAGACCTGTTACCT+AGG | 0.535799 | 1.2:+2041724 | None:intergenic |
| AAAGGGATTAAAAGTGGTGG+AGG | 0.538533 | 1.2:-2041594 | MS.gene24247:CDS |
| ACAATCTCACCTTTAAGCAC+AGG | 0.575557 | 1.2:+2041633 | None:intergenic |
| AGACGTAAAGGGATTAAAAG+TGG | 0.579688 | 1.2:-2041600 | MS.gene24247:CDS |
| CGTAAAGGGATTAAAAGTGG+TGG | 0.606986 | 1.2:-2041597 | MS.gene24247:CDS |
| AAGGGATTAAAAGTGGTGGA+GGG | 0.644540 | 1.2:-2041593 | MS.gene24247:CDS |
| TGTTACCTAGGTAAAATGGA+TGG | 0.664203 | 1.2:+2041736 | None:intergenic |
| TGGAACCCAGAAAGAGTATG+TGG | 0.674951 | 1.2:-2041778 | MS.gene24247:CDS |
| GAGCTTGTGATGACAACTGG+TGG | 0.675964 | 1.2:-2041798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTATTCCTTCTAGACGTAAA+GGG | - | chr1.2:2041759-2041778 | MS.gene24247:CDS | 30.0% | |
| AGACGTAAAGGGATTAAAAG+TGG | - | chr1.2:2041770-2041789 | MS.gene24247:CDS | 35.0% | |
| ATCAACCACATACTCTTTCT+GGG | + | chr1.2:2041600-2041619 | None:intergenic | 35.0% | |
| GAGAAGTTTCGTAAGAAGTT+CGG | - | chr1.2:2041689-2041708 | MS.gene24247:CDS | 35.0% | |
| GTTATTCCTTCTAGACGTAA+AGG | - | chr1.2:2041758-2041777 | MS.gene24247:CDS | 35.0% | |
| TGTTACCTAGGTAAAATGGA+TGG | + | chr1.2:2041637-2041656 | None:intergenic | 35.0% | |
| TTAATCCCTTTACGTCTAGA+AGG | + | chr1.2:2041767-2041786 | None:intergenic | 35.0% | |
| ! | AAGAGTATGTGGTTGATGTT+TGG | - | chr1.2:2041603-2041622 | MS.gene24247:CDS | 35.0% |
| ! | ATCCATTTTACCTAGGTAAC+AGG | - | chr1.2:2041636-2041655 | MS.gene24247:CDS | 35.0% |
| AAAGGGATTAAAAGTGGTGG+AGG | - | chr1.2:2041776-2041795 | MS.gene24247:CDS | 40.0% | |
| ACAATCTCACCTTTAAGCAC+AGG | + | chr1.2:2041740-2041759 | None:intergenic | 40.0% | |
| ATGGAGATTCCTGTGCTTAA+AGG | - | chr1.2:2041728-2041747 | MS.gene24247:CDS | 40.0% | |
| CATCAACCACATACTCTTTC+TGG | + | chr1.2:2041601-2041620 | None:intergenic | 40.0% | |
| CGTAAAGGGATTAAAAGTGG+TGG | - | chr1.2:2041773-2041792 | MS.gene24247:CDS | 40.0% | |
| GACCTGTTACCTAGGTAAAA+TGG | + | chr1.2:2041641-2041660 | None:intergenic | 40.0% | |
| TCTTATGGTGAGTGATGATC+AGG | - | chr1.2:2041664-2041683 | MS.gene24247:CDS | 40.0% | |
| ! | AAGGGATTAAAAGTGGTGGA+GGG | - | chr1.2:2041777-2041796 | MS.gene24247:CDS | 40.0% |
| ! | ATGTGGTTGATGTTTGGTCT+GGG | - | chr1.2:2041609-2041628 | MS.gene24247:CDS | 40.0% |
| ! | TATGTGGTTGATGTTTGGTC+TGG | - | chr1.2:2041608-2041627 | MS.gene24247:CDS | 40.0% |
| AGGTAACAGGTCTGCTCTTA+TGG | - | chr1.2:2041649-2041668 | MS.gene24247:CDS | 45.0% | |
| CGGTGAATTGTCGCAGATTA+TGG | - | chr1.2:2041709-2041728 | MS.gene24247:CDS | 45.0% | |
| TAAGAGCAGACCTGTTACCT+AGG | + | chr1.2:2041649-2041668 | None:intergenic | 45.0% | |
| ! | GGGAACCATCCATTTTACCT+AGG | - | chr1.2:2041629-2041648 | MS.gene24247:CDS | 45.0% |
| ! | TGGAACCCAGAAAGAGTATG+TGG | - | chr1.2:2041592-2041611 | MS.gene24247:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2041581 | 2041811 | 2041581 | ID=MS.gene24247 |
| chr1.2 | mRNA | 2041581 | 2041811 | 2041581 | ID=MS.gene24247.t1;Parent=MS.gene24247 |
| chr1.2 | exon | 2041581 | 2041811 | 2041581 | ID=MS.gene24247.t1.exon1;Parent=MS.gene24247.t1 |
| chr1.2 | CDS | 2041581 | 2041811 | 2041581 | ID=cds.MS.gene24247.t1;Parent=MS.gene24247.t1 |
| Gene Sequence |
| Protein sequence |
