AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052972

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052972.t1 MTR_4g005330 99.346 306 2 0 42 347 56 361 0.0 627
MS.gene052972.t1 MTR_4g005330 99.322 295 2 0 53 347 1 295 0.0 598
MS.gene052972.t1 MTR_1g012030 41.297 293 154 3 49 340 136 411 1.86e-74 236
MS.gene052972.t1 MTR_3g107510 40.956 293 155 4 49 340 119 394 9.79e-73 231
MS.gene052972.t1 MTR_4g114320 38.689 305 168 4 37 340 109 395 5.34e-72 229
MS.gene052972.t1 MTR_2g436930 29.102 323 177 8 54 339 17 324 6.31e-36 133
MS.gene052972.t1 MTR_5g009500 27.744 328 188 8 50 346 36 345 2.38e-34 129
MS.gene052972.t1 MTR_5g009500 29.437 231 143 7 130 343 1 228 5.83e-15 75.5
MS.gene052972.t1 MTR_4g119770 27.327 333 188 8 46 339 8 325 2.70e-34 129
MS.gene052972.t1 MTR_3g104600 28.213 319 174 9 49 336 32 326 2.96e-34 129
MS.gene052972.t1 MTR_8g096050 30.693 303 166 10 50 336 225 499 5.43e-34 131
MS.gene052972.t1 MTR_8g096050 29.609 179 118 3 164 338 228 402 2.67e-14 73.9
MS.gene052972.t1 MTR_8g027975 28.267 329 187 8 50 346 49 360 9.79e-34 128
MS.gene052972.t1 MTR_8g027975 28.696 230 139 6 131 347 28 245 3.11e-15 76.3
MS.gene052972.t1 MTR_3g098460 29.003 331 196 11 29 342 175 483 1.17e-33 130
MS.gene052972.t1 MTR_7g084400 29.139 302 181 8 50 342 211 488 1.34e-29 119
MS.gene052972.t1 MTR_6g091800 25.079 315 190 9 50 341 17 308 4.46e-29 114
MS.gene052972.t1 MTR_7g068340 29.268 287 165 8 63 339 98 356 9.30e-29 115
MS.gene052972.t1 MTR_7g068340 23.958 192 125 2 49 240 184 354 1.41e-12 68.6
MS.gene052972.t1 MTR_7g064980 25.733 307 198 6 49 339 22 314 1.43e-28 113
MS.gene052972.t1 MTR_2g436930 31.048 248 136 6 112 339 2 234 5.49e-28 109
MS.gene052972.t1 MTR_2g436930 24.378 201 126 3 52 236 38 228 3.12e-14 71.6
MS.gene052972.t1 MTR_1g097890 29.231 325 186 10 23 339 16 304 1.33e-27 110
MS.gene052972.t1 MTR_5g081150 25.987 304 199 6 49 339 31 321 6.52e-27 108
MS.gene052972.t1 MTR_8g090210 26.452 310 186 6 54 342 112 400 2.38e-26 108
MS.gene052972.t1 MTR_6g091800 24.611 321 208 8 50 341 17 332 3.03e-26 107
MS.gene052972.t1 MTR_4g119770 26.966 267 151 7 46 283 8 259 2.21e-25 103
MS.gene052972.t1 MTR_4g119770 25.641 195 119 4 165 336 16 207 7.13e-14 71.2
MS.gene052972.t1 MTR_3g074490 25.484 310 189 6 54 342 118 406 4.21e-25 105
MS.gene052972.t1 MTR_7g109135 29.739 306 174 10 54 340 24 307 1.12e-24 102
MS.gene052972.t1 MTR_7g109135 28.426 197 125 5 162 343 21 216 1.85e-12 67.8
MS.gene052972.t1 MTR_7g109135 29.431 299 177 9 54 340 24 300 9.91e-24 99.8
MS.gene052972.t1 MTR_6g091800 25.591 254 146 8 50 283 17 247 3.72e-23 97.4
MS.gene052972.t1 MTR_6g091800 26.842 190 116 6 165 336 22 206 4.98e-11 62.8
MS.gene052972.t1 MTR_6g091800 25.591 254 146 8 50 283 17 247 4.39e-23 97.1
MS.gene052972.t1 MTR_6g091800 26.842 190 116 6 165 336 22 206 3.83e-11 63.2
MS.gene052972.t1 MTR_6g034145 24.275 276 168 8 85 341 1 254 5.75e-23 96.7
MS.gene052972.t1 MTR_4g016730 27.215 316 189 10 34 339 71 355 9.07e-23 98.2
MS.gene052972.t1 MTR_8g092080 28.247 308 176 11 41 343 42 309 2.16e-22 96.3
MS.gene052972.t1 MTR_6g091800 24.013 304 197 8 50 324 17 315 1.09e-21 94.4
MS.gene052972.t1 MTR_6g092210 22.878 271 172 6 85 341 1 248 1.63e-21 92.4
MS.gene052972.t1 MTR_3g104500 26.045 311 183 11 50 336 32 319 1.77e-20 90.9
MS.gene052972.t1 MTR_6g091800 25.000 260 164 7 50 283 17 271 2.43e-20 90.1
MS.gene052972.t1 MTR_6g091800 25.000 260 164 7 50 283 17 271 2.62e-20 90.1
MS.gene052972.t1 MTR_1g087840 28.082 292 173 8 66 340 33 304 7.33e-19 86.3
MS.gene052972.t1 MTR_8g076760 25.685 292 173 7 66 333 28 299 5.92e-18 83.6
MS.gene052972.t1 MTR_5g073040 24.172 302 192 8 51 339 37 314 1.87e-17 82.4
MS.gene052972.t1 MTR_8g098240 24.080 299 193 6 54 345 322 593 1.14e-16 81.6
MS.gene052972.t1 MTR_7g084400 27.753 227 141 6 50 270 205 414 1.56e-16 80.5
MS.gene052972.t1 MTR_7g084400 26.842 190 126 4 164 344 208 393 1.75e-13 71.2
MS.gene052972.t1 MTR_6g091910 27.979 193 119 6 165 341 22 210 1.95e-16 77.4
MS.gene052972.t1 MTR_7g109135 29.084 251 145 8 101 340 1 229 2.75e-16 77.8
MS.gene052972.t1 MTR_2g098070 24.111 253 166 5 83 327 107 341 7.87e-16 78.2
MS.gene052972.t1 MTR_4g012850 23.333 300 203 5 42 333 6 286 8.99e-16 77.4
MS.gene052972.t1 MTR_3g028590 23.667 300 187 7 49 327 90 368 2.84e-15 76.6
MS.gene052972.t1 MTR_3g028590 23.667 300 187 7 49 327 94 372 3.21e-15 76.6
MS.gene052972.t1 MTR_7g109135 30.986 213 120 7 139 340 12 208 4.89e-15 73.6
MS.gene052972.t1 MTR_6g034515 25.430 291 172 7 62 336 77 338 5.06e-15 75.9
MS.gene052972.t1 MTR_4g078545 23.826 298 185 7 51 327 74 350 5.32e-15 75.5
MS.gene052972.t1 MTR_1g095780 26.027 292 174 11 49 333 522 778 6.96e-15 76.3
MS.gene052972.t1 MTR_8g107270 23.077 312 172 10 50 327 16 293 7.25e-15 74.7
MS.gene052972.t1 MTR_8g036880 23.411 299 186 7 51 327 101 378 3.39e-14 73.6
MS.gene052972.t1 MTR_5g055410 27.018 285 171 11 66 333 35 299 1.31e-13 71.2
MS.gene052972.t1 MTR_5g081910 22.476 307 186 11 65 333 21 313 2.05e-13 70.9
MS.gene052972.t1 MTR_2g032610 24.000 300 197 9 38 321 17 301 1.57e-12 67.8
MS.gene052972.t1 MTR_7g015870 27.473 182 114 4 164 332 22 198 2.77e-12 67.4
MS.gene052972.t1 MTR_7g015870 23.826 298 185 8 39 315 10 286 4.27e-11 63.5
MS.gene052972.t1 MTR_7g015870 27.473 182 114 4 164 332 26 202 2.95e-12 67.0
MS.gene052972.t1 MTR_5g081150 23.377 231 154 5 49 269 31 248 5.47e-12 65.5
MS.gene052972.t1 MTR_5g081150 23.377 231 154 5 49 269 31 248 5.70e-12 65.5
MS.gene052972.t1 MTR_3g025800 25.641 312 192 9 50 333 26 325 6.39e-12 66.2
MS.gene052972.t1 MTR_8g066975 25.926 189 126 3 164 339 109 296 1.15e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052972.t1 AT3G20240 75.585 299 73 0 42 340 42 340 4.35e-173 485
MS.gene052972.t1 AT4G32400 39.249 293 160 3 49 340 111 386 5.24e-70 224
MS.gene052972.t1 AT3G21390 29.429 333 177 10 46 337 13 328 7.89e-35 130
MS.gene052972.t1 AT3G21390 29.429 333 177 10 46 337 35 350 8.46e-35 130
MS.gene052972.t1 AT4G01100 29.394 330 182 11 50 346 40 351 3.59e-33 126
MS.gene052972.t1 AT4G01100 28.431 204 130 5 153 343 32 232 2.81e-15 76.3
MS.gene052972.t1 AT5G48970 28.144 334 185 10 46 339 16 334 5.11e-32 123
MS.gene052972.t1 AT4G01100 29.154 319 175 10 61 346 1 301 1.27e-31 121
MS.gene052972.t1 AT3G53940 27.687 307 190 8 49 339 70 360 2.66e-31 121
MS.gene052972.t1 AT4G01100 27.616 344 184 11 50 346 40 365 7.89e-31 120
MS.gene052972.t1 AT4G01100 28.899 218 125 7 153 343 32 246 7.72e-15 75.1
MS.gene052972.t1 AT3G55640 28.239 301 186 7 51 336 37 322 6.54e-30 117
MS.gene052972.t1 AT3G55640 28.239 301 186 7 51 336 37 322 6.54e-30 117
MS.gene052972.t1 AT5G51050 28.523 298 178 7 52 339 223 495 7.76e-30 119
MS.gene052972.t1 AT3G51870 29.655 290 168 8 63 343 102 364 1.45e-29 117
MS.gene052972.t1 AT5G48970 29.044 272 155 7 91 339 7 263 6.99e-28 110
MS.gene052972.t1 AT5G48970 28.218 202 120 8 52 236 64 257 4.59e-14 72.0
MS.gene052972.t1 AT2G37890 25.574 305 197 8 50 339 43 332 7.35e-27 108
MS.gene052972.t1 AT2G37890 29.032 217 116 7 149 336 23 230 2.64e-12 67.4
MS.gene052972.t1 AT1G34065 28.966 290 172 8 50 339 73 328 2.38e-26 107
MS.gene052972.t1 AT5G61810 27.090 299 182 7 52 342 65 335 3.20e-26 107
MS.gene052972.t1 AT1G34065 28.621 290 173 6 50 339 80 335 3.25e-26 107
MS.gene052972.t1 AT5G61810 27.425 299 181 8 52 342 208 478 7.33e-26 108
MS.gene052972.t1 AT5G01500 28.223 287 168 8 63 339 130 388 9.36e-26 107
MS.gene052972.t1 AT5G64970 25.890 309 187 6 55 342 14 301 1.08e-24 102
MS.gene052972.t1 AT5G64970 26.667 330 189 8 45 342 117 425 1.77e-24 103
MS.gene052972.t1 AT1G14560 27.243 301 171 8 63 336 38 317 2.54e-24 102
MS.gene052972.t1 AT4G26180 24.679 312 186 9 50 336 19 306 1.10e-23 100
MS.gene052972.t1 AT1G78180 27.508 309 184 5 54 342 130 418 1.34e-23 101
MS.gene052972.t1 AT5G07320 27.526 287 170 8 59 336 216 473 2.78e-21 95.1
MS.gene052972.t1 AT1G14560 26.923 286 161 8 63 321 38 302 1.58e-20 90.9
MS.gene052972.t1 AT1G14560 26.404 178 113 5 176 336 40 216 5.00e-11 63.5
MS.gene052972.t1 AT4G26180 24.242 297 176 9 50 321 19 291 1.94e-20 90.5
MS.gene052972.t1 AT4G26180 26.396 197 129 6 155 336 13 208 8.33e-13 68.6
MS.gene052972.t1 AT5G66380 26.490 302 181 7 54 333 12 294 9.08e-20 89.0
MS.gene052972.t1 AT5G66380 26.154 195 135 3 154 340 1 194 5.55e-13 69.3
MS.gene052972.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene052972.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene052972.t1 AT4G39460 26.384 307 183 9 41 343 48 315 1.21e-19 88.6
MS.gene052972.t1 AT1G14560 28.426 197 114 4 164 336 26 219 1.57e-19 86.7
MS.gene052972.t1 AT4G11440 25.581 301 188 8 50 339 328 603 1.34e-18 87.4
MS.gene052972.t1 AT4G11440 27.368 190 117 3 163 344 330 506 2.00e-11 65.5
MS.gene052972.t1 AT4G11440 25.581 301 188 8 50 339 328 603 1.34e-18 87.4
MS.gene052972.t1 AT4G11440 27.368 190 117 3 163 344 330 506 2.00e-11 65.5
MS.gene052972.t1 AT5G64970 25.890 309 176 8 45 321 117 404 2.52e-18 85.9
MS.gene052972.t1 AT5G17400 25.379 264 145 6 85 327 57 289 4.89e-18 84.0
MS.gene052972.t1 AT2G47490 27.946 297 170 10 66 342 31 303 1.45e-17 82.4
MS.gene052972.t1 AT1G07030 24.671 304 189 8 51 339 38 316 1.61e-17 82.8
MS.gene052972.t1 AT4G28390 24.832 298 182 7 51 327 82 358 2.48e-17 82.8
MS.gene052972.t1 AT4G28390 24.832 298 182 7 51 327 82 358 2.48e-17 82.8
MS.gene052972.t1 AT3G53940 26.923 234 142 7 49 269 70 287 1.13e-16 79.7
MS.gene052972.t1 AT3G53940 30.457 197 101 6 164 336 74 258 2.23e-13 70.1
MS.gene052972.t1 AT4G03115 25.418 299 189 9 49 338 67 340 1.72e-16 79.7
MS.gene052972.t1 AT4G03115 25.418 299 189 9 49 338 35 308 2.40e-16 79.0
MS.gene052972.t1 AT1G25380 26.183 317 187 11 40 333 8 300 4.18e-16 79.0
MS.gene052972.t1 AT1G25380 26.183 317 187 11 40 333 8 300 4.18e-16 79.0
MS.gene052972.t1 AT3G08580 22.742 299 188 6 51 327 83 360 6.45e-16 78.6
MS.gene052972.t1 AT3G08580 22.742 299 188 6 51 327 83 360 6.45e-16 78.6
MS.gene052972.t1 AT2G30160 23.588 301 194 7 53 339 43 321 7.46e-16 77.8
MS.gene052972.t1 AT5G13490 23.746 299 185 7 51 327 87 364 8.19e-16 78.2
MS.gene052972.t1 AT5G13490 23.746 299 185 7 51 327 87 364 8.19e-16 78.2
MS.gene052972.t1 AT5G56450 23.899 318 190 12 50 339 32 325 1.25e-15 77.0
MS.gene052972.t1 AT3G55640 26.840 231 142 6 51 269 37 252 2.81e-15 75.1
MS.gene052972.t1 AT3G55640 26.840 231 142 6 51 269 37 252 2.81e-15 75.1
MS.gene052972.t1 AT2G35800 25.087 287 182 7 53 336 546 802 3.17e-15 77.4
MS.gene052972.t1 AT4G03115 26.217 267 164 8 80 338 4 245 1.64e-14 72.8
MS.gene052972.t1 AT4G03115 26.172 256 160 7 87 338 7 237 2.06e-14 72.4
MS.gene052972.t1 AT5G42130 26.712 292 168 9 62 336 128 390 4.78e-13 70.1
MS.gene052972.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene052972.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene052972.t1 AT5G46800 23.248 314 197 10 50 339 6 299 1.01e-12 68.2
MS.gene052972.t1 AT5G15640 27.174 184 126 5 164 339 22 205 5.12e-12 66.2
MS.gene052972.t1 AT5G15640 27.174 184 126 5 164 339 29 212 5.73e-12 66.2
MS.gene052972.t1 AT2G17270 23.311 296 184 8 53 336 23 287 7.62e-12 65.9
MS.gene052972.t1 AT2G39970 22.654 309 179 11 68 333 24 315 2.51e-11 64.3
MS.gene052972.t1 AT1G79900 27.879 165 102 2 53 217 111 258 5.90e-11 63.2
MS.gene052972.t1 AT1G72820 22.781 338 205 8 38 338 19 337 7.20e-11 63.2
MS.gene052972.t1 AT1G72820 22.781 338 205 8 38 338 19 337 7.20e-11 63.2

Find 99 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTGCAGCGCCCAAATT+AGG 0.183331 4.2:-93721486 None:intergenic
TCCTGAGATATACCCTAATT+TGG 0.186592 4.2:+93721473 MS.gene052972:CDS
TAAAGACAAGCTCAAATTAA+TGG 0.263095 4.2:-93720708 None:intergenic
TAGATACCTTCAAAACTTCT+AGG 0.264996 4.2:-93720799 None:intergenic
TTGGGGTGCAAGCTGTTTAA+AGG 0.279423 4.2:+93722343 MS.gene052972:CDS
CGTCCGGAGATGCTTATAAT+TGG 0.312484 4.2:+93721660 MS.gene052972:CDS
ATTTGAGCTTGTCTTTATCT+TGG 0.318265 4.2:+93720714 MS.gene052972:CDS
ATTTCACCAACTGCCGTGGC+TGG 0.322741 4.2:+93720737 MS.gene052972:CDS
TCATCCCTATTAGGACTATA+AGG 0.340097 4.2:-93722441 None:intergenic
GAAGGGTCTTTACAGAGGTT+GGG 0.340231 4.2:+93722325 MS.gene052972:CDS
CCAACACAAGCCATTGAGTT+TGG 0.342313 4.2:+93720602 MS.gene052972:CDS
CTTATAATTGGAGCTCTATC+AGG 0.362802 4.2:+93721672 MS.gene052972:CDS
TTTATGAGCGGCGCCCTAGC+TGG 0.370801 4.2:+93719616 MS.gene052972:CDS
TATCGCAGGTAGTTTCGTTC+AGG 0.376359 4.2:+93720514 MS.gene052972:CDS
TAATTGCAGCGCCCAAATTA+GGG 0.384769 4.2:-93721485 None:intergenic
GACAATGCTGCTGCCATGTT+TGG 0.394490 4.2:-93722278 None:intergenic
TGAAGGGTCTTTACAGAGGT+TGG 0.398624 4.2:+93722324 MS.gene052972:CDS
ACTATAAGGAAATACCCTTC+TGG 0.401410 4.2:-93722427 None:intergenic
ATTAGAAATATTTATAAAGA+TGG 0.401453 4.2:+93721504 MS.gene052972:CDS
TGGCATCACTGCAAGAGAAA+TGG 0.402783 4.2:+93720651 MS.gene052972:CDS
TACATTTGAATGGACAAAAC+GGG 0.404800 4.2:+93720625 MS.gene052972:CDS
GCCGTGGCTGGGGCAGCTGC+AGG 0.409924 4.2:+93720749 MS.gene052972:CDS
TTGAGTTTGGTACATTTGAA+TGG 0.413507 4.2:+93720615 MS.gene052972:CDS
TTTCACCAACTGCCGTGGCT+GGG 0.413889 4.2:+93720738 MS.gene052972:CDS
GTCATACATGAAATAATAAC+AGG 0.422261 4.2:-93721589 None:intergenic
CGTTCAGGTTGTAGATCAGC+AGG 0.424658 4.2:+93720529 MS.gene052972:CDS
GCTGCCCCAGCCACGGCAGT+TGG 0.433783 4.2:-93720743 None:intergenic
CAAAAGAGCAATGGTGTGTT+TGG 0.435659 4.2:+93719406 None:intergenic
CCTGAGATATACCCTAATTT+GGG 0.436195 4.2:+93721474 MS.gene052972:CDS
ATGGAACCTATCTGCAACTT+AGG 0.439878 4.2:-93720689 None:intergenic
TACAATTAGCTTTCCATTGG+AGG 0.442855 4.2:+93722208 MS.gene052972:CDS
GGTTTATCACCTACTCTAGT+TGG 0.445522 4.2:+93721549 MS.gene052972:CDS
TTGCTCCTCTTGAAACCATC+AGG 0.447108 4.2:+93719659 MS.gene052972:CDS
TAAGAAGTCTTTAAATCGTC+CGG 0.453829 4.2:+93721644 MS.gene052972:CDS
TTCACCAACTGCCGTGGCTG+GGG 0.454352 4.2:+93720739 MS.gene052972:CDS
AAGGGTCTTTACAGAGGTTG+GGG 0.458582 4.2:+93722326 MS.gene052972:CDS
GGCATCACTGCAAGAGAAAT+GGG 0.459269 4.2:+93720652 MS.gene052972:CDS
TGAAGCATGGAAAGACATAC+TGG 0.469349 4.2:+93722400 MS.gene052972:CDS
AATGCTGCTGCCATGTTTGG+TGG 0.471036 4.2:-93722275 None:intergenic
AAATAATAACAGGTACTGTA+TGG 0.474057 4.2:-93721579 None:intergenic
GAAGAATATCAACATCTTTG+AGG 0.478085 4.2:-93719444 None:intergenic
AGATACCTTCAAAACTTCTA+GGG 0.482964 4.2:-93720798 None:intergenic
AGCAGGGATGGCAAGGATTG+TGG 0.485061 4.2:+93720546 MS.gene052972:CDS
GCAGGGATGGCAAGGATTGT+GGG 0.490569 4.2:+93720547 MS.gene052972:CDS
TCGGAAGTTATTCGAGAAGA+AGG 0.493790 4.2:+93722299 MS.gene052972:CDS
TTCATCATGCAGGACAAGAA+TGG 0.493874 4.2:+93720469 MS.gene052972:intron
ATTTATAAAGATGGTGGTAT+CGG 0.495173 4.2:+93721513 MS.gene052972:CDS
ACAAGAATGGTAGTTGGTGT+TGG 0.501019 4.2:+93720482 MS.gene052972:CDS
GAATCTCCTAAGTTGCAGAT+AGG 0.503313 4.2:+93720683 MS.gene052972:CDS
CAATGGAAAGCTAATTGTAC+TGG 0.505502 4.2:-93722204 None:intergenic
TTAAAGGTAATGCCATCCTC+TGG 0.506130 4.2:+93722359 MS.gene052972:CDS
GTACATTTGAATGGACAAAA+CGG 0.506453 4.2:+93720624 MS.gene052972:CDS
CAAGAATGGTAGTTGGTGTT+GGG 0.507620 4.2:+93720483 MS.gene052972:CDS
TTCAAATGTACCAAACTCAA+TGG 0.510520 4.2:-93720612 None:intergenic
CTTTAGTCATAGCACCAGCT+AGG 0.513529 4.2:-93719630 None:intergenic
TCCTGCAGCTGCCCCAGCCA+CGG 0.515973 4.2:-93720750 None:intergenic
AGAAATATTTATAAAGATGG+TGG 0.518327 4.2:+93721507 MS.gene052972:CDS
CGCTTTCTAGCTACCTCCAA+TGG 0.519539 4.2:-93722221 None:intergenic
AGTTGAAATCGAAAAGCGTT+GGG 0.531400 4.2:-93719466 None:intergenic
GCTCCAATTATAAGCATCTC+CGG 0.531439 4.2:-93721663 None:intergenic
CCCAAATTAGGGTATATCTC+AGG 0.532002 4.2:-93721474 None:intergenic
CCATGCTTCATAAAACATCC+AGG 0.533125 4.2:-93722387 None:intergenic
AGCTAGAAAGCGTCTGATGG+TGG 0.543913 4.2:+93722232 MS.gene052972:CDS
CAGTACAATTAGCTTTCCAT+TGG 0.546144 4.2:+93722205 MS.gene052972:CDS
ATGCTGCTGCCATGTTTGGT+GGG 0.550249 4.2:-93722274 None:intergenic
AAACATGGCAGCAGCATTGT+CGG 0.551336 4.2:+93722280 MS.gene052972:CDS
GAGAGTAGACCACCTGTGCT+TGG 0.551350 4.2:-93719495 None:intergenic
TTTAGTCATAGCACCAGCTA+GGG 0.554550 4.2:-93719629 None:intergenic
AGACATACTGGTTGTCCAGA+AGG 0.558329 4.2:+93722412 MS.gene052972:CDS
TCAACTTCCTCACCAAGCAC+AGG 0.561063 4.2:+93719483 MS.gene052972:CDS
AGGTAAGTGCCCACCAAACA+TGG 0.561890 4.2:+93722265 MS.gene052972:CDS
TGCCATCCTCTGGAATCACC+TGG 0.566309 4.2:+93722369 MS.gene052972:CDS
TTGGATTTCACCAACTGCCG+TGG 0.569562 4.2:+93720733 MS.gene052972:CDS
TATTCGAGAAGAAGGTCTGA+AGG 0.569713 4.2:+93722307 MS.gene052972:CDS
CCTTCAAAACTTCTAGGGGA+TGG 0.570273 4.2:-93720793 None:intergenic
GGATGGCAAGGATTGTGGGC+TGG 0.572479 4.2:+93720551 MS.gene052972:CDS
TGCAGGACAAGAATGGTAGT+TGG 0.573463 4.2:+93720476 MS.gene052972:intron
GACATACTGGTTGTCCAGAA+GGG 0.578877 4.2:+93722413 MS.gene052972:CDS
GCTAGAAAGCGTCTGATGGT+GGG 0.582168 4.2:+93722233 MS.gene052972:CDS
AAGTTGAAATCGAAAAGCGT+TGG 0.582771 4.2:-93719467 None:intergenic
ATCCAGGTGATTCCAGAGGA+TGG 0.584233 4.2:-93722371 None:intergenic
GTAGATCAGCAGGGATGGCA+AGG 0.584481 4.2:+93720539 MS.gene052972:CDS
AGGTTGTAGATCAGCAGGGA+TGG 0.590078 4.2:+93720534 MS.gene052972:CDS
GGAAGCATGCCAACTAGAGT+AGG 0.599614 4.2:-93721558 None:intergenic
CCAAACTCAATGGCTTGTGT+TGG 0.604946 4.2:-93720602 None:intergenic
ACTTCCTCACCAAGCACAGG+TGG 0.611864 4.2:+93719486 MS.gene052972:CDS
GGTAGCTAGAAAGCGTCTGA+TGG 0.619276 4.2:+93722229 MS.gene052972:CDS
CTGATGGTGGGAGCATTGCA+AGG 0.621069 4.2:+93722245 MS.gene052972:CDS
TAGACCACCTGTGCTTGGTG+AGG 0.642246 4.2:-93719490 None:intergenic
GATACCTTCAAAACTTCTAG+GGG 0.646053 4.2:-93720797 None:intergenic
GTTCAGGTTGTAGATCAGCA+GGG 0.653008 4.2:+93720530 MS.gene052972:CDS
GAATACCTGATGGTTTCAAG+AGG 0.653503 4.2:-93719664 None:intergenic
ACATTTGAATGGACAAAACG+GGG 0.656176 4.2:+93720626 MS.gene052972:CDS
ATTCGAGAAGAAGGTCTGAA+GGG 0.664756 4.2:+93722308 MS.gene052972:CDS
GTTGGGTCGAGAAATATCGC+AGG 0.665608 4.2:+93720500 MS.gene052972:CDS
GAAGTTCGTGAGTTTATGAG+CGG 0.674510 4.2:+93719604 MS.gene052972:CDS
AAACATCCAGGTGATTCCAG+AGG 0.681339 4.2:-93722375 None:intergenic
GGTCTGAAGGGTCTTTACAG+AGG 0.690226 4.2:+93722320 MS.gene052972:CDS
CATTTGAATGGACAAAACGG+GGG 0.732483 4.2:+93720627 MS.gene052972:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAATATTTATAAAGA+TGG + chr4.2:93721504-93721523 MS.gene052972:CDS 10.0%
!!! TGATAGATTTTTATATATAA+AGG - chr4.2:93719755-93719774 None:intergenic 10.0%
!! AAATAATTAATGACAGATAA+GGG + chr4.2:93721203-93721222 MS.gene052972:intron 15.0%
!! ATTTATATAGTGAAACAATT+AGG + chr4.2:93721091-93721110 MS.gene052972:intron 15.0%
!! TAAATTGTATAAATTGTCTT+TGG + chr4.2:93720865-93720884 MS.gene052972:intron 15.0%
!!! CTTGACAATTTTTTTTTAAT+CGG - chr4.2:93721954-93721973 None:intergenic 15.0%
!! AAATGATTAATGAGAGATAA+GGG + chr4.2:93721229-93721248 MS.gene052972:intron 20.0%
!! AATGATGTAAAATCTAAGTA+AGG + chr4.2:93720377-93720396 MS.gene052972:intron 20.0%
!! ACTTAAAACGACATTTATTA+AGG + chr4.2:93721272-93721291 MS.gene052972:intron 20.0%
!! AGAAATATTTATAAAGATGG+TGG + chr4.2:93721507-93721526 MS.gene052972:CDS 20.0%
!! ATATGTCATTAACTTTACTT+CGG + chr4.2:93721121-93721140 MS.gene052972:intron 20.0%
!! CAAATAATTAATGACAGATA+AGG + chr4.2:93721202-93721221 MS.gene052972:intron 20.0%
!! CCGTTGAAAAATAATAAAAA+CGG - chr4.2:93720934-93720953 None:intergenic 20.0%
!! CGATTAAAAAAAAATTGTCA+AGG + chr4.2:93721952-93721971 MS.gene052972:intron 20.0%
!! GATAATAAATACAAAAGTTG+TGG - chr4.2:93720190-93720209 None:intergenic 20.0%
!!! CCGTTTTTATTATTTTTCAA+CGG + chr4.2:93720931-93720950 MS.gene052972:intron 20.0%
!!! TTTTTAATCCTAATTCTCTT+TGG + chr4.2:93721419-93721438 MS.gene052972:intron 20.0%
! AAAAAATTGTCAAGGTGTAT+TGG + chr4.2:93721960-93721979 MS.gene052972:intron 25.0%
! AAACGACATTTATTAAGGAA+CGG + chr4.2:93721277-93721296 MS.gene052972:intron 25.0%
! AAATATTTCATGCCATCATA+TGG - chr4.2:93721782-93721801 None:intergenic 25.0%
! AAATTGAATAGAATACCTGA+TGG - chr4.2:93719677-93719696 None:intergenic 25.0%
! ACATTATTATTTCATCATGC+AGG + chr4.2:93720459-93720478 MS.gene052972:intron 25.0%
! ACTGAATGCAATTATGTAAT+TGG + chr4.2:93720343-93720362 MS.gene052972:intron 25.0%
! ATATGCATAAAGAGAAACTT+TGG - chr4.2:93722051-93722070 None:intergenic 25.0%
! ATCATGTACATTATTGCAAT+AGG + chr4.2:93719775-93719794 MS.gene052972:intron 25.0%
! CATAGATATGAAGCTTAAAA+AGG - chr4.2:93722095-93722114 None:intergenic 25.0%
! GAAATGATTAATGAGAGATA+AGG + chr4.2:93721228-93721247 MS.gene052972:intron 25.0%
! GTCATACATGAAATAATAAC+AGG - chr4.2:93721592-93721611 None:intergenic 25.0%
! TAAAGACAAGCTCAAATTAA+TGG - chr4.2:93720711-93720730 None:intergenic 25.0%
! TAACAAATCCAAAGAGAATT+AGG - chr4.2:93721430-93721449 None:intergenic 25.0%
! TTAATCGTATATCTGATGAA+CGG + chr4.2:93721985-93722004 MS.gene052972:intron 25.0%
!! AAATAATAACAGGTACTGTA+TGG - chr4.2:93721582-93721601 None:intergenic 25.0%
!! ATTTATAAAGATGGTGGTAT+CGG + chr4.2:93721513-93721532 MS.gene052972:CDS 25.0%
!! GTTAACATTCCTTTTTCTTT+AGG - chr4.2:93721052-93721071 None:intergenic 25.0%
!!! AAGACTTCTTATTTTTTGTC+AGG - chr4.2:93721635-93721654 None:intergenic 25.0%
!!! CTTGGTCATTATTTTGTTTT+TGG - chr4.2:93721357-93721376 None:intergenic 25.0%
!!! TACAAAGTATTGTCAAATAG+TGG + chr4.2:93720066-93720085 MS.gene052972:intron 25.0%
!!! TGTCGTTTTAAGTATTTATG+TGG - chr4.2:93721265-93721284 None:intergenic 25.0%
!!! TTATTTTTCAACGGTTATCA+AGG + chr4.2:93720940-93720959 MS.gene052972:intron 25.0%
!!! TTGTTTTTGGTATGATGTTT+TGG - chr4.2:93721344-93721363 None:intergenic 25.0%
AAAATACATTGCCAAGTACA+TGG - chr4.2:93722027-93722046 None:intergenic 30.0%
AATAAAAACGGCATACGTTA+AGG - chr4.2:93720922-93720941 None:intergenic 30.0%
ACATTATTGCAATAGGATAC+AGG + chr4.2:93719782-93719801 MS.gene052972:intron 30.0%
ACATTTATTAAGGAACGGAA+CGG + chr4.2:93721282-93721301 MS.gene052972:intron 30.0%
AGATACCTTCAAAACTTCTA+GGG - chr4.2:93720801-93720820 None:intergenic 30.0%
AGTTCAATATCTTTGTGTCT+TGG - chr4.2:93721375-93721394 None:intergenic 30.0%
ATTGTAACTCTGTAGCATAT+CGG + chr4.2:93720101-93720120 MS.gene052972:intron 30.0%
ATTTGAGCTTGTCTTTATCT+TGG + chr4.2:93720714-93720733 MS.gene052972:CDS 30.0%
CATTAAGGTCCTAAAGAAAA+AGG + chr4.2:93721040-93721059 MS.gene052972:intron 30.0%
GAAGAATATCAACATCTTTG+AGG - chr4.2:93719447-93719466 None:intergenic 30.0%
GCTTAAAAAGGACACATAAA+TGG - chr4.2:93722083-93722102 None:intergenic 30.0%
GTACATTTGAATGGACAAAA+CGG + chr4.2:93720624-93720643 MS.gene052972:CDS 30.0%
TAAGAAGTCTTTAAATCGTC+CGG + chr4.2:93721644-93721663 MS.gene052972:CDS 30.0%
TAATGAGGAGAGAGATTAAA+AGG - chr4.2:93721025-93721044 None:intergenic 30.0%
TACAAAAGTTGTGGTCAATA+AGG - chr4.2:93720181-93720200 None:intergenic 30.0%
TACATTTGAATGGACAAAAC+GGG + chr4.2:93720625-93720644 MS.gene052972:CDS 30.0%
TAGATACCTTCAAAACTTCT+AGG - chr4.2:93720802-93720821 None:intergenic 30.0%
TAGTTTCTATGAGACAAAAC+TGG - chr4.2:93719971-93719990 None:intergenic 30.0%
TGGGTTATAAAAACAGTAGT+AGG - chr4.2:93721851-93721870 None:intergenic 30.0%
TTCAAATGTACCAAACTCAA+TGG - chr4.2:93720615-93720634 None:intergenic 30.0%
TTGAGTTTGGTACATTTGAA+TGG + chr4.2:93720615-93720634 MS.gene052972:CDS 30.0%
TTGTACTAAATAGCATATCG+CGG - chr4.2:93720051-93720070 None:intergenic 30.0%
TTTAATCTCTCTCCTCATTA+AGG + chr4.2:93721025-93721044 MS.gene052972:intron 30.0%
! GGCAATAAAATAAGCTTTTG+AGG + chr4.2:93721142-93721161 MS.gene052972:intron 30.0%
! GTTTTGTCTCATAGAAACTA+TGG + chr4.2:93719971-93719990 MS.gene052972:intron 30.0%
! TTGTTCTGTGATTTGTGATT+TGG + chr4.2:93719894-93719913 MS.gene052972:intron 30.0%
!! GATTTATTTTCCACTATCCA+CGG + chr4.2:93720314-93720333 MS.gene052972:intron 30.0%
!! TAAAATAAGCTTTTGAGGAG+TGG + chr4.2:93721147-93721166 MS.gene052972:intron 30.0%
!!! CTACTGTTTTTATAACCCAA+AGG + chr4.2:93721852-93721871 MS.gene052972:intron 30.0%
!!! TTTTCTTTAGGACCTTAATG+AGG - chr4.2:93721040-93721059 None:intergenic 30.0%
AAAGTTGTGGTCAATAAGGA+AGG - chr4.2:93720177-93720196 None:intergenic 35.0%
AAGTTGTGGTCAATAAGGAA+GGG - chr4.2:93720176-93720195 None:intergenic 35.0%
ACATTTGAATGGACAAAACG+GGG + chr4.2:93720626-93720645 MS.gene052972:CDS 35.0%
AGAGATTAAAAGGATGAAGC+GGG - chr4.2:93721015-93721034 None:intergenic 35.0%
ATATGGTAGGAACCATATGA+TGG + chr4.2:93721767-93721786 MS.gene052972:intron 35.0%
ATGCTATAGCACTATAGCAT+AGG + chr4.2:93720277-93720296 MS.gene052972:intron 35.0%
CAATGGAAAGCTAATTGTAC+TGG - chr4.2:93722207-93722226 None:intergenic 35.0%
CACAGCGATACAAATTGATT+CGG + chr4.2:93722144-93722163 MS.gene052972:intron 35.0%
CCTGAGATATACCCTAATTT+GGG + chr4.2:93721474-93721493 MS.gene052972:CDS 35.0%
CTTATAATTGGAGCTCTATC+AGG + chr4.2:93721672-93721691 MS.gene052972:CDS 35.0%
GAATACCATCAATACTGGAA+GGG - chr4.2:93720226-93720245 None:intergenic 35.0%
GAGAGATTAAAAGGATGAAG+CGG - chr4.2:93721016-93721035 None:intergenic 35.0%
GATACCTTCAAAACTTCTAG+GGG - chr4.2:93720800-93720819 None:intergenic 35.0%
GTCATGAATACCATCAATAC+TGG - chr4.2:93720231-93720250 None:intergenic 35.0%
TATGGTTCCTACCATATGAT+CGG - chr4.2:93721764-93721783 None:intergenic 35.0%
TCCTGAGATATACCCTAATT+TGG + chr4.2:93721473-93721492 MS.gene052972:CDS 35.0%
TGAATACCATCAATACTGGA+AGG - chr4.2:93720227-93720246 None:intergenic 35.0%
TTCTATGAGACAAAACTGGT+AGG - chr4.2:93719967-93719986 None:intergenic 35.0%
! AAGTTGAAATCGAAAAGCGT+TGG - chr4.2:93719470-93719489 None:intergenic 35.0%
! ACAGCGATACAAATTGATTC+GGG + chr4.2:93722145-93722164 MS.gene052972:intron 35.0%
! TCATGACATGAGCATGTTTT+TGG + chr4.2:93720244-93720263 MS.gene052972:intron 35.0%
! TCTCTTTGTTTACAGCTCTT+TGG + chr4.2:93721713-93721732 MS.gene052972:intron 35.0%
!! AGTTGAAATCGAAAAGCGTT+GGG - chr4.2:93719469-93719488 None:intergenic 35.0%
!! CAGTACAATTAGCTTTCCAT+TGG + chr4.2:93722205-93722224 MS.gene052972:CDS 35.0%
!! CTCTTTGGATTTGTTATTCC+AGG + chr4.2:93721434-93721453 MS.gene052972:intron 35.0%
!! TACAATTAGCTTTCCATTGG+AGG + chr4.2:93722208-93722227 MS.gene052972:CDS 35.0%
!! TGGATTTGTTATTCCAGGAT+CGG + chr4.2:93721439-93721458 MS.gene052972:intron 35.0%
AAACGGCATACGTTAAGGAA+CGG - chr4.2:93720917-93720936 None:intergenic 40.0%
AAGTGGATGATGAGGGTAAT+AGG - chr4.2:93720990-93721009 None:intergenic 40.0%
AATAGCATATCGCGGAACAA+TGG - chr4.2:93720043-93720062 None:intergenic 40.0%
ACAATAACCCAAGAGCAGTT+TGG - chr4.2:93719715-93719734 None:intergenic 40.0%
ATAGACTATGTCTCTGCCTT+TGG - chr4.2:93721871-93721890 None:intergenic 40.0%
ATGGAACCTATCTGCAACTT+AGG - chr4.2:93720692-93720711 None:intergenic 40.0%
ATTCGAGAAGAAGGTCTGAA+GGG + chr4.2:93722308-93722327 MS.gene052972:CDS 40.0%
CAATAACCCAAGAGCAGTTT+GGG - chr4.2:93719714-93719733 None:intergenic 40.0%
CATTTGAATGGACAAAACGG+GGG + chr4.2:93720627-93720646 MS.gene052972:CDS 40.0%
CCATGCTTCATAAAACATCC+AGG - chr4.2:93722390-93722409 None:intergenic 40.0%
CCCAAATTAGGGTATATCTC+AGG - chr4.2:93721477-93721496 None:intergenic 40.0%
CGCTATTTGACAACATTGGA+TGG - chr4.2:93719839-93719858 None:intergenic 40.0%
GAAGTTCGTGAGTTTATGAG+CGG + chr4.2:93719604-93719623 MS.gene052972:CDS 40.0%
GAATACCTGATGGTTTCAAG+AGG - chr4.2:93719667-93719686 None:intergenic 40.0%
GAATCTCCTAAGTTGCAGAT+AGG + chr4.2:93720683-93720702 MS.gene052972:CDS 40.0%
GACTTATAGTTAACCGATCC+TGG - chr4.2:93721455-93721474 None:intergenic 40.0%
GCTCCAATTATAAGCATCTC+CGG - chr4.2:93721666-93721685 None:intergenic 40.0%
GGATAGTGATACCATGTACT+TGG + chr4.2:93722013-93722032 MS.gene052972:intron 40.0%
GGTTTATCACCTACTCTAGT+TGG + chr4.2:93721549-93721568 MS.gene052972:CDS 40.0%
TAATTGCAGCGCCCAAATTA+GGG - chr4.2:93721488-93721507 None:intergenic 40.0%
TACACGATCAACCGATCATA+TGG + chr4.2:93721750-93721769 MS.gene052972:intron 40.0%
TAGACTATGTCTCTGCCTTT+GGG - chr4.2:93721870-93721889 None:intergenic 40.0%
TATATCTGATGAACGGAGAC+AGG + chr4.2:93721992-93722011 MS.gene052972:intron 40.0%
TATGATCGGTTGATCGTGTA+CGG - chr4.2:93721750-93721769 None:intergenic 40.0%
TATTCGAGAAGAAGGTCTGA+AGG + chr4.2:93722307-93722326 MS.gene052972:CDS 40.0%
TCGGAAGTTATTCGAGAAGA+AGG + chr4.2:93722299-93722318 MS.gene052972:CDS 40.0%
TGAAGCATGGAAAGACATAC+TGG + chr4.2:93722400-93722419 MS.gene052972:CDS 40.0%
TTAAAGGTAATGCCATCCTC+TGG + chr4.2:93722359-93722378 MS.gene052972:CDS 40.0%
TTATTAAGGAACGGAACGGA+CGG + chr4.2:93721286-93721305 MS.gene052972:intron 40.0%
TTCATCATGCAGGACAAGAA+TGG + chr4.2:93720469-93720488 MS.gene052972:intron 40.0%
TTGAATTGTGTGTGTTGTGC+AGG + chr4.2:93719564-93719583 MS.gene052972:intron 40.0%
TTTAGTCATAGCACCAGCTA+GGG - chr4.2:93719632-93719651 None:intergenic 40.0%
! ACAAGAATGGTAGTTGGTGT+TGG + chr4.2:93720482-93720501 MS.gene052972:CDS 40.0%
! ATTGTACTGGCAGTAAAACC+TGG - chr4.2:93722194-93722213 None:intergenic 40.0%
! CAAGAATGGTAGTTGGTGTT+GGG + chr4.2:93720483-93720502 MS.gene052972:CDS 40.0%
! CCTGGATGTTTTATGAAGCA+TGG + chr4.2:93722387-93722406 MS.gene052972:CDS 40.0%
! GGGATCAGTGTTGTTAATTG+TGG - chr4.2:93720156-93720175 None:intergenic 40.0%
! TTGTACTGGCAGTAAAACCT+GGG - chr4.2:93722193-93722212 None:intergenic 40.0%
AAACATCCAGGTGATTCCAG+AGG - chr4.2:93722378-93722397 None:intergenic 45.0%
AAACATGGCAGCAGCATTGT+CGG + chr4.2:93722280-93722299 MS.gene052972:CDS 45.0%
AAAGGATGAAGCGGGAAAAG+TGG - chr4.2:93721007-93721026 None:intergenic 45.0%
AAGGGTCTTTACAGAGGTTG+GGG + chr4.2:93722326-93722345 MS.gene052972:CDS 45.0%
ATGATCGGTTGATCGTGTAC+GGG - chr4.2:93721749-93721768 None:intergenic 45.0%
CCAACACAAGCCATTGAGTT+TGG + chr4.2:93720602-93720621 MS.gene052972:CDS 45.0%
CGATCAACCGATCATATGGT+AGG + chr4.2:93721754-93721773 MS.gene052972:intron 45.0%
CGTCCGGAGATGCTTATAAT+TGG + chr4.2:93721660-93721679 MS.gene052972:CDS 45.0%
CTAATTGCAGCGCCCAAATT+AGG - chr4.2:93721489-93721508 None:intergenic 45.0%
CTTTAGTCATAGCACCAGCT+AGG - chr4.2:93719633-93719652 None:intergenic 45.0%
GAAGGGTCTTTACAGAGGTT+GGG + chr4.2:93722325-93722344 MS.gene052972:CDS 45.0%
GCGTCGCTATTTGACAACAT+TGG - chr4.2:93719843-93719862 None:intergenic 45.0%
GGCAGAGACATAGTCTATCA+AGG + chr4.2:93721873-93721892 MS.gene052972:intron 45.0%
GGCATCACTGCAAGAGAAAT+GGG + chr4.2:93720652-93720671 MS.gene052972:CDS 45.0%
GTCAAATAGTGGCTATTGCG+CGG + chr4.2:93720077-93720096 MS.gene052972:intron 45.0%
GTTGTCAAGACACGTTGCAA+TGG - chr4.2:93719943-93719962 None:intergenic 45.0%
TATCGCAGGTAGTTTCGTTC+AGG + chr4.2:93720514-93720533 MS.gene052972:CDS 45.0%
TGAAGGGTCTTTACAGAGGT+TGG + chr4.2:93722324-93722343 MS.gene052972:CDS 45.0%
TGCAGGACAAGAATGGTAGT+TGG + chr4.2:93720476-93720495 MS.gene052972:intron 45.0%
TGGCATCACTGCAAGAGAAA+TGG + chr4.2:93720651-93720670 MS.gene052972:CDS 45.0%
TGTATGCCCAAACTGCTCTT+GGG + chr4.2:93719705-93719724 MS.gene052972:intron 45.0%
TTGCATTCAGTTGTCAACCG+TGG - chr4.2:93720334-93720353 None:intergenic 45.0%
TTGCTCCTCTTGAAACCATC+AGG + chr4.2:93719659-93719678 MS.gene052972:CDS 45.0%
TTGGGGTGCAAGCTGTTTAA+AGG + chr4.2:93722343-93722362 MS.gene052972:CDS 45.0%
! AGACATACTGGTTGTCCAGA+AGG + chr4.2:93722412-93722431 MS.gene052972:CDS 45.0%
! CCAAACTCAATGGCTTGTGT+TGG - chr4.2:93720605-93720624 None:intergenic 45.0%
! CCTTCAAAACTTCTAGGGGA+TGG - chr4.2:93720796-93720815 None:intergenic 45.0%
! GACATACTGGTTGTCCAGAA+GGG + chr4.2:93722413-93722432 MS.gene052972:CDS 45.0%
! TGCTACCCTTCCAGTATTGA+TGG + chr4.2:93720218-93720237 MS.gene052972:intron 45.0%
!! CCATCCCCTAGAAGTTTTGA+AGG + chr4.2:93720793-93720812 MS.gene052972:CDS 45.0%
!! GTTCAGGTTGTAGATCAGCA+GGG + chr4.2:93720530-93720549 MS.gene052972:CDS 45.0%
!!! AGAATTGTTTTTGCGCACCC+AGG + chr4.2:93722173-93722192 MS.gene052972:intron 45.0%
AATGCTGCTGCCATGTTTGG+TGG - chr4.2:93722278-93722297 None:intergenic 50.0%
AGCGGGAAAAGTGGATGATG+AGG - chr4.2:93720998-93721017 None:intergenic 50.0%
AGGTAAGTGCCCACCAAACA+TGG + chr4.2:93722265-93722284 MS.gene052972:CDS 50.0%
AGGTTGTAGATCAGCAGGGA+TGG + chr4.2:93720534-93720553 MS.gene052972:CDS 50.0%
ATCCAGGTGATTCCAGAGGA+TGG - chr4.2:93722374-93722393 None:intergenic 50.0%
ATGCTGCTGCCATGTTTGGT+GGG - chr4.2:93722277-93722296 None:intergenic 50.0%
CAGTTGTCAACCGTGGATAG+TGG - chr4.2:93720327-93720346 None:intergenic 50.0%
CTGTATGCCCAAACTGCTCT+TGG + chr4.2:93719704-93719723 MS.gene052972:intron 50.0%
GACAATGCTGCTGCCATGTT+TGG - chr4.2:93722281-93722300 None:intergenic 50.0%
GCGGGAAAAGTGGATGATGA+GGG - chr4.2:93720997-93721016 None:intergenic 50.0%
GGCATACGTTAAGGAACGGA+GGG - chr4.2:93720913-93720932 None:intergenic 50.0%
GGTCTGAAGGGTCTTTACAG+AGG + chr4.2:93722320-93722339 MS.gene052972:CDS 50.0%
GTTGGGTCGAGAAATATCGC+AGG + chr4.2:93720500-93720519 MS.gene052972:CDS 50.0%
TCAACTTCCTCACCAAGCAC+AGG + chr4.2:93719483-93719502 MS.gene052972:CDS 50.0%
TGAATGGACAAAACGGGGGA+TGG + chr4.2:93720631-93720650 MS.gene052972:CDS 50.0%
TTGGATTTCACCAACTGCCG+TGG + chr4.2:93720733-93720752 MS.gene052972:CDS 50.0%
! GGAAGCATGCCAACTAGAGT+AGG - chr4.2:93721561-93721580 None:intergenic 50.0%
!! AGCTAGAAAGCGTCTGATGG+TGG + chr4.2:93722232-93722251 MS.gene052972:CDS 50.0%
!! CGCTTTCTAGCTACCTCCAA+TGG - chr4.2:93722224-93722243 None:intergenic 50.0%
!! CGTTCAGGTTGTAGATCAGC+AGG + chr4.2:93720529-93720548 MS.gene052972:CDS 50.0%
!! GCTAGAAAGCGTCTGATGGT+GGG + chr4.2:93722233-93722252 MS.gene052972:CDS 50.0%
!! GGTAGCTAGAAAGCGTCTGA+TGG + chr4.2:93722229-93722248 MS.gene052972:CDS 50.0%
!!! GGTATCGGCGCTTTTTATGC+TGG + chr4.2:93721528-93721547 MS.gene052972:CDS 50.0%
ACTTCCTCACCAAGCACAGG+TGG + chr4.2:93719486-93719505 MS.gene052972:CDS 55.0%
AGCAGGGATGGCAAGGATTG+TGG + chr4.2:93720546-93720565 MS.gene052972:CDS 55.0%
ATTTCACCAACTGCCGTGGC+TGG + chr4.2:93720737-93720756 MS.gene052972:CDS 55.0%
CGGCATACGTTAAGGAACGG+AGG - chr4.2:93720914-93720933 None:intergenic 55.0%
GAGAGTAGACCACCTGTGCT+TGG - chr4.2:93719498-93719517 None:intergenic 55.0%
GCAGGGATGGCAAGGATTGT+GGG + chr4.2:93720547-93720566 MS.gene052972:CDS 55.0%
GTAGATCAGCAGGGATGGCA+AGG + chr4.2:93720539-93720558 MS.gene052972:CDS 55.0%
TTTCACCAACTGCCGTGGCT+GGG + chr4.2:93720738-93720757 MS.gene052972:CDS 55.0%
! TAGACCACCTGTGCTTGGTG+AGG - chr4.2:93719493-93719512 None:intergenic 55.0%
!! CTGATGGTGGGAGCATTGCA+AGG + chr4.2:93722245-93722264 MS.gene052972:CDS 55.0%
!! TGCCATCCTCTGGAATCACC+TGG + chr4.2:93722369-93722388 MS.gene052972:CDS 55.0%
GGATGGCAAGGATTGTGGGC+TGG + chr4.2:93720551-93720570 MS.gene052972:CDS 60.0%
TTCACCAACTGCCGTGGCTG+GGG + chr4.2:93720739-93720758 MS.gene052972:CDS 60.0%
TTTATGAGCGGCGCCCTAGC+TGG + chr4.2:93719616-93719635 MS.gene052972:CDS 60.0%
TCCTGCAGCTGCCCCAGCCA+CGG - chr4.2:93720753-93720772 None:intergenic 70.0%
GCTGCCCCAGCCACGGCAGT+TGG - chr4.2:93720746-93720765 None:intergenic 75.0%
! GCCGTGGCTGGGGCAGCTGC+AGG + chr4.2:93720749-93720768 MS.gene052972:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 93719416 93722448 93719416 ID=MS.gene052972
chr4.2 mRNA 93719416 93722448 93719416 ID=MS.gene052972.t1;Parent=MS.gene052972
chr4.2 exon 93719416 93719538 93719416 ID=MS.gene052972.t1.exon1;Parent=MS.gene052972.t1
chr4.2 CDS 93719416 93719538 93719416 ID=cds.MS.gene052972.t1;Parent=MS.gene052972.t1
chr4.2 exon 93719586 93719680 93719586 ID=MS.gene052972.t1.exon2;Parent=MS.gene052972.t1
chr4.2 CDS 93719586 93719680 93719586 ID=cds.MS.gene052972.t1;Parent=MS.gene052972.t1
chr4.2 exon 93720481 93720814 93720481 ID=MS.gene052972.t1.exon3;Parent=MS.gene052972.t1
chr4.2 CDS 93720481 93720814 93720481 ID=cds.MS.gene052972.t1;Parent=MS.gene052972.t1
chr4.2 exon 93721456 93721693 93721456 ID=MS.gene052972.t1.exon4;Parent=MS.gene052972.t1
chr4.2 CDS 93721456 93721693 93721456 ID=cds.MS.gene052972.t1;Parent=MS.gene052972.t1
chr4.2 exon 93722195 93722448 93722195 ID=MS.gene052972.t1.exon5;Parent=MS.gene052972.t1
chr4.2 CDS 93722195 93722448 93722195 ID=cds.MS.gene052972.t1;Parent=MS.gene052972.t1
Gene Sequence

>MS.gene052972

ATGGTGTGTTTGGTGATGTATACGCTATCCTCAAAGATGTTGATATTCTTCCCAACGCTTTTCGATTTCAACTTCCTCACCAAGCACAGGTGGTCTACTCTCTTTTATTATTCAATTTCATTCGTAATAATTCATAAGAATAATTGAATTGAATTGTGTGTGTTGTGCAGGATTTTTTAGATAAGAGAGAAGTTCGTGAGTTTATGAGCGGCGCCCTAGCTGGTGCTATGACTAAAGCTATTCTTGCTCCTCTTGAAACCATCAGGTATTCTATTCAATTTAACACTTCTGTATGCCCAAACTGCTCTTGGGTTATTGTGTTTTCTAGTTGATCTTCCTTTATATATAAAAATCTATCAATCATGTACATTATTGCAATAGGATACAGGTATTAATCATGTACATTTATTTATACATAAGCCATCCAATGTTGTCAAATAGCGACGCTATAGAGTAGCGCAATTTTCAAAAACAGCTATTGTTCTGTGATTTGTGATTTGGTACAAAGTATTCTCAAATAGCGACCATTGCAACGTGTCTTGACAACTCCTACCAGTTTTGTCTCATAGAAACTATGGTCTAGCTATAGCACTATTACATAGCAGAATTTGAACAAGTAGCTAGCCATTGTTCCGCGATATGCTATTTAGTACAAAGTATTGTCAAATAGTGGCTATTGCGCGGTATTGTAACTCTGTAGCATATCGGAGTTTGAACAAAGTGCAATTTTTCGCTATCCACAATTAACAACACTGATCCCTTCCTTATTGACCACAACTTTTGTATTTATTATCACTTTCATTGCTACCCTTCCAGTATTGATGGTATTCATGACATGAGCATGTTTTTGGATCTCTTTTTATGCTATAGCACTATAGCATAGGATAATTTGAACAAAGATTTATTTTCCACTATCCACGGTTGACAACTGAATGCAATTATGTAATTGGATAAAGATACAAATGATGTAAAATCTAAGTAAGGCTTCAATTTTACATTCAAACAAAGTTGCTAACTAGCTGTATGCATTAGTGAAATGTTTTACATTATTATTTCATCATGCAGGACAAGAATGGTAGTTGGTGTTGGGTCGAGAAATATCGCAGGTAGTTTCGTTCAGGTTGTAGATCAGCAGGGATGGCAAGGATTGTGGGCTGGAAACATGATCAATATGATTCGTATAGTTCCAACACAAGCCATTGAGTTTGGTACATTTGAATGGACAAAACGGGGGATGGCATCACTGCAAGAGAAATGGGAACAGAATGAATCTCCTAAGTTGCAGATAGGTTCCATTAATTTGAGCTTGTCTTTATCTTGGATTTCACCAACTGCCGTGGCTGGGGCAGCTGCAGGAATTGCTAGCACGCTTGCATGCCATCCCCTAGAAGTTTTGAAGGTATCTATCTCATTTGAATGTTTAAGATAACGAATTAAAAATGCAATAAATAAATTGTATAAATTGTCTTTGGACGTCAATCAATATCATATACTCCCTCCGTTCCTTAACGTATGCCGTTTTTATTATTTTTCAACGGTTATCAAGGATGAGATATTCTAATAAAATTGTTCCTATTACCCTCATCATCCACTTTTCCCGCTTCATCCTTTTAATCTCTCTCCTCATTAAGGTCCTAAAGAAAAAGGAATGTTAACAACAAAATATGCTACACTAATTTATATAGTGAAACAATTAGGCATCAACATATGTCATTAACTTTACTTCGGCAATAAAATAAGCTTTTGAGGAGTGGATGTATGATAATAAGTTTCTCTTTAAACTTTTCAAATAATTAATGACAGATAAGGGAAGAAATGATTAATGAGAGATAAGGGTAAAAAGTAACCACATAAATACTTAAAACGACATTTATTAAGGAACGGAACGGACGGAGTACTCTTATGTATTGTTGAGTTAATAATGACCAAAACATCATACCAAAAACAAAATAATGACCAAGACACAAAGATATTGAACTTAGCTTTCTTCTCTTTTGCTCTTGTTTTTAATCCTAATTCTCTTTGGATTTGTTATTCCAGGATCGGTTAACTATAAGTCCTGAGATATACCCTAATTTGGGCGCTGCAATTAGAAATATTTATAAAGATGGTGGTATCGGCGCTTTTTATGCTGGTTTATCACCTACTCTAGTTGGCATGCTTCCATACAGTACCTGTTATTATTTCATGTATGACACAATAAAGAAATCTTACTGCCTGACAAAAAATAAGAAGTCTTTAAATCGTCCGGAGATGCTTATAATTGGAGCTCTATCAGGTGAGACATTCTCGATGTTTCTCTTTGTTTACAGCTCTTTGGTTTGCGCTGTCCCGTACACGATCAACCGATCATATGGTAGGAACCATATGATGGCATGAAATATTTATATTTATGAAAATTTTTGCTAGCAGCTGTTTGCTTTGTCTCGTCTCCTACTACTGTTTTTATAACCCAAAGGCAGAGACATAGTCTATCAAGGTGTTTGTTGCTAGCTTTTGCGCGTCTTGTGCAGACTTCGCTCTTAATAAAATTTGCCGATTAAAAAAAAATTGTCAAGGTGTATTGGTTTTAATCGTATATCTGATGAACGGAGACAGGATAGTGATACCATGTACTTGGCAATGTATTTTGCCAAAGTTTCTCTTTATGCATATTTTTCTTTGCCATTTATGTGTCCTTTTTAAGCTTCATATCTATGCAATGCGACACGTGAACTAAACTTTTGTACACAGCGATACAAATTGATTCGGGCTAACAGAATTGTTTTTGCGCACCCAGGTTTTACTGCCAGTACAATTAGCTTTCCATTGGAGGTAGCTAGAAAGCGTCTGATGGTGGGAGCATTGCAAGGTAAGTGCCCACCAAACATGGCAGCAGCATTGTCGGAAGTTATTCGAGAAGAAGGTCTGAAGGGTCTTTACAGAGGTTGGGGTGCAAGCTGTTTAAAGGTAATGCCATCCTCTGGAATCACCTGGATGTTTTATGAAGCATGGAAAGACATACTGGTTGTCCAGAAGGGTATTTCCTTATAG
Protein sequence

>MS.gene052972.t1

MVCLVMYTLSSKMLIFFPTLFDFNFLTKHRWSTLFYYSISFDFLDKREVREFMSGALAGAMTKAILAPLETIRTRMVVGVGSRNIAGSFVQVVDQQGWQGLWAGNMINMIRIVPTQAIEFGTFEWTKRGMASLQEKWEQNESPKLQIGSINLSLSLSWISPTAVAGAAAGIASTLACHPLEVLKDRLTISPEIYPNLGAAIRNIYKDGGIGAFYAGLSPTLVGMLPYSTCYYFMYDTIKKSYCLTKNKKSLNRPEMLIIGALSGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALSEVIREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILVVQKGISL