Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071833.t1 | XP_024632099.1 | 90.8 | 240 | 22 | 0 | 1 | 240 | 1 | 240 | 4.60E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071833.t1 | Q2V6J9 | 31.8 | 242 | 152 | 4 | 10 | 245 | 11 | 245 | 6.1e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071833.t1 | D2D583 | 84.6 | 240 | 37 | 0 | 1 | 240 | 1 | 240 | 9.1e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene071833 | 0.821162 | 4.68E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene071833 | 0.806648 | 7.43E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene071833 | 0.825628 | 4.23E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene071833 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene071833 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene050520 | MS.gene071833 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene053018 | MS.gene071833 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene071833 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene053436 | MS.gene071833 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene071833 | 0.808349 | 3.24E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene071833 | 0.835713 | 1.43E-56 | -1.69E-46 |
| MS.gene054196 | MS.gene071833 | 0.813505 | 2.47E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene071833 | 0.814513 | 1.48E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene071833 | 0.800528 | 1.38E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene071833 | 0.801832 | 7.47E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene071833 | 0.80465 | 1.95E-49 | -1.69E-46 |
| MS.gene058183 | MS.gene071833 | 0.99783 | 4.22E-250 | -1.69E-46 |
| MS.gene059034 | MS.gene071833 | 0.97709 | 4.32E-143 | -1.69E-46 |
| MS.gene059367 | MS.gene071833 | 0.82304 | 1.72E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene071833 | 0.882475 | 1.01E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071833.t1 | MTR_2g034990 | 83.402 | 241 | 40 | 0 | 1 | 241 | 1 | 241 | 5.02e-149 | 426 |
| MS.gene071833.t1 | MTR_2g035020 | 84.232 | 241 | 38 | 0 | 1 | 241 | 1 | 241 | 3.25e-144 | 414 |
| MS.gene071833.t1 | MTR_5g029800 | 68.800 | 250 | 74 | 1 | 1 | 250 | 1 | 246 | 1.82e-120 | 353 |
| MS.gene071833.t1 | MTR_7g012120 | 70.954 | 241 | 68 | 1 | 1 | 241 | 6 | 244 | 1.45e-117 | 346 |
| MS.gene071833.t1 | MTR_4g117960 | 61.290 | 279 | 94 | 3 | 1 | 267 | 1 | 277 | 3.27e-114 | 338 |
| MS.gene071833.t1 | MTR_5g067170 | 67.611 | 247 | 76 | 2 | 1 | 246 | 1 | 244 | 4.26e-114 | 337 |
| MS.gene071833.t1 | MTR_4g117980 | 62.241 | 241 | 91 | 0 | 1 | 241 | 1 | 241 | 2.19e-105 | 315 |
| MS.gene071833.t1 | MTR_6g035185 | 63.485 | 241 | 88 | 0 | 1 | 241 | 1 | 241 | 9.85e-104 | 311 |
| MS.gene071833.t1 | MTR_6g035265 | 60.996 | 241 | 85 | 3 | 1 | 241 | 1 | 232 | 3.63e-99 | 299 |
| MS.gene071833.t1 | MTR_8g032950 | 61.667 | 240 | 89 | 1 | 2 | 241 | 3 | 239 | 3.42e-94 | 286 |
| MS.gene071833.t1 | MTR_4g117890 | 47.872 | 282 | 123 | 4 | 7 | 278 | 9 | 276 | 8.18e-84 | 259 |
| MS.gene071833.t1 | MTR_0536s0020 | 52.766 | 235 | 101 | 2 | 7 | 241 | 14 | 238 | 1.09e-83 | 259 |
| MS.gene071833.t1 | MTR_0536s0010 | 50.424 | 236 | 105 | 2 | 6 | 241 | 16 | 239 | 2.38e-77 | 243 |
| MS.gene071833.t1 | MTR_4g117950 | 50.424 | 236 | 106 | 2 | 6 | 241 | 1 | 225 | 2.96e-77 | 242 |
| MS.gene071833.t1 | MTR_4g118000 | 51.064 | 235 | 102 | 2 | 7 | 241 | 8 | 229 | 4.76e-77 | 242 |
| MS.gene071833.t1 | MTR_2g035040 | 89.516 | 124 | 13 | 0 | 118 | 241 | 23 | 146 | 6.78e-77 | 239 |
| MS.gene071833.t1 | MTR_4g117970 | 61.850 | 173 | 62 | 1 | 78 | 250 | 53 | 221 | 4.62e-71 | 225 |
| MS.gene071833.t1 | MTR_2g035050 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 5.01e-65 | 200 |
| MS.gene071833.t1 | MTR_4g031800 | 39.662 | 237 | 133 | 4 | 8 | 241 | 6 | 235 | 3.30e-55 | 185 |
| MS.gene071833.t1 | MTR_0536s0030 | 46.774 | 186 | 89 | 2 | 36 | 221 | 5 | 180 | 1.83e-52 | 175 |
| MS.gene071833.t1 | MTR_4g485630 | 34.167 | 240 | 143 | 5 | 10 | 241 | 8 | 240 | 1.44e-39 | 144 |
| MS.gene071833.t1 | MTR_5g016660 | 32.780 | 241 | 149 | 4 | 10 | 241 | 9 | 245 | 4.89e-38 | 140 |
| MS.gene071833.t1 | MTR_7g070780 | 34.363 | 259 | 139 | 8 | 1 | 241 | 1 | 246 | 3.35e-37 | 137 |
| MS.gene071833.t1 | MTR_7g117405 | 35.246 | 244 | 143 | 6 | 16 | 248 | 17 | 256 | 2.30e-36 | 135 |
| MS.gene071833.t1 | MTR_5g039900 | 31.950 | 241 | 151 | 4 | 10 | 241 | 12 | 248 | 4.19e-36 | 135 |
| MS.gene071833.t1 | MTR_7g070740 | 33.462 | 260 | 140 | 7 | 1 | 241 | 1 | 246 | 1.86e-35 | 133 |
| MS.gene071833.t1 | MTR_6g035295 | 33.333 | 243 | 147 | 5 | 10 | 241 | 11 | 249 | 6.21e-35 | 131 |
| MS.gene071833.t1 | MTR_8g066610 | 30.894 | 246 | 153 | 5 | 9 | 241 | 7 | 248 | 9.92e-35 | 131 |
| MS.gene071833.t1 | MTR_7g102450 | 35.897 | 234 | 120 | 8 | 16 | 238 | 16 | 230 | 1.11e-34 | 130 |
| MS.gene071833.t1 | MTR_7g070800 | 33.730 | 252 | 140 | 6 | 6 | 241 | 1 | 241 | 5.50e-34 | 129 |
| MS.gene071833.t1 | MTR_7g055710 | 33.071 | 254 | 143 | 7 | 1 | 238 | 1 | 243 | 6.76e-34 | 129 |
| MS.gene071833.t1 | MTR_7g070860 | 33.600 | 250 | 139 | 6 | 8 | 241 | 4 | 242 | 5.79e-33 | 126 |
| MS.gene071833.t1 | MTR_7g070930 | 31.837 | 245 | 146 | 5 | 10 | 241 | 13 | 249 | 2.17e-32 | 124 |
| MS.gene071833.t1 | MTR_7g070660 | 31.102 | 254 | 154 | 5 | 1 | 241 | 1 | 246 | 4.40e-32 | 124 |
| MS.gene071833.t1 | MTR_5g045970 | 31.873 | 251 | 135 | 9 | 10 | 238 | 15 | 251 | 4.43e-32 | 124 |
| MS.gene071833.t1 | MTR_5g045960 | 30.081 | 246 | 156 | 6 | 8 | 241 | 6 | 247 | 1.12e-31 | 122 |
| MS.gene071833.t1 | MTR_4g108250 | 31.439 | 264 | 143 | 7 | 1 | 241 | 1 | 249 | 5.85e-31 | 120 |
| MS.gene071833.t1 | MTR_7g071040 | 30.315 | 254 | 156 | 5 | 1 | 241 | 7 | 252 | 5.52e-30 | 118 |
| MS.gene071833.t1 | MTR_7g070910 | 31.076 | 251 | 158 | 6 | 1 | 241 | 1 | 246 | 5.93e-30 | 118 |
| MS.gene071833.t1 | MTR_7g070810 | 30.864 | 243 | 155 | 4 | 8 | 241 | 6 | 244 | 1.00e-29 | 117 |
| MS.gene071833.t1 | MTR_5g040030 | 30.081 | 246 | 154 | 7 | 8 | 241 | 11 | 250 | 2.07e-29 | 116 |
| MS.gene071833.t1 | MTR_7g070610 | 28.794 | 257 | 154 | 6 | 2 | 241 | 4 | 248 | 2.57e-29 | 116 |
| MS.gene071833.t1 | MTR_4g485620 | 28.631 | 241 | 155 | 5 | 23 | 250 | 1 | 237 | 3.75e-29 | 115 |
| MS.gene071833.t1 | MTR_7g070940 | 30.453 | 243 | 156 | 4 | 8 | 241 | 6 | 244 | 4.64e-29 | 115 |
| MS.gene071833.t1 | MTR_4g485590 | 32.099 | 243 | 124 | 5 | 12 | 243 | 10 | 222 | 2.31e-27 | 109 |
| MS.gene071833.t1 | MTR_7g071050 | 34.737 | 190 | 110 | 4 | 2 | 187 | 4 | 183 | 3.77e-27 | 109 |
| MS.gene071833.t1 | MTR_1g062380 | 30.165 | 242 | 147 | 7 | 12 | 238 | 17 | 251 | 6.38e-27 | 109 |
| MS.gene071833.t1 | MTR_7g070870 | 29.630 | 243 | 155 | 4 | 8 | 241 | 16 | 251 | 5.70e-26 | 106 |
| MS.gene071833.t1 | MTR_7g102490 | 29.839 | 248 | 151 | 8 | 11 | 241 | 7 | 248 | 5.72e-26 | 107 |
| MS.gene071833.t1 | MTR_1g040310 | 30.120 | 249 | 155 | 6 | 4 | 241 | 8 | 248 | 2.91e-25 | 105 |
| MS.gene071833.t1 | MTR_7g102550 | 27.642 | 246 | 161 | 7 | 14 | 247 | 12 | 252 | 3.69e-25 | 104 |
| MS.gene071833.t1 | MTR_7g102560 | 29.461 | 241 | 150 | 9 | 10 | 238 | 8 | 240 | 1.32e-24 | 102 |
| MS.gene071833.t1 | MTR_7g039570 | 32.240 | 183 | 114 | 5 | 10 | 187 | 13 | 190 | 3.40e-24 | 98.6 |
| MS.gene071833.t1 | MTR_7g102460 | 30.242 | 248 | 149 | 10 | 11 | 241 | 7 | 247 | 1.49e-23 | 100 |
| MS.gene071833.t1 | MTR_4g024020 | 29.630 | 243 | 153 | 8 | 11 | 238 | 7 | 246 | 4.07e-23 | 99.0 |
| MS.gene071833.t1 | MTR_7g470590 | 37.600 | 125 | 75 | 2 | 1 | 122 | 1 | 125 | 2.90e-21 | 87.0 |
| MS.gene071833.t1 | MTR_7g070570 | 37.600 | 125 | 75 | 2 | 1 | 122 | 1 | 125 | 2.90e-21 | 87.0 |
| MS.gene071833.t1 | MTR_7g102520 | 29.707 | 239 | 146 | 9 | 14 | 238 | 15 | 245 | 1.81e-20 | 91.3 |
| MS.gene071833.t1 | MTR_8g044140 | 28.436 | 211 | 137 | 5 | 40 | 241 | 6 | 211 | 5.00e-20 | 89.7 |
| MS.gene071833.t1 | MTR_4g485640 | 27.083 | 240 | 150 | 6 | 19 | 250 | 217 | 439 | 1.82e-16 | 79.7 |
| MS.gene071833.t1 | MTR_8g068330 | 32.394 | 142 | 85 | 5 | 7 | 144 | 4 | 138 | 2.99e-13 | 69.7 |
| MS.gene071833.t1 | MTR_7g067330 | 27.972 | 143 | 88 | 3 | 8 | 144 | 6 | 139 | 5.94e-11 | 62.8 |
| MS.gene071833.t1 | MTR_8g007565 | 23.868 | 243 | 167 | 6 | 7 | 237 | 3 | 239 | 6.56e-11 | 62.8 |
| MS.gene071833.t1 | MTR_8g007650 | 23.868 | 243 | 167 | 6 | 7 | 237 | 3 | 239 | 6.81e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071833.t1 | AT2G36770 | 33.600 | 250 | 148 | 6 | 5 | 241 | 8 | 252 | 7.20e-36 | 134 |
| MS.gene071833.t1 | AT2G36750 | 32.794 | 247 | 153 | 6 | 5 | 241 | 4 | 247 | 4.63e-35 | 132 |
| MS.gene071833.t1 | AT2G36780 | 33.333 | 243 | 148 | 6 | 10 | 241 | 13 | 252 | 5.10e-33 | 126 |
| MS.gene071833.t1 | AT4G34131 | 29.688 | 256 | 160 | 6 | 8 | 247 | 7 | 258 | 5.44e-33 | 126 |
| MS.gene071833.t1 | AT2G36790 | 31.837 | 245 | 151 | 6 | 9 | 241 | 11 | 251 | 1.72e-32 | 125 |
| MS.gene071833.t1 | AT2G36760 | 29.682 | 283 | 170 | 8 | 9 | 275 | 12 | 281 | 7.60e-31 | 120 |
| MS.gene071833.t1 | AT2G36800 | 30.612 | 245 | 155 | 5 | 9 | 241 | 10 | 251 | 1.13e-30 | 120 |
| MS.gene071833.t1 | AT3G53150 | 30.739 | 257 | 156 | 8 | 1 | 241 | 10 | 260 | 2.98e-30 | 119 |
| MS.gene071833.t1 | AT4G34135 | 28.125 | 256 | 164 | 7 | 8 | 247 | 8 | 259 | 9.05e-30 | 115 |
| MS.gene071833.t1 | AT4G34135 | 28.125 | 256 | 164 | 7 | 8 | 247 | 8 | 259 | 5.51e-29 | 115 |
| MS.gene071833.t1 | AT3G53160 | 30.389 | 283 | 168 | 10 | 9 | 275 | 6 | 275 | 5.64e-28 | 112 |
| MS.gene071833.t1 | AT4G34138 | 28.185 | 259 | 158 | 9 | 4 | 243 | 5 | 254 | 7.02e-27 | 109 |
| MS.gene071833.t1 | AT2G15480 | 25.882 | 255 | 169 | 7 | 5 | 243 | 4 | 254 | 1.98e-26 | 108 |
| MS.gene071833.t1 | AT2G15480 | 25.882 | 255 | 169 | 7 | 5 | 243 | 4 | 254 | 2.09e-26 | 108 |
| MS.gene071833.t1 | AT2G15490 | 28.226 | 248 | 158 | 7 | 12 | 243 | 8 | 251 | 2.46e-26 | 107 |
| MS.gene071833.t1 | AT2G15490 | 28.226 | 248 | 158 | 7 | 12 | 243 | 8 | 251 | 2.58e-26 | 107 |
| MS.gene071833.t1 | AT2G15490 | 31.746 | 189 | 116 | 5 | 12 | 190 | 8 | 193 | 2.56e-25 | 102 |
| MS.gene071833.t1 | AT5G14860 | 27.074 | 229 | 145 | 5 | 14 | 221 | 11 | 238 | 3.31e-15 | 75.9 |
| MS.gene071833.t1 | AT1G06000 | 31.073 | 177 | 111 | 5 | 12 | 181 | 11 | 183 | 5.43e-14 | 72.0 |
| MS.gene071833.t1 | AT1G73880 | 27.170 | 265 | 158 | 12 | 5 | 248 | 6 | 256 | 1.65e-13 | 70.5 |
| MS.gene071833.t1 | AT5G03490 | 27.311 | 238 | 161 | 7 | 5 | 235 | 13 | 245 | 3.60e-13 | 69.7 |
| MS.gene071833.t1 | AT1G10400 | 26.103 | 272 | 160 | 11 | 4 | 250 | 1 | 256 | 7.43e-12 | 65.9 |
| MS.gene071833.t1 | AT5G49690 | 28.814 | 177 | 118 | 4 | 7 | 182 | 6 | 175 | 2.33e-11 | 64.3 |
| MS.gene071833.t1 | AT2G22590 | 27.972 | 143 | 97 | 3 | 10 | 148 | 14 | 154 | 7.82e-11 | 62.8 |
Find 88 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATATGATGAGGAAAATT+TGG | 0.225535 | 2.2:-53857984 | None:intergenic |
| ATTCCGTTAAATGTGATGTT+AGG | 0.275456 | 2.2:-53857864 | None:intergenic |
| TTGTGTCGAGCATCGTTTCT+AGG | 0.310903 | 2.2:-53858043 | None:intergenic |
| TTACTTCATTCACTGCAAAT+AGG | 0.314795 | 2.2:+53859751 | MS.gene071833:CDS |
| TGTTAGGGATCTGAAACTTA+TGG | 0.318193 | 2.2:-53857848 | None:intergenic |
| TTCATTCCATTTCTAGCATC+TGG | 0.324858 | 2.2:+53857489 | MS.gene071833:CDS |
| AAACCACGGGTCACAAAGTT+TGG | 0.347740 | 2.2:+53858141 | MS.gene071833:CDS |
| ATACCCATGGGCTAATGATT+TGG | 0.367133 | 2.2:+53857824 | MS.gene071833:CDS |
| ATCCCTAACATCACATTTAA+CGG | 0.369994 | 2.2:+53857861 | MS.gene071833:CDS |
| TTCTCATATAAATTCTGATT+CGG | 0.385242 | 2.2:+53857941 | MS.gene071833:CDS |
| TGGACCCATTGAGGATTTCA+TGG | 0.385605 | 2.2:+53857764 | MS.gene071833:CDS |
| GGTCACAAAGTTTGGCATCT+TGG | 0.400304 | 2.2:+53858149 | MS.gene071833:CDS |
| ACGTTCATCGGCGGTGGGTC+AGG | 0.405662 | 2.2:+53859713 | MS.gene071833:CDS |
| GGATTGGACGTTGGAGGGAG+TGG | 0.414768 | 2.2:-53857580 | None:intergenic |
| AGGAATTCAATGATTAACTT+TGG | 0.416716 | 2.2:-53858023 | None:intergenic |
| CCTCTTTGCCGTCTCCCTCA+TGG | 0.425113 | 2.2:+53857890 | MS.gene071833:CDS |
| AACAACTTCAGTGAACTTGA+TGG | 0.430043 | 2.2:+53858092 | MS.gene071833:CDS |
| ATCAGGAAGGCCAACTTGTT+GGG | 0.435056 | 2.2:-53857667 | None:intergenic |
| AGAGAGATTTGGTAAGGGAT+TGG | 0.438721 | 2.2:-53857596 | None:intergenic |
| CGATGGATCTCTTGTTGTGT+TGG | 0.441156 | 2.2:+53859665 | MS.gene071833:CDS |
| GTTAGGGATCTGAAACTTAT+GGG | 0.441472 | 2.2:-53857847 | None:intergenic |
| GTTGAGACGTTCATCGGCGG+TGG | 0.448010 | 2.2:+53859707 | MS.gene071833:CDS |
| ATATGTCCAGATGCTAGAAA+TGG | 0.452356 | 2.2:-53857495 | None:intergenic |
| CATCAGGAAGGCCAACTTGT+TGG | 0.452771 | 2.2:-53857668 | None:intergenic |
| TTCCGTTAAATGTGATGTTA+GGG | 0.463451 | 2.2:-53857863 | None:intergenic |
| GGTAAGGGATTGGACGTTGG+AGG | 0.465839 | 2.2:-53857586 | None:intergenic |
| CCACCGACTCCACCACATCT+TGG | 0.478304 | 2.2:+53857712 | MS.gene071833:CDS |
| AGCGGCGGATGAGAGAGATT+TGG | 0.482822 | 2.2:-53857607 | None:intergenic |
| AATTCAATGATTAACTTTGG+CGG | 0.488317 | 2.2:-53858020 | None:intergenic |
| ATTCTCCATGAAATCCTCAA+TGG | 0.492298 | 2.2:-53857769 | None:intergenic |
| GGAATGAAGTAAACTTTCAA+TGG | 0.492596 | 2.2:-53857474 | None:intergenic |
| GTAAGGGATTGGACGTTGGA+GGG | 0.494818 | 2.2:-53857585 | None:intergenic |
| TTCTCCATGAAATCCTCAAT+GGG | 0.500037 | 2.2:-53857768 | None:intergenic |
| CGGATGAGAGAGATTTGGTA+AGG | 0.502074 | 2.2:-53857602 | None:intergenic |
| CCTCATCATATCACCTTGTG+TGG | 0.513929 | 2.2:+53857993 | MS.gene071833:CDS |
| GACTGTGACGTGTTGGCCAC+GGG | 0.523267 | 2.2:-53857553 | None:intergenic |
| GACACAGATTCAATGCCATC+AGG | 0.524089 | 2.2:-53857684 | None:intergenic |
| TTTGGTAAGGGATTGGACGT+TGG | 0.533399 | 2.2:-53857589 | None:intergenic |
| CTTCCAAGATGTGGTGGAGT+CGG | 0.541137 | 2.2:-53857715 | None:intergenic |
| CTCTGACGCTGCATACCCAT+GGG | 0.541240 | 2.2:+53857812 | MS.gene071833:CDS |
| AGATGTGGTGGAGTCGGTGG+TGG | 0.542144 | 2.2:-53857709 | None:intergenic |
| TCTCTGACGCTGCATACCCA+TGG | 0.545223 | 2.2:+53857811 | MS.gene071833:CDS |
| GCGTCAGAGATGATACAATC+TGG | 0.550239 | 2.2:-53857798 | None:intergenic |
| GCGAAGGAAGGAGGGAGCGG+CGG | 0.550435 | 2.2:-53857622 | None:intergenic |
| TGACTGTGACGTGTTGGCCA+CGG | 0.551280 | 2.2:-53857554 | None:intergenic |
| GAAGGCCAACTTGTTGGGAG+GGG | 0.552799 | 2.2:-53857662 | None:intergenic |
| GAGGGTCTCCATGAGGGAGA+CGG | 0.554233 | 2.2:-53857898 | None:intergenic |
| GTTGTCGTTGAGACGTTCAT+CGG | 0.554661 | 2.2:+53859701 | MS.gene071833:CDS |
| GTGTGAAAGCGAAGGAAGGA+GGG | 0.557229 | 2.2:-53857630 | None:intergenic |
| CGTGGCGCAATGCTCCTCCA+TGG | 0.558547 | 2.2:+53857744 | MS.gene071833:CDS |
| AAAGCGAAGGAAGGAGGGAG+CGG | 0.560781 | 2.2:-53857625 | None:intergenic |
| CAACAAGTTGGCCTTCCTGA+TGG | 0.562093 | 2.2:+53857669 | MS.gene071833:CDS |
| TGAAATCCTCAATGGGTCCA+TGG | 0.564035 | 2.2:-53857761 | None:intergenic |
| GGAAGGCCAACTTGTTGGGA+GGG | 0.567130 | 2.2:-53857663 | None:intergenic |
| GGCGGTGGGTCAGGACAACT+CGG | 0.567231 | 2.2:+53859722 | MS.gene071833:CDS |
| GCAATTATGTTTGCATCCCG+TGG | 0.572148 | 2.2:+53857537 | MS.gene071833:CDS |
| CCACACAAGGTGATATGATG+AGG | 0.573323 | 2.2:-53857993 | None:intergenic |
| GCTCCTCCATGGACCCATTG+AGG | 0.577302 | 2.2:+53857755 | MS.gene071833:CDS |
| AGTGTGAAAGCGAAGGAAGG+AGG | 0.578480 | 2.2:-53857631 | None:intergenic |
| ATAATTGCTATGTCAAGAAG+AGG | 0.578787 | 2.2:-53857522 | None:intergenic |
| GACAGTGTGAAAGCGAAGGA+AGG | 0.579335 | 2.2:-53857634 | None:intergenic |
| AGGAAAATTTGGAACGACAA+AGG | 0.584634 | 2.2:-53857973 | None:intergenic |
| TGGGCCAAATCATTAGCCCA+TGG | 0.584839 | 2.2:-53857828 | None:intergenic |
| AGGAAGGCCAACTTGTTGGG+AGG | 0.588353 | 2.2:-53857664 | None:intergenic |
| GACTTCCCCTCCCAACAAGT+TGG | 0.588648 | 2.2:+53857657 | MS.gene071833:CDS |
| CGTCTCAACGACAACATCAA+CGG | 0.591456 | 2.2:-53859693 | None:intergenic |
| TTGAGACGTTCATCGGCGGT+GGG | 0.596432 | 2.2:+53859708 | MS.gene071833:CDS |
| ATGCCAAACTTTGTGACCCG+TGG | 0.603889 | 2.2:-53858144 | None:intergenic |
| GGGCCAAATCATTAGCCCAT+GGG | 0.607549 | 2.2:-53857827 | None:intergenic |
| CATGGAGGAGCATTGCGCCA+CGG | 0.612634 | 2.2:-53857743 | None:intergenic |
| ACGGTGGATCTTCCAAGATG+TGG | 0.612832 | 2.2:-53857724 | None:intergenic |
| GGATGAGAGAGATTTGGTAA+GGG | 0.615398 | 2.2:-53857601 | None:intergenic |
| GTGGATCTTCCAAGATGTGG+TGG | 0.616198 | 2.2:-53857721 | None:intergenic |
| GTCGTTGAGACGTTCATCGG+CGG | 0.617528 | 2.2:+53859704 | MS.gene071833:CDS |
| CAGATTCAATGCCATCAGGA+AGG | 0.628953 | 2.2:-53857680 | None:intergenic |
| CCAAGATGTGGTGGAGTCGG+TGG | 0.631555 | 2.2:-53857712 | None:intergenic |
| ATATATTGTTCAGCAATGGA+AGG | 0.640847 | 2.2:+53857435 | None:intergenic |
| CAACACTACGAGAAAACCAC+GGG | 0.646166 | 2.2:+53858128 | MS.gene071833:CDS |
| TAATTGCTATGTCAAGAAGA+GGG | 0.646353 | 2.2:-53857521 | None:intergenic |
| TCAGAGATGATACAATCTGG+TGG | 0.654575 | 2.2:-53857795 | None:intergenic |
| TGGTGATGACTGTGACGTGT+TGG | 0.655109 | 2.2:-53857560 | None:intergenic |
| AGTCGACAGTGTGAAAGCGA+AGG | 0.660325 | 2.2:-53857638 | None:intergenic |
| CCATGAGGGAGACGGCAAAG+AGG | 0.671090 | 2.2:-53857890 | None:intergenic |
| GGAGGAGCATTGCGCCACGG+TGG | 0.675879 | 2.2:-53857740 | None:intergenic |
| GGTGGGTCAGGACAACTCGG+TGG | 0.707833 | 2.2:+53859725 | MS.gene071833:CDS |
| CCAACACTACGAGAAAACCA+CGG | 0.719836 | 2.2:+53858127 | MS.gene071833:CDS |
| AATCCTCAATGGGTCCATGG+AGG | 0.729822 | 2.2:-53857758 | None:intergenic |
| ACATCTTGGAAGATCCACCG+TGG | 0.815972 | 2.2:+53857726 | MS.gene071833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAATTTTTCAATTTTA+CGG | + | chr2.2:53859450-53859469 | MS.gene071833:intron | 10.0% |
| !! | AAAAAAAAAAACACAAAAAC+AGG | - | chr2.2:53859541-53859560 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr2.2:53859391-53859410 | MS.gene071833:intron | 15.0% |
| !! | ATGAATCAATAATCTTAACA+AGG | + | chr2.2:53859158-53859177 | MS.gene071833:intron | 20.0% |
| !! | CAAAATCCAAAAAACATAAA+AGG | - | chr2.2:53859036-53859055 | None:intergenic | 20.0% |
| !! | TTCTCATATAAATTCTGATT+CGG | + | chr2.2:53857941-53857960 | MS.gene071833:CDS | 20.0% |
| !!! | AAGTAAATTGTTTGTTTTGA+GGG | - | chr2.2:53857919-53857938 | None:intergenic | 20.0% |
| !!! | CTCATCTTATAATAATTTGT+TGG | + | chr2.2:53858853-53858872 | MS.gene071833:intron | 20.0% |
| !!! | TAAGTAAATTGTTTGTTTTG+AGG | - | chr2.2:53857920-53857939 | None:intergenic | 20.0% |
| ! | AACAAAATTGAATCAAACAG+TGG | - | chr2.2:53859199-53859218 | None:intergenic | 25.0% |
| ! | AATTCAATGATTAACTTTGG+CGG | - | chr2.2:53858023-53858042 | None:intergenic | 25.0% |
| ! | AGGAATTCAATGATTAACTT+TGG | - | chr2.2:53858026-53858045 | None:intergenic | 25.0% |
| ! | TAATAAACAGCTATATGAGA+TGG | + | chr2.2:53858322-53858341 | MS.gene071833:intron | 25.0% |
| !! | TCAGTATTGTACATATGTTT+TGG | + | chr2.2:53858281-53858300 | MS.gene071833:intron | 25.0% |
| !! | TTAAAATCTCGAGATTTTGT+CGG | + | chr2.2:53859513-53859532 | MS.gene071833:intron | 25.0% |
| !!! | AACCAAACTTGCTATATATA+GGG | - | chr2.2:53859584-53859603 | None:intergenic | 25.0% |
| !!! | ATTCAATTTTGTTGTTTACG+TGG | + | chr2.2:53859206-53859225 | MS.gene071833:intron | 25.0% |
| !!! | CTCGAGATTTTAAGTAAAAA+AGG | - | chr2.2:53859506-53859525 | None:intergenic | 25.0% |
| AAGCAACAATATAGCTACTA+TGG | + | chr2.2:53859094-53859113 | MS.gene071833:intron | 30.0% | |
| AATCAAACAGTGGAAGAATT+TGG | - | chr2.2:53859189-53859208 | None:intergenic | 30.0% | |
| ACTCCTTTGAATTAATCATG+CGG | - | chr2.2:53858917-53858936 | None:intergenic | 30.0% | |
| ATAATTGCTATGTCAAGAAG+AGG | - | chr2.2:53857525-53857544 | None:intergenic | 30.0% | |
| ATCCCTAACATCACATTTAA+CGG | + | chr2.2:53857861-53857880 | MS.gene071833:CDS | 30.0% | |
| ATTCCGTTAAATGTGATGTT+AGG | - | chr2.2:53857867-53857886 | None:intergenic | 30.0% | |
| GACGAAACAACAATGTTATT+AGG | - | chr2.2:53858965-53858984 | None:intergenic | 30.0% | |
| GATTTGAAGAGAGAAACATT+GGG | + | chr2.2:53858450-53858469 | MS.gene071833:intron | 30.0% | |
| GGAATGAAGTAAACTTTCAA+TGG | - | chr2.2:53857477-53857496 | None:intergenic | 30.0% | |
| GTGATATGATGAGGAAAATT+TGG | - | chr2.2:53857987-53858006 | None:intergenic | 30.0% | |
| TAATTGCTATGTCAAGAAGA+GGG | - | chr2.2:53857524-53857543 | None:intergenic | 30.0% | |
| TGATGAAGCTAGAAATATCA+GGG | + | chr2.2:53858778-53858797 | MS.gene071833:intron | 30.0% | |
| TTACTTCATTCACTGCAAAT+AGG | + | chr2.2:53859751-53859770 | MS.gene071833:CDS | 30.0% | |
| TTCCGTTAAATGTGATGTTA+GGG | - | chr2.2:53857866-53857885 | None:intergenic | 30.0% | |
| ! | AATTTTACGGTCATACGAAA+TGG | + | chr2.2:53859463-53859482 | MS.gene071833:intron | 30.0% |
| ! | GCGATTCCTTTTATGTTTTT+TGG | + | chr2.2:53859027-53859046 | MS.gene071833:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr2.2:53859417-53859436 | MS.gene071833:intron | 30.0% |
| !! | ACCAAACTTGCTATATATAG+GGG | - | chr2.2:53859583-53859602 | None:intergenic | 30.0% |
| !! | CAACCAAACTTGCTATATAT+AGG | - | chr2.2:53859585-53859604 | None:intergenic | 30.0% |
| AACAACTTCAGTGAACTTGA+TGG | + | chr2.2:53858092-53858111 | MS.gene071833:CDS | 35.0% | |
| AAGAAGGGTTTGATCATTAG+GGG | + | chr2.2:53858473-53858492 | MS.gene071833:intron | 35.0% | |
| AAGCCGCATGATTAATTCAA+AGG | + | chr2.2:53858911-53858930 | MS.gene071833:intron | 35.0% | |
| ATATGTCCAGATGCTAGAAA+TGG | - | chr2.2:53857498-53857517 | None:intergenic | 35.0% | |
| ATTCTCCATGAAATCCTCAA+TGG | - | chr2.2:53857772-53857791 | None:intergenic | 35.0% | |
| CCTTTCTGATTTCTCTTGAA+CGG | - | chr2.2:53858198-53858217 | None:intergenic | 35.0% | |
| CGAAATGGAAGATTCATGTA+AGG | + | chr2.2:53859478-53859497 | MS.gene071833:intron | 35.0% | |
| CGTTCAAGAGAAATCAGAAA+GGG | + | chr2.2:53858196-53858215 | MS.gene071833:intron | 35.0% | |
| CTTTCAGTTTCCAATGCAAT+TGG | - | chr2.2:53859364-53859383 | None:intergenic | 35.0% | |
| GAAGAAGGGTTTGATCATTA+GGG | + | chr2.2:53858472-53858491 | MS.gene071833:intron | 35.0% | |
| GCTTAATATCTTAACCTGTG+GGG | - | chr2.2:53858504-53858523 | None:intergenic | 35.0% | |
| GGATTTGAAGAGAGAAACAT+TGG | + | chr2.2:53858449-53858468 | MS.gene071833:intron | 35.0% | |
| GGCTTAATATCTTAACCTGT+GGG | - | chr2.2:53858505-53858524 | None:intergenic | 35.0% | |
| GTGATGAAGCTAGAAATATC+AGG | + | chr2.2:53858777-53858796 | MS.gene071833:intron | 35.0% | |
| GTTCAAGAGAAATCAGAAAG+GGG | + | chr2.2:53858197-53858216 | MS.gene071833:intron | 35.0% | |
| GTTCTGCAAATAAGAGAAGT+TGG | - | chr2.2:53858176-53858195 | None:intergenic | 35.0% | |
| TAGAATTGATCTCCATGAAC+TGG | - | chr2.2:53858614-53858633 | None:intergenic | 35.0% | |
| TGGCTTAATATCTTAACCTG+TGG | - | chr2.2:53858506-53858525 | None:intergenic | 35.0% | |
| TTCTCCATGAAATCCTCAAT+GGG | - | chr2.2:53857771-53857790 | None:intergenic | 35.0% | |
| TTTCTCTCTTCAAATCCCTT+CGG | - | chr2.2:53858446-53858465 | None:intergenic | 35.0% | |
| ! | AGGAAAATTTGGAACGACAA+AGG | - | chr2.2:53857976-53857995 | None:intergenic | 35.0% |
| ! | GTTAGGGATCTGAAACTTAT+GGG | - | chr2.2:53857850-53857869 | None:intergenic | 35.0% |
| ! | TGTTAGGGATCTGAAACTTA+TGG | - | chr2.2:53857851-53857870 | None:intergenic | 35.0% |
| !! | TTCATTCCATTTCTAGCATC+TGG | + | chr2.2:53857489-53857508 | MS.gene071833:CDS | 35.0% |
| !!! | CACACTCATTTTGAAACTGA+GGG | - | chr2.2:53859334-53859353 | None:intergenic | 35.0% |
| !!! | GCATCGTTGTATTTTTTCGA+TGG | + | chr2.2:53859648-53859667 | MS.gene071833:intron | 35.0% |
| AAACTGATAACACAAGTCCG+AGG | + | chr2.2:53858641-53858660 | MS.gene071833:intron | 40.0% | |
| AAAGAAAAGTGGTTGCCGAA+GGG | + | chr2.2:53858428-53858447 | MS.gene071833:intron | 40.0% | |
| AAATCAGAAAGGGGAAACGA+GGG | + | chr2.2:53858206-53858225 | MS.gene071833:intron | 40.0% | |
| ACACAAGCTATTCAAGAAGG+TGG | + | chr2.2:53858830-53858849 | MS.gene071833:intron | 40.0% | |
| AGAGAGAAACATTGGGAAGA+AGG | + | chr2.2:53858457-53858476 | MS.gene071833:intron | 40.0% | |
| ATAACACAAGTCCGAGGAAT+TGG | + | chr2.2:53858647-53858666 | MS.gene071833:intron | 40.0% | |
| ATATTAAGCCACCATGCAGT+GGG | + | chr2.2:53858515-53858534 | MS.gene071833:intron | 40.0% | |
| ATCGTAGAGGCTGTTAGTAT+GGG | + | chr2.2:53858569-53858588 | MS.gene071833:intron | 40.0% | |
| CCGTTCAAGAGAAATCAGAA+AGG | + | chr2.2:53858195-53858214 | MS.gene071833:intron | 40.0% | |
| CCTCAGTTTCAAAATGAGTG+TGG | + | chr2.2:53859332-53859351 | MS.gene071833:intron | 40.0% | |
| CTGGAACAACCCATATGAAT+GGG | - | chr2.2:53858373-53858392 | None:intergenic | 40.0% | |
| GAGAGAAACATTGGGAAGAA+GGG | + | chr2.2:53858458-53858477 | MS.gene071833:intron | 40.0% | |
| GAGCAAAGATAGCATAGAGA+AGG | + | chr2.2:53858730-53858749 | MS.gene071833:intron | 40.0% | |
| GCCCCTATATATAGCAAGTT+TGG | + | chr2.2:53859579-53859598 | MS.gene071833:intron | 40.0% | |
| GCGAAGAAGAGAAAGAAAAG+TGG | + | chr2.2:53858417-53858436 | MS.gene071833:intron | 40.0% | |
| GCTACACAAGCTATTCAAGA+AGG | + | chr2.2:53858827-53858846 | MS.gene071833:intron | 40.0% | |
| GGAAGAAGGGTTTGATCATT+AGG | + | chr2.2:53858471-53858490 | MS.gene071833:intron | 40.0% | |
| TATCGTAGAGGCTGTTAGTA+TGG | + | chr2.2:53858568-53858587 | MS.gene071833:intron | 40.0% | |
| TCAGAGATGATACAATCTGG+TGG | - | chr2.2:53857798-53857817 | None:intergenic | 40.0% | |
| TCTTCTTTCCCTTTCTTCTC+TGG | - | chr2.2:53858392-53858411 | None:intergenic | 40.0% | |
| TGAATTAATCATGCGGCTTG+AGG | - | chr2.2:53858910-53858929 | None:intergenic | 40.0% | |
| ! | AGAGAGATTTGGTAAGGGAT+TGG | - | chr2.2:53857599-53857618 | None:intergenic | 40.0% |
| ! | ATACCCATGGGCTAATGATT+TGG | + | chr2.2:53857824-53857843 | MS.gene071833:CDS | 40.0% |
| ! | GGATGAGAGAGATTTGGTAA+GGG | - | chr2.2:53857604-53857623 | None:intergenic | 40.0% |
| ! | TCTGGAACAACCCATATGAA+TGG | - | chr2.2:53858374-53858393 | None:intergenic | 40.0% |
| !! | GATTTGAGAGTACTTGTCAC+AGG | - | chr2.2:53859070-53859089 | None:intergenic | 40.0% |
| !!! | CCACACTCATTTTGAAACTG+AGG | - | chr2.2:53859335-53859354 | None:intergenic | 40.0% |
| AAACCACGGGTCACAAAGTT+TGG | + | chr2.2:53858141-53858160 | MS.gene071833:CDS | 45.0% | |
| AGGGTTTGATCATTAGGGGT+TGG | + | chr2.2:53858477-53858496 | MS.gene071833:intron | 45.0% | |
| ATAGCATAGAGAAGGCTGTG+AGG | + | chr2.2:53858738-53858757 | MS.gene071833:intron | 45.0% | |
| CAACACTACGAGAAAACCAC+GGG | + | chr2.2:53858128-53858147 | MS.gene071833:CDS | 45.0% | |
| CAGATTCAATGCCATCAGGA+AGG | - | chr2.2:53857683-53857702 | None:intergenic | 45.0% | |
| CCAACACTACGAGAAAACCA+CGG | + | chr2.2:53858127-53858146 | MS.gene071833:CDS | 45.0% | |
| CCACACAAGGTGATATGATG+AGG | - | chr2.2:53857996-53858015 | None:intergenic | 45.0% | |
| CCTCATCATATCACCTTGTG+TGG | + | chr2.2:53857993-53858012 | MS.gene071833:CDS | 45.0% | |
| CGACTTCAACTCCAATTCCT+CGG | - | chr2.2:53858661-53858680 | None:intergenic | 45.0% | |
| CGAGGAATTGGAGTTGAAGT+CGG | + | chr2.2:53858659-53858678 | MS.gene071833:intron | 45.0% | |
| CGTCTCAACGACAACATCAA+CGG | - | chr2.2:53859696-53859715 | None:intergenic | 45.0% | |
| GAAAGAAAAGTGGTTGCCGA+AGG | + | chr2.2:53858427-53858446 | MS.gene071833:intron | 45.0% | |
| GAAATCAGAAAGGGGAAACG+AGG | + | chr2.2:53858205-53858224 | MS.gene071833:intron | 45.0% | |
| GACACAGATTCAATGCCATC+AGG | - | chr2.2:53857687-53857706 | None:intergenic | 45.0% | |
| GATATTAAGCCACCATGCAG+TGG | + | chr2.2:53858514-53858533 | MS.gene071833:intron | 45.0% | |
| GCAATTATGTTTGCATCCCG+TGG | + | chr2.2:53857537-53857556 | MS.gene071833:CDS | 45.0% | |
| GCGTCAGAGATGATACAATC+TGG | - | chr2.2:53857801-53857820 | None:intergenic | 45.0% | |
| GGGTTGTTCCAGAGAAGAAA+GGG | + | chr2.2:53858381-53858400 | MS.gene071833:intron | 45.0% | |
| GGGTTTGATCATTAGGGGTT+GGG | + | chr2.2:53858478-53858497 | MS.gene071833:intron | 45.0% | |
| GGTCACAAAGTTTGGCATCT+TGG | + | chr2.2:53858149-53858168 | MS.gene071833:CDS | 45.0% | |
| GTTGTCGTTGAGACGTTCAT+CGG | + | chr2.2:53859701-53859720 | MS.gene071833:CDS | 45.0% | |
| TATTAAGCCACCATGCAGTG+GGG | + | chr2.2:53858516-53858535 | MS.gene071833:intron | 45.0% | |
| TGAAATCCTCAATGGGTCCA+TGG | - | chr2.2:53857764-53857783 | None:intergenic | 45.0% | |
| TGAACTGGCCACGTTATCAT+TGG | - | chr2.2:53858599-53858618 | None:intergenic | 45.0% | |
| TGCTCGAGAGTTTGGAGAAA+AGG | + | chr2.2:53858805-53858824 | MS.gene071833:intron | 45.0% | |
| TGGACCCATTGAGGATTTCA+TGG | + | chr2.2:53857764-53857783 | MS.gene071833:CDS | 45.0% | |
| TGGGTTGTTCCAGAGAAGAA+AGG | + | chr2.2:53858380-53858399 | MS.gene071833:intron | 45.0% | |
| TTGAAGTCGGTGCAACAGAA+TGG | + | chr2.2:53858672-53858691 | MS.gene071833:intron | 45.0% | |
| TTTGGTAAGGGATTGGACGT+TGG | - | chr2.2:53857592-53857611 | None:intergenic | 45.0% | |
| ! | ATCAGGAAGGCCAACTTGTT+GGG | - | chr2.2:53857670-53857689 | None:intergenic | 45.0% |
| ! | ATGATAACGTGGCCAGTTCA+TGG | + | chr2.2:53858599-53858618 | MS.gene071833:intron | 45.0% |
| ! | CGATGGATCTCTTGTTGTGT+TGG | + | chr2.2:53859665-53859684 | MS.gene071833:CDS | 45.0% |
| ! | CGGATGAGAGAGATTTGGTA+AGG | - | chr2.2:53857605-53857624 | None:intergenic | 45.0% |
| ! | TGGGAGTTCCAATGATAACG+TGG | + | chr2.2:53858588-53858607 | MS.gene071833:intron | 45.0% |
| ! | TTGTGTCGAGCATCGTTTCT+AGG | - | chr2.2:53858046-53858065 | None:intergenic | 45.0% |
| !! | GTGGCTTTAGCCAATTGCAT+TGG | + | chr2.2:53859351-53859370 | MS.gene071833:intron | 45.0% |
| !!! | TGTTTTGAGGGTCTCCATGA+GGG | - | chr2.2:53857907-53857926 | None:intergenic | 45.0% |
| !!! | TTGTTTTGAGGGTCTCCATG+AGG | - | chr2.2:53857908-53857927 | None:intergenic | 45.0% |
| AATCCTCAATGGGTCCATGG+AGG | - | chr2.2:53857761-53857780 | None:intergenic | 50.0% | |
| ACATCTTGGAAGATCCACCG+TGG | + | chr2.2:53857726-53857745 | MS.gene071833:CDS | 50.0% | |
| ACGGTGGATCTTCCAAGATG+TGG | - | chr2.2:53857727-53857746 | None:intergenic | 50.0% | |
| AGCGGGTCACCCATTCATAT+GGG | + | chr2.2:53858361-53858380 | MS.gene071833:intron | 50.0% | |
| AGTCGACAGTGTGAAAGCGA+AGG | - | chr2.2:53857641-53857660 | None:intergenic | 50.0% | |
| AGTGTGAAAGCGAAGGAAGG+AGG | - | chr2.2:53857634-53857653 | None:intergenic | 50.0% | |
| ATGCCAAACTTTGTGACCCG+TGG | - | chr2.2:53858147-53858166 | None:intergenic | 50.0% | |
| ATTAAGCCACCATGCAGTGG+GGG | + | chr2.2:53858517-53858536 | MS.gene071833:intron | 50.0% | |
| CATCAGGAAGGCCAACTTGT+TGG | - | chr2.2:53857671-53857690 | None:intergenic | 50.0% | |
| GAAGGCTGTGAGGAGATTGA+TGG | + | chr2.2:53858748-53858767 | MS.gene071833:intron | 50.0% | |
| GACAGTGTGAAAGCGAAGGA+AGG | - | chr2.2:53857637-53857656 | None:intergenic | 50.0% | |
| GATTTATGACGCATTGCGGG+TGG | + | chr2.2:53858540-53858559 | MS.gene071833:intron | 50.0% | |
| GCAACAGAATGGTGTACGAG+TGG | + | chr2.2:53858683-53858702 | MS.gene071833:intron | 50.0% | |
| GCTGTGAGGAGATTGATGGA+CGG | + | chr2.2:53858752-53858771 | MS.gene071833:intron | 50.0% | |
| GGGCCAAATCATTAGCCCAT+GGG | - | chr2.2:53857830-53857849 | None:intergenic | 50.0% | |
| GGGGATTTATGACGCATTGC+GGG | + | chr2.2:53858537-53858556 | MS.gene071833:intron | 50.0% | |
| GGGGGATTTATGACGCATTG+CGG | + | chr2.2:53858536-53858555 | MS.gene071833:intron | 50.0% | |
| GTAAGGGATTGGACGTTGGA+GGG | - | chr2.2:53857588-53857607 | None:intergenic | 50.0% | |
| GTGGATCTTCCAAGATGTGG+TGG | - | chr2.2:53857724-53857743 | None:intergenic | 50.0% | |
| GTGTGAAAGCGAAGGAAGGA+GGG | - | chr2.2:53857633-53857652 | None:intergenic | 50.0% | |
| TCATAAATCCCCCCACTGCA+TGG | - | chr2.2:53858529-53858548 | None:intergenic | 50.0% | |
| TGGGCCAAATCATTAGCCCA+TGG | - | chr2.2:53857831-53857850 | None:intergenic | 50.0% | |
| TGTTGCGGAGAGAGAGAAGT+TGG | + | chr2.2:53858706-53858725 | MS.gene071833:intron | 50.0% | |
| ! | ATGGTGTACGAGTGGTGTTG+CGG | + | chr2.2:53858691-53858710 | MS.gene071833:intron | 50.0% |
| ! | CCGTGGTTTTCTCGTAGTGT+TGG | - | chr2.2:53858130-53858149 | None:intergenic | 50.0% |
| ! | CTTCCAAGATGTGGTGGAGT+CGG | - | chr2.2:53857718-53857737 | None:intergenic | 50.0% |
| ! | CTTTGGCGGTTTTCCACACA+AGG | - | chr2.2:53858009-53858028 | None:intergenic | 50.0% |
| ! | TGGTGATGACTGTGACGTGT+TGG | - | chr2.2:53857563-53857582 | None:intergenic | 50.0% |
| !! | CAACAAGTTGGCCTTCCTGA+TGG | + | chr2.2:53857669-53857688 | MS.gene071833:CDS | 50.0% |
| AAAGCGAAGGAAGGAGGGAG+CGG | - | chr2.2:53857628-53857647 | None:intergenic | 55.0% | |
| AGCGGCGGATGAGAGAGATT+TGG | - | chr2.2:53857610-53857629 | None:intergenic | 55.0% | |
| AGGGTACGTGCTCGAGAGTT+TGG | + | chr2.2:53858797-53858816 | MS.gene071833:intron | 55.0% | |
| ATGTACACGAGTGCCTGAGC+TGG | + | chr2.2:53858237-53858256 | MS.gene071833:intron | 55.0% | |
| CAGCGGGTCACCCATTCATA+TGG | + | chr2.2:53858360-53858379 | MS.gene071833:intron | 55.0% | |
| CGGGTGGAACTCTATCGTAG+AGG | + | chr2.2:53858556-53858575 | MS.gene071833:intron | 55.0% | |
| CTCTGACGCTGCATACCCAT+GGG | + | chr2.2:53857812-53857831 | MS.gene071833:CDS | 55.0% | |
| GACTTCCCCTCCCAACAAGT+TGG | + | chr2.2:53857657-53857676 | MS.gene071833:CDS | 55.0% | |
| GGTAAGGGATTGGACGTTGG+AGG | - | chr2.2:53857589-53857608 | None:intergenic | 55.0% | |
| GTCGTTGAGACGTTCATCGG+CGG | + | chr2.2:53859704-53859723 | MS.gene071833:CDS | 55.0% | |
| TAAATCCCCCCACTGCATGG+TGG | - | chr2.2:53858526-53858545 | None:intergenic | 55.0% | |
| TCTCTGACGCTGCATACCCA+TGG | + | chr2.2:53857811-53857830 | MS.gene071833:CDS | 55.0% | |
| TCTTTGAGTCGAGCCAGCTC+AGG | - | chr2.2:53858253-53858272 | None:intergenic | 55.0% | |
| TTAAGCCACCATGCAGTGGG+GGG | + | chr2.2:53858518-53858537 | MS.gene071833:intron | 55.0% | |
| TTGAGACGTTCATCGGCGGT+GGG | + | chr2.2:53859708-53859727 | MS.gene071833:CDS | 55.0% | |
| ! | GTGAGGAGATTGATGGACGG+TGG | + | chr2.2:53858755-53858774 | MS.gene071833:intron | 55.0% |
| ! | TGACTGTGACGTGTTGGCCA+CGG | - | chr2.2:53857557-53857576 | None:intergenic | 55.0% |
| !! | AGGAAGGCCAACTTGTTGGG+AGG | - | chr2.2:53857667-53857686 | None:intergenic | 55.0% |
| !! | GAAGGCCAACTTGTTGGGAG+GGG | - | chr2.2:53857665-53857684 | None:intergenic | 55.0% |
| !! | GGAAGGCCAACTTGTTGGGA+GGG | - | chr2.2:53857666-53857685 | None:intergenic | 55.0% |
| CCATGAGGGAGACGGCAAAG+AGG | - | chr2.2:53857893-53857912 | None:intergenic | 60.0% | |
| CCTCTTTGCCGTCTCCCTCA+TGG | + | chr2.2:53857890-53857909 | MS.gene071833:CDS | 60.0% | |
| GAGGGTCTCCATGAGGGAGA+CGG | - | chr2.2:53857901-53857920 | None:intergenic | 60.0% | |
| GCATGCTCGCTAGAAGCAGC+GGG | + | chr2.2:53858344-53858363 | MS.gene071833:intron | 60.0% | |
| GCTCCTCCATGGACCCATTG+AGG | + | chr2.2:53857755-53857774 | MS.gene071833:CDS | 60.0% | |
| GGATTGGACGTTGGAGGGAG+TGG | - | chr2.2:53857583-53857602 | None:intergenic | 60.0% | |
| GGCATGCTCGCTAGAAGCAG+CGG | + | chr2.2:53858343-53858362 | MS.gene071833:intron | 60.0% | |
| GTTGAGACGTTCATCGGCGG+TGG | + | chr2.2:53859707-53859726 | MS.gene071833:CDS | 60.0% | |
| ! | AGATGTGGTGGAGTCGGTGG+TGG | - | chr2.2:53857712-53857731 | None:intergenic | 60.0% |
| ! | CCAAGATGTGGTGGAGTCGG+TGG | - | chr2.2:53857715-53857734 | None:intergenic | 60.0% |
| ! | GACTGTGACGTGTTGGCCAC+GGG | - | chr2.2:53857556-53857575 | None:intergenic | 60.0% |
| !! | CATGGAGGAGCATTGCGCCA+CGG | - | chr2.2:53857746-53857765 | None:intergenic | 60.0% |
| !! | CCACCGACTCCACCACATCT+TGG | + | chr2.2:53857712-53857731 | MS.gene071833:CDS | 60.0% |
| ACGTTCATCGGCGGTGGGTC+AGG | + | chr2.2:53859713-53859732 | MS.gene071833:CDS | 65.0% | |
| CATTAGGGGTTGGGCCCCAC+AGG | + | chr2.2:53858487-53858506 | MS.gene071833:intron | 65.0% | |
| CGTGGCGCAATGCTCCTCCA+TGG | + | chr2.2:53857744-53857763 | MS.gene071833:CDS | 65.0% | |
| GGCGGTGGGTCAGGACAACT+CGG | + | chr2.2:53859722-53859741 | MS.gene071833:CDS | 65.0% | |
| GGTGGGTCAGGACAACTCGG+TGG | + | chr2.2:53859725-53859744 | MS.gene071833:CDS | 65.0% | |
| GCGAAGGAAGGAGGGAGCGG+CGG | - | chr2.2:53857625-53857644 | None:intergenic | 70.0% | |
| !! | GGAGGAGCATTGCGCCACGG+TGG | - | chr2.2:53857743-53857762 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 53857450 | 53859776 | 53857450 | ID=MS.gene071833 |
| chr2.2 | mRNA | 53857450 | 53859776 | 53857450 | ID=MS.gene071833.t1;Parent=MS.gene071833 |
| chr2.2 | exon | 53857450 | 53858170 | 53857450 | ID=MS.gene071833.t1.exon1;Parent=MS.gene071833.t1 |
| chr2.2 | CDS | 53857450 | 53858170 | 53857450 | ID=cds.MS.gene071833.t1;Parent=MS.gene071833.t1 |
| chr2.2 | exon | 53859649 | 53859776 | 53859649 | ID=MS.gene071833.t1.exon2;Parent=MS.gene071833.t1 |
| chr2.2 | CDS | 53859649 | 53859776 | 53859649 | ID=cds.MS.gene071833.t1;Parent=MS.gene071833.t1 |
| Gene Sequence |
| Protein sequence |
