Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21268.t1 | XP_024639271.1 | 96.2 | 266 | 10 | 0 | 1 | 266 | 1 | 266 | 8.40E-146 | 526.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21268.t1 | Q2V6J9 | 34.5 | 261 | 160 | 5 | 10 | 264 | 11 | 266 | 2.1e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21268.t1 | G7K602 | 96.2 | 266 | 10 | 0 | 1 | 266 | 1 | 266 | 6.1e-146 | 526.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene21268 | 0.80949 | 1.84E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene21268 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene21268 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene049907 | MS.gene21268 | 0.918033 | 2.56E-86 | -1.69E-46 |
| MS.gene050216 | MS.gene21268 | 0.8009 | 1.16E-48 | -1.69E-46 |
| MS.gene050501 | MS.gene21268 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene21268 | 0.820504 | 6.62E-53 | -1.69E-46 |
| MS.gene050520 | MS.gene21268 | 0.865165 | 7.20E-65 | -1.69E-46 |
| MS.gene050675 | MS.gene21268 | 0.828977 | 6.66E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene21268 | 0.809985 | 1.44E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene21268 | 0.814902 | 1.22E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene21268 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene21268 | 0.845674 | 3.50E-59 | -1.69E-46 |
| MS.gene051509 | MS.gene21268 | 0.850739 | 1.40E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene21268 | 0.831277 | 1.83E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene21268 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene053018 | MS.gene21268 | 0.809096 | 2.24E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene21268 | 0.803068 | 4.16E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene21268 | 0.801303 | 9.60E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene21268 | 0.81078 | 9.72E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene21268 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene21268 | 0.811592 | 6.48E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene21268 | 0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene054196 | MS.gene21268 | 0.819795 | 9.63E-53 | -1.69E-46 |
| MS.gene054337 | MS.gene21268 | 0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene21268 | 0.82244 | 2.37E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene21268 | 0.8053 | 1.43E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene21268 | 0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene21268 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene21268 | 0.834367 | 3.12E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene21268 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene05601 | MS.gene21268 | 0.826402 | 2.77E-54 | -1.69E-46 |
| MS.gene056449 | MS.gene21268 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene21268 | 0.806822 | 6.82E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene21268 | 0.84027 | 9.62E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene21268 | 0.815863 | 7.43E-52 | -1.69E-46 |
| MS.gene056878 | MS.gene21268 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene21268 | 0.812164 | 4.87E-51 | -1.69E-46 |
| MS.gene058183 | MS.gene21268 | 0.823013 | 1.74E-53 | -1.69E-46 |
| MS.gene058459 | MS.gene21268 | 0.805297 | 1.43E-49 | -1.69E-46 |
| MS.gene058978 | MS.gene21268 | -0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene059034 | MS.gene21268 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene21268 | 0.812695 | 3.72E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene21268 | 0.872835 | 2.34E-67 | -1.69E-46 |
| MS.gene059368 | MS.gene21268 | 0.840653 | 7.64E-58 | -1.69E-46 |
| MS.gene059680 | MS.gene21268 | 0.907234 | 6.32E-81 | -1.69E-46 |
| MS.gene059711 | MS.gene21268 | 0.835458 | 1.66E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene21268 | 0.816867 | 4.43E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene21268 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene21268 | 0.849954 | 2.32E-60 | -1.69E-46 |
| MS.gene060482 | MS.gene21268 | 0.859763 | 3.30E-63 | -1.69E-46 |
| MS.gene060778 | MS.gene21268 | 0.829878 | 4.02E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene21268 | 0.843049 | 1.78E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21268.t1 | MTR_5g067170 | 95.203 | 271 | 12 | 1 | 1 | 270 | 1 | 271 | 0.0 | 516 |
| MS.gene21268.t1 | MTR_2g034990 | 74.721 | 269 | 64 | 2 | 1 | 266 | 1 | 268 | 1.24e-147 | 424 |
| MS.gene21268.t1 | MTR_5g029800 | 77.068 | 266 | 59 | 2 | 1 | 266 | 1 | 264 | 2.06e-142 | 411 |
| MS.gene21268.t1 | MTR_2g035020 | 69.888 | 269 | 77 | 2 | 1 | 266 | 1 | 268 | 1.23e-132 | 387 |
| MS.gene21268.t1 | MTR_7g012120 | 61.635 | 318 | 104 | 7 | 1 | 314 | 6 | 309 | 1.08e-122 | 361 |
| MS.gene21268.t1 | MTR_4g117960 | 61.314 | 274 | 100 | 3 | 1 | 271 | 1 | 271 | 4.30e-116 | 344 |
| MS.gene21268.t1 | MTR_4g117980 | 59.851 | 269 | 104 | 2 | 1 | 266 | 1 | 268 | 9.61e-110 | 328 |
| MS.gene21268.t1 | MTR_6g035185 | 59.925 | 267 | 103 | 2 | 1 | 264 | 1 | 266 | 2.13e-107 | 322 |
| MS.gene21268.t1 | MTR_6g035265 | 59.398 | 266 | 101 | 3 | 1 | 266 | 1 | 259 | 3.42e-104 | 313 |
| MS.gene21268.t1 | MTR_8g032950 | 55.903 | 288 | 115 | 5 | 2 | 281 | 3 | 286 | 2.39e-93 | 286 |
| MS.gene21268.t1 | MTR_4g117890 | 53.257 | 261 | 112 | 3 | 7 | 266 | 9 | 260 | 1.85e-90 | 278 |
| MS.gene21268.t1 | MTR_0536s0020 | 52.874 | 261 | 113 | 3 | 7 | 266 | 14 | 265 | 2.63e-90 | 278 |
| MS.gene21268.t1 | MTR_4g118000 | 49.359 | 312 | 130 | 8 | 7 | 314 | 8 | 295 | 5.67e-88 | 272 |
| MS.gene21268.t1 | MTR_0536s0010 | 50.916 | 273 | 123 | 4 | 6 | 277 | 16 | 278 | 3.14e-87 | 270 |
| MS.gene21268.t1 | MTR_4g117950 | 48.387 | 310 | 138 | 8 | 6 | 313 | 1 | 290 | 6.32e-85 | 264 |
| MS.gene21268.t1 | MTR_4g117970 | 56.995 | 193 | 74 | 3 | 78 | 268 | 56 | 241 | 3.26e-71 | 227 |
| MS.gene21268.t1 | MTR_2g035040 | 52.970 | 202 | 81 | 5 | 115 | 314 | 23 | 212 | 3.80e-66 | 213 |
| MS.gene21268.t1 | MTR_4g031800 | 38.168 | 262 | 150 | 5 | 8 | 264 | 6 | 260 | 3.52e-53 | 181 |
| MS.gene21268.t1 | MTR_0536s0030 | 47.027 | 185 | 88 | 3 | 36 | 219 | 5 | 180 | 2.43e-47 | 163 |
| MS.gene21268.t1 | MTR_2g035050 | 71.304 | 115 | 30 | 1 | 1 | 112 | 1 | 115 | 1.36e-46 | 154 |
| MS.gene21268.t1 | MTR_4g485630 | 32.841 | 271 | 166 | 7 | 10 | 270 | 8 | 272 | 1.18e-39 | 145 |
| MS.gene21268.t1 | MTR_6g035295 | 33.333 | 270 | 163 | 9 | 10 | 264 | 11 | 278 | 2.62e-36 | 137 |
| MS.gene21268.t1 | MTR_5g039900 | 31.923 | 260 | 161 | 7 | 10 | 257 | 12 | 267 | 5.04e-36 | 136 |
| MS.gene21268.t1 | MTR_5g016660 | 29.316 | 307 | 192 | 7 | 10 | 305 | 9 | 301 | 1.14e-34 | 132 |
| MS.gene21268.t1 | MTR_5g045960 | 29.252 | 294 | 183 | 9 | 12 | 284 | 8 | 297 | 1.93e-34 | 131 |
| MS.gene21268.t1 | MTR_7g070800 | 30.921 | 304 | 163 | 8 | 6 | 277 | 1 | 289 | 7.09e-34 | 130 |
| MS.gene21268.t1 | MTR_7g117405 | 30.976 | 297 | 183 | 7 | 13 | 291 | 12 | 304 | 2.32e-33 | 128 |
| MS.gene21268.t1 | MTR_7g102450 | 32.302 | 291 | 162 | 10 | 13 | 285 | 11 | 284 | 2.70e-33 | 128 |
| MS.gene21268.t1 | MTR_7g055710 | 32.061 | 262 | 154 | 7 | 10 | 255 | 10 | 263 | 6.15e-33 | 127 |
| MS.gene21268.t1 | MTR_7g070860 | 30.132 | 302 | 164 | 8 | 8 | 277 | 4 | 290 | 2.76e-32 | 125 |
| MS.gene21268.t1 | MTR_4g485590 | 32.046 | 259 | 133 | 7 | 12 | 257 | 10 | 238 | 9.70e-32 | 123 |
| MS.gene21268.t1 | MTR_5g045970 | 29.932 | 294 | 181 | 9 | 15 | 288 | 20 | 308 | 1.68e-31 | 123 |
| MS.gene21268.t1 | MTR_7g070930 | 31.579 | 266 | 150 | 8 | 10 | 255 | 13 | 266 | 6.11e-31 | 122 |
| MS.gene21268.t1 | MTR_7g071040 | 30.712 | 267 | 151 | 8 | 11 | 255 | 15 | 269 | 4.44e-30 | 119 |
| MS.gene21268.t1 | MTR_7g070910 | 32.197 | 264 | 151 | 9 | 11 | 255 | 9 | 263 | 4.62e-30 | 119 |
| MS.gene21268.t1 | MTR_7g070740 | 31.579 | 266 | 150 | 8 | 11 | 255 | 9 | 263 | 6.10e-30 | 119 |
| MS.gene21268.t1 | MTR_7g070660 | 29.605 | 304 | 175 | 8 | 1 | 277 | 1 | 292 | 7.46e-30 | 119 |
| MS.gene21268.t1 | MTR_7g070780 | 32.184 | 261 | 146 | 6 | 1 | 242 | 1 | 249 | 1.05e-29 | 118 |
| MS.gene21268.t1 | MTR_8g066610 | 27.206 | 272 | 177 | 4 | 9 | 264 | 7 | 273 | 3.24e-29 | 117 |
| MS.gene21268.t1 | MTR_5g040030 | 26.888 | 331 | 214 | 9 | 8 | 311 | 11 | 340 | 4.34e-29 | 117 |
| MS.gene21268.t1 | MTR_7g102560 | 28.440 | 327 | 201 | 13 | 11 | 314 | 7 | 323 | 8.77e-29 | 115 |
| MS.gene21268.t1 | MTR_7g070810 | 31.615 | 291 | 169 | 7 | 8 | 277 | 6 | 287 | 2.24e-28 | 114 |
| MS.gene21268.t1 | MTR_7g070610 | 30.566 | 265 | 154 | 7 | 10 | 255 | 12 | 265 | 4.51e-28 | 114 |
| MS.gene21268.t1 | MTR_1g062380 | 29.153 | 295 | 183 | 7 | 15 | 288 | 20 | 309 | 5.02e-28 | 114 |
| MS.gene21268.t1 | MTR_7g102460 | 27.515 | 338 | 215 | 11 | 11 | 325 | 7 | 337 | 7.58e-27 | 110 |
| MS.gene21268.t1 | MTR_4g108250 | 28.205 | 312 | 178 | 8 | 1 | 277 | 1 | 301 | 8.01e-27 | 110 |
| MS.gene21268.t1 | MTR_7g102490 | 27.405 | 343 | 211 | 12 | 11 | 325 | 7 | 339 | 1.65e-26 | 109 |
| MS.gene21268.t1 | MTR_1g040310 | 31.579 | 266 | 162 | 7 | 4 | 256 | 8 | 266 | 3.52e-26 | 108 |
| MS.gene21268.t1 | MTR_7g070940 | 31.034 | 290 | 171 | 8 | 8 | 277 | 6 | 286 | 5.87e-26 | 107 |
| MS.gene21268.t1 | MTR_4g024020 | 28.529 | 340 | 211 | 12 | 11 | 325 | 7 | 339 | 1.09e-25 | 107 |
| MS.gene21268.t1 | MTR_7g071050 | 34.659 | 176 | 102 | 3 | 10 | 180 | 12 | 179 | 1.07e-24 | 103 |
| MS.gene21268.t1 | MTR_4g485620 | 26.210 | 248 | 155 | 5 | 23 | 246 | 1 | 244 | 3.73e-24 | 102 |
| MS.gene21268.t1 | MTR_7g070870 | 30.556 | 288 | 173 | 8 | 8 | 277 | 16 | 294 | 4.23e-23 | 99.8 |
| MS.gene21268.t1 | MTR_7g102550 | 27.742 | 310 | 189 | 12 | 13 | 301 | 9 | 304 | 2.17e-22 | 97.8 |
| MS.gene21268.t1 | MTR_4g485640 | 28.455 | 246 | 155 | 6 | 19 | 257 | 217 | 448 | 2.19e-22 | 98.2 |
| MS.gene21268.t1 | MTR_8g044140 | 30.435 | 230 | 141 | 7 | 40 | 256 | 6 | 229 | 2.26e-22 | 97.4 |
| MS.gene21268.t1 | MTR_7g102520 | 28.829 | 333 | 195 | 15 | 14 | 319 | 15 | 332 | 3.26e-21 | 94.4 |
| MS.gene21268.t1 | MTR_7g039570 | 27.586 | 232 | 157 | 4 | 10 | 232 | 13 | 242 | 1.14e-20 | 89.7 |
| MS.gene21268.t1 | MTR_7g470590 | 38.261 | 115 | 65 | 2 | 10 | 118 | 10 | 124 | 1.54e-17 | 77.8 |
| MS.gene21268.t1 | MTR_7g070570 | 38.261 | 115 | 65 | 2 | 10 | 118 | 10 | 124 | 1.54e-17 | 77.8 |
| MS.gene21268.t1 | MTR_0009s0240 | 26.033 | 242 | 169 | 5 | 12 | 245 | 8 | 247 | 1.84e-16 | 80.1 |
| MS.gene21268.t1 | MTR_8g466240 | 26.562 | 256 | 170 | 9 | 16 | 264 | 13 | 257 | 2.40e-14 | 73.9 |
| MS.gene21268.t1 | MTR_8g068330 | 29.412 | 136 | 94 | 2 | 7 | 141 | 4 | 138 | 1.53e-11 | 65.5 |
| MS.gene21268.t1 | MTR_7g067330 | 29.452 | 146 | 95 | 4 | 9 | 149 | 5 | 147 | 7.19e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21268.t1 | AT2G36790 | 32.246 | 276 | 165 | 9 | 8 | 266 | 8 | 278 | 4.12e-36 | 136 |
| MS.gene21268.t1 | AT4G34131 | 30.000 | 270 | 165 | 6 | 8 | 258 | 7 | 271 | 1.40e-34 | 132 |
| MS.gene21268.t1 | AT2G36770 | 32.000 | 275 | 163 | 8 | 12 | 268 | 13 | 281 | 4.30e-34 | 130 |
| MS.gene21268.t1 | AT2G15490 | 29.878 | 328 | 181 | 12 | 14 | 314 | 10 | 315 | 1.26e-32 | 126 |
| MS.gene21268.t1 | AT2G15490 | 29.878 | 328 | 181 | 12 | 14 | 314 | 10 | 315 | 1.38e-32 | 126 |
| MS.gene21268.t1 | AT2G15480 | 27.545 | 334 | 199 | 11 | 5 | 314 | 4 | 318 | 2.29e-32 | 125 |
| MS.gene21268.t1 | AT2G36750 | 32.364 | 275 | 169 | 7 | 5 | 266 | 4 | 274 | 2.33e-32 | 125 |
| MS.gene21268.t1 | AT2G15480 | 27.545 | 334 | 199 | 11 | 5 | 314 | 4 | 318 | 2.70e-32 | 125 |
| MS.gene21268.t1 | AT2G36800 | 31.618 | 272 | 165 | 9 | 12 | 266 | 11 | 278 | 3.96e-32 | 125 |
| MS.gene21268.t1 | AT2G36780 | 30.218 | 321 | 198 | 10 | 12 | 312 | 13 | 327 | 5.45e-32 | 125 |
| MS.gene21268.t1 | AT2G36760 | 29.358 | 327 | 197 | 12 | 12 | 314 | 13 | 329 | 1.60e-31 | 123 |
| MS.gene21268.t1 | AT4G34135 | 27.675 | 271 | 172 | 7 | 8 | 259 | 8 | 273 | 2.29e-30 | 117 |
| MS.gene21268.t1 | AT4G34135 | 27.675 | 271 | 172 | 7 | 8 | 259 | 8 | 273 | 1.14e-29 | 118 |
| MS.gene21268.t1 | AT4G34138 | 28.044 | 271 | 164 | 9 | 11 | 258 | 9 | 271 | 9.86e-29 | 115 |
| MS.gene21268.t1 | AT3G53160 | 30.031 | 323 | 204 | 10 | 9 | 314 | 6 | 323 | 2.25e-28 | 114 |
| MS.gene21268.t1 | AT3G53150 | 26.471 | 306 | 192 | 9 | 6 | 285 | 15 | 313 | 4.74e-28 | 114 |
| MS.gene21268.t1 | AT2G15490 | 28.044 | 271 | 160 | 8 | 14 | 266 | 10 | 263 | 3.30e-23 | 97.1 |
| MS.gene21268.t1 | AT5G03490 | 29.801 | 151 | 102 | 3 | 5 | 152 | 13 | 162 | 1.07e-13 | 72.0 |
| MS.gene21268.t1 | AT1G51210 | 32.895 | 152 | 84 | 7 | 10 | 152 | 17 | 159 | 3.91e-13 | 70.1 |
| MS.gene21268.t1 | AT1G73880 | 25.188 | 266 | 148 | 12 | 5 | 240 | 6 | 250 | 3.63e-12 | 67.4 |
| MS.gene21268.t1 | AT1G10400 | 24.335 | 263 | 175 | 9 | 11 | 254 | 5 | 262 | 4.55e-11 | 63.9 |
Find 83 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGTTCTTGGTTCTGTTTC+AGG | 0.167910 | 5.1:-52060293 | MS.gene21268:CDS |
| TTATCTGGTGTCAAGGTTCT+TGG | 0.202879 | 5.1:-52060305 | MS.gene21268:CDS |
| AACAACTTTGTTGAACTTGA+TGG | 0.268372 | 5.1:-52061530 | MS.gene21268:CDS |
| GTCATAGATTCAACGCCTTT+AGG | 0.310762 | 5.1:+52061941 | None:intergenic |
| TCATAGATTCAACGCCTTTA+GGG | 0.333517 | 5.1:+52061942 | None:intergenic |
| GATCCATTGAATGTTAAATT+CGG | 0.334638 | 5.1:+52061761 | None:intergenic |
| AGGGAGGTCGACTTGTTGAT+AGG | 0.345335 | 5.1:+52061961 | None:intergenic |
| GCAGTTTGACCCCGACAAAA+TGG | 0.347545 | 5.1:+52059912 | None:intergenic |
| TGCTCCTCAACGAAGCGGTT+GGG | 0.351626 | 5.1:-52061871 | MS.gene21268:CDS |
| ATATTATCATGATGAAGATT+TGG | 0.351658 | 5.1:+52061641 | None:intergenic |
| TTGCTGATTCCGCGTTCTCA+TGG | 0.354036 | 5.1:-52061814 | MS.gene21268:CDS |
| ATCCCGAATTTAACATTCAA+TGG | 0.363700 | 5.1:-52061764 | MS.gene21268:CDS |
| ATGTGGTACTACTCTTTATC+TGG | 0.376125 | 5.1:-52060320 | MS.gene21268:CDS |
| CTAGCTGACCACTTTCTTCA+AGG | 0.397297 | 5.1:+52059861 | None:intergenic |
| ATCCATTGAATGTTAAATTC+GGG | 0.400611 | 5.1:+52061762 | None:intergenic |
| ATGAACATGCTGAGAACCTT+TGG | 0.425074 | 5.1:+52061599 | None:intergenic |
| CTTCTCTGCTTTCTCTTGAA+CGG | 0.427831 | 5.1:+52061427 | None:intergenic |
| TTCATTCCGTATCCAGCATC+TGG | 0.429905 | 5.1:-52062127 | MS.gene21268:CDS |
| GGCGGCGGATGAGAGAGTTT+TGG | 0.431363 | 5.1:+52062009 | None:intergenic |
| GTTCTCATGGGCTAATGACT+TGG | 0.447500 | 5.1:-52061801 | MS.gene21268:CDS |
| ACCACTTGGAAGATTCATAA+TGG | 0.450011 | 5.1:-52061899 | MS.gene21268:CDS |
| GGTCACAAGGCTTGGCATCT+TGG | 0.455150 | 5.1:-52061473 | MS.gene21268:CDS |
| GGGAGGTCGACTTGTTGATA+GGG | 0.457690 | 5.1:+52061962 | None:intergenic |
| GGCATCATGTGTCCAGATGC+TGG | 0.461672 | 5.1:+52062115 | None:intergenic |
| CAAAGTTGCTATATCACAAA+GGG | 0.462011 | 5.1:+52062093 | None:intergenic |
| ATTCGGGATTTGAAGCTTGT+GGG | 0.466780 | 5.1:+52061778 | None:intergenic |
| AAGTAAATTATTTGTTCGAA+GGG | 0.467021 | 5.1:+52061709 | None:intergenic |
| TGCTGATTCCGCGTTCTCAT+GGG | 0.468665 | 5.1:-52061813 | MS.gene21268:CDS |
| GCTCCTCAACGAAGCGGTTG+GGG | 0.470800 | 5.1:-52061870 | MS.gene21268:CDS |
| AAGAAAGTGGTCAGCTAGCT+AGG | 0.476608 | 5.1:-52059856 | MS.gene21268:CDS |
| GGTAAGGGATTGAGCATTGG+AGG | 0.477314 | 5.1:+52062030 | None:intergenic |
| ATGAATCTTCCAAGTGGTGA+TGG | 0.479162 | 5.1:+52061904 | None:intergenic |
| AAACCACGGGTCACAAGGCT+TGG | 0.486946 | 5.1:-52061481 | MS.gene21268:CDS |
| CCACATAGATTTATTCATTG+AGG | 0.488635 | 5.1:+52060337 | None:intergenic |
| GAAGTAAATTATTTGTTCGA+AGG | 0.489932 | 5.1:+52061708 | None:intergenic |
| CGTTCAAGAGAAAGCAGAGA+AGG | 0.498720 | 5.1:-52061426 | MS.gene21268:CDS |
| ATTGCGTTCCTTGAAGAAAG+TGG | 0.501011 | 5.1:-52059869 | MS.gene21268:CDS |
| TTTGGTAAGGGATTGAGCAT+TGG | 0.505959 | 5.1:+52062027 | None:intergenic |
| CGCCGCCCTCCGTCTTCACA+CGG | 0.506742 | 5.1:-52061993 | MS.gene21268:CDS |
| GGATTGAGCATTGGAGGGAG+TGG | 0.511295 | 5.1:+52062036 | None:intergenic |
| AATTCGGGATTTGAAGCTTG+TGG | 0.512657 | 5.1:+52061777 | None:intergenic |
| CTTTGGTGGTTTACTACACA+AGG | 0.515061 | 5.1:+52061616 | None:intergenic |
| ATGCTCCTCAACGAAGCGGT+TGG | 0.521793 | 5.1:-52061872 | MS.gene21268:CDS |
| CTACTCTTTATCTGGTGTCA+AGG | 0.524262 | 5.1:-52060312 | MS.gene21268:CDS |
| CAACAAGTCGACCTCCCTAA+AGG | 0.529003 | 5.1:-52061956 | MS.gene21268:CDS |
| GGAATGAAGTGAAGTTTCAA+TGG | 0.529260 | 5.1:+52062142 | None:intergenic |
| AAGGTTCTCAGCATGTTCAT+AGG | 0.529589 | 5.1:-52061596 | MS.gene21268:CDS |
| ATGTGTCCAGATGCTGGATA+CGG | 0.533156 | 5.1:+52062121 | None:intergenic |
| GGATCACGCTGAGTTGAAGA+AGG | 0.540111 | 5.1:+52059826 | None:intergenic |
| CGAGAAAACCACGGGTCACA+AGG | 0.547846 | 5.1:-52061486 | MS.gene21268:CDS |
| ATAAGTTGATAAGAAATGAA+TGG | 0.552177 | 5.1:-52062181 | None:intergenic |
| GTAAGGGATTGAGCATTGGA+GGG | 0.556034 | 5.1:+52062031 | None:intergenic |
| CGACTGATCCCATCACCACT+TGG | 0.558485 | 5.1:-52061913 | MS.gene21268:CDS |
| ATGAAGATTTGGAACGACAT+AGG | 0.564250 | 5.1:+52061652 | None:intergenic |
| GCAACTTTGTTTGCATCACG+TGG | 0.570638 | 5.1:-52062079 | MS.gene21268:CDS |
| TGAATCTTCCAAGTGGTGAT+GGG | 0.573205 | 5.1:+52061905 | None:intergenic |
| GGAAGTCAACCGTGTGAAGA+CGG | 0.578656 | 5.1:+52061984 | None:intergenic |
| TTTCGTTGAGAAGAATCCAC+CGG | 0.580184 | 5.1:-52061846 | MS.gene21268:CDS |
| GTTCAAGAGAAAGCAGAGAA+GGG | 0.583746 | 5.1:-52061425 | MS.gene21268:CDS |
| GACACAGTGCTTAAAAGTAC+AGG | 0.584468 | 5.1:-52061563 | MS.gene21268:CDS |
| AACCGTGTGAAGACGGAGGG+CGG | 0.586962 | 5.1:+52061991 | None:intergenic |
| GAATCAGCAATGATACAATC+CGG | 0.589174 | 5.1:+52061827 | None:intergenic |
| AGTGGTGATGGGATCAGTCG+TGG | 0.601980 | 5.1:+52061916 | None:intergenic |
| AACATGCTGAGAACCTTTGG+TGG | 0.602305 | 5.1:+52061602 | None:intergenic |
| CGTGTGAAGACGGAGGGCGG+CGG | 0.605804 | 5.1:+52061994 | None:intergenic |
| ATGCCAAGCCTTGTGACCCG+TGG | 0.606140 | 5.1:+52061478 | None:intergenic |
| GTCAACCGTGTGAAGACGGA+GGG | 0.609369 | 5.1:+52061988 | None:intergenic |
| GGAGGTCGACTTGTTGATAG+GGG | 0.612917 | 5.1:+52061963 | None:intergenic |
| ACAAAGTTGCTATATCACAA+AGG | 0.614008 | 5.1:+52062092 | None:intergenic |
| AATCCCCAACCGCTTCGTTG+AGG | 0.618266 | 5.1:+52061867 | None:intergenic |
| GTCATTAGCCCATGAGAACG+CGG | 0.627749 | 5.1:+52061805 | None:intergenic |
| CCTCAATGAATAAATCTATG+TGG | 0.629420 | 5.1:-52060337 | MS.gene21268:CDS |
| TAGATTCAACGCCTTTAGGG+AGG | 0.636738 | 5.1:+52061945 | None:intergenic |
| CGCAATGCTCCTCAACGAAG+CGG | 0.640494 | 5.1:-52061876 | MS.gene21268:CDS |
| TGGTGATGATTGTGACATGT+TGG | 0.640976 | 5.1:+52062056 | None:intergenic |
| CAACACTACGAGAAAACCAC+GGG | 0.646166 | 5.1:-52061494 | MS.gene21268:CDS |
| CTTGTGTAGTAAACCACCAA+AGG | 0.649958 | 5.1:-52061615 | MS.gene21268:CDS |
| GCCATTATGAATCTTCCAAG+TGG | 0.663209 | 5.1:+52061898 | None:intergenic |
| AGTCAACCGTGTGAAGACGG+AGG | 0.665100 | 5.1:+52061987 | None:intergenic |
| TCAGCAATGATACAATCCGG+TGG | 0.697559 | 5.1:+52061830 | None:intergenic |
| GGTGATGGGATCAGTCGTGG+AGG | 0.715828 | 5.1:+52061919 | None:intergenic |
| AAAGTTGCTATATCACAAAG+GGG | 0.716769 | 5.1:+52062094 | None:intergenic |
| CCAACACTACGAGAAAACCA+CGG | 0.724475 | 5.1:-52061495 | MS.gene21268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATAATCATAGATTT+AGG | - | chr5.1:52061965-52061984 | MS.gene21268:CDS | 15.0% |
| !! | AAGTAAATTATTTGTTCGAA+GGG | + | chr5.1:52060289-52060308 | None:intergenic | 20.0% |
| !! | ACTTTGAATATTATGGTATA+TGG | + | chr5.1:52061781-52061800 | None:intergenic | 20.0% |
| !! | ATATTATCATGATGAAGATT+TGG | + | chr5.1:52060357-52060376 | None:intergenic | 20.0% |
| !! | CTTTGAATATTATGGTATAT+GGG | + | chr5.1:52061780-52061799 | None:intergenic | 20.0% |
| !!! | ATATGTCGATAATATTGTTT+TGG | - | chr5.1:52061892-52061911 | MS.gene21268:CDS | 20.0% |
| ! | AAAAATGAAGTGATCATTTG+AGG | + | chr5.1:52061840-52061859 | None:intergenic | 25.0% |
| ! | AAAGAAGGGTTTCATAATTA+GGG | - | chr5.1:52060845-52060864 | MS.gene21268:intron | 25.0% |
| ! | AAGCATTAATGTTATGGATT+TGG | - | chr5.1:52061362-52061381 | MS.gene21268:intron | 25.0% |
| ! | AGCTAACAAATTATTATGAG+AGG | + | chr5.1:52061231-52061250 | None:intergenic | 25.0% |
| ! | ATAGTTGTTTATCAGAGAAA+TGG | + | chr5.1:52060689-52060708 | None:intergenic | 25.0% |
| ! | ATCCATTGAATGTTAAATTC+GGG | + | chr5.1:52060236-52060255 | None:intergenic | 25.0% |
| ! | CATGATTAATCAAAGGAATA+TGG | - | chr5.1:52061290-52061309 | MS.gene21268:intron | 25.0% |
| ! | GAAGTAAATTATTTGTTCGA+AGG | + | chr5.1:52060290-52060309 | None:intergenic | 25.0% |
| ! | GACTTATGATACTTACAAAT+TGG | + | chr5.1:52061735-52061754 | None:intergenic | 25.0% |
| ! | GATCCATTGAATGTTAAATT+CGG | + | chr5.1:52060237-52060256 | None:intergenic | 25.0% |
| ! | GATGACAACTTTGAATATTA+TGG | + | chr5.1:52061788-52061807 | None:intergenic | 25.0% |
| ! | TATTCCTTTGATTAATCATG+TGG | + | chr5.1:52061290-52061309 | None:intergenic | 25.0% |
| !!! | GATCACTTCATTTTTAGTTT+TGG | - | chr5.1:52061845-52061864 | MS.gene21268:CDS | 25.0% |
| !!! | TACAAGTAAAAAGAGCATTA+TGG | + | chr5.1:52061636-52061655 | None:intergenic | 25.0% |
| AAAGTTGCTATATCACAAAG+GGG | + | chr5.1:52059904-52059923 | None:intergenic | 30.0% | |
| AACAACTTTGTTGAACTTGA+TGG | - | chr5.1:52060465-52060484 | MS.gene21268:intron | 30.0% | |
| AAGAAGGGTTTCATAATTAG+GGG | - | chr5.1:52060846-52060865 | MS.gene21268:intron | 30.0% | |
| ACAAAGTTGCTATATCACAA+AGG | + | chr5.1:52059906-52059925 | None:intergenic | 30.0% | |
| AGCAGTATTATGCAAATCAA+AGG | - | chr5.1:52061599-52061618 | MS.gene21268:CDS | 30.0% | |
| ATCCCGAATTTAACATTCAA+TGG | - | chr5.1:52060231-52060250 | MS.gene21268:intron | 30.0% | |
| CAAACCACATGATTAATCAA+AGG | - | chr5.1:52061283-52061302 | MS.gene21268:intron | 30.0% | |
| CAAAGTTGCTATATCACAAA+GGG | + | chr5.1:52059905-52059924 | None:intergenic | 30.0% | |
| CCAAGAAAGTAGTAAATTGA+AGG | + | chr5.1:52061871-52061890 | None:intergenic | 30.0% | |
| CCACATAGATTTATTCATTG+AGG | + | chr5.1:52061661-52061680 | None:intergenic | 30.0% | |
| CCTCAATGAATAAATCTATG+TGG | - | chr5.1:52061658-52061677 | MS.gene21268:CDS | 30.0% | |
| CCTTCAATTTACTACTTTCT+TGG | - | chr5.1:52061868-52061887 | MS.gene21268:CDS | 30.0% | |
| GAAAGAAGGGTTTCATAATT+AGG | - | chr5.1:52060844-52060863 | MS.gene21268:intron | 30.0% | |
| GTATCATAAGTCCTTCTATA+TGG | - | chr5.1:52061743-52061762 | MS.gene21268:CDS | 30.0% | |
| ! | ATTGTTTGAGACCATATAGA+AGG | + | chr5.1:52061757-52061776 | None:intergenic | 30.0% |
| ! | ATTTTATCCTAAAGAGATCC+AGG | + | chr5.1:52061813-52061832 | None:intergenic | 30.0% |
| ! | GCATATTTCAATTTTCACTG+TGG | - | chr5.1:52061469-52061488 | MS.gene21268:CDS | 30.0% |
| ! | GTTTTACGAATAAAGGAAGT+TGG | + | chr5.1:52060549-52060568 | None:intergenic | 30.0% |
| ! | TCAGTTGTGTACATATGTTT+TGG | - | chr5.1:52060654-52060673 | MS.gene21268:intron | 30.0% |
| ! | TTGAACGGTTTTACGAATAA+AGG | + | chr5.1:52060556-52060575 | None:intergenic | 30.0% |
| !! | AAGCAGAAGCATTAATGTTA+TGG | - | chr5.1:52061356-52061375 | MS.gene21268:intron | 30.0% |
| !! | TTAACTTGTTAAGTCATGTC+TGG | - | chr5.1:52061937-52061956 | MS.gene21268:CDS | 30.0% |
| !!! | AAAAATGCTTTGCTGTTTTC+AGG | - | chr5.1:52061413-52061432 | MS.gene21268:CDS | 30.0% |
| AATGGTGTACAAATGGTAAC+GGG | - | chr5.1:52061063-52061082 | MS.gene21268:intron | 35.0% | |
| ACCACTTGGAAGATTCATAA+TGG | - | chr5.1:52060096-52060115 | MS.gene21268:intron | 35.0% | |
| ATAACAACAGTCCGAAGAAT+TGG | - | chr5.1:52061020-52061039 | MS.gene21268:intron | 35.0% | |
| ATGTGGTACTACTCTTTATC+TGG | - | chr5.1:52061675-52061694 | MS.gene21268:CDS | 35.0% | |
| ATTCAAAGTTGTCATCAACC+TGG | - | chr5.1:52061792-52061811 | MS.gene21268:CDS | 35.0% | |
| GAATCAGCAATGATACAATC+CGG | + | chr5.1:52060171-52060190 | None:intergenic | 35.0% | |
| GAATGGTGTACAAATGGTAA+CGG | - | chr5.1:52061062-52061081 | MS.gene21268:intron | 35.0% | |
| GAGAGAAACATTGGAAAGAA+GGG | - | chr5.1:52060831-52060850 | MS.gene21268:intron | 35.0% | |
| GCAAATATACAAGTCATGTC+TGG | - | chr5.1:52062026-52062045 | MS.gene21268:CDS | 35.0% | |
| GGAATGAAGTGAAGTTTCAA+TGG | + | chr5.1:52059856-52059875 | None:intergenic | 35.0% | |
| TCATAGATTCAACGCCTTTA+GGG | + | chr5.1:52060056-52060075 | None:intergenic | 35.0% | |
| TCGAAGAAGAGAAAGAAAAG+TGG | - | chr5.1:52060790-52060809 | MS.gene21268:intron | 35.0% | |
| ! | ATGAAGATTTGGAACGACAT+AGG | + | chr5.1:52060346-52060365 | None:intergenic | 35.0% |
| !!! | CTTTGCTGTTTTCAGGATTT+CGG | - | chr5.1:52061420-52061439 | MS.gene21268:CDS | 35.0% |
| AACTCAATTGTAGAGGCTGT+TGG | - | chr5.1:52060936-52060955 | MS.gene21268:intron | 40.0% | |
| AAGGTTCTCAGCATGTTCAT+AGG | - | chr5.1:52060399-52060418 | MS.gene21268:intron | 40.0% | |
| ACACGAGCTATTAAAGAAGG+TGG | - | chr5.1:52061203-52061222 | MS.gene21268:intron | 40.0% | |
| AGGGTTTCATAATTAGGGGT+TGG | - | chr5.1:52060850-52060869 | MS.gene21268:intron | 40.0% | |
| ATAACATAGAGAAGGCTGTG+AGG | - | chr5.1:52061111-52061130 | MS.gene21268:intron | 40.0% | |
| ATGAACATGCTGAGAACCTT+TGG | + | chr5.1:52060399-52060418 | None:intergenic | 40.0% | |
| ATGAATCTTCCAAGTGGTGA+TGG | + | chr5.1:52060094-52060113 | None:intergenic | 40.0% | |
| ATTGCGTTCCTTGAAGAAAG+TGG | - | chr5.1:52062126-52062145 | MS.gene21268:CDS | 40.0% | |
| CTACTTCCACTCCAATTCTT+CGG | + | chr5.1:52061034-52061053 | None:intergenic | 40.0% | |
| CTTCTCTGCTTTCTCTTGAA+CGG | + | chr5.1:52060571-52060590 | None:intergenic | 40.0% | |
| CTTGTGTAGTAAACCACCAA+AGG | - | chr5.1:52060380-52060399 | MS.gene21268:intron | 40.0% | |
| GAGCAGAGATAACATAGAGA+AGG | - | chr5.1:52061103-52061122 | MS.gene21268:intron | 40.0% | |
| GCCATTATGAATCTTCCAAG+TGG | + | chr5.1:52060100-52060119 | None:intergenic | 40.0% | |
| GCTACACGAGCTATTAAAGA+AGG | - | chr5.1:52061200-52061219 | MS.gene21268:intron | 40.0% | |
| GGAGAGAAACATTGGAAAGA+AGG | - | chr5.1:52060830-52060849 | MS.gene21268:intron | 40.0% | |
| GGATTTGAGGAGAGAAACAT+TGG | - | chr5.1:52060822-52060841 | MS.gene21268:intron | 40.0% | |
| GGGTTTCATAATTAGGGGTT+GGG | - | chr5.1:52060851-52060870 | MS.gene21268:intron | 40.0% | |
| GTCATAGATTCAACGCCTTT+AGG | + | chr5.1:52060057-52060076 | None:intergenic | 40.0% | |
| GTTCAAGAGAAAGCAGAGAA+GGG | - | chr5.1:52060570-52060589 | MS.gene21268:intron | 40.0% | |
| TCATCAACCTGGATCTCTTT+AGG | - | chr5.1:52061803-52061822 | MS.gene21268:CDS | 40.0% | |
| TCTTCTTTCCCTTTCTTCTC+AGG | + | chr5.1:52060765-52060784 | None:intergenic | 40.0% | |
| TGAATCTTCCAAGTGGTGAT+GGG | + | chr5.1:52060093-52060112 | None:intergenic | 40.0% | |
| TTTCGTTGAGAAGAATCCAC+CGG | - | chr5.1:52060149-52060168 | MS.gene21268:intron | 40.0% | |
| TTTCTCTCCTCAAATCCCTT+CGG | + | chr5.1:52060819-52060838 | None:intergenic | 40.0% | |
| TTTGGTAAGGGATTGAGCAT+TGG | + | chr5.1:52059971-52059990 | None:intergenic | 40.0% | |
| ! | AATTCGGGATTTGAAGCTTG+TGG | + | chr5.1:52060221-52060240 | None:intergenic | 40.0% |
| ! | ATGGTGTACAAATGGTAACG+GGG | - | chr5.1:52061064-52061083 | MS.gene21268:intron | 40.0% |
| ! | ATTCGGGATTTGAAGCTTGT+GGG | + | chr5.1:52060220-52060239 | None:intergenic | 40.0% |
| ! | CTACTCTTTATCTGGTGTCA+AGG | - | chr5.1:52061683-52061702 | MS.gene21268:CDS | 40.0% |
| ! | CTTTGGTGGTTTACTACACA+AGG | + | chr5.1:52060382-52060401 | None:intergenic | 40.0% |
| ! | GACACAGTGCTTAAAAGTAC+AGG | - | chr5.1:52060432-52060451 | MS.gene21268:intron | 40.0% |
| ! | GTAACGGAATGGTGTACAAA+TGG | - | chr5.1:52061056-52061075 | MS.gene21268:intron | 40.0% |
| ! | TGGTGATGATTGTGACATGT+TGG | + | chr5.1:52059942-52059961 | None:intergenic | 40.0% |
| ! | TTAGGCACACTCCATTTTGT+CGG | - | chr5.1:52061983-52062002 | MS.gene21268:CDS | 40.0% |
| ! | TTATCTGGTGTCAAGGTTCT+TGG | - | chr5.1:52061690-52061709 | MS.gene21268:CDS | 40.0% |
| !! | AAGGTTCTTGGTTCTGTTTC+AGG | - | chr5.1:52061702-52061721 | MS.gene21268:CDS | 40.0% |
| !! | GGATGAGAGAGTTTTGGTAA+GGG | + | chr5.1:52059983-52060002 | None:intergenic | 40.0% |
| AAAGAAAAGTGGCTGCCGAA+GGG | - | chr5.1:52060801-52060820 | MS.gene21268:intron | 45.0% | |
| AACAGTCCGAAGAATTGGAG+TGG | - | chr5.1:52061025-52061044 | MS.gene21268:intron | 45.0% | |
| AACATGCTGAGAACCTTTGG+TGG | + | chr5.1:52060396-52060415 | None:intergenic | 45.0% | |
| AAGAAAGTGGTCAGCTAGCT+AGG | - | chr5.1:52062139-52062158 | MS.gene21268:CDS | 45.0% | |
| ATCAGGTCACCCATTCGTAT+GGG | - | chr5.1:52060734-52060753 | MS.gene21268:intron | 45.0% | |
| ATGTGTCCAGATGCTGGATA+CGG | + | chr5.1:52059877-52059896 | None:intergenic | 45.0% | |
| CAACACTACGAGAAAACCAC+GGG | - | chr5.1:52060501-52060520 | MS.gene21268:intron | 45.0% | |
| CAGGAACAACCCATACGAAT+GGG | + | chr5.1:52060746-52060765 | None:intergenic | 45.0% | |
| CCAACACTACGAGAAAACCA+CGG | - | chr5.1:52060500-52060519 | MS.gene21268:intron | 45.0% | |
| CGAAGAATTGGAGTGGAAGT+AGG | - | chr5.1:52061032-52061051 | MS.gene21268:intron | 45.0% | |
| CGTTCAAGAGAAAGCAGAGA+AGG | - | chr5.1:52060569-52060588 | MS.gene21268:intron | 45.0% | |
| CTAGCTGACCACTTTCTTCA+AGG | + | chr5.1:52062137-52062156 | None:intergenic | 45.0% | |
| CTGAAGTGATCTGCATGACA+AGG | + | chr5.1:52060987-52061006 | None:intergenic | 45.0% | |
| GATTTCTGACACATTGTGGG+GGG | - | chr5.1:52060913-52060932 | MS.gene21268:intron | 45.0% | |
| GCTCAATATCAGGACTTGTG+GGG | + | chr5.1:52060877-52060896 | None:intergenic | 45.0% | |
| GGATTTCTGACACATTGTGG+GGG | - | chr5.1:52060912-52060931 | MS.gene21268:intron | 45.0% | |
| GGCTCAATATCAGGACTTGT+GGG | + | chr5.1:52060878-52060897 | None:intergenic | 45.0% | |
| GGGATTTCTGACACATTGTG+GGG | - | chr5.1:52060911-52060930 | MS.gene21268:intron | 45.0% | |
| GGGGATTTCTGACACATTGT+GGG | - | chr5.1:52060910-52060929 | MS.gene21268:intron | 45.0% | |
| GGGTTGTTCCTGAGAAGAAA+GGG | - | chr5.1:52060754-52060773 | MS.gene21268:intron | 45.0% | |
| GTTGTGATTTGAGCCAGTTC+AGG | + | chr5.1:52060626-52060645 | None:intergenic | 45.0% | |
| TAACGGGGAGAGAAAGAAGT+TGG | - | chr5.1:52061079-52061098 | MS.gene21268:intron | 45.0% | |
| TCAGCAATGATACAATCCGG+TGG | + | chr5.1:52060168-52060187 | None:intergenic | 45.0% | |
| TCAGGAACAACCCATACGAA+TGG | + | chr5.1:52060747-52060766 | None:intergenic | 45.0% | |
| TGACAAGGCCACGTTATCAT+TGG | + | chr5.1:52060972-52060991 | None:intergenic | 45.0% | |
| TGCTTCTGCTTGACGAAACA+AGG | + | chr5.1:52061347-52061366 | None:intergenic | 45.0% | |
| TGGAGTGGAAGTAGGTGTAA+CGG | - | chr5.1:52061040-52061059 | MS.gene21268:intron | 45.0% | |
| TGGCTCAATATCAGGACTTG+TGG | + | chr5.1:52060879-52060898 | None:intergenic | 45.0% | |
| TGGGTTGTTCCTGAGAAGAA+AGG | - | chr5.1:52060753-52060772 | MS.gene21268:intron | 45.0% | |
| TTCATTCCGTATCCAGCATC+TGG | - | chr5.1:52059868-52059887 | MS.gene21268:CDS | 45.0% | |
| ! | GCAACTTTGTTTGCATCACG+TGG | - | chr5.1:52059916-52059935 | MS.gene21268:CDS | 45.0% |
| ! | GTTCTCATGGGCTAATGACT+TGG | - | chr5.1:52060194-52060213 | MS.gene21268:intron | 45.0% |
| ! | TAGATTCAACGCCTTTAGGG+AGG | + | chr5.1:52060053-52060072 | None:intergenic | 45.0% |
| ! | TAGGCACACTCCATTTTGTC+GGG | - | chr5.1:52061984-52062003 | MS.gene21268:CDS | 45.0% |
| ! | TGGAAGTAGGTGTAACGGAA+TGG | - | chr5.1:52061045-52061064 | MS.gene21268:intron | 45.0% |
| !! | CGGATGAGAGAGTTTTGGTA+AGG | + | chr5.1:52059984-52060003 | None:intergenic | 45.0% |
| !! | GTAAGGGATTGAGCATTGGA+GGG | + | chr5.1:52059967-52059986 | None:intergenic | 45.0% |
| AATTGTAGAGGCTGTTGGCG+CGG | - | chr5.1:52060941-52060960 | MS.gene21268:intron | 50.0% | |
| AGACAACGTGCTCGAGAGTT+AGG | - | chr5.1:52061170-52061189 | MS.gene21268:intron | 50.0% | |
| CAACAAGTCGACCTCCCTAA+AGG | - | chr5.1:52060039-52060058 | MS.gene21268:intron | 50.0% | |
| CATCAGGTCACCCATTCGTA+TGG | - | chr5.1:52060733-52060752 | MS.gene21268:intron | 50.0% | |
| GAAAGAAAAGTGGCTGCCGA+AGG | - | chr5.1:52060800-52060819 | MS.gene21268:intron | 50.0% | |
| GAAGGCTGTGAGGAGATTGA+TGG | - | chr5.1:52061121-52061140 | MS.gene21268:intron | 50.0% | |
| GCAGTTTGACCCCGACAAAA+TGG | + | chr5.1:52061997-52062016 | None:intergenic | 50.0% | |
| GCTGTGAGGAGATTGATGGA+CGG | - | chr5.1:52061125-52061144 | MS.gene21268:intron | 50.0% | |
| GGAAGTCAACCGTGTGAAGA+CGG | + | chr5.1:52060014-52060033 | None:intergenic | 50.0% | |
| GGGGGATTTCTGACACATTG+TGG | - | chr5.1:52060909-52060928 | MS.gene21268:intron | 50.0% | |
| GTCATTAGCCCATGAGAACG+CGG | + | chr5.1:52060193-52060212 | None:intergenic | 50.0% | |
| TGCTCGAGAGTTAGGAGAGA+AGG | - | chr5.1:52061178-52061197 | MS.gene21268:intron | 50.0% | |
| TGGGGGGAACTCAATTGTAG+AGG | - | chr5.1:52060929-52060948 | MS.gene21268:intron | 50.0% | |
| ! | AGGCACACTCCATTTTGTCG+GGG | - | chr5.1:52061985-52062004 | MS.gene21268:CDS | 50.0% |
| ! | CCGTGGTTTTCTCGTAGTGT+TGG | + | chr5.1:52060503-52060522 | None:intergenic | 50.0% |
| ! | CGGGTGTTCCAATGATAACG+TGG | - | chr5.1:52060961-52060980 | MS.gene21268:intron | 50.0% |
| !! | AGGGAGGTCGACTTGTTGAT+AGG | + | chr5.1:52060037-52060056 | None:intergenic | 50.0% |
| !! | GGAGGTCGACTTGTTGATAG+GGG | + | chr5.1:52060035-52060054 | None:intergenic | 50.0% |
| !! | GGGAGGTCGACTTGTTGATA+GGG | + | chr5.1:52060036-52060055 | None:intergenic | 50.0% |
| !! | GGTAAGGGATTGAGCATTGG+AGG | + | chr5.1:52059968-52059987 | None:intergenic | 50.0% |
| !! | TGCTGATTCCGCGTTCTCAT+GGG | - | chr5.1:52060182-52060201 | MS.gene21268:intron | 50.0% |
| !! | TTGCTGATTCCGCGTTCTCA+TGG | - | chr5.1:52060181-52060200 | MS.gene21268:intron | 50.0% |
| AAACCACGGGTCACAAGGCT+TGG | - | chr5.1:52060514-52060533 | MS.gene21268:intron | 55.0% | |
| AATCCCCAACCGCTTCGTTG+AGG | + | chr5.1:52060131-52060150 | None:intergenic | 55.0% | |
| AGTCAACCGTGTGAAGACGG+AGG | + | chr5.1:52060011-52060030 | None:intergenic | 55.0% | |
| ATATTGAGCCACCCTGCGGT+AGG | - | chr5.1:52060888-52060907 | MS.gene21268:intron | 55.0% | |
| ATGCTCCTCAACGAAGCGGT+TGG | - | chr5.1:52060123-52060142 | MS.gene21268:intron | 55.0% | |
| ATTGTAGAGGCTGTTGGCGC+GGG | - | chr5.1:52060942-52060961 | MS.gene21268:intron | 55.0% | |
| CCTGATATTGAGCCACCCTG+CGG | - | chr5.1:52060884-52060903 | MS.gene21268:intron | 55.0% | |
| CGACTGATCCCATCACCACT+TGG | - | chr5.1:52060082-52060101 | MS.gene21268:intron | 55.0% | |
| CGAGAAAACCACGGGTCACA+AGG | - | chr5.1:52060509-52060528 | MS.gene21268:intron | 55.0% | |
| CGCAATGCTCCTCAACGAAG+CGG | - | chr5.1:52060119-52060138 | MS.gene21268:intron | 55.0% | |
| GGCATCATGTGTCCAGATGC+TGG | + | chr5.1:52059883-52059902 | None:intergenic | 55.0% | |
| GGTCACAAGGCTTGGCATCT+TGG | - | chr5.1:52060522-52060541 | MS.gene21268:intron | 55.0% | |
| GTCAACCGTGTGAAGACGGA+GGG | + | chr5.1:52060010-52060029 | None:intergenic | 55.0% | |
| TATTGAGCCACCCTGCGGTA+GGG | - | chr5.1:52060889-52060908 | MS.gene21268:intron | 55.0% | |
| TCAGAAATCCCCCTACCGCA+GGG | + | chr5.1:52060902-52060921 | None:intergenic | 55.0% | |
| TGCTCCTCAACGAAGCGGTT+GGG | - | chr5.1:52060124-52060143 | MS.gene21268:intron | 55.0% | |
| ! | GTGAGGAGATTGATGGACGG+TGG | - | chr5.1:52061128-52061147 | MS.gene21268:intron | 55.0% |
| !! | AGTGGTGATGGGATCAGTCG+TGG | + | chr5.1:52060082-52060101 | None:intergenic | 55.0% |
| !! | GCGTGCGCAATAGAAGCATC+AGG | - | chr5.1:52060717-52060736 | MS.gene21268:intron | 55.0% |
| !! | GGATTGAGCATTGGAGGGAG+TGG | + | chr5.1:52059962-52059981 | None:intergenic | 55.0% |
| AACCGTGTGAAGACGGAGGG+CGG | + | chr5.1:52060007-52060026 | None:intergenic | 60.0% | |
| ATTGAGCCACCCTGCGGTAG+GGG | - | chr5.1:52060890-52060909 | MS.gene21268:intron | 60.0% | |
| CCGCAGGGTGGCTCAATATC+AGG | + | chr5.1:52060887-52060906 | None:intergenic | 60.0% | |
| GCTCCTCAACGAAGCGGTTG+GGG | - | chr5.1:52060125-52060144 | MS.gene21268:intron | 60.0% | |
| GTCAGAAATCCCCCTACCGC+AGG | + | chr5.1:52060903-52060922 | None:intergenic | 60.0% | |
| GTGGCTGCCGAAGGGATTTG+AGG | - | chr5.1:52060809-52060828 | MS.gene21268:intron | 60.0% | |
| ! | ATGCCAAGCCTTGTGACCCG+TGG | + | chr5.1:52060520-52060539 | None:intergenic | 60.0% |
| ! | GGCGGCGGATGAGAGAGTTT+TGG | + | chr5.1:52059989-52060008 | None:intergenic | 60.0% |
| !! | GGTGATGGGATCAGTCGTGG+AGG | + | chr5.1:52060079-52060098 | None:intergenic | 60.0% |
| GAAATCCCCCTACCGCAGGG+TGG | + | chr5.1:52060899-52060918 | None:intergenic | 65.0% | |
| GCGAGCACGAGTGCCTGAAC+TGG | - | chr5.1:52060610-52060629 | MS.gene21268:intron | 65.0% | |
| TTGAGCCACCCTGCGGTAGG+GGG | - | chr5.1:52060891-52060910 | MS.gene21268:intron | 65.0% | |
| CGCCGCCCTCCGTCTTCACA+CGG | - | chr5.1:52060002-52060021 | MS.gene21268:intron | 70.0% | |
| CGTGTGAAGACGGAGGGCGG+CGG | + | chr5.1:52060004-52060023 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52059829 | 52062188 | 52059829 | ID=MS.gene21268 |
| chr5.1 | mRNA | 52059829 | 52062188 | 52059829 | ID=MS.gene21268.t1;Parent=MS.gene21268 |
| chr5.1 | exon | 52061412 | 52062188 | 52061412 | ID=MS.gene21268.t1.exon1;Parent=MS.gene21268.t1 |
| chr5.1 | CDS | 52061412 | 52062188 | 52061412 | ID=cds.MS.gene21268.t1;Parent=MS.gene21268.t1 |
| chr5.1 | exon | 52060279 | 52060360 | 52060279 | ID=MS.gene21268.t1.exon2;Parent=MS.gene21268.t1 |
| chr5.1 | CDS | 52060279 | 52060360 | 52060279 | ID=cds.MS.gene21268.t1;Parent=MS.gene21268.t1 |
| chr5.1 | exon | 52059829 | 52059947 | 52059829 | ID=MS.gene21268.t1.exon3;Parent=MS.gene21268.t1 |
| chr5.1 | CDS | 52059829 | 52059947 | 52059829 | ID=cds.MS.gene21268.t1;Parent=MS.gene21268.t1 |
| Gene Sequence |
| Protein sequence |
