Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49263.t1 | XP_003608836.1 | 98.8 | 432 | 5 | 0 | 1 | 432 | 1 | 432 | 5.40E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49263.t1 | Q8LBB2 | 71.0 | 410 | 110 | 2 | 24 | 432 | 23 | 424 | 1.6e-164 | 580.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49263.t1 | G7JLE4 | 98.8 | 432 | 5 | 0 | 1 | 432 | 1 | 432 | 3.9e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049236 | MS.gene49263 | 0.814791 | 1.29E-51 | -1.69E-46 |
| MS.gene050325 | MS.gene49263 | 0.813724 | 2.21E-51 | -1.69E-46 |
| MS.gene050327 | MS.gene49263 | 0.82366 | 1.23E-53 | -1.69E-46 |
| MS.gene050380 | MS.gene49263 | 0.837072 | 6.45E-57 | -1.69E-46 |
| MS.gene051113 | MS.gene49263 | 0.831279 | 1.83E-55 | -1.69E-46 |
| MS.gene051387 | MS.gene49263 | -0.823646 | 1.24E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene49263 | -0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene053018 | MS.gene49263 | -0.814202 | 1.74E-51 | -1.69E-46 |
| MS.gene053505 | MS.gene49263 | -0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene053562 | MS.gene49263 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene054003 | MS.gene49263 | -0.834915 | 2.27E-56 | -1.69E-46 |
| MS.gene054196 | MS.gene49263 | -0.801061 | 1.08E-48 | -1.69E-46 |
| MS.gene054447 | MS.gene49263 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene054486 | MS.gene49263 | -0.848997 | 4.29E-60 | -1.69E-46 |
| MS.gene055486 | MS.gene49263 | -0.805152 | 1.53E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene49263 | -0.815485 | 9.02E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene49263 | -0.821123 | 4.77E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene49263 | -0.817579 | 3.06E-52 | -1.69E-46 |
| MS.gene056448 | MS.gene49263 | -0.834802 | 2.43E-56 | -1.69E-46 |
| MS.gene057173 | MS.gene49263 | 0.881374 | 2.53E-70 | -1.69E-46 |
| MS.gene057506 | MS.gene49263 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene49263 | -0.820485 | 6.69E-53 | -1.69E-46 |
| MS.gene058726 | MS.gene49263 | 0.813762 | 2.17E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene49263 | -0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene49263 | -0.802207 | 6.26E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene49263 | -0.833134 | 6.35E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene49263 | -0.837883 | 4.00E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49263.t1 | MTR_4g103550 | 98.843 | 432 | 5 | 0 | 1 | 432 | 1 | 432 | 0.0 | 885 |
| MS.gene49263.t1 | MTR_4g103550 | 97.917 | 336 | 7 | 0 | 1 | 336 | 1 | 336 | 0.0 | 681 |
| MS.gene49263.t1 | MTR_5g038570 | 35.556 | 405 | 225 | 4 | 47 | 420 | 40 | 439 | 8.94e-88 | 274 |
| MS.gene49263.t1 | MTR_3g116850 | 22.739 | 387 | 251 | 6 | 40 | 405 | 22 | 381 | 1.54e-29 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49263.t1 | AT3G48530 | 72.439 | 410 | 104 | 2 | 24 | 432 | 23 | 424 | 0.0 | 613 |
| MS.gene49263.t1 | AT1G69800 | 37.221 | 403 | 218 | 4 | 45 | 416 | 35 | 433 | 3.09e-84 | 265 |
| MS.gene49263.t1 | AT1G69800 | 37.221 | 403 | 218 | 4 | 45 | 416 | 64 | 462 | 5.39e-84 | 265 |
| MS.gene49263.t1 | AT1G69800 | 35.455 | 330 | 183 | 2 | 45 | 344 | 35 | 364 | 1.57e-64 | 212 |
Find 112 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAACCCCACGGCTATTT+TGG | 0.161714 | 8.2:+20705141 | MS.gene49263:CDS |
| CTATAATCATGATAGATTTC+TGG | 0.217599 | 8.2:-20704631 | None:intergenic |
| GGATCTGCAGCGACAACTTC+TGG | 0.254340 | 8.2:+20703830 | MS.gene49263:CDS |
| GGATGAGAGTTGAAGATCTA+TGG | 0.266856 | 8.2:+20702807 | MS.gene49263:CDS |
| ATGGGCTCCGTTTCTTGCTT+TGG | 0.280669 | 8.2:+20704027 | MS.gene49263:CDS |
| TTCAACTCTCATCCCAAGTT+TGG | 0.288163 | 8.2:-20702798 | None:intergenic |
| CAGAAATCTATCATGATTAT+AGG | 0.291433 | 8.2:+20704632 | MS.gene49263:CDS |
| TTAGTGTGATTAGTCCTTCA+AGG | 0.332347 | 8.2:-20705095 | None:intergenic |
| GAGAAAAGAAGAGGGAATAA+TGG | 0.336001 | 8.2:+20702736 | MS.gene49263:CDS |
| ACTTCAATGGTTTGAAAGTT+GGG | 0.342478 | 8.2:+20704195 | MS.gene49263:CDS |
| CAAGCATTAAGTTTGTCATT+AGG | 0.345513 | 8.2:-20702854 | None:intergenic |
| CTCATCCCAAGTTTGGCTTC+TGG | 0.357377 | 8.2:-20702791 | None:intergenic |
| CACACCTTGATGATCTGTTT+TGG | 0.359578 | 8.2:-20704259 | None:intergenic |
| AAACAGGTTCGAGATATTTC+AGG | 0.361042 | 8.2:+20703995 | MS.gene49263:intron |
| GACTTCAATGGTTTGAAAGT+TGG | 0.375366 | 8.2:+20704194 | MS.gene49263:CDS |
| TTGACAAAGAGCAAATTCAT+AGG | 0.378131 | 8.2:+20705046 | MS.gene49263:CDS |
| TATAATCATGATAGATTTCT+GGG | 0.381852 | 8.2:-20704630 | None:intergenic |
| TCATCTCTTTAAATGCTTGA+AGG | 0.382534 | 8.2:-20704510 | None:intergenic |
| ATCGGAATAGTTGAGTTTGC+TGG | 0.385140 | 8.2:+20703356 | MS.gene49263:CDS |
| TCAATCCAACTAGCATCTTC+AGG | 0.389432 | 8.2:-20703326 | None:intergenic |
| GTGAATTCATTACATGCAAA+AGG | 0.403501 | 8.2:+20704992 | MS.gene49263:CDS |
| TCTTTAAATGCTTGAAGGAC+TGG | 0.413459 | 8.2:-20704505 | None:intergenic |
| AGTTTGGCTTCTGGACTCCT+TGG | 0.419299 | 8.2:-20702782 | None:intergenic |
| GGCAAAGGAAAAGCAGAAAC+AGG | 0.426999 | 8.2:-20702890 | None:intergenic |
| TAATGAATTCACTTGACATT+GGG | 0.434316 | 8.2:-20704981 | None:intergenic |
| CAGAATGTGCCGGACTTCAA+TGG | 0.434447 | 8.2:+20704182 | MS.gene49263:CDS |
| TCCCTCTACCTGCTAATAGC+AGG | 0.435441 | 8.2:+20705184 | MS.gene49263:CDS |
| AGTTTGCTGGAATTGTTGTA+TGG | 0.438748 | 8.2:+20703369 | MS.gene49263:CDS |
| GGCTGAAGCTGTGAAAATAT+TGG | 0.439718 | 8.2:+20703259 | MS.gene49263:CDS |
| GTTGGAGTGGATGGACTCCT+AGG | 0.442102 | 8.2:-20703737 | None:intergenic |
| AGGAGTCCAGAAGCCAAACT+TGG | 0.448058 | 8.2:+20702785 | MS.gene49263:CDS |
| TTGGAGTGGATGGACTCCTA+GGG | 0.452562 | 8.2:-20703736 | None:intergenic |
| GCTCGAGAACTCGAAGCCTT+AGG | 0.456172 | 8.2:+20703803 | MS.gene49263:CDS |
| CTTGCACTGGTTGGAGTGGA+TGG | 0.469031 | 8.2:-20703746 | None:intergenic |
| AATAAAATCAGATGCTACCT+TGG | 0.469606 | 8.2:+20703238 | MS.gene49263:CDS |
| GACCTCCGTTAGAAGCTACT+TGG | 0.479934 | 8.2:+20704939 | MS.gene49263:CDS |
| AGTAGCTTCTAACGGAGGTC+AGG | 0.486459 | 8.2:-20704936 | None:intergenic |
| GAGTGTTCCTGTGGTAGACT+TGG | 0.493238 | 8.2:+20704105 | MS.gene49263:CDS |
| GCTATTGCAGCCGCAGCAAA+CGG | 0.494235 | 8.2:+20703770 | MS.gene49263:CDS |
| GAACTCGAAGCCTTAGGCCT+CGG | 0.497616 | 8.2:+20703809 | MS.gene49263:CDS |
| GACGATGATGGGAACCTTGA+AGG | 0.502311 | 8.2:+20705081 | MS.gene49263:CDS |
| CGCTGCAGATCCGAGGCCTA+AGG | 0.503192 | 8.2:-20703819 | None:intergenic |
| GTCTATGTTGTGGACGATGA+TGG | 0.505650 | 8.2:+20705069 | MS.gene49263:CDS |
| CCCTCTACCTGCTAATAGCA+GGG | 0.507334 | 8.2:+20705185 | MS.gene49263:CDS |
| GCAATAGCACTTGCACTGGT+TGG | 0.511188 | 8.2:-20703755 | None:intergenic |
| TGTTAAACCCTGCTATTAGC+AGG | 0.522009 | 8.2:-20705192 | None:intergenic |
| GGTGCATCAACATCCACAAC+AGG | 0.523558 | 8.2:-20703305 | None:intergenic |
| ACCAACATCAGATAGTTCCT+TGG | 0.525523 | 8.2:-20704221 | None:intergenic |
| ACCCGCCGTGATTCATATGT+TGG | 0.528785 | 8.2:+20704159 | MS.gene49263:CDS |
| AACAGGTTCGAGATATTTCA+GGG | 0.530914 | 8.2:+20703996 | MS.gene49263:intron |
| ATGCACCTGAAGATGCTAGT+TGG | 0.531504 | 8.2:+20703321 | MS.gene49263:CDS |
| CTTCAATGGTTTGAAAGTTG+GGG | 0.531932 | 8.2:+20704196 | MS.gene49263:CDS |
| ACTTTCAAACCATTGAAGTC+CGG | 0.536216 | 8.2:-20704191 | None:intergenic |
| TGAATTCATTACATGCAAAA+GGG | 0.536868 | 8.2:+20704993 | MS.gene49263:CDS |
| CCTGTGGTAGACTTGGGTGC+TGG | 0.537100 | 8.2:+20704112 | MS.gene49263:CDS |
| ACCCTGCTATTAGCAGGTAG+AGG | 0.541141 | 8.2:-20705186 | None:intergenic |
| AAACTACCTTGGTTTGAAGC+AGG | 0.544975 | 8.2:-20702911 | None:intergenic |
| TTCAAGCATTTAAAGAGATG+AGG | 0.552251 | 8.2:+20704512 | MS.gene49263:CDS |
| GTAATGAATTCACTTGACAT+TGG | 0.553550 | 8.2:-20704982 | None:intergenic |
| GATGAGAGTTGAAGATCTAT+GGG | 0.553732 | 8.2:+20702808 | MS.gene49263:CDS |
| GATCTCTCCAAAGCAAGAAA+CGG | 0.557531 | 8.2:-20704034 | None:intergenic |
| CTTCTCCAAGTAGCTTCTAA+CGG | 0.558499 | 8.2:-20704944 | None:intergenic |
| CCTTGGTTTGAAGCAGGCAA+AGG | 0.559732 | 8.2:-20702905 | None:intergenic |
| AGAGGTGGCACCACGGCAGT+TGG | 0.561682 | 8.2:+20704568 | MS.gene49263:CDS |
| CCCTGCTATTAGCAGGTAGA+GGG | 0.561914 | 8.2:-20705185 | None:intergenic |
| TCACAGAACAATTACAGTGA+AGG | 0.562168 | 8.2:+20704909 | MS.gene49263:intron |
| GTGGATGGACTCCTAGGGGA+TGG | 0.565217 | 8.2:-20703731 | None:intergenic |
| ACCAAGGAACTATCTGATGT+TGG | 0.572252 | 8.2:+20704220 | MS.gene49263:CDS |
| CATATGTTGGCAGAATGTGC+CGG | 0.573538 | 8.2:+20704172 | MS.gene49263:CDS |
| GGCTGCAATAGCACTTGCAC+TGG | 0.573713 | 8.2:-20703759 | None:intergenic |
| TATTCTGAGTGCACCTGTTG+TGG | 0.573842 | 8.2:+20703292 | MS.gene49263:CDS |
| CTTAGAAAGCAGCAAGAGCA+TGG | 0.576526 | 8.2:-20704071 | None:intergenic |
| CACAGAGAGAGAAAAGAAGA+GGG | 0.578839 | 8.2:+20702728 | MS.gene49263:CDS |
| ATATTTCAGGGACATTCCGA+TGG | 0.579686 | 8.2:+20704008 | MS.gene49263:CDS |
| AATTCATAGGGTCTATGTTG+TGG | 0.580570 | 8.2:+20705059 | MS.gene49263:CDS |
| CCTTTGCCTGCTTCAAACCA+AGG | 0.581002 | 8.2:+20702905 | MS.gene49263:CDS |
| ACACAGAGAGAGAAAAGAAG+AGG | 0.584820 | 8.2:+20702727 | MS.gene49263:CDS |
| GTTTGAAAGTTGGGGAACCA+AGG | 0.585965 | 8.2:+20704204 | MS.gene49263:CDS |
| TGACAAAGAGCAAATTCATA+GGG | 0.586419 | 8.2:+20705047 | MS.gene49263:CDS |
| GAAATCACCAAAATAGCCGT+GGG | 0.590135 | 8.2:-20705148 | None:intergenic |
| GATGGACTCCTAGGGGATGG+AGG | 0.592826 | 8.2:-20703728 | None:intergenic |
| AGAAATCACCAAAATAGCCG+TGG | 0.598829 | 8.2:-20705149 | None:intergenic |
| AGCACTTGCACTGGTTGGAG+TGG | 0.599023 | 8.2:-20703750 | None:intergenic |
| GGGGTGCCTGTAATCAAAAG+AGG | 0.599309 | 8.2:+20704550 | MS.gene49263:CDS |
| GGAGTCCAGAAGCCAAACTT+GGG | 0.600493 | 8.2:+20702786 | MS.gene49263:CDS |
| GCCAACATATGAATCACGGC+GGG | 0.600876 | 8.2:-20704160 | None:intergenic |
| AGTCTGAACCTCCATCCCCT+AGG | 0.601038 | 8.2:+20703720 | MS.gene49263:intron |
| AGAAGAGGGAATAATGGCAA+TGG | 0.605880 | 8.2:+20702742 | MS.gene49263:CDS |
| TCTATGTTGTGGACGATGAT+GGG | 0.613189 | 8.2:+20705070 | MS.gene49263:CDS |
| AAGCAAGAAACGGAGCCCAT+CGG | 0.613620 | 8.2:-20704024 | None:intergenic |
| AGATCTATGGGATGTTCAAG+AGG | 0.614406 | 8.2:+20702820 | MS.gene49263:CDS |
| CACTAAGAGATATCATCTCA+AGG | 0.615021 | 8.2:+20705112 | MS.gene49263:CDS |
| TTCTGCCAACATATGAATCA+CGG | 0.617203 | 8.2:-20704164 | None:intergenic |
| AGTGTTCCTGTGGTAGACTT+GGG | 0.619646 | 8.2:+20704106 | MS.gene49263:CDS |
| CTACAATGAGAGAGATGCCA+AGG | 0.623153 | 8.2:+20702765 | MS.gene49263:CDS |
| CCAGCACCCAAGTCTACCAC+AGG | 0.626540 | 8.2:-20704112 | None:intergenic |
| AAGTTGTCGCTGCAGATCCG+AGG | 0.626836 | 8.2:-20703826 | None:intergenic |
| AGTTGGATTGATAGATACAT+CGG | 0.633207 | 8.2:+20703338 | MS.gene49263:CDS |
| TATTTCAGGGACATTCCGAT+GGG | 0.633257 | 8.2:+20704009 | MS.gene49263:CDS |
| AAAAGTATTTCCGTTTGCTG+CGG | 0.635232 | 8.2:-20703780 | None:intergenic |
| CAAAATGAAGAGTGTTCCTG+TGG | 0.635403 | 8.2:+20704096 | MS.gene49263:CDS |
| TGGAGTGGATGGACTCCTAG+GGG | 0.642969 | 8.2:-20703735 | None:intergenic |
| GTGCCTGTAATCAAAAGAGG+TGG | 0.647223 | 8.2:+20704553 | MS.gene49263:CDS |
| GCTTATATTACCAACTGCCG+TGG | 0.652654 | 8.2:-20704578 | None:intergenic |
| GACGCCAAAACAGATCATCA+AGG | 0.655091 | 8.2:+20704255 | MS.gene49263:CDS |
| TGAACTTTATAAGAACACCA+AGG | 0.657415 | 8.2:+20703880 | MS.gene49263:CDS |
| CTCCAAGTAGCTTCTAACGG+AGG | 0.681992 | 8.2:-20704941 | None:intergenic |
| AGGCTAGTACATGAACCCCA+CGG | 0.706623 | 8.2:+20705132 | MS.gene49263:CDS |
| ATAATCATGATAGATTTCTG+GGG | 0.708208 | 8.2:-20704629 | None:intergenic |
| TGCCAACATATGAATCACGG+CGG | 0.717560 | 8.2:-20704161 | None:intergenic |
| AATCAAAAGAGGTGGCACCA+CGG | 0.732628 | 8.2:+20704561 | MS.gene49263:CDS |
| AAATCACCAAAATAGCCGTG+GGG | 0.760400 | 8.2:-20705147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATCATGATAGATTTCT+GGG | - | chr8.2:20704633-20704652 | None:intergenic | 20.0% |
| !!! | ATTTTGCAAAATTTACATCA+TGG | + | chr8.2:20703067-20703086 | MS.gene49263:intron | 20.0% |
| !!! | TTAATACATGTACTTTTTGT+TGG | + | chr8.2:20703572-20703591 | MS.gene49263:intron | 20.0% |
| ! | AACATTTCTCAGTAAAATCA+AGG | - | chr8.2:20704706-20704725 | None:intergenic | 25.0% |
| ! | ACACAAAATAACACATCAAT+TGG | - | chr8.2:20703154-20703173 | None:intergenic | 25.0% |
| ! | AGAAGGATGAATTTAATACA+TGG | + | chr8.2:20703596-20703615 | MS.gene49263:intron | 25.0% |
| ! | ATAATCATGATAGATTTCTG+GGG | - | chr8.2:20704632-20704651 | None:intergenic | 25.0% |
| ! | ATGAAAATTATGTGCATGTT+TGG | + | chr8.2:20703005-20703024 | MS.gene49263:intron | 25.0% |
| ! | CAGAAATCTATCATGATTAT+AGG | + | chr8.2:20704632-20704651 | MS.gene49263:CDS | 25.0% |
| ! | CTATAATCATGATAGATTTC+TGG | - | chr8.2:20704634-20704653 | None:intergenic | 25.0% |
| ! | TAATGAATTCACTTGACATT+GGG | - | chr8.2:20704984-20705003 | None:intergenic | 25.0% |
| ! | TCACTTTCAGAATAAAAATG+AGG | + | chr8.2:20703439-20703458 | MS.gene49263:intron | 25.0% |
| ! | TGAATTCATTACATGCAAAA+GGG | + | chr8.2:20704993-20705012 | MS.gene49263:CDS | 25.0% |
| ! | TTTCATTACTTCATACTCAT+TGG | + | chr8.2:20704874-20704893 | MS.gene49263:intron | 25.0% |
| !! | TGGATTATTTCATTCTTTTC+AGG | + | chr8.2:20704468-20704487 | MS.gene49263:intron | 25.0% |
| !!! | TATTTTGGTGATTTCTTTGA+TGG | + | chr8.2:20705156-20705175 | MS.gene49263:CDS | 25.0% |
| !!! | TGTGTGTGTATGTTTTTTTT+AGG | + | chr8.2:20703169-20703188 | MS.gene49263:intron | 25.0% |
| AAGCTTACTTTACTTGAAAG+GGG | - | chr8.2:20704425-20704444 | None:intergenic | 30.0% | |
| AATAAAATCAGATGCTACCT+TGG | + | chr8.2:20703238-20703257 | MS.gene49263:CDS | 30.0% | |
| AATACAAACTCATTAGTAGC+TGG | - | chr8.2:20703947-20703966 | None:intergenic | 30.0% | |
| ACAAGCTTACTTTACTTGAA+AGG | - | chr8.2:20704427-20704446 | None:intergenic | 30.0% | |
| ACTTCAATGGTTTGAAAGTT+GGG | + | chr8.2:20704195-20704214 | MS.gene49263:CDS | 30.0% | |
| AGTTGGATTGATAGATACAT+CGG | + | chr8.2:20703338-20703357 | MS.gene49263:CDS | 30.0% | |
| ATATACACACTAAACTACCT+TGG | - | chr8.2:20702925-20702944 | None:intergenic | 30.0% | |
| CAAGCATTAAGTTTGTCATT+AGG | - | chr8.2:20702857-20702876 | None:intergenic | 30.0% | |
| CAAGCTTACTTTACTTGAAA+GGG | - | chr8.2:20704426-20704445 | None:intergenic | 30.0% | |
| CTGAGAAATGTTGTCAAATA+TGG | + | chr8.2:20704714-20704733 | MS.gene49263:intron | 30.0% | |
| CTTAAATGTGTGTGCATATA+TGG | + | chr8.2:20704377-20704396 | MS.gene49263:intron | 30.0% | |
| GAAAAAAGATATCAGCAATG+TGG | - | chr8.2:20704833-20704852 | None:intergenic | 30.0% | |
| GAAAATCACTTCAATAGAAC+AGG | - | chr8.2:20703653-20703672 | None:intergenic | 30.0% | |
| GTAATGAATTCACTTGACAT+TGG | - | chr8.2:20704985-20705004 | None:intergenic | 30.0% | |
| GTGAATTCATTACATGCAAA+AGG | + | chr8.2:20704992-20705011 | MS.gene49263:CDS | 30.0% | |
| TAAAGAGATGAGGAAAAAGA+GGG | + | chr8.2:20704522-20704541 | MS.gene49263:CDS | 30.0% | |
| TATATGTATGTATGTCTGTG+TGG | + | chr8.2:20702940-20702959 | MS.gene49263:intron | 30.0% | |
| TCATCTCTTTAAATGCTTGA+AGG | - | chr8.2:20704513-20704532 | None:intergenic | 30.0% | |
| TGAACTTTATAAGAACACCA+AGG | + | chr8.2:20703880-20703899 | MS.gene49263:CDS | 30.0% | |
| TGACAAAGAGCAAATTCATA+GGG | + | chr8.2:20705047-20705066 | MS.gene49263:CDS | 30.0% | |
| TTAAAGAGATGAGGAAAAAG+AGG | + | chr8.2:20704521-20704540 | MS.gene49263:CDS | 30.0% | |
| TTCAAGCATTTAAAGAGATG+AGG | + | chr8.2:20704512-20704531 | MS.gene49263:CDS | 30.0% | |
| TTGACAAAGAGCAAATTCAT+AGG | + | chr8.2:20705046-20705065 | MS.gene49263:CDS | 30.0% | |
| TTGCAAAATTTACATCATGG+TGG | + | chr8.2:20703070-20703089 | MS.gene49263:intron | 30.0% | |
| TTGCAAGTTTCAGATTCATA+TGG | - | chr8.2:20703478-20703497 | None:intergenic | 30.0% | |
| ! | ACATGCACATAATTTTCATC+TGG | - | chr8.2:20703004-20703023 | None:intergenic | 30.0% |
| ! | AGCTAATGTGATAATGTTGT+TGG | + | chr8.2:20703696-20703715 | MS.gene49263:intron | 30.0% |
| ! | ATCACAATTTAAAACCTCTG+TGG | - | chr8.2:20704665-20704684 | None:intergenic | 30.0% |
| ! | CATGCACATAATTTTCATCT+GGG | - | chr8.2:20703003-20703022 | None:intergenic | 30.0% |
| ! | CTAGACACAGTTCTAATAAA+AGG | - | chr8.2:20704809-20704828 | None:intergenic | 30.0% |
| !! | ATGTACTTTTTGTTGGTAGA+AGG | + | chr8.2:20703579-20703598 | MS.gene49263:intron | 30.0% |
| !!! | TCATTCTTTTCAGGTTTATG+AGG | + | chr8.2:20704477-20704496 | MS.gene49263:intron | 30.0% |
| AAACAGGTTCGAGATATTTC+AGG | + | chr8.2:20703995-20704014 | MS.gene49263:intron | 35.0% | |
| AACAGGTTCGAGATATTTCA+GGG | + | chr8.2:20703996-20704015 | MS.gene49263:intron | 35.0% | |
| AATTCATAGGGTCTATGTTG+TGG | + | chr8.2:20705059-20705078 | MS.gene49263:CDS | 35.0% | |
| ACACACATTTAAGAAACGCA+GGG | - | chr8.2:20704370-20704389 | None:intergenic | 35.0% | |
| ACTTTCAAACCATTGAAGTC+CGG | - | chr8.2:20704194-20704213 | None:intergenic | 35.0% | |
| CACTAAGAGATATCATCTCA+AGG | + | chr8.2:20705112-20705131 | MS.gene49263:CDS | 35.0% | |
| CTCAGTAAAATCAAGGATTG+TGG | - | chr8.2:20704699-20704718 | None:intergenic | 35.0% | |
| CTTCAATGGTTTGAAAGTTG+GGG | + | chr8.2:20704196-20704215 | MS.gene49263:CDS | 35.0% | |
| GACTTCAATGGTTTGAAAGT+TGG | + | chr8.2:20704194-20704213 | MS.gene49263:CDS | 35.0% | |
| GAGAAAAGAAGAGGGAATAA+TGG | + | chr8.2:20702736-20702755 | MS.gene49263:CDS | 35.0% | |
| GATCTTGATGAACTTGACAA+TGG | + | chr8.2:20704448-20704467 | MS.gene49263:intron | 35.0% | |
| GATGAGAGTTGAAGATCTAT+GGG | + | chr8.2:20702808-20702827 | MS.gene49263:CDS | 35.0% | |
| TAGACATTGCAAAACAACCT+TGG | - | chr8.2:20703900-20703919 | None:intergenic | 35.0% | |
| TCACAGAACAATTACAGTGA+AGG | + | chr8.2:20704909-20704928 | MS.gene49263:intron | 35.0% | |
| TCTTTAAATGCTTGAAGGAC+TGG | - | chr8.2:20704508-20704527 | None:intergenic | 35.0% | |
| TGCAGAATTCATACTTGACA+AGG | - | chr8.2:20704317-20704336 | None:intergenic | 35.0% | |
| TTCTGCCAACATATGAATCA+CGG | - | chr8.2:20704167-20704186 | None:intergenic | 35.0% | |
| ! | TGTTGTATGGATTTTGCATC+AGG | + | chr8.2:20703382-20703401 | MS.gene49263:CDS | 35.0% |
| ! | TTAGTGTGATTAGTCCTTCA+AGG | - | chr8.2:20705098-20705117 | None:intergenic | 35.0% |
| !! | AAAAGTATTTCCGTTTGCTG+CGG | - | chr8.2:20703783-20703802 | None:intergenic | 35.0% |
| !! | AGTTTGCTGGAATTGTTGTA+TGG | + | chr8.2:20703369-20703388 | MS.gene49263:CDS | 35.0% |
| !! | TGATTGGTTTGTCAGAATCA+TGG | - | chr8.2:20703100-20703119 | None:intergenic | 35.0% |
| !!! | AACTTCTGGAAACTTTTTCG+AGG | + | chr8.2:20703844-20703863 | MS.gene49263:CDS | 35.0% |
| !!! | TAGCTAACTTTTTCGCAAAC+AGG | + | chr8.2:20703979-20703998 | MS.gene49263:intron | 35.0% |
| AAATCACCAAAATAGCCGTG+GGG | - | chr8.2:20705150-20705169 | None:intergenic | 40.0% | |
| ACACAGAGAGAGAAAAGAAG+AGG | + | chr8.2:20702727-20702746 | MS.gene49263:CDS | 40.0% | |
| ACCAACATCAGATAGTTCCT+TGG | - | chr8.2:20704224-20704243 | None:intergenic | 40.0% | |
| ACCAAGGAACTATCTGATGT+TGG | + | chr8.2:20704220-20704239 | MS.gene49263:CDS | 40.0% | |
| AGAAATCACCAAAATAGCCG+TGG | - | chr8.2:20705152-20705171 | None:intergenic | 40.0% | |
| AGAAGAGGGAATAATGGCAA+TGG | + | chr8.2:20702742-20702761 | MS.gene49263:CDS | 40.0% | |
| AGATCTATGGGATGTTCAAG+AGG | + | chr8.2:20702820-20702839 | MS.gene49263:CDS | 40.0% | |
| ATATTTCAGGGACATTCCGA+TGG | + | chr8.2:20704008-20704027 | MS.gene49263:CDS | 40.0% | |
| ATCGGAATAGTTGAGTTTGC+TGG | + | chr8.2:20703356-20703375 | MS.gene49263:CDS | 40.0% | |
| CACACACATTTAAGAAACGC+AGG | - | chr8.2:20704371-20704390 | None:intergenic | 40.0% | |
| CACAGAGAGAGAAAAGAAGA+GGG | + | chr8.2:20702728-20702747 | MS.gene49263:CDS | 40.0% | |
| CTTCTCCAAGTAGCTTCTAA+CGG | - | chr8.2:20704947-20704966 | None:intergenic | 40.0% | |
| GAAATCACCAAAATAGCCGT+GGG | - | chr8.2:20705151-20705170 | None:intergenic | 40.0% | |
| GACAAGGTTCAATGCAATGA+GGG | - | chr8.2:20704301-20704320 | None:intergenic | 40.0% | |
| GATCTCTCCAAAGCAAGAAA+CGG | - | chr8.2:20704037-20704056 | None:intergenic | 40.0% | |
| GGATGAGAGTTGAAGATCTA+TGG | + | chr8.2:20702807-20702826 | MS.gene49263:CDS | 40.0% | |
| GGCTGAAGCTGTGAAAATAT+TGG | + | chr8.2:20703259-20703278 | MS.gene49263:CDS | 40.0% | |
| GTCACATACACATGCATGTT+TGG | - | chr8.2:20703132-20703151 | None:intergenic | 40.0% | |
| GTTGTCAAATATGGCTGATG+CGG | + | chr8.2:20704723-20704742 | MS.gene49263:intron | 40.0% | |
| TATTTCAGGGACATTCCGAT+GGG | + | chr8.2:20704009-20704028 | MS.gene49263:CDS | 40.0% | |
| TCAATCCAACTAGCATCTTC+AGG | - | chr8.2:20703329-20703348 | None:intergenic | 40.0% | |
| TCTATGTTGTGGACGATGAT+GGG | + | chr8.2:20705070-20705089 | MS.gene49263:CDS | 40.0% | |
| TCTGACAAACCAATCAACTG+TGG | + | chr8.2:20703104-20703123 | MS.gene49263:intron | 40.0% | |
| TGACAAGGTTCAATGCAATG+AGG | - | chr8.2:20704302-20704321 | None:intergenic | 40.0% | |
| TGTTTGGTACCACAGTTGAT+TGG | - | chr8.2:20703116-20703135 | None:intergenic | 40.0% | |
| TTATAGGTATGTCACCACAG+AGG | + | chr8.2:20704648-20704667 | MS.gene49263:intron | 40.0% | |
| TTCAACTCTCATCCCAAGTT+TGG | - | chr8.2:20702801-20702820 | None:intergenic | 40.0% | |
| ! | AAACTACCTTGGTTTGAAGC+AGG | - | chr8.2:20702914-20702933 | None:intergenic | 40.0% |
| ! | TATTTTCACAGCTTCAGCCA+AGG | - | chr8.2:20703258-20703277 | None:intergenic | 40.0% |
| !! | CAAAATGAAGAGTGTTCCTG+TGG | + | chr8.2:20704096-20704115 | MS.gene49263:CDS | 40.0% |
| !! | CACACCTTGATGATCTGTTT+TGG | - | chr8.2:20704262-20704281 | None:intergenic | 40.0% |
| AATCAAAAGAGGTGGCACCA+CGG | + | chr8.2:20704561-20704580 | MS.gene49263:CDS | 45.0% | |
| AGTGTTCCTGTGGTAGACTT+GGG | + | chr8.2:20704106-20704125 | MS.gene49263:CDS | 45.0% | |
| ATGAGGAAAAAGAGGGTTGG+AGG | + | chr8.2:20704529-20704548 | MS.gene49263:CDS | 45.0% | |
| ATGCACCTGAAGATGCTAGT+TGG | + | chr8.2:20703321-20703340 | MS.gene49263:CDS | 45.0% | |
| CATATGTTGGCAGAATGTGC+CGG | + | chr8.2:20704172-20704191 | MS.gene49263:CDS | 45.0% | |
| CTACAATGAGAGAGATGCCA+AGG | + | chr8.2:20702765-20702784 | MS.gene49263:CDS | 45.0% | |
| CTTAGAAAGCAGCAAGAGCA+TGG | - | chr8.2:20704074-20704093 | None:intergenic | 45.0% | |
| GACGCCAAAACAGATCATCA+AGG | + | chr8.2:20704255-20704274 | MS.gene49263:CDS | 45.0% | |
| GAGATGAGGAAAAAGAGGGT+TGG | + | chr8.2:20704526-20704545 | MS.gene49263:CDS | 45.0% | |
| GATGTCTTTGACCGTGATTG+AGG | - | chr8.2:20704749-20704768 | None:intergenic | 45.0% | |
| GCTTATATTACCAACTGCCG+TGG | - | chr8.2:20704581-20704600 | None:intergenic | 45.0% | |
| GGCAAAGGAAAAGCAGAAAC+AGG | - | chr8.2:20702893-20702912 | None:intergenic | 45.0% | |
| GTCTATGTTGTGGACGATGA+TGG | + | chr8.2:20705069-20705088 | MS.gene49263:CDS | 45.0% | |
| GTGCCTGTAATCAAAAGAGG+TGG | + | chr8.2:20704553-20704572 | MS.gene49263:CDS | 45.0% | |
| GTTTGAAAGTTGGGGAACCA+AGG | + | chr8.2:20704204-20704223 | MS.gene49263:CDS | 45.0% | |
| TATTCTGAGTGCACCTGTTG+TGG | + | chr8.2:20703292-20703311 | MS.gene49263:CDS | 45.0% | |
| TGAGGAAAAAGAGGGTTGGA+GGG | + | chr8.2:20704530-20704549 | MS.gene49263:CDS | 45.0% | |
| TGCCAACATATGAATCACGG+CGG | - | chr8.2:20704164-20704183 | None:intergenic | 45.0% | |
| !! | GTGCCACCTCTTTTGATTAC+AGG | - | chr8.2:20704559-20704578 | None:intergenic | 45.0% |
| !!! | ATCTGTTTTGGCGTCACAAG+GGG | - | chr8.2:20704250-20704269 | None:intergenic | 45.0% |
| !!! | GATCTGTTTTGGCGTCACAA+GGG | - | chr8.2:20704251-20704270 | None:intergenic | 45.0% |
| !!! | TGATCTGTTTTGGCGTCACA+AGG | - | chr8.2:20704252-20704271 | None:intergenic | 45.0% |
| AAGCAAGAAACGGAGCCCAT+CGG | - | chr8.2:20704027-20704046 | None:intergenic | 50.0% | |
| AAGGTCCGCATCCACAATTC+AGG | - | chr8.2:20704790-20704809 | None:intergenic | 50.0% | |
| ACAATTCAGGTCGTGACGCA+AGG | - | chr8.2:20704777-20704796 | None:intergenic | 50.0% | |
| ACCCGCCGTGATTCATATGT+TGG | + | chr8.2:20704159-20704178 | MS.gene49263:CDS | 50.0% | |
| ACCCTGCTATTAGCAGGTAG+AGG | - | chr8.2:20705189-20705208 | None:intergenic | 50.0% | |
| AGGAGTCCAGAAGCCAAACT+TGG | + | chr8.2:20702785-20702804 | MS.gene49263:CDS | 50.0% | |
| AGGCTAGTACATGAACCCCA+CGG | + | chr8.2:20705132-20705151 | MS.gene49263:CDS | 50.0% | |
| AGTAGCTTCTAACGGAGGTC+AGG | - | chr8.2:20704939-20704958 | None:intergenic | 50.0% | |
| ATGGGCTCCGTTTCTTGCTT+TGG | + | chr8.2:20704027-20704046 | MS.gene49263:CDS | 50.0% | |
| CACGACCTGAATTGTGGATG+CGG | + | chr8.2:20704782-20704801 | MS.gene49263:intron | 50.0% | |
| CAGAATGTGCCGGACTTCAA+TGG | + | chr8.2:20704182-20704201 | MS.gene49263:CDS | 50.0% | |
| CCCTCTACCTGCTAATAGCA+GGG | + | chr8.2:20705185-20705204 | MS.gene49263:CDS | 50.0% | |
| CCCTGCTATTAGCAGGTAGA+GGG | - | chr8.2:20705188-20705207 | None:intergenic | 50.0% | |
| CCTTTGCCTGCTTCAAACCA+AGG | + | chr8.2:20702905-20702924 | MS.gene49263:CDS | 50.0% | |
| CTCCAAGTAGCTTCTAACGG+AGG | - | chr8.2:20704944-20704963 | None:intergenic | 50.0% | |
| GACCTCCGTTAGAAGCTACT+TGG | + | chr8.2:20704939-20704958 | MS.gene49263:CDS | 50.0% | |
| GAGGAAAAAGAGGGTTGGAG+GGG | + | chr8.2:20704531-20704550 | MS.gene49263:CDS | 50.0% | |
| GAGTGTTCCTGTGGTAGACT+TGG | + | chr8.2:20704105-20704124 | MS.gene49263:CDS | 50.0% | |
| GCCAACATATGAATCACGGC+GGG | - | chr8.2:20704163-20704182 | None:intergenic | 50.0% | |
| GGAGTCCAGAAGCCAAACTT+GGG | + | chr8.2:20702786-20702805 | MS.gene49263:CDS | 50.0% | |
| GGTGCATCAACATCCACAAC+AGG | - | chr8.2:20703308-20703327 | None:intergenic | 50.0% | |
| TCCCTCTACCTGCTAATAGC+AGG | + | chr8.2:20705184-20705203 | MS.gene49263:CDS | 50.0% | |
| TTGCGTCACGACCTGAATTG+TGG | + | chr8.2:20704776-20704795 | MS.gene49263:intron | 50.0% | |
| ! | AGTTTGGCTTCTGGACTCCT+TGG | - | chr8.2:20702785-20702804 | None:intergenic | 50.0% |
| ! | CATGAACCCCACGGCTATTT+TGG | + | chr8.2:20705141-20705160 | MS.gene49263:CDS | 50.0% |
| ! | CCTTGGTTTGAAGCAGGCAA+AGG | - | chr8.2:20702908-20702927 | None:intergenic | 50.0% |
| ! | CTCATCCCAAGTTTGGCTTC+TGG | - | chr8.2:20702794-20702813 | None:intergenic | 50.0% |
| ! | GCAATAGCACTTGCACTGGT+TGG | - | chr8.2:20703758-20703777 | None:intergenic | 50.0% |
| ! | GGGGTGCCTGTAATCAAAAG+AGG | + | chr8.2:20704550-20704569 | MS.gene49263:CDS | 50.0% |
| ! | TTGGAGTGGATGGACTCCTA+GGG | - | chr8.2:20703739-20703758 | None:intergenic | 50.0% |
| !! | GACGATGATGGGAACCTTGA+AGG | + | chr8.2:20705081-20705100 | MS.gene49263:CDS | 50.0% |
| AAGTTGTCGCTGCAGATCCG+AGG | - | chr8.2:20703829-20703848 | None:intergenic | 55.0% | |
| AGTCTGAACCTCCATCCCCT+AGG | + | chr8.2:20703720-20703739 | MS.gene49263:intron | 55.0% | |
| GAACTCGAAGCCTTAGGCCT+CGG | + | chr8.2:20703809-20703828 | MS.gene49263:CDS | 55.0% | |
| GCTATTGCAGCCGCAGCAAA+CGG | + | chr8.2:20703770-20703789 | MS.gene49263:CDS | 55.0% | |
| GCTCGAGAACTCGAAGCCTT+AGG | + | chr8.2:20703803-20703822 | MS.gene49263:CDS | 55.0% | |
| GGATCTGCAGCGACAACTTC+TGG | + | chr8.2:20703830-20703849 | MS.gene49263:CDS | 55.0% | |
| GGCTGCAATAGCACTTGCAC+TGG | - | chr8.2:20703762-20703781 | None:intergenic | 55.0% | |
| ! | GTTGGAGTGGATGGACTCCT+AGG | - | chr8.2:20703740-20703759 | None:intergenic | 55.0% |
| ! | TGGAGTGGATGGACTCCTAG+GGG | - | chr8.2:20703738-20703757 | None:intergenic | 55.0% |
| !! | AGCACTTGCACTGGTTGGAG+TGG | - | chr8.2:20703753-20703772 | None:intergenic | 55.0% |
| !! | CTTGCACTGGTTGGAGTGGA+TGG | - | chr8.2:20703749-20703768 | None:intergenic | 55.0% |
| CCAGCACCCAAGTCTACCAC+AGG | - | chr8.2:20704115-20704134 | None:intergenic | 60.0% | |
| CCTGTGGTAGACTTGGGTGC+TGG | + | chr8.2:20704112-20704131 | MS.gene49263:CDS | 60.0% | |
| GGCTGATGCGGCCTCAATCA+CGG | + | chr8.2:20704735-20704754 | MS.gene49263:intron | 60.0% | |
| ! | GATGGACTCCTAGGGGATGG+AGG | - | chr8.2:20703731-20703750 | None:intergenic | 60.0% |
| ! | GTGGATGGACTCCTAGGGGA+TGG | - | chr8.2:20703734-20703753 | None:intergenic | 60.0% |
| AGAGGTGGCACCACGGCAGT+TGG | + | chr8.2:20704568-20704587 | MS.gene49263:CDS | 65.0% | |
| CGCTGCAGATCCGAGGCCTA+AGG | - | chr8.2:20703822-20703841 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 20702719 | 20705212 | 20702719 | ID=MS.gene49263 |
| chr8.2 | mRNA | 20702719 | 20705212 | 20702719 | ID=MS.gene49263.t1;Parent=MS.gene49263 |
| chr8.2 | exon | 20702719 | 20702926 | 20702719 | ID=MS.gene49263.t1.exon1;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20702719 | 20702926 | 20702719 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| chr8.2 | exon | 20703231 | 20703403 | 20703231 | ID=MS.gene49263.t1.exon2;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20703231 | 20703403 | 20703231 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| chr8.2 | exon | 20703722 | 20703901 | 20703722 | ID=MS.gene49263.t1.exon3;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20703722 | 20703901 | 20703722 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| chr8.2 | exon | 20704001 | 20704276 | 20704001 | ID=MS.gene49263.t1.exon4;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20704001 | 20704276 | 20704001 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| chr8.2 | exon | 20704490 | 20704653 | 20704490 | ID=MS.gene49263.t1.exon5;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20704490 | 20704653 | 20704490 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| chr8.2 | exon | 20704915 | 20705212 | 20704915 | ID=MS.gene49263.t1.exon6;Parent=MS.gene49263.t1 |
| chr8.2 | CDS | 20704915 | 20705212 | 20704915 | ID=cds.MS.gene49263.t1;Parent=MS.gene49263.t1 |
| Gene Sequence |
| Protein sequence |
