AlfalfaGEDB | MS.gene067332

M. sativa cultivar XinJiangDaYe / MS.gene067332

KEGG: K13679
GO: GO:0003674 GO:0003824 GO:0004373 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0046527
PFAM: PF00534.23 PF08323.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067332.t1	XP_013444547.1	98.1	616	12	0	1	616	1	616	0.00E+00	1230.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067332.t1	Q00775	72.8	618	155	3	1	616	1	607	2.9e-265	915.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067332.t1	A0A072TMC9	98.1	616	12	0	1	616	1	616	0.0e+00	1230.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene067332	0.804408	2.19E-49	-1.69E-46
MS.gene049171	MS.gene067332	0.840187	1.01E-57	-1.69E-46
MS.gene049173	MS.gene067332	0.804893	1.74E-49	-1.69E-46
MS.gene049217	MS.gene067332	0.871594	6.07E-67	-1.69E-46
MS.gene049222	MS.gene067332	0.878606	2.45E-69	-1.69E-46
MS.gene049232	MS.gene067332	0.899971	1.17E-77	-1.69E-46
MS.gene049285	MS.gene067332	0.875891	2.15E-68	-1.69E-46
MS.gene049320	MS.gene067332	0.879603	1.09E-69	-1.69E-46
MS.gene049356	MS.gene067332	0.800823	1.20E-48	-1.69E-46
MS.gene049369	MS.gene067332	0.834485	2.92E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067332.t1	MTR_8g024340	98.052	616	12	0	1	616	1	616	0.0	1259
MS.gene067332.t1	MTR_1g078000	73.310	577	150	2	41	616	35	608	0.0	865
MS.gene067332.t1	MTR_6g012380	40.864	509	271	10	90	590	267	753	3.70e-117	366
MS.gene067332.t1	MTR_3g091570	40.338	533	270	15	83	588	134	645	9.74e-117	362
MS.gene067332.t1	MTR_3g091570	38.855	489	251	14	127	588	1	468	1.53e-100	314
MS.gene067332.t1	MTR_4g094595	29.834	543	283	20	89	589	490	976	1.55e-55	203
MS.gene067332.t1	MTR_2g023320	29.868	529	255	17	90	587	474	917	1.96e-52	194
MS.gene067332.t1	MTR_2g023320	30.057	529	254	18	90	587	658	1101	2.83e-52	194
MS.gene067332.t1	MTR_5g030600	23.197	513	328	19	89	579	190	658	1.27e-21	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067332.t1	AT1G32900	70.874	618	170	5	1	616	1	610	0.0	858
MS.gene067332.t1	AT3G01180	42.633	509	262	10	90	590	301	787	1.92e-119	373
MS.gene067332.t1	AT5G24300	40.152	528	277	14	81	588	133	641	1.95e-115	358
MS.gene067332.t1	AT5G24300	40.152	528	277	14	81	588	133	641	1.95e-115	358
MS.gene067332.t1	AT4G18240	29.779	544	280	18	88	587	540	1025	2.61e-55	203
MS.gene067332.t1	AT1G11720	28.817	524	272	14	90	590	594	1039	9.21e-55	201
MS.gene067332.t1	AT1G11720	28.817	524	272	14	90	590	646	1091	9.62e-55	201

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Find 136 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCACCGATGAGACT+TGG	0.575958	8.4:-70697270	MS.gene067332:CDS
AAAATCAACTGGATGAAAGC+TGG	0.487870	8.4:-70695175	MS.gene067332:CDS
AAAATTTATGGACCTGCCAC+GGG	0.558373	8.4:-70696175	MS.gene067332:CDS
AAATATTTCTCAGGACCATA+TGG	0.444026	8.4:-70695733	MS.gene067332:intron
AAATCTATGTACCAGCCAAA+TGG	0.518875	8.4:-70695568	MS.gene067332:CDS
AAATGAAGGCAGTGAAATCA+AGG	0.495094	8.4:-70697167	MS.gene067332:CDS
AACATCCTCCTTAATAAATT+GGG	0.300262	8.4:+70694664	None:intergenic
AAGCTTACTGCTAATACTGG+TGG	0.598496	8.4:+70697012	None:intergenic
AATAGCAAAGACTGTCACAA+AGG	0.677740	8.4:-70693856	MS.gene067332:CDS
ACAAAGGCCCTTGCAGTCTA+TGG	0.324992	8.4:-70693840	MS.gene067332:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTACTAAGTGCATGTT+TGG	+	chr8.4:70696992-70697011	None:intergenic	30.0%
AAATATTTCTCAGGACCATA+TGG	-	chr8.4:70694889-70694908	MS.gene067332:intron	30.0%
AAATTCAGTTACTCAGTTGA+TGG	+	chr8.4:70697229-70697248	None:intergenic	30.0%
AATTCAGTTACTCAGTTGAT+GGG	+	chr8.4:70697228-70697247	None:intergenic	30.0%
ACATCCTCCTTAATAAATTG+GGG	+	chr8.4:70695960-70695979	None:intergenic	30.0%
ACGAGCAATAAATATTTCTC+AGG	-	chr8.4:70694880-70694899	MS.gene067332:intron	30.0%
AGAAAAGCCAATACACATAA+TGG	-	chr8.4:70693382-70693401	MS.gene067332:intron	30.0%
AGAAATGATCAAGAATTGCA+TGG	-	chr8.4:70696820-70696839	MS.gene067332:intron	30.0%
AGACTGTGATTTACTGTTAA+AGG	+	chr8.4:70694682-70694701	None:intergenic	30.0%
AGTTCTTCAAACTTTCTTTC+TGG	-	chr8.4:70695185-70695204	MS.gene067332:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	70693265	70697379	70693265	ID=MS.gene067332
chr8.4	mRNA	70693265	70697379	70693265	ID=MS.gene067332.t1;Parent=MS.gene067332
chr8.4	exon	70697020	70697379	70697020	ID=MS.gene067332.t1.exon1;Parent=MS.gene067332.t1
chr8.4	CDS	70697020	70697379	70697020	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70696515	70696595	70696515	ID=MS.gene067332.t1.exon2;Parent=MS.gene067332.t1
chr8.4	CDS	70696515	70696595	70696515	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70696299	70696397	70696299	ID=MS.gene067332.t1.exon3;Parent=MS.gene067332.t1
chr8.4	CDS	70696299	70696397	70696299	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70696129	70696218	70696129	ID=MS.gene067332.t1.exon4;Parent=MS.gene067332.t1
chr8.4	CDS	70696129	70696218	70696129	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70695734	70695797	70695734	ID=MS.gene067332.t1.exon5;Parent=MS.gene067332.t1
chr8.4	CDS	70695734	70695797	70695734	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70695549	70695649	70695549	ID=MS.gene067332.t1.exon6;Parent=MS.gene067332.t1
chr8.4	CDS	70695549	70695649	70695549	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70695311	70695420	70695311	ID=MS.gene067332.t1.exon7;Parent=MS.gene067332.t1
chr8.4	CDS	70695311	70695420	70695311	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70694979	70695222	70694979	ID=MS.gene067332.t1.exon8;Parent=MS.gene067332.t1
chr8.4	CDS	70694979	70695222	70694979	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70694649	70694825	70694649	ID=MS.gene067332.t1.exon9;Parent=MS.gene067332.t1
chr8.4	CDS	70694649	70694825	70694649	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70694350	70694541	70694350	ID=MS.gene067332.t1.exon10;Parent=MS.gene067332.t1
chr8.4	CDS	70694350	70694541	70694350	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70694018	70694104	70694018	ID=MS.gene067332.t1.exon11;Parent=MS.gene067332.t1
chr8.4	CDS	70694018	70694104	70694018	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70693782	70693910	70693782	ID=MS.gene067332.t1.exon12;Parent=MS.gene067332.t1
chr8.4	CDS	70693782	70693910	70693782	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1
chr8.4	exon	70693265	70693381	70693265	ID=MS.gene067332.t1.exon13;Parent=MS.gene067332.t1
chr8.4	CDS	70693265	70693381	70693265	ID=cds.MS.gene067332.t1;Parent=MS.gene067332.t1

Gene Sequence

>MS.gene067332

ATGGCAACAGTGACTGCTTCAAGCAACATAGCATCAAGAAATTCTCATATCTACCATGTCAATGTACCAACTATCTCATGTGAGTCTAAAACAGCACCGATGAGACTTGGTTCTATGAGAAAAGCCAATACACATAATGGACTCAGAATTTTGAACTCATTGGATGAGCTACTAAATAGAACTCCAATTAAAATGAAGGCAGTGAAATCAAGGAGAAAAGGTCTTCAGAGAAAGAATGTTATGCCGAAAGGTATTATAATTTGTGGCATGAATTTGATCTTTGTTGGAACTGAGGTTGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTAGGAGGTCTTCCACCAGTATTAGCAGTAAGCTTACTGTTATGGTTTGCTTTATATTTATTTATTTATTTAGCTATATACTTCGTAGAAATGCTAACATGACACTCTTTTTGAAGTTCAGTTATTATGTATTGACAATATAAAACATCTGCAAGATTTCTACGTTGTAAATTATGATTGGCTGTGTTTTTGTAGAACTTTTTTTACATTGTCAGTGCGTAGCTATTAAATTTCTCTTTTTGAAATACTCACAACAACTGAAATTTATACGAATCCCGCCGCTGAGACTCACATTATTCAGCAGGAATCTTGTGATTTTCACCCGATTGTAACTAATGTGTTGGAAAATGTACGTTTAAAGAGTGCGCTGATAGCATTTCTCTGTAGTGGTTGACATATTTGGTGTTCAGTTAAGTCATAACAAGACTTTCTCTAATTTATCACTCTCTAGGCTAATGGACACAGAGTTATGACCATCGCTCCACGTTATGACCAATACAAAGATGCGTGGGATACAAGTGTAACAATTGAGGTATATATTATCCTTGACAAAATGTTTTCATTGTAATCTTCATTGCACAGGTTTTCTTTTTATCCAATTGTGCTATGCTATAGTTAAATGCATTGTATTGCAATCTGTTTATTACAGGTAAAAGTAGGAGATAGAAAAGAAAAAGTTTGCTTCTTTCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTGAGAGTATTTCTCTTTTTCTTTTGAGCTATATACTCACTGTTTTGCTTTCAGATACTTAATGATGATTGAATTTGAAGGTTTGGGGAAAAACTGGAACAAAAATTTATGGACCTGCCACGGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTCTTCTGTCAGGTTTTATAACCATATCCCTTTGGTTACAATGTTGTTTGCACAAATATTGTATCTGTAGCTTTTTATATTGTCTAAGGTGCAGCTCACAGAGAGAAATTTGTGGAAAGAATCTATATTAGTTACGATTTATAATGTGTTGTGTTCACTTATTGAGCAGCAACGACCTTTAACAGTAAATCACAGTCTCACATTATGCATATATCAATGTTCTGTATCAACTGTTAATCACATCTCTTTATAAATAAAGCTATACATTGTAAAAGTAGCATGTTCTGCTTTAGTCCTAATTTTTCCTTTGTCATTTTTTTTCCCTTGGAAATAATCTTAACAGGCAGCTCTGGAAGCAGCAAGGGTTCTGAATCTCACGAGCAATAAATATTTCTCAGGACCATATGGTATGAACTATAGTCATAAATGAAATTCTTGGAAACAAATGGTTAAAGATCATTTAAGCACGATGTTTTGATTTTCGTATGCAGGTGAAGATGTCATTTTCGTCGCTAATGATTGGCACACGGCCCTTATCTCATGCTACTTGAAATCTATGTACCAGCCAAATGGCATATTTAGGAATGCCAAAGTAGGTCTAAATGGCAACTTCATTATTATGATGCAACACTGATAGATATTATTAGTTATTTAACGATTTAATCATTTGAAAAACTAACAAGTTCTTCAAACTTTCTTTCTGGTTGCTACCATTATTAGGTTGTTTTTTGTATCCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTATTCACTTCTCAATCTTCCCGACCAATTTAAAAGCTCATTCGACTTCATAGATGGGTATGCTTTTCATAATTTGTGAACTAACTGACGAATTTAGCATTAACGAACAATAAAAAGTTTATTTTATGTTGTTCTAATCTTGTAGGTATGTTAAACCAGTTGTTGGAAGAAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCTCACCGGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTGGAATTGGACAACATTCTTCGCCGAACTGGTGTTACTGGTATTGTAAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAACTGTCAAATACGACGATTCGACAGTAAGAATGGTTTTCTTGAGATGTAAAGTTTCTCTAAAATGTGTCGTGGCTTATAAGAAAAAGAATTTAATCTATACACACTGAATGACACTGCATGAAACTTGAACTCTAAGACAATTACATAACAAATTTTTAACTAGCTCGTCTACTCAGGTATTGGAAGGAAAAGCCCTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGATTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGTAGACTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTATTAAGGAGGATGTTCAGATAGTAGCCCTAGTAAGTATAATAATGATGGAAAAAAAAAAGTAATTTTCTTTCTGATCCTTTCTTACTTCATTAAAGGAATAAGATATCTCATTTAAATATGTTATGCCATTTCTTAGGGAACAGGAAAAAAGGAAATGGAAAAGCAACTTCAACAACTTGAAATATCATATCCTGACAAGGCTAGAGGAGTTGCAAAATTCAATGTTCCCTTAGCACACATGATAATTGCAGGAGCTGATTATATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGCTACAAGCTATGCGCTACGGAACTGTATGATTCCTACTTCACACAATCCTTTCCTAGTGGTTTTTCCAGATTTGGATTGTATGTAGTGTGACTGCATGCAGTCAGTCCAATCTGGATCGTCTGAAATTGAAAACTGGACTGTCAATTTTGATGGTTCAGATGTAGCTGACTGCGCGCACTCACGAGGTTGTGAATGCACACAACGCAGATCCGATTTTCCGCCATAAGACTTCCTCAATAATTTGTCTCACATTTTTTACTTCAACTAGGTACCAATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAAGTAATAATACCTAACAGCAGCCTTCATTTAATGCAAATGTGTCCATACGGTAGATTAAGTAGTAATCACTACCATTATCTTATTGTTTCTTAAATATTTTACTTTAGTGTGACGCTGTGGATCCGGCTGATGTGGATGCAATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCCAACTTTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGTGAGTTAGAGCAGAATTTTAGTGCATTTTAGATTGACGGTGAGTTTGGCAAAATCAAGGTGGCACCGTGATTTTGTTGAAGCTCCAGACTGTAACTTTTGCTAAAATCACAGTGACATGATTCTGCCAAACATGCACTTAGTAGTTTTTGTTTTCTCCTACTAGTCGTGTAAAGCTACCTACCTATGCTAATGTTCATGAAGAAGCTATGTGATAGCCTACGAAAAAAATTAGGATACAGAAGCTAGTTTAAACTTACAAAATTTTTATTTTAAAAACTTATAGTTATTGCAAAGACTTAATATCTCTTTATTTCTATAAGAGCTCCATGACAAGTTTATCCAAATAGGCTCTAAATTTATCCCATCAACTGAGTAACTGAATTTTGTTTTGGAATTAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTAGCTACTCCATGA

Protein sequence

>MS.gene067332.t1

MATVTASSNIASRNSHIYHVNVPTISCESKTAPMRLGSMRKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQRKNVMPKGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDRKEKVCFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQPNGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDAIAKTVTKALAVYGTPTFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP