Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58440.t1 | NP_001280900.1 | 100 | 59 | 0 | 0 | 1 | 59 | 119 | 177 | 7.40E-24 | 119 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58440.t1 | Q9C9L2 | 98.3 | 59 | 1 | 0 | 1 | 59 | 68 | 126 | 3.0e-26 | 118.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58440.t1 | M5WM86 | 100.0 | 59 | 0 | 0 | 1 | 59 | 109 | 167 | 5.3e-24 | 119.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58440.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051452 | MS.gene58440 | -0.858661 | 7.07E-63 | -1.69E-46 |
| MS.gene051975 | MS.gene58440 | -0.854739 | 1.01E-61 | -1.69E-46 |
| MS.gene052434 | MS.gene58440 | -0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene58440 | -0.812633 | 3.84E-51 | -1.69E-46 |
| MS.gene053094 | MS.gene58440 | -0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene053963 | MS.gene58440 | -0.814831 | 1.26E-51 | -1.69E-46 |
| MS.gene05469 | MS.gene58440 | -0.832298 | 1.02E-55 | -1.69E-46 |
| MS.gene055147 | MS.gene58440 | -0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene055155 | MS.gene58440 | -0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene58440 | -0.816252 | 6.09E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene58440 | -0.80369 | 3.09E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene58440 | -0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene58440 | -0.859131 | 5.11E-63 | -1.69E-46 |
| MS.gene057392 | MS.gene58440 | -0.81103 | 8.58E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene58440 | -0.824776 | 6.72E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene58440 | -0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene58440 | -0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene58440 | -0.820403 | 6.99E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene58440 | -0.822228 | 2.65E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58440.t1 | MTR_4g108370 | 100.000 | 59 | 0 | 0 | 1 | 59 | 113 | 171 | 4.23e-36 | 125 |
| MS.gene58440.t1 | MTR_5g039600 | 98.305 | 59 | 1 | 0 | 1 | 59 | 83 | 141 | 3.53e-35 | 122 |
| MS.gene58440.t1 | MTR_2g006150 | 91.525 | 59 | 5 | 0 | 1 | 59 | 146 | 204 | 1.43e-33 | 118 |
| MS.gene58440.t1 | MTR_2g006150 | 91.525 | 59 | 5 | 0 | 1 | 59 | 146 | 204 | 1.52e-33 | 119 |
| MS.gene58440.t1 | MTR_1g114380 | 80.702 | 57 | 11 | 0 | 1 | 57 | 49 | 105 | 4.13e-29 | 103 |
| MS.gene58440.t1 | MTR_1g038650 | 81.132 | 53 | 10 | 0 | 1 | 53 | 48 | 100 | 8.58e-27 | 97.1 |
| MS.gene58440.t1 | MTR_7g028160 | 89.362 | 47 | 5 | 0 | 1 | 47 | 66 | 112 | 9.42e-27 | 97.8 |
| MS.gene58440.t1 | MTR_8g033070 | 75.439 | 57 | 14 | 0 | 1 | 57 | 96 | 152 | 1.20e-25 | 95.9 |
| MS.gene58440.t1 | MTR_1g063870 | 82.979 | 47 | 8 | 0 | 1 | 47 | 65 | 111 | 5.43e-25 | 91.7 |
| MS.gene58440.t1 | MTR_1g101810 | 70.175 | 57 | 17 | 0 | 1 | 57 | 80 | 136 | 2.82e-23 | 89.4 |
| MS.gene58440.t1 | MTR_1g101810 | 70.175 | 57 | 17 | 0 | 1 | 57 | 110 | 166 | 4.44e-23 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58440.t1 | AT1G69690 | 98.305 | 59 | 1 | 0 | 1 | 59 | 68 | 126 | 1.65e-36 | 124 |
| MS.gene58440.t1 | AT3G47620 | 98.305 | 59 | 1 | 0 | 1 | 59 | 133 | 191 | 1.94e-35 | 124 |
| MS.gene58440.t1 | AT1G58100 | 89.831 | 59 | 6 | 0 | 1 | 59 | 76 | 134 | 2.74e-33 | 117 |
| MS.gene58440.t1 | AT1G72010 | 89.655 | 58 | 6 | 0 | 1 | 58 | 79 | 136 | 9.74e-33 | 115 |
| MS.gene58440.t1 | AT1G35560 | 89.831 | 59 | 6 | 0 | 1 | 59 | 71 | 129 | 4.11e-32 | 112 |
| MS.gene58440.t1 | AT5G23280 | 75.439 | 57 | 14 | 0 | 1 | 57 | 55 | 111 | 1.15e-27 | 99.4 |
| MS.gene58440.t1 | AT5G08330 | 74.138 | 58 | 15 | 0 | 1 | 58 | 47 | 104 | 2.53e-26 | 95.9 |
| MS.gene58440.t1 | AT2G45680 | 75.439 | 57 | 14 | 0 | 1 | 57 | 91 | 147 | 1.84e-25 | 95.5 |
| MS.gene58440.t1 | AT3G27010 | 89.130 | 46 | 5 | 0 | 1 | 46 | 94 | 139 | 2.13e-25 | 94.7 |
| MS.gene58440.t1 | AT3G27010 | 89.130 | 46 | 5 | 0 | 1 | 46 | 94 | 139 | 2.13e-25 | 94.7 |
| MS.gene58440.t1 | AT5G51910 | 75.439 | 57 | 14 | 0 | 1 | 57 | 73 | 129 | 8.89e-25 | 92.8 |
| MS.gene58440.t1 | AT5G51910 | 75.439 | 57 | 14 | 0 | 1 | 57 | 73 | 129 | 8.89e-25 | 92.8 |
| MS.gene58440.t1 | AT2G37000 | 81.818 | 44 | 8 | 0 | 1 | 44 | 59 | 102 | 5.98e-21 | 80.9 |
| MS.gene58440.t1 | AT5G41030 | 67.391 | 46 | 15 | 0 | 1 | 46 | 84 | 129 | 6.46e-19 | 76.6 |
| MS.gene58440.t1 | AT3G45150 | 60.465 | 43 | 17 | 0 | 1 | 43 | 33 | 75 | 5.74e-14 | 62.4 |
Find 13 sgRNAs with CRISPR-Local
Find 12 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTCACCATCAGATTTA+TGG | 0.154484 | 8.3:+15913302 | None:intergenic |
| GTTATAGCTGCCACCGGAAC+TGG | 0.348983 | 8.3:-15913247 | MS.gene58440:CDS |
| AGCAGGTATAGTTCCAGTTC+CGG | 0.418557 | 8.3:+15913234 | None:intergenic |
| TTGAGAGATGTGAAGTTAGC+AGG | 0.457458 | 8.3:+15913217 | None:intergenic |
| TTTCAGCTTACACGCGAACT+TGG | 0.460579 | 8.3:-15913325 | MS.gene58440:CDS |
| AATATCTCACTTCGTAGCTC+AGG | 0.489424 | 8.3:-15913196 | None:intergenic |
| TTGTTGAAGAAGCCATTCAA+TGG | 0.490318 | 8.3:+15913282 | None:intergenic |
| CCGGTGGCAGCTATAACAGC+TGG | 0.556756 | 8.3:+15913253 | None:intergenic |
| ACTCTAGCAGCACAAAGTGC+CGG | 0.564904 | 8.3:+15913349 | None:intergenic |
| CTGATGGTGAAACCATTGAA+TGG | 0.573344 | 8.3:-15913294 | MS.gene58440:CDS |
| GAACTTGGCCATAAATCTGA+TGG | 0.613525 | 8.3:-15913310 | MS.gene58440:CDS |
| CCAGCTGTTATAGCTGCCAC+CGG | 0.623678 | 8.3:-15913253 | MS.gene58440:CDS |
| AGGTATAGTTCCAGTTCCGG+TGG | 0.651482 | 8.3:+15913237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TGGTTTCACCATCAGATTTA+TGG | + | chr8.3:15913250-15913269 | None:intergenic | 35.0% | |
| TTGTTGAAGAAGCCATTCAA+TGG | + | chr8.3:15913270-15913289 | None:intergenic | 35.0% | |
| GAACTTGGCCATAAATCTGA+TGG | - | chr8.3:15913239-15913258 | MS.gene58440:CDS | 40.0% | |
| TTGAGAGATGTGAAGTTAGC+AGG | + | chr8.3:15913335-15913354 | None:intergenic | 40.0% | |
| ! | CTGATGGTGAAACCATTGAA+TGG | - | chr8.3:15913255-15913274 | MS.gene58440:CDS | 40.0% |
| AGCAGGTATAGTTCCAGTTC+CGG | + | chr8.3:15913318-15913337 | None:intergenic | 45.0% | |
| TTTCAGCTTACACGCGAACT+TGG | - | chr8.3:15913224-15913243 | MS.gene58440:CDS | 45.0% | |
| ACTCTAGCAGCACAAAGTGC+CGG | + | chr8.3:15913203-15913222 | None:intergenic | 50.0% | |
| AGGTATAGTTCCAGTTCCGG+TGG | + | chr8.3:15913315-15913334 | None:intergenic | 50.0% | |
| CCAGCTGTTATAGCTGCCAC+CGG | - | chr8.3:15913296-15913315 | MS.gene58440:CDS | 55.0% | |
| GTTATAGCTGCCACCGGAAC+TGG | - | chr8.3:15913302-15913321 | MS.gene58440:CDS | 55.0% | |
| CCGGTGGCAGCTATAACAGC+TGG | + | chr8.3:15913299-15913318 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 15913197 | 15913374 | 15913197 | ID=MS.gene58440 |
| chr8.3 | mRNA | 15913197 | 15913374 | 15913197 | ID=MS.gene58440.t1;Parent=MS.gene58440 |
| chr8.3 | exon | 15913197 | 15913374 | 15913197 | ID=MS.gene58440.t1.exon1;Parent=MS.gene58440.t1 |
| chr8.3 | CDS | 15913197 | 15913374 | 15913197 | ID=cds.MS.gene58440.t1;Parent=MS.gene58440.t1 |
| Gene Sequence |
| Protein sequence |
