Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056953.t1 | KEH32099.1 | 66.7 | 474 | 59 | 4 | 1 | 448 | 1 | 401 | 7.20E-71 | 278.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056953.t1 | Q9DED4 | 38.4 | 73 | 44 | 1 | 3 | 74 | 1 | 73 | 2.6e-08 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056953.t1 | A0A072UQJ0 | 66.7 | 474 | 59 | 4 | 1 | 448 | 1 | 401 | 5.2e-71 | 278.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056953 | MS.gene068333 | 0.810602 | 1.06E-50 | -1.69E-46 |
| MS.gene056953 | MS.gene070704 | 0.822871 | 1.88E-53 | -1.69E-46 |
| MS.gene056953 | MS.gene43452 | 0.803319 | 3.69E-49 | -1.69E-46 |
| MS.gene056953 | MS.gene59557 | 0.810601 | 1.06E-50 | -1.69E-46 |
| MS.gene056953 | MS.gene82044 | 0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene056953 | MS.gene82552 | 0.820815 | 5.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034468 | MS.gene056953 | PPI |
| MS.gene66767 | MS.gene056953 | PPI |
| MS.gene43051 | MS.gene056953 | PPI |
| MS.gene35396 | MS.gene056953 | PPI |
| MS.gene050322 | MS.gene056953 | PPI |
| MS.gene007227 | MS.gene056953 | PPI |
| MS.gene056953 | MS.gene84339 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056953.t1 | MTR_4g113150 | 74.187 | 461 | 46 | 9 | 1 | 448 | 1 | 401 | 0.0 | 550 |
| MS.gene056953.t1 | MTR_4g113150 | 88.028 | 284 | 26 | 3 | 165 | 448 | 259 | 534 | 2.47e-141 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056953.t1 | AT5G19960 | 41.398 | 186 | 61 | 6 | 1 | 167 | 1 | 157 | 1.23e-27 | 112 |
| MS.gene056953.t1 | AT3G47120 | 38.028 | 71 | 43 | 1 | 5 | 74 | 34 | 104 | 7.12e-11 | 63.5 |
Find 109 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGGCAGATCAAATTT+TGG | 0.252328 | 8.4:+15354925 | MS.gene056953:CDS |
| CGCACTGTCTTCAATTTGTA+TGG | 0.310277 | 8.4:+15354459 | MS.gene056953:CDS |
| GGGAAGACCACCAACGTAAA+TGG | 0.322442 | 8.4:-15354412 | None:intergenic |
| CCCTATCCCTGTCACGGTCT+CGG | 0.354327 | 8.4:-15355257 | None:intergenic |
| CATTACCATGATCATAATCT+TGG | 0.358631 | 8.4:-15355032 | None:intergenic |
| CCCTATCCCTATCATGGTCT+CGG | 0.372822 | 8.4:-15355350 | None:intergenic |
| ATTGGAATCATGACGGTGAT+AGG | 0.374936 | 8.4:+15355720 | MS.gene056953:CDS |
| CGGTGAGGTGGCGGTGGTGG+TGG | 0.378884 | 8.4:+15354910 | MS.gene056953:intron |
| ATAGGTCTCGAGACCATGAT+AGG | 0.390177 | 8.4:+15355157 | MS.gene056953:CDS |
| TGGCGGTGAGGTGGCGGTGG+TGG | 0.391844 | 8.4:+15354907 | MS.gene056953:intron |
| CCCTGTCACGGTCACGGTCT+CGG | 0.400331 | 8.4:-15355443 | None:intergenic |
| ATGATGAAAGGAATGGAGAT+TGG | 0.413487 | 8.4:+15354977 | MS.gene056953:CDS |
| CCTGTCACGGTCACGGTCTC+GGG | 0.417238 | 8.4:-15355442 | None:intergenic |
| ATAGATCCCGAGACCATGAT+AGG | 0.418281 | 8.4:+15355343 | MS.gene056953:CDS |
| AAAGCGCGTTAGACCGTGAT+AGG | 0.422370 | 8.4:+15355418 | MS.gene056953:CDS |
| ATAGGTCCCGCGACCGTGAT+AGG | 0.424503 | 8.4:+15355139 | MS.gene056953:CDS |
| AGAAAGAAGACTTAATGTTA+TGG | 0.428868 | 8.4:+15356573 | MS.gene056953:CDS |
| AAAGCATGTTAGATGATGAT+TGG | 0.430802 | 8.4:+15355702 | MS.gene056953:CDS |
| CCCGAGACCGTGACCGTGAC+AGG | 0.432306 | 8.4:+15355442 | MS.gene056953:CDS |
| TTCTAAGCTGGAAGAGGGAT+TGG | 0.434291 | 8.4:+15356549 | MS.gene056953:CDS |
| TTCTATCCCTATCCCTATCA+TGG | 0.434809 | 8.4:-15355170 | None:intergenic |
| CCTATCCCTGTCACGGTCTC+GGG | 0.441091 | 8.4:-15355256 | None:intergenic |
| CAAGCTAGAGCAAGTATGTT+AGG | 0.441748 | 8.4:+15355315 | MS.gene056953:CDS |
| TTACATTGGTCAACTGCATC+TGG | 0.451013 | 8.4:-15356780 | None:intergenic |
| ATCAATGACCAACGTACACT+TGG | 0.451190 | 8.4:+15354643 | MS.gene056953:CDS |
| AAAGCATGTTAGTCCGTGAT+AGG | 0.455542 | 8.4:+15355232 | MS.gene056953:CDS |
| GGAGTTACAAAAGCACTCTA+AGG | 0.459318 | 8.4:+15356594 | MS.gene056953:CDS |
| TCGTGGCGGTGAGGTGGCGG+TGG | 0.459789 | 8.4:+15354904 | MS.gene056953:intron |
| GAGACCGTGACATCATGGTT+AGG | 0.463473 | 8.4:+15355633 | MS.gene056953:intron |
| TGATAGGGCTGAAAATGAAC+TGG | 0.463823 | 8.4:+15355736 | MS.gene056953:CDS |
| TGATGAAAGGAATGGAGATT+GGG | 0.465545 | 8.4:+15354978 | MS.gene056953:CDS |
| CTCATCATTGTGGTCCCCAT+TGG | 0.467282 | 8.4:-15356036 | None:intergenic |
| CGAGACCAAGATTATGATCA+TGG | 0.478575 | 8.4:+15355027 | MS.gene056953:CDS |
| AGAGATCTCGAGACCGTGAT+AGG | 0.480387 | 8.4:+15355121 | MS.gene056953:CDS |
| GTAATGAGAAAGATGGATAC+AGG | 0.480470 | 8.4:+15355049 | MS.gene056953:CDS |
| AAAGATGGATACAGGAATAG+AGG | 0.481913 | 8.4:+15355057 | MS.gene056953:CDS |
| ACAGGAATAGAGGCAGTGAT+TGG | 0.482052 | 8.4:+15355067 | MS.gene056953:CDS |
| ATAGTCCATCAGATTCCAAT+GGG | 0.482340 | 8.4:+15356021 | MS.gene056953:CDS |
| TTCTATCCCTATCCCTATCA+TGG | 0.483071 | 8.4:-15355356 | None:intergenic |
| CCCGAGACCGTGACAGGGAT+AGG | 0.483596 | 8.4:+15355256 | MS.gene056953:CDS |
| TGTTTCATCAGTGGCGTCGA+AGG | 0.487655 | 8.4:-15354433 | None:intergenic |
| ACTGGAAAACAGCAGGGTAC+AGG | 0.494266 | 8.4:+15355754 | MS.gene056953:CDS |
| ATAGGTCCCGAGACCGTGAC+AGG | 0.495188 | 8.4:+15355250 | MS.gene056953:CDS |
| TCGAGTCCAATCACCACCTC+TGG | 0.499545 | 8.4:-15355091 | None:intergenic |
| ATTGGACCAGAGGTGGTGAT+TGG | 0.502244 | 8.4:+15355085 | MS.gene056953:CDS |
| ACAGGGTGGAGATGTGGATA+AGG | 0.508614 | 8.4:+15355772 | MS.gene056953:CDS |
| CCTATCCCTATCATGGTCTC+GGG | 0.509297 | 8.4:-15355349 | None:intergenic |
| AGACCGTGACATCATGGTTA+GGG | 0.509461 | 8.4:+15355634 | MS.gene056953:intron |
| CATCATAATGATGAAAGGAA+TGG | 0.517662 | 8.4:+15354970 | MS.gene056953:CDS |
| CCCGAGACCATGATAGGGAT+AGG | 0.517941 | 8.4:+15355349 | MS.gene056953:CDS |
| CACGGTCTCGGGACCTATCA+CGG | 0.518091 | 8.4:-15355431 | None:intergenic |
| AAAATGAACTGGAAAACAGC+AGG | 0.521165 | 8.4:+15355747 | MS.gene056953:CDS |
| CTCGAGACCATGATAGGGAT+AGG | 0.523344 | 8.4:+15355163 | MS.gene056953:CDS |
| TTGTAACTTTCACAAACCCT+AGG | 0.525397 | 8.4:+15354680 | MS.gene056953:CDS |
| TAGCATCAATTGCAGACCTA+GGG | 0.528965 | 8.4:-15354696 | None:intergenic |
| CACGGTCTCGGGACCTATCA+CGG | 0.531377 | 8.4:-15355245 | None:intergenic |
| GATAGCTCCATTTACGTTGG+TGG | 0.531498 | 8.4:+15354405 | MS.gene056953:CDS |
| GATCATGGTAATGAGAAAGA+TGG | 0.531558 | 8.4:+15355042 | MS.gene056953:CDS |
| CTGGATCCACATCTAAGTTA+CGG | 0.535060 | 8.4:-15355796 | None:intergenic |
| TCAGGTTTCTAAGCTGGAAG+AGG | 0.536137 | 8.4:+15356543 | MS.gene056953:intron |
| TCCCCGAGACCGTGACATCA+TGG | 0.537070 | 8.4:+15355628 | MS.gene056953:intron |
| CCGAGACCGTGACAGGGATA+GGG | 0.537071 | 8.4:+15355257 | MS.gene056953:CDS |
| CACGGTCGCGGGACCTATCA+CGG | 0.541776 | 8.4:-15355134 | None:intergenic |
| CTCGAGACCTATCACGGTCG+CGG | 0.542402 | 8.4:-15355146 | None:intergenic |
| CTGGAAAACAGCAGGGTACA+GGG | 0.545302 | 8.4:+15355755 | MS.gene056953:CDS |
| CAGGTTTCTAAGCTGGAAGA+GGG | 0.546464 | 8.4:+15356544 | MS.gene056953:intron |
| ATAGCATCAATTGCAGACCT+AGG | 0.550720 | 8.4:-15354697 | None:intergenic |
| GACTACCTTGACATCAAGAA+TGG | 0.552219 | 8.4:-15354484 | None:intergenic |
| TTATACCCCTGTCACGGTCA+CGG | 0.557856 | 8.4:-15355449 | None:intergenic |
| CCGAGACCATGATAGGGATA+GGG | 0.559495 | 8.4:+15355350 | MS.gene056953:CDS |
| GAGCATATGCAAAATTATGA+TGG | 0.562214 | 8.4:+15355198 | MS.gene056953:CDS |
| CAGGGTACAGGGTGGAGATG+TGG | 0.563252 | 8.4:+15355766 | MS.gene056953:CDS |
| TTCTATCCCTATCCCTGTCA+CGG | 0.566463 | 8.4:-15355263 | None:intergenic |
| GAACACATGCTAGATTATGA+TGG | 0.568841 | 8.4:+15355291 | MS.gene056953:CDS |
| TGGTCCCCATTGGAATCTGA+TGG | 0.575643 | 8.4:-15356026 | None:intergenic |
| GTTTCATCAGTGGCGTCGAA+GGG | 0.576277 | 8.4:-15354432 | None:intergenic |
| TCTTACTCGATGTTTCTCCT+CGG | 0.578233 | 8.4:-15355881 | None:intergenic |
| ATTATCATCATAATGATGAA+AGG | 0.578991 | 8.4:+15354965 | MS.gene056953:CDS |
| AATAGTCCATCAGATTCCAA+TGG | 0.582473 | 8.4:+15356020 | MS.gene056953:CDS |
| AGGAATGGAGATTGGGATCG+TGG | 0.582856 | 8.4:+15354985 | MS.gene056953:CDS |
| TCGAGACCATGATAGGGATA+GGG | 0.583018 | 8.4:+15355164 | MS.gene056953:CDS |
| TGGCGCCATTCTTGATGTCA+AGG | 0.589109 | 8.4:+15354479 | MS.gene056953:CDS |
| CATGGTCTCGAGACCTATCA+CGG | 0.589442 | 8.4:-15355152 | None:intergenic |
| TTGGAATCATGACGGTGATA+GGG | 0.593640 | 8.4:+15355721 | MS.gene056953:CDS |
| TCGAGACCTATCACGGTCGC+GGG | 0.594735 | 8.4:-15355145 | None:intergenic |
| GGCAGTGATTGGACCAGAGG+TGG | 0.596616 | 8.4:+15355078 | MS.gene056953:CDS |
| CCGAGACCGTGACCGTGACA+GGG | 0.596911 | 8.4:+15355443 | MS.gene056953:CDS |
| TCAATGACCAACGTACACTT+GGG | 0.603480 | 8.4:+15354644 | MS.gene056953:CDS |
| TAGATCCCGAGACCATGATA+GGG | 0.613104 | 8.4:+15355344 | MS.gene056953:CDS |
| AGTGCGAATTGTTTCATCAG+TGG | 0.616718 | 8.4:-15354442 | None:intergenic |
| TAAGGACCGTAACTTAGATG+TGG | 0.622168 | 8.4:+15355790 | MS.gene056953:CDS |
| TCAGTTCCACAAAATGACAC+TGG | 0.624699 | 8.4:+15354377 | None:intergenic |
| AGAGGCAGTGATTGGACCAG+AGG | 0.630012 | 8.4:+15355075 | MS.gene056953:CDS |
| AGCATTTCCCAAGTGTACGT+TGG | 0.632194 | 8.4:-15354651 | None:intergenic |
| GATGCTATCAACGATATGAA+CGG | 0.633466 | 8.4:+15354712 | MS.gene056953:CDS |
| TATCCCTAACCATGATGTCA+CGG | 0.634194 | 8.4:-15355637 | None:intergenic |
| ATCACATTACCTCATCATTG+TGG | 0.638871 | 8.4:-15356046 | None:intergenic |
| TAGGTCTCGAGACCATGATA+GGG | 0.644021 | 8.4:+15355158 | MS.gene056953:CDS |
| GATGATAGCTCCATTTACGT+TGG | 0.659955 | 8.4:+15354402 | MS.gene056953:CDS |
| AGGTAGAAGATGAATTAGAG+AGG | 0.662402 | 8.4:+15356202 | MS.gene056953:intron |
| CGAGACCGTGACCGTGACAG+GGG | 0.664208 | 8.4:+15355444 | MS.gene056953:CDS |
| CAATGGGGACCACAATGATG+AGG | 0.667084 | 8.4:+15356037 | MS.gene056953:CDS |
| AAATGAACTGGAAAACAGCA+GGG | 0.689851 | 8.4:+15355748 | MS.gene056953:CDS |
| ATATTAACCGCAGAAACGGG+AGG | 0.695680 | 8.4:+15356720 | MS.gene056953:intron |
| GATGATGATTGGAATCATGA+CGG | 0.709264 | 8.4:+15355713 | MS.gene056953:CDS |
| TAGGTCCCGAGACCGTGACA+GGG | 0.714552 | 8.4:+15355251 | MS.gene056953:CDS |
| AATGGAGATTGGGATCGTGG+CGG | 0.727702 | 8.4:+15354988 | MS.gene056953:CDS |
| GAAAACAGCAGGGTACAGGG+TGG | 0.744053 | 8.4:+15355758 | MS.gene056953:CDS |
| TAGTCCATCAGATTCCAATG+GGG | 0.775487 | 8.4:+15356022 | MS.gene056953:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATTAAATAATAACA+AGG | - | chr8.4:15354547-15354566 | None:intergenic | 10.0% |
| !! | AAGAAATTAAATAATAACAA+GGG | - | chr8.4:15354546-15354565 | None:intergenic | 10.0% |
| !! | AAACTAAAATGAATGAATAA+TGG | + | chr8.4:15356273-15356292 | MS.gene056953:intron | 15.0% |
| !! | AATAATCAATTCAAGTAATT+GGG | + | chr8.4:15354571-15354590 | MS.gene056953:intron | 15.0% |
| !! | TAATAATCAATTCAAGTAAT+TGG | + | chr8.4:15354570-15354589 | MS.gene056953:intron | 15.0% |
| !! | TTATCAAACATTCAAATATT+GGG | - | chr8.4:15356407-15356426 | None:intergenic | 15.0% |
| !! | TTTATCAAACATTCAAATAT+TGG | - | chr8.4:15356408-15356427 | None:intergenic | 15.0% |
| !! | AGTTTATTTGTGTTAATGTT+TGG | + | chr8.4:15354774-15354793 | MS.gene056953:intron | 20.0% |
| !! | ATTATCATCATAATGATGAA+AGG | + | chr8.4:15354965-15354984 | MS.gene056953:CDS | 20.0% |
| !! | TAAATGATATTGCTAACATT+GGG | + | chr8.4:15356840-15356859 | MS.gene056953:intron | 20.0% |
| !! | TTAAAACTTAGACATTACAT+TGG | - | chr8.4:15356797-15356816 | None:intergenic | 20.0% |
| !!! | ATAATGGAAATTTGTCAATA+TGG | + | chr8.4:15356289-15356308 | MS.gene056953:intron | 20.0% |
| ! | AGAAAGAAGACTTAATGTTA+TGG | + | chr8.4:15356573-15356592 | MS.gene056953:CDS | 25.0% |
| ! | ATGTCACAGAAAATTAACAT+TGG | - | chr8.4:15355910-15355929 | None:intergenic | 25.0% |
| ! | GTAAATGATATTGCTAACAT+TGG | + | chr8.4:15356839-15356858 | MS.gene056953:intron | 25.0% |
| ! | GTTATGAATCAGACTATTAA+TGG | + | chr8.4:15354851-15354870 | MS.gene056953:intron | 25.0% |
| !! | ATCATAATTTTGCATATGCT+CGG | - | chr8.4:15355199-15355218 | None:intergenic | 25.0% |
| !! | ATGTTTGGTAATTATTGTTG+TGG | + | chr8.4:15354789-15354808 | MS.gene056953:intron | 25.0% |
| AAAGCATGTTAGATGATGAT+TGG | + | chr8.4:15355702-15355721 | MS.gene056953:CDS | 30.0% | |
| AACATAAAAAAGAACAACCG+AGG | + | chr8.4:15355864-15355883 | MS.gene056953:CDS | 30.0% | |
| ACTGCTTGATCAACTAAAAA+AGG | + | chr8.4:15356233-15356252 | MS.gene056953:CDS | 30.0% | |
| ATATTCATCTGATTCCAACA+AGG | + | chr8.4:15356452-15356471 | MS.gene056953:intron | 30.0% | |
| ATGCTTGGAAATAAATGAGA+AGG | - | chr8.4:15356622-15356641 | None:intergenic | 30.0% | |
| CAATCTCAAAATTTGATGCT+TGG | - | chr8.4:15356637-15356656 | None:intergenic | 30.0% | |
| CATCATAATGATGAAAGGAA+TGG | + | chr8.4:15354970-15354989 | MS.gene056953:CDS | 30.0% | |
| CATTACCATGATCATAATCT+TGG | - | chr8.4:15355035-15355054 | None:intergenic | 30.0% | |
| GAATGTTTGATAAATGCGTT+AGG | + | chr8.4:15356414-15356433 | MS.gene056953:intron | 30.0% | |
| GAGCATATGCAAAATTATGA+TGG | + | chr8.4:15355198-15355217 | MS.gene056953:CDS | 30.0% | |
| GTTAATTTCCAACTGTTCTT+TGG | + | chr8.4:15355932-15355951 | MS.gene056953:intron | 30.0% | |
| TAAGTAAACCAAAGAACAGT+TGG | - | chr8.4:15355943-15355962 | None:intergenic | 30.0% | |
| TATTCATCTGATTCCAACAA+GGG | + | chr8.4:15356453-15356472 | MS.gene056953:intron | 30.0% | |
| ! | GGTTATGATTTGAGAGTTTT+TGG | + | chr8.4:15354815-15354834 | MS.gene056953:intron | 30.0% |
| ! | TGTTCGTCAAAACTTTTATC+AGG | - | chr8.4:15355848-15355867 | None:intergenic | 30.0% |
| ! | TTTTCTCCTCTTTTATGTGT+TGG | + | chr8.4:15356497-15356516 | MS.gene056953:intron | 30.0% |
| !!! | CTTGTTTTTACTTGCTTTTG+TGG | + | chr8.4:15356174-15356193 | MS.gene056953:intron | 30.0% |
| AAAATGAACTGGAAAACAGC+AGG | + | chr8.4:15355747-15355766 | MS.gene056953:CDS | 35.0% | |
| AAAGATGGATACAGGAATAG+AGG | + | chr8.4:15355057-15355076 | MS.gene056953:CDS | 35.0% | |
| AAAGCATGTTAGATCGTGAT+GGG | + | chr8.4:15355511-15355530 | MS.gene056953:intron | 35.0% | |
| AAATGAACTGGAAAACAGCA+GGG | + | chr8.4:15355748-15355767 | MS.gene056953:CDS | 35.0% | |
| AAGATATTAACCGCAGAAAC+GGG | + | chr8.4:15356717-15356736 | MS.gene056953:intron | 35.0% | |
| AATAGTCCATCAGATTCCAA+TGG | + | chr8.4:15356020-15356039 | MS.gene056953:CDS | 35.0% | |
| AGGTAGAAGATGAATTAGAG+AGG | + | chr8.4:15356202-15356221 | MS.gene056953:intron | 35.0% | |
| ATAGTCCATCAGATTCCAAT+GGG | + | chr8.4:15356021-15356040 | MS.gene056953:CDS | 35.0% | |
| ATATTGCTAACATTGGGCTT+GGG | + | chr8.4:15356846-15356865 | MS.gene056953:intron | 35.0% | |
| ATCACATTACCTCATCATTG+TGG | - | chr8.4:15356049-15356068 | None:intergenic | 35.0% | |
| ATCCAGACAAAAAGATGGAT+AGG | + | chr8.4:15355813-15355832 | MS.gene056953:CDS | 35.0% | |
| ATGATGAAAGGAATGGAGAT+TGG | + | chr8.4:15354977-15354996 | MS.gene056953:CDS | 35.0% | |
| ATTCAAACTGCAGGAAAATC+AGG | - | chr8.4:15355988-15356007 | None:intergenic | 35.0% | |
| ATTTGTCACATTCAAACTGC+AGG | - | chr8.4:15355997-15356016 | None:intergenic | 35.0% | |
| GAACACATGCTAGATTATGA+TGG | + | chr8.4:15355291-15355310 | MS.gene056953:CDS | 35.0% | |
| GAAGATATTAACCGCAGAAA+CGG | + | chr8.4:15356716-15356735 | MS.gene056953:intron | 35.0% | |
| GATGATGATTGGAATCATGA+CGG | + | chr8.4:15355713-15355732 | MS.gene056953:CDS | 35.0% | |
| GATGCTATCAACGATATGAA+CGG | + | chr8.4:15354712-15354731 | MS.gene056953:CDS | 35.0% | |
| GTAATGAGAAAGATGGATAC+AGG | + | chr8.4:15355049-15355068 | MS.gene056953:CDS | 35.0% | |
| TCTGAACATGTGCATTTCAA+AGG | + | chr8.4:15356378-15356397 | MS.gene056953:intron | 35.0% | |
| TGATGAAAGGAATGGAGATT+GGG | + | chr8.4:15354978-15354997 | MS.gene056953:CDS | 35.0% | |
| TGTGTTCAAAGTAAGGATGT+TGG | - | chr8.4:15356672-15356691 | None:intergenic | 35.0% | |
| TTAAAGATTAGAGCCCTTGT+TGG | - | chr8.4:15356469-15356488 | None:intergenic | 35.0% | |
| TTGTAACTTTCACAAACCCT+AGG | + | chr8.4:15354680-15354699 | MS.gene056953:CDS | 35.0% | |
| ! | AAATAAACCGAGACTGATTC+TGG | + | chr8.4:15356140-15356159 | MS.gene056953:intron | 35.0% |
| ! | ATCCTATCCATCTTTTTGTC+TGG | - | chr8.4:15355818-15355837 | None:intergenic | 35.0% |
| ! | ATTTTGTCAGGTTTCTAAGC+TGG | + | chr8.4:15356537-15356556 | MS.gene056953:intron | 35.0% |
| ! | CAGCTTTTGTGTTCAAAGTA+AGG | - | chr8.4:15356679-15356698 | None:intergenic | 35.0% |
| ! | CTGAAAAGTGGAATTTTGTC+AGG | + | chr8.4:15356525-15356544 | MS.gene056953:intron | 35.0% |
| ! | GATCATGGTAATGAGAAAGA+TGG | + | chr8.4:15355042-15355061 | MS.gene056953:CDS | 35.0% |
| !!! | ACTGGTTTTAAGTCTTTCTG+TGG | - | chr8.4:15356917-15356936 | None:intergenic | 35.0% |
| AAAGCATGTTAGTCCGTGAT+AGG | + | chr8.4:15355232-15355251 | MS.gene056953:CDS | 40.0% | |
| AAATGTGCCAGAATCAGTCT+CGG | - | chr8.4:15356150-15356169 | None:intergenic | 40.0% | |
| AGAAAACATTCATGCAGCTG+AGG | - | chr8.4:15356880-15356899 | None:intergenic | 40.0% | |
| AGAAGAGTTGAGCATTTGCA+AGG | + | chr8.4:15355562-15355581 | MS.gene056953:intron | 40.0% | |
| AGTGCGAATTGTTTCATCAG+TGG | - | chr8.4:15354445-15354464 | None:intergenic | 40.0% | |
| ATAGCATCAATTGCAGACCT+AGG | - | chr8.4:15354700-15354719 | None:intergenic | 40.0% | |
| ATCAATGACCAACGTACACT+TGG | + | chr8.4:15354643-15354662 | MS.gene056953:CDS | 40.0% | |
| ATTGGAATCATGACGGTGAT+AGG | + | chr8.4:15355720-15355739 | MS.gene056953:CDS | 40.0% | |
| CAAGCTAGAGCAAGTATGTT+AGG | + | chr8.4:15355315-15355334 | MS.gene056953:CDS | 40.0% | |
| CCCCATTAACTTTAACCACA+CGG | - | chr8.4:15354877-15354896 | None:intergenic | 40.0% | |
| CCGTGTGGTTAAAGTTAATG+GGG | + | chr8.4:15354874-15354893 | MS.gene056953:intron | 40.0% | |
| CGAGACCAAGATTATGATCA+TGG | + | chr8.4:15355027-15355046 | MS.gene056953:CDS | 40.0% | |
| CGCACTGTCTTCAATTTGTA+TGG | + | chr8.4:15354459-15354478 | MS.gene056953:CDS | 40.0% | |
| CTGGATCCACATCTAAGTTA+CGG | - | chr8.4:15355799-15355818 | None:intergenic | 40.0% | |
| GACTACCTTGACATCAAGAA+TGG | - | chr8.4:15354487-15354506 | None:intergenic | 40.0% | |
| GATATTGCTAACATTGGGCT+TGG | + | chr8.4:15356845-15356864 | MS.gene056953:intron | 40.0% | |
| GATGATAGCTCCATTTACGT+TGG | + | chr8.4:15354402-15354421 | MS.gene056953:CDS | 40.0% | |
| GCCGTGTGGTTAAAGTTAAT+GGG | + | chr8.4:15354873-15354892 | MS.gene056953:intron | 40.0% | |
| TAAGGACCGTAACTTAGATG+TGG | + | chr8.4:15355790-15355809 | MS.gene056953:CDS | 40.0% | |
| TAGCATCAATTGCAGACCTA+GGG | - | chr8.4:15354699-15354718 | None:intergenic | 40.0% | |
| TAGTCCATCAGATTCCAATG+GGG | + | chr8.4:15356022-15356041 | MS.gene056953:CDS | 40.0% | |
| TATCCCTAACCATGATGTCA+CGG | - | chr8.4:15355640-15355659 | None:intergenic | 40.0% | |
| TCAATGACCAACGTACACTT+GGG | + | chr8.4:15354644-15354663 | MS.gene056953:CDS | 40.0% | |
| TCTTACTCGATGTTTCTCCT+CGG | - | chr8.4:15355884-15355903 | None:intergenic | 40.0% | |
| TGATAGGGCTGAAAATGAAC+TGG | + | chr8.4:15355736-15355755 | MS.gene056953:CDS | 40.0% | |
| TGGTAATTATTGTTGTGGCG+TGG | + | chr8.4:15354794-15354813 | MS.gene056953:intron | 40.0% | |
| TGGTTAAAGTTAATGGGGTG+AGG | + | chr8.4:15354879-15354898 | MS.gene056953:intron | 40.0% | |
| TGTGGATCCAGACAAAAAGA+TGG | + | chr8.4:15355808-15355827 | MS.gene056953:CDS | 40.0% | |
| TTACATTGGTCAACTGCATC+TGG | - | chr8.4:15356783-15356802 | None:intergenic | 40.0% | |
| TTCTACTCCTATCTCTGTCA+CGG | - | chr8.4:15355546-15355565 | None:intergenic | 40.0% | |
| TTCTATCCCTATCCCTATCA+TGG | - | chr8.4:15355173-15355192 | None:intergenic | 40.0% | |
| TTGGAATCATGACGGTGATA+GGG | + | chr8.4:15355721-15355740 | MS.gene056953:CDS | 40.0% | |
| ! | CAACTTTTATACCCCTGTCA+CGG | - | chr8.4:15355458-15355477 | None:intergenic | 40.0% |
| ! | GAAAGCATGTTAGATCGTGA+TGG | + | chr8.4:15355510-15355529 | MS.gene056953:intron | 40.0% |
| ! | GTGGTGGCAGATCAAATTTT+GGG | + | chr8.4:15354926-15354945 | MS.gene056953:CDS | 40.0% |
| ! | TCTCCTCTTTTATGTGTTGG+TGG | + | chr8.4:15356500-15356519 | MS.gene056953:intron | 40.0% |
| !! | GGAGTTACAAAAGCACTCTA+AGG | + | chr8.4:15356594-15356613 | MS.gene056953:CDS | 40.0% |
| !! | TACTTGCTTTTGTGGTCTTC+AGG | + | chr8.4:15356182-15356201 | MS.gene056953:intron | 40.0% |
| AAAGCATGTTAGACCGCGAT+GGG | + | chr8.4:15355605-15355624 | MS.gene056953:intron | 45.0% | |
| ACAGGAATAGAGGCAGTGAT+TGG | + | chr8.4:15355067-15355086 | MS.gene056953:CDS | 45.0% | |
| AGACCGTGACATCATGGTTA+GGG | + | chr8.4:15355634-15355653 | MS.gene056953:intron | 45.0% | |
| AGCATTTCCCAAGTGTACGT+TGG | - | chr8.4:15354654-15354673 | None:intergenic | 45.0% | |
| ATAGATCCCGAGACCATGAT+AGG | + | chr8.4:15355343-15355362 | MS.gene056953:CDS | 45.0% | |
| ATAGGTCTCGAGACCATGAT+AGG | + | chr8.4:15355157-15355176 | MS.gene056953:CDS | 45.0% | |
| ATATTAACCGCAGAAACGGG+AGG | + | chr8.4:15356720-15356739 | MS.gene056953:intron | 45.0% | |
| CAGGTTTCTAAGCTGGAAGA+GGG | + | chr8.4:15356544-15356563 | MS.gene056953:intron | 45.0% | |
| GATAGCTCCATTTACGTTGG+TGG | + | chr8.4:15354405-15354424 | MS.gene056953:CDS | 45.0% | |
| GCACCACCAACACATAAAAG+AGG | - | chr8.4:15356506-15356525 | None:intergenic | 45.0% | |
| GGCCGTGTGGTTAAAGTTAA+TGG | + | chr8.4:15354872-15354891 | MS.gene056953:intron | 45.0% | |
| TAACCATGATGTCACGGTCT+CGG | - | chr8.4:15355634-15355653 | None:intergenic | 45.0% | |
| TAGATCCCGAGACCATGATA+GGG | + | chr8.4:15355344-15355363 | MS.gene056953:CDS | 45.0% | |
| TAGGTCTCGAGACCATGATA+GGG | + | chr8.4:15355158-15355177 | MS.gene056953:CDS | 45.0% | |
| TCAGACTATTAATGGCCGTG+TGG | + | chr8.4:15354859-15354878 | MS.gene056953:intron | 45.0% | |
| TCAGGTTTCTAAGCTGGAAG+AGG | + | chr8.4:15356543-15356562 | MS.gene056953:intron | 45.0% | |
| TCGAGACCATGATAGGGATA+GGG | + | chr8.4:15355164-15355183 | MS.gene056953:CDS | 45.0% | |
| TTCTAAGCTGGAAGAGGGAT+TGG | + | chr8.4:15356549-15356568 | MS.gene056953:CDS | 45.0% | |
| TTCTATCCCTATCCCTGTCA+CGG | - | chr8.4:15355266-15355285 | None:intergenic | 45.0% | |
| !! | GGTGGTGGCAGATCAAATTT+TGG | + | chr8.4:15354925-15354944 | MS.gene056953:CDS | 45.0% |
| !! | AAAAAAAAAATACAATAATA+TGG | - | chr8.4:15354754-15354773 | None:intergenic | 5.0% |
| AAAGCGCGTTAGACCGTGAT+AGG | + | chr8.4:15355418-15355437 | MS.gene056953:CDS | 50.0% | |
| AACCATGATGTCACGGTCTC+GGG | - | chr8.4:15355633-15355652 | None:intergenic | 50.0% | |
| AATGGAGATTGGGATCGTGG+CGG | + | chr8.4:15354988-15355007 | MS.gene056953:CDS | 50.0% | |
| ACAGGGTGGAGATGTGGATA+AGG | + | chr8.4:15355772-15355791 | MS.gene056953:CDS | 50.0% | |
| ACTGGAAAACAGCAGGGTAC+AGG | + | chr8.4:15355754-15355773 | MS.gene056953:CDS | 50.0% | |
| AGAGATCTCGAGACCGTGAT+AGG | + | chr8.4:15355121-15355140 | MS.gene056953:CDS | 50.0% | |
| AGGAATGGAGATTGGGATCG+TGG | + | chr8.4:15354985-15355004 | MS.gene056953:CDS | 50.0% | |
| ATTGGACCAGAGGTGGTGAT+TGG | + | chr8.4:15355085-15355104 | MS.gene056953:CDS | 50.0% | |
| CAATGGGGACCACAATGATG+AGG | + | chr8.4:15356037-15356056 | MS.gene056953:CDS | 50.0% | |
| CATGGTCTCGAGACCTATCA+CGG | - | chr8.4:15355155-15355174 | None:intergenic | 50.0% | |
| CCCTATCCCTATCATGGTCT+CGG | - | chr8.4:15355167-15355186 | None:intergenic | 50.0% | |
| CCGAGACCATGATAGGGATA+GGG | + | chr8.4:15355350-15355369 | MS.gene056953:CDS | 50.0% | |
| CCTATCCCTATCATGGTCTC+GGG | - | chr8.4:15355166-15355185 | None:intergenic | 50.0% | |
| CTCATCATTGTGGTCCCCAT+TGG | - | chr8.4:15356039-15356058 | None:intergenic | 50.0% | |
| CTCGAGACCATGATAGGGAT+AGG | + | chr8.4:15355163-15355182 | MS.gene056953:CDS | 50.0% | |
| CTGGAAAACAGCAGGGTACA+GGG | + | chr8.4:15355755-15355774 | MS.gene056953:CDS | 50.0% | |
| GAGACCGTGACATCATGGTT+AGG | + | chr8.4:15355633-15355652 | MS.gene056953:intron | 50.0% | |
| GGGAAGACCACCAACGTAAA+TGG | - | chr8.4:15354415-15354434 | None:intergenic | 50.0% | |
| TCCTATCTCTGTCACGGTCT+CGG | - | chr8.4:15355540-15355559 | None:intergenic | 50.0% | |
| TGGCGCCATTCTTGATGTCA+AGG | + | chr8.4:15354479-15354498 | MS.gene056953:CDS | 50.0% | |
| TGGTCCCCATTGGAATCTGA+TGG | - | chr8.4:15356029-15356048 | None:intergenic | 50.0% | |
| TTATACCCCTGTCACGGTCA+CGG | - | chr8.4:15355452-15355471 | None:intergenic | 50.0% | |
| ! | ATGGCGATGTCTGCTCTAGA+AGG | + | chr8.4:15356308-15356327 | MS.gene056953:intron | 50.0% |
| ! | GAAAGCATGTTAGACCGCGA+TGG | + | chr8.4:15355604-15355623 | MS.gene056953:intron | 50.0% |
| ! | GTTTCATCAGTGGCGTCGAA+GGG | - | chr8.4:15354435-15354454 | None:intergenic | 50.0% |
| ! | TGTTTCATCAGTGGCGTCGA+AGG | - | chr8.4:15354436-15354455 | None:intergenic | 50.0% |
| !! | GTGTTGGTGGTGCTGAAAAG+TGG | + | chr8.4:15356513-15356532 | MS.gene056953:intron | 50.0% |
| ACAGCATCCTCCCGTTTCTG+CGG | - | chr8.4:15356730-15356749 | None:intergenic | 55.0% | |
| ACCATGATGTCACGGTCTCG+GGG | - | chr8.4:15355632-15355651 | None:intergenic | 55.0% | |
| AGAGGCAGTGATTGGACCAG+AGG | + | chr8.4:15355075-15355094 | MS.gene056953:CDS | 55.0% | |
| CCCGAGACCATGATAGGGAT+AGG | + | chr8.4:15355349-15355368 | MS.gene056953:CDS | 55.0% | |
| CCTATCTCTGTCACGGTCTC+GGG | - | chr8.4:15355539-15355558 | None:intergenic | 55.0% | |
| CTATCTCTGTCACGGTCTCG+GGG | - | chr8.4:15355538-15355557 | None:intergenic | 55.0% | |
| GAAAACAGCAGGGTACAGGG+TGG | + | chr8.4:15355758-15355777 | MS.gene056953:CDS | 55.0% | |
| GTTAATGGGGTGAGGTCTCG+TGG | + | chr8.4:15354887-15354906 | MS.gene056953:intron | 55.0% | |
| TCGAGTCCAATCACCACCTC+TGG | - | chr8.4:15355094-15355113 | None:intergenic | 55.0% | |
| AATGGGGTGAGGTCTCGTGG+CGG | + | chr8.4:15354890-15354909 | MS.gene056953:intron | 60.0% | |
| ATAGGTCCCGAGACCGTGAC+AGG | + | chr8.4:15355250-15355269 | MS.gene056953:CDS | 60.0% | |
| ATAGGTCCCGCGACCGTGAT+AGG | + | chr8.4:15355139-15355158 | MS.gene056953:CDS | 60.0% | |
| CACGGTCTCGGGACCTATCA+CGG | - | chr8.4:15355248-15355267 | None:intergenic | 60.0% | |
| CAGGGTACAGGGTGGAGATG+TGG | + | chr8.4:15355766-15355785 | MS.gene056953:CDS | 60.0% | |
| CCCGAGACCGTGACAGAGAT+AGG | + | chr8.4:15355536-15355555 | MS.gene056953:intron | 60.0% | |
| CCCTATCCCTGTCACGGTCT+CGG | - | chr8.4:15355260-15355279 | None:intergenic | 60.0% | |
| CCGAGACCGTGACAGGGATA+GGG | + | chr8.4:15355257-15355276 | MS.gene056953:CDS | 60.0% | |
| CCTATCCCTGTCACGGTCTC+GGG | - | chr8.4:15355259-15355278 | None:intergenic | 60.0% | |
| CTCGAGACCTATCACGGTCG+CGG | - | chr8.4:15355149-15355168 | None:intergenic | 60.0% | |
| GGCAGTGATTGGACCAGAGG+TGG | + | chr8.4:15355078-15355097 | MS.gene056953:CDS | 60.0% | |
| TAGGTCCCGAGACCGTGACA+GGG | + | chr8.4:15355251-15355270 | MS.gene056953:CDS | 60.0% | |
| TCCCCGAGACCGTGACATCA+TGG | + | chr8.4:15355628-15355647 | MS.gene056953:intron | 60.0% | |
| TCGAGACCTATCACGGTCGC+GGG | - | chr8.4:15355148-15355167 | None:intergenic | 60.0% | |
| CACGGTCGCGGGACCTATCA+CGG | - | chr8.4:15355137-15355156 | None:intergenic | 65.0% | |
| CCCGAGACCGTGACAGGGAT+AGG | + | chr8.4:15355256-15355275 | MS.gene056953:CDS | 65.0% | |
| CCCTGTCACGGTCACGGTCT+CGG | - | chr8.4:15355446-15355465 | None:intergenic | 65.0% | |
| CCGAGACCGTGACCGTGACA+GGG | + | chr8.4:15355443-15355462 | MS.gene056953:CDS | 65.0% | |
| CCTGTCACGGTCACGGTCTC+GGG | - | chr8.4:15355445-15355464 | None:intergenic | 65.0% | |
| CGAGACCGTGACCGTGACAG+GGG | + | chr8.4:15355444-15355463 | MS.gene056953:CDS | 65.0% | |
| ACGGTCTCGGGGACCCATCG+CGG | - | chr8.4:15355621-15355640 | None:intergenic | 70.0% | |
| CCCGAGACCGTGACCGTGAC+AGG | + | chr8.4:15355442-15355461 | MS.gene056953:CDS | 70.0% | |
| GAGGTCTCGTGGCGGTGAGG+TGG | + | chr8.4:15354898-15354917 | MS.gene056953:intron | 70.0% | |
| GGTGAGGTCTCGTGGCGGTG+AGG | + | chr8.4:15354895-15354914 | MS.gene056953:intron | 70.0% | |
| GTCTCGTGGCGGTGAGGTGG+CGG | + | chr8.4:15354901-15354920 | MS.gene056953:intron | 70.0% | |
| ! | CGGTGAGGTGGCGGTGGTGG+TGG | + | chr8.4:15354910-15354929 | MS.gene056953:intron | 75.0% |
| ! | TCGTGGCGGTGAGGTGGCGG+TGG | + | chr8.4:15354904-15354923 | MS.gene056953:intron | 75.0% |
| ! | TGGCGGTGAGGTGGCGGTGG+TGG | + | chr8.4:15354907-15354926 | MS.gene056953:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 15354390 | 15356951 | 15354390 | ID=MS.gene056953 |
| chr8.4 | mRNA | 15354390 | 15356951 | 15354390 | ID=MS.gene056953.t1;Parent=MS.gene056953 |
| chr8.4 | exon | 15354390 | 15354500 | 15354390 | ID=MS.gene056953.t1.exon1;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15354390 | 15354500 | 15354390 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15354640 | 15354742 | 15354640 | ID=MS.gene056953.t1.exon2;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15354640 | 15354742 | 15354640 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15354917 | 15355465 | 15354917 | ID=MS.gene056953.t1.exon3;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15354917 | 15355465 | 15354917 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15355636 | 15355897 | 15355636 | ID=MS.gene056953.t1.exon4;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15355636 | 15355897 | 15355636 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15356001 | 15356058 | 15356001 | ID=MS.gene056953.t1.exon5;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15356001 | 15356058 | 15356001 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15356204 | 15356260 | 15356204 | ID=MS.gene056953.t1.exon6;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15356204 | 15356260 | 15356204 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15356547 | 15356615 | 15356547 | ID=MS.gene056953.t1.exon7;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15356547 | 15356615 | 15356547 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15356733 | 15356798 | 15356733 | ID=MS.gene056953.t1.exon8;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15356733 | 15356798 | 15356733 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| chr8.4 | exon | 15356883 | 15356951 | 15356883 | ID=MS.gene056953.t1.exon9;Parent=MS.gene056953.t1 |
| chr8.4 | CDS | 15356883 | 15356951 | 15356883 | ID=cds.MS.gene056953.t1;Parent=MS.gene056953.t1 |
| Gene Sequence |
| Protein sequence |
