Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23185.t1 | AET02191.1 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.80E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23185.t1 | P40941 | 74.8 | 385 | 77 | 3 | 4 | 368 | 1 | 385 | 1.9e-158 | 560.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23185.t1 | G7LDP4 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.3e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049400 | MS.gene23185 | 0.823796 | 1.14E-53 | -1.69E-46 |
| MS.gene049757 | MS.gene23185 | -0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene23185 | 0.879051 | 1.71E-69 | -1.69E-46 |
| MS.gene050315 | MS.gene23185 | -0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene23185 | 0.812505 | 4.10E-51 | -1.69E-46 |
| MS.gene050553 | MS.gene23185 | -0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene050874 | MS.gene23185 | 0.803783 | 2.96E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene23185 | 0.804559 | 2.04E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene23185 | 0.824169 | 9.34E-54 | -1.69E-46 |
| MS.gene052100 | MS.gene23185 | -0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene23185 | -0.812025 | 5.22E-51 | -1.69E-46 |
| MS.gene052540 | MS.gene23185 | 0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene23185 | -0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene055159 | MS.gene23185 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene23185 | -0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene057081 | MS.gene23185 | 0.833667 | 4.67E-56 | -1.69E-46 |
| MS.gene057494 | MS.gene23185 | 0.823065 | 1.69E-53 | -1.69E-46 |
| MS.gene058235 | MS.gene23185 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene23185 | 0.825062 | 5.75E-54 | -1.69E-46 |
| MS.gene059717 | MS.gene23185 | -0.821038 | 4.99E-53 | -1.69E-46 |
| MS.gene059868 | MS.gene23185 | -0.842628 | 2.30E-58 | -1.69E-46 |
| MS.gene060087 | MS.gene23185 | 0.819863 | 9.29E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGCTAAGTCCTTGTTTA+AGG | 0.144348 | 8.1:-66496074 | MS.gene23185:CDS |
| TAATCATCTCATCCTGGTTT+TGG | 0.193782 | 8.1:+66497549 | None:intergenic |
| TTGAAGCCAGTTCTCCTTAC+TGG | 0.211857 | 8.1:-66496776 | MS.gene23185:CDS |
| TTCTTTGCTAGCTTTGGTCT+TGG | 0.283922 | 8.1:-66496232 | MS.gene23185:CDS |
| GGCTTTGAACTTTGCATTCA+AGG | 0.320951 | 8.1:-66497119 | MS.gene23185:CDS |
| GCGGGAGCTGCAACAAAGAT+AGG | 0.324862 | 8.1:+66497671 | None:intergenic |
| CTTCTCCTAACTGTGTCAAT+TGG | 0.336850 | 8.1:+66496172 | None:intergenic |
| CCTCGTTCTTGAGGATTTGT+TGG | 0.337740 | 8.1:+66496095 | None:intergenic |
| GATAGTTTCTTTGCTAGCTT+TGG | 0.347055 | 8.1:-66496238 | MS.gene23185:CDS |
| GCATTACATGCTGGCATCAT+TGG | 0.360534 | 8.1:+66497710 | None:intergenic |
| GCAACATTCTGAACAAGATT+AGG | 0.362542 | 8.1:+66497803 | None:intergenic |
| ACAAGGATGGTTACTGGAAA+TGG | 0.366913 | 8.1:-66497063 | MS.gene23185:CDS |
| AGAAGGACAAGGATGGTTAC+TGG | 0.382727 | 8.1:-66497069 | MS.gene23185:CDS |
| CTTTGTTGTTGACTTTCTCA+TGG | 0.384159 | 8.1:-66497636 | MS.gene23185:CDS |
| CAAAAGCTTAATTCGTTCAA+TGG | 0.387505 | 8.1:+66497574 | None:intergenic |
| CTGGCAACTGATGGTATTGC+TGG | 0.388315 | 8.1:-66496875 | MS.gene23185:CDS |
| ATGTACCAAAGGAGGTCATT+TGG | 0.389033 | 8.1:-66497761 | MS.gene23185:CDS |
| CTCCGTGCCGTCGCTGGTGC+TGG | 0.395301 | 8.1:-66496034 | MS.gene23185:CDS |
| TTGGCCTCAGGAGGTGCTGC+TGG | 0.402435 | 8.1:-66497028 | MS.gene23185:CDS |
| ACAGTCACCGATTCCCTTGT+AGG | 0.403293 | 8.1:+66497505 | None:intergenic |
| CGCTGGTTACGACAAGTTAC+AGG | 0.404370 | 8.1:-66496005 | MS.gene23185:CDS |
| AACATCCTCCGTGCCGTCGC+TGG | 0.404618 | 8.1:-66496040 | MS.gene23185:CDS |
| TGTACCAAAGGAGGTCATTT+GGG | 0.407077 | 8.1:-66497760 | MS.gene23185:CDS |
| GGTGCTAAGTCCTTGTTTAA+GGG | 0.416541 | 8.1:-66496073 | MS.gene23185:CDS |
| CTTACCCAATTGACACAGTT+AGG | 0.421944 | 8.1:-66496177 | MS.gene23185:CDS |
| CAACATTCTGAACAAGATTA+GGG | 0.422674 | 8.1:+66497804 | None:intergenic |
| GAAAGTCGCCATGGTTGATC+AGG | 0.424580 | 8.1:-66497834 | MS.gene23185:CDS |
| TTGCTAGCTTTGGTCTTGGA+TGG | 0.425017 | 8.1:-66496228 | MS.gene23185:CDS |
| TGGCTCATCACCAATGGTGC+AGG | 0.431380 | 8.1:-66496208 | MS.gene23185:CDS |
| TTCTCCTAACTGTGTCAATT+GGG | 0.432018 | 8.1:+66496173 | None:intergenic |
| GAAATGGTTTGCTGGAAACT+TGG | 0.433799 | 8.1:-66497047 | MS.gene23185:CDS |
| CAAGGGAGTAGACAAAGAAA+AGG | 0.433806 | 8.1:+66496996 | None:intergenic |
| AACTCCCAAATGACCTCCTT+TGG | 0.434011 | 8.1:+66497756 | None:intergenic |
| AAAAGCTTAATTCGTTCAAT+GGG | 0.436520 | 8.1:+66497575 | None:intergenic |
| AAGTCCTTGTTTAAGGGAGC+TGG | 0.439974 | 8.1:-66496067 | MS.gene23185:CDS |
| CTTTGCATCATTTGCTAGAC+GGG | 0.443087 | 8.1:+66496961 | None:intergenic |
| GGTTACTGGAAATGGTTTGC+TGG | 0.444417 | 8.1:-66497055 | MS.gene23185:CDS |
| ATCATTGGATACTGAAATGC+AGG | 0.450957 | 8.1:+66497725 | None:intergenic |
| AGAAGAATGATGATGACATC+TGG | 0.454405 | 8.1:-66496154 | MS.gene23185:CDS |
| AGAGATCCAGTAAGGAGAAC+TGG | 0.459442 | 8.1:+66496770 | None:intergenic |
| AAGCGAACAACGGCCGATGA+AGG | 0.465896 | 8.1:-66497479 | MS.gene23185:CDS |
| TCTCCTTACTGGATCTCTGC+AGG | 0.476142 | 8.1:-66496765 | MS.gene23185:intron |
| AGATGCTAGCCCTGCACCAT+TGG | 0.477482 | 8.1:+66496198 | None:intergenic |
| GTTGCAGCTCCCGCTGAGAA+AGG | 0.477911 | 8.1:-66497662 | MS.gene23185:CDS |
| CGGGAGCTGCAACAAAGATA+GGG | 0.484005 | 8.1:+66497672 | None:intergenic |
| TTGCGGTGTTACCTCTCCAT+AGG | 0.487772 | 8.1:+66497447 | None:intergenic |
| GTGTATCGTGGTCTCTACTT+TGG | 0.490767 | 8.1:-66496812 | MS.gene23185:CDS |
| CAGCTTTAATCATCTCATCC+TGG | 0.491287 | 8.1:+66497543 | None:intergenic |
| TTTGCTGGAAACTTGGCCTC+AGG | 0.497193 | 8.1:-66497040 | MS.gene23185:CDS |
| AGTAAGGAGAACTGGCTTCA+AGG | 0.497841 | 8.1:+66496778 | None:intergenic |
| GTTGTTGACTTTCTCATGGG+TGG | 0.497881 | 8.1:-66497632 | MS.gene23185:CDS |
| ATAACTCAACTAACCTGAGT+AGG | 0.498897 | 8.1:+66497407 | None:intergenic |
| TTTGTTGTTGACTTTCTCAT+GGG | 0.500591 | 8.1:-66497635 | MS.gene23185:CDS |
| GATGCAAAGGCTGCAAAGAA+AGG | 0.508474 | 8.1:-66496947 | MS.gene23185:CDS |
| CATCCGTTATTTCCCTACTC+AGG | 0.512437 | 8.1:-66497420 | MS.gene23185:intron |
| GCTGGTGCTGGTGTGCTCGC+TGG | 0.514183 | 8.1:-66496022 | MS.gene23185:CDS |
| ACAAAGTTTCCTTTCTCAGC+GGG | 0.514560 | 8.1:+66497653 | None:intergenic |
| CTCGGCAAGAAGTACGGATC+CGG | 0.520238 | 8.1:-66495974 | MS.gene23185:CDS |
| CAGAATGTTGCACGCCAGAC+CGG | 0.522629 | 8.1:-66497791 | MS.gene23185:CDS |
| TAACCTGAGTAGGGAAATAA+CGG | 0.524143 | 8.1:+66497417 | None:intergenic |
| CCTTTGCATCATTTGCTAGA+CGG | 0.524216 | 8.1:+66496960 | None:intergenic |
| TCTGAGCCCTACAAGGGAAT+CGG | 0.525862 | 8.1:-66497512 | MS.gene23185:CDS |
| GCTGGAAACTTGGCCTCAGG+AGG | 0.526095 | 8.1:-66497037 | MS.gene23185:CDS |
| AGATGTTGAAACCACGGTAC+AGG | 0.527359 | 8.1:+66496852 | None:intergenic |
| GTTGTTGCAGCATTACATGC+TGG | 0.527648 | 8.1:+66497701 | None:intergenic |
| TGGATACTGAAATGCAGGGT+TGG | 0.528389 | 8.1:+66497730 | None:intergenic |
| TAGACTTTCTGAGCCCTACA+AGG | 0.529188 | 8.1:-66497519 | MS.gene23185:CDS |
| ATGAAGGTATTGTCTCCCTA+TGG | 0.529311 | 8.1:-66497463 | MS.gene23185:CDS |
| GCAGGAGGAAGACAATTTGA+TGG | 0.533866 | 8.1:-66496923 | MS.gene23185:CDS |
| ATAATGCTCGGCAAGAAGTA+CGG | 0.537875 | 8.1:-66495980 | MS.gene23185:CDS |
| TGCGGTGTTACCTCTCCATA+GGG | 0.537902 | 8.1:+66497448 | None:intergenic |
| AAGGCTGCAAAGAAAGGTGC+AGG | 0.538988 | 8.1:-66496941 | MS.gene23185:CDS |
| CAGTCACCGATTCCCTTGTA+GGG | 0.546422 | 8.1:+66497506 | None:intergenic |
| ACTTAGCACCCTCGTTCTTG+AGG | 0.547097 | 8.1:+66496086 | None:intergenic |
| TAGGGAGACAATACCTTCAT+CGG | 0.549059 | 8.1:+66497466 | None:intergenic |
| GGTTTCAACATCTCTTGTGT+CGG | 0.553553 | 8.1:-66496842 | MS.gene23185:CDS |
| AAGGGAGTAGACAAAGAAAA+GGG | 0.554552 | 8.1:+66496997 | None:intergenic |
| TCGTTCAATGGGAGCTGCAG+CGG | 0.558742 | 8.1:+66497586 | None:intergenic |
| TAACTCAACTAACCTGAGTA+GGG | 0.561724 | 8.1:+66497408 | None:intergenic |
| GAAATAACGGATGACATTTG+CGG | 0.563798 | 8.1:+66497430 | None:intergenic |
| CAGGATGAGATGATTAAAGC+TGG | 0.564426 | 8.1:-66497542 | MS.gene23185:CDS |
| AACAAAGTTTCCTTTCTCAG+CGG | 0.567621 | 8.1:+66497652 | None:intergenic |
| CACCAGCACCAGCGACGGCA+CGG | 0.568903 | 8.1:+66496032 | None:intergenic |
| GAGCACACCAGCACCAGCGA+CGG | 0.570287 | 8.1:+66496027 | None:intergenic |
| GACGGGTACGAGCATAGTCA+AGG | 0.572808 | 8.1:+66496978 | None:intergenic |
| CTTGGATGGCTCATCACCAA+TGG | 0.573594 | 8.1:-66496214 | MS.gene23185:CDS |
| GGTACATAGAAAGACCGGTC+TGG | 0.575870 | 8.1:+66497777 | None:intergenic |
| AAGTTACAGGTCATAATGCT+CGG | 0.582137 | 8.1:-66495992 | MS.gene23185:CDS |
| GATTTGTTGGAATGCATCGA+AGG | 0.585302 | 8.1:+66496108 | None:intergenic |
| CATTCAAGGACTACTTCAAG+AGG | 0.587339 | 8.1:-66497105 | MS.gene23185:CDS |
| CCGGTCTTTCTATGTACCAA+AGG | 0.601233 | 8.1:-66497772 | MS.gene23185:CDS |
| CCGTCTAGCAAATGATGCAA+AGG | 0.603443 | 8.1:-66496960 | MS.gene23185:CDS |
| GGCTCATCACCAATGGTGCA+GGG | 0.604403 | 8.1:-66496207 | MS.gene23185:CDS |
| GAACCTGCAGAGATCCAGTA+AGG | 0.606430 | 8.1:+66496762 | None:intergenic |
| GGCAAGAAGTACGGATCCGG+TGG | 0.611623 | 8.1:-66495971 | MS.gene23185:CDS |
| AAGAAGACACTGGCAACTGA+TGG | 0.618722 | 8.1:-66496884 | MS.gene23185:CDS |
| AATTTCAAGAAGGACAAGGA+TGG | 0.620049 | 8.1:-66497076 | MS.gene23185:CDS |
| AGCACCAGCAGCACCTCCTG+AGG | 0.623751 | 8.1:+66497024 | None:intergenic |
| TTTCAATTTCAAGAAGGACA+AGG | 0.627092 | 8.1:-66497080 | MS.gene23185:CDS |
| CCTTTGGTACATAGAAAGAC+CGG | 0.627821 | 8.1:+66497772 | None:intergenic |
| ATTGTTCAGGAAAGTCGCCA+TGG | 0.629939 | 8.1:-66497843 | None:intergenic |
| CACAAGAGATGTTGAAACCA+CGG | 0.637635 | 8.1:+66496846 | None:intergenic |
| GGGAGCTGCAACAAAGATAG+GGG | 0.642711 | 8.1:+66497673 | None:intergenic |
| CCAACAAATCCTCAAGAACG+AGG | 0.645399 | 8.1:-66496095 | MS.gene23185:CDS |
| GCTGCAAAGAAAGGTGCAGG+AGG | 0.645640 | 8.1:-66496938 | MS.gene23185:CDS |
| GGTATTGCTGGCCTGTACCG+TGG | 0.650837 | 8.1:-66496863 | MS.gene23185:CDS |
| AGACTTTCTGAGCCCTACAA+GGG | 0.654879 | 8.1:-66497518 | MS.gene23185:CDS |
| AGCACCAGCTCCCTTAAACA+AGG | 0.655144 | 8.1:+66496063 | None:intergenic |
| GTCGGAATCATTGTGTATCG+TGG | 0.657764 | 8.1:-66496824 | MS.gene23185:CDS |
| GGTATTGTCTCCCTATGGAG+AGG | 0.663367 | 8.1:-66497458 | MS.gene23185:CDS |
| ACGGGTACGAGCATAGTCAA+GGG | 0.668625 | 8.1:+66496979 | None:intergenic |
| GCGCTGAACCTGATCAACCA+TGG | 0.672127 | 8.1:+66497826 | None:intergenic |
| GTCTTTCTATGTACCAAAGG+AGG | 0.674751 | 8.1:-66497769 | MS.gene23185:CDS |
| CAACAAATCCTCAAGAACGA+GGG | 0.686427 | 8.1:-66496094 | MS.gene23185:CDS |
| CAGCACCAGCGACGGCACGG+AGG | 0.687741 | 8.1:+66496035 | None:intergenic |
| TGATGTCTACAAGAAGACAC+TGG | 0.694165 | 8.1:-66496894 | MS.gene23185:CDS |
| TCATTGGATACTGAAATGCA+GGG | 0.721142 | 8.1:+66497726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACTAAAAAATCAAAA+GGG | + | chr8.1:66496426-66496445 | None:intergenic | 15.0% |
| !! | GAAAGAACTAAAAAATCAAA+AGG | + | chr8.1:66496427-66496446 | None:intergenic | 20.0% |
| !! | TATAGAAATAGCTTATTCAT+AGG | - | chr8.1:66497366-66497385 | MS.gene23185:intron | 20.0% |
| !!! | TTTTTAGTTCTTTCAAATAG+AGG | - | chr8.1:66496433-66496452 | MS.gene23185:intron | 20.0% |
| ! | AAAAGCTTAATTCGTTCAAT+GGG | + | chr8.1:66496226-66496245 | None:intergenic | 25.0% |
| ! | ATAAAATGACACAAGAGATA+AGG | + | chr8.1:66497067-66497086 | None:intergenic | 25.0% |
| ! | TTTGTGATTCAAATTCTTCT+AGG | - | chr8.1:66496658-66496677 | MS.gene23185:intron | 25.0% |
| !!! | ATTCTAGTTCATATCAGTAT+TGG | - | chr8.1:66497132-66497151 | MS.gene23185:intron | 25.0% |
| !!! | CAACTTTTCTTGCTTTATTT+TGG | + | chr8.1:66497459-66497478 | None:intergenic | 25.0% |
| !!! | TCTTGCTTTATTTTGGTTTA+TGG | + | chr8.1:66497452-66497471 | None:intergenic | 25.0% |
| CAAAAGCTTAATTCGTTCAA+TGG | + | chr8.1:66496227-66496246 | None:intergenic | 30.0% | |
| CAACATTCTGAACAAGATTA+GGG | + | chr8.1:66495997-66496016 | None:intergenic | 30.0% | |
| CAAGCTTATAGACATGTTAT+CGG | + | chr8.1:66497249-66497268 | None:intergenic | 30.0% | |
| GAATACATATCAGCAAAGTT+AGG | + | chr8.1:66497116-66497135 | None:intergenic | 30.0% | |
| GTTAGTCGAACTAAAGAATT+TGG | + | chr8.1:66497094-66497113 | None:intergenic | 30.0% | |
| TTTCAATTTCAAGAAGGACA+AGG | - | chr8.1:66496718-66496737 | MS.gene23185:intron | 30.0% | |
| !! | ATCAGTATTGGTGTTATTGA+AGG | - | chr8.1:66497144-66497163 | MS.gene23185:intron | 30.0% |
| !! | CTTGTTTTCACAAAGAATCA+TGG | + | chr8.1:66497302-66497321 | None:intergenic | 30.0% |
| !! | TATGAAGTGTTGTCAAATAG+TGG | - | chr8.1:66496516-66496535 | MS.gene23185:intron | 30.0% |
| !! | TTTGTTGTTGACTTTCTCAT+GGG | - | chr8.1:66496163-66496182 | MS.gene23185:CDS | 30.0% |
| AAAAGTTTGAACTCAGACTC+GGG | + | chr8.1:66497497-66497516 | None:intergenic | 35.0% | |
| AAAGAATCATGGAGAGCTTA+TGG | + | chr8.1:66497291-66497310 | None:intergenic | 35.0% | |
| AACAAAGTTTCCTTTCTCAG+CGG | + | chr8.1:66496149-66496168 | None:intergenic | 35.0% | |
| AAGGGAGTAGACAAAGAAAA+GGG | + | chr8.1:66496804-66496823 | None:intergenic | 35.0% | |
| AAGTTACAGGTCATAATGCT+CGG | - | chr8.1:66497806-66497825 | MS.gene23185:CDS | 35.0% | |
| AATTTCAAGAAGGACAAGGA+TGG | - | chr8.1:66496722-66496741 | MS.gene23185:intron | 35.0% | |
| ATAACTCAACTAACCTGAGT+AGG | + | chr8.1:66496394-66496413 | None:intergenic | 35.0% | |
| ATCATTGGATACTGAAATGC+AGG | + | chr8.1:66496076-66496095 | None:intergenic | 35.0% | |
| CAAAAGTTTGAACTCAGACT+CGG | + | chr8.1:66497498-66497517 | None:intergenic | 35.0% | |
| CGATCTACAATTGACAACAA+TGG | - | chr8.1:66496581-66496600 | MS.gene23185:intron | 35.0% | |
| GCAACATTCTGAACAAGATT+AGG | + | chr8.1:66495998-66496017 | None:intergenic | 35.0% | |
| TAACCTGAGTAGGGAAATAA+CGG | + | chr8.1:66496384-66496403 | None:intergenic | 35.0% | |
| TAACTCAACTAACCTGAGTA+GGG | + | chr8.1:66496393-66496412 | None:intergenic | 35.0% | |
| TATTGTCTCTTGATCATTGC+AGG | - | chr8.1:66497538-66497557 | MS.gene23185:CDS | 35.0% | |
| TCATTGGATACTGAAATGCA+GGG | + | chr8.1:66496075-66496094 | None:intergenic | 35.0% | |
| TTCAGCTGTTTATCCAAACA+TGG | - | chr8.1:66497426-66497445 | MS.gene23185:CDS | 35.0% | |
| TTCTCCTAACTGTGTCAATT+GGG | + | chr8.1:66497628-66497647 | None:intergenic | 35.0% | |
| ! | AAGCACTTGTGAGACTATTT+TGG | - | chr8.1:66497206-66497225 | MS.gene23185:intron | 35.0% |
| ! | AGAAGAATGATGATGACATC+TGG | - | chr8.1:66497644-66497663 | MS.gene23185:CDS | 35.0% |
| ! | GAGGCTTTTCAATTTCAAGA+AGG | - | chr8.1:66496712-66496731 | MS.gene23185:intron | 35.0% |
| ! | GATAGTTTCTTTGCTAGCTT+TGG | - | chr8.1:66497560-66497579 | MS.gene23185:CDS | 35.0% |
| ! | TAAGCTTTTGATCCAAAACC+AGG | - | chr8.1:66496237-66496256 | MS.gene23185:CDS | 35.0% |
| ! | TAATCATCTCATCCTGGTTT+TGG | + | chr8.1:66496252-66496271 | None:intergenic | 35.0% |
| ! | TGTCTCTTCACAACTCTTTT+TGG | - | chr8.1:66496614-66496633 | MS.gene23185:intron | 35.0% |
| !! | CTTTGTTGTTGACTTTCTCA+TGG | - | chr8.1:66496162-66496181 | MS.gene23185:CDS | 35.0% |
| !! | GAAATAACGGATGACATTTG+CGG | + | chr8.1:66496371-66496390 | None:intergenic | 35.0% |
| !! | TGACTGTTTTAAGCGAACAA+CGG | - | chr8.1:66496309-66496328 | MS.gene23185:intron | 35.0% |
| !!! | TTTTGGTTTATGGCCATGTT+TGG | + | chr8.1:66497442-66497461 | None:intergenic | 35.0% |
| ACAAAGTTTCCTTTCTCAGC+GGG | + | chr8.1:66496148-66496167 | None:intergenic | 40.0% | |
| ACAAGGATGGTTACTGGAAA+TGG | - | chr8.1:66496735-66496754 | MS.gene23185:intron | 40.0% | |
| ATAATGCTCGGCAAGAAGTA+CGG | - | chr8.1:66497818-66497837 | MS.gene23185:CDS | 40.0% | |
| ATCATGGAGAGCTTATGGAA+TGG | + | chr8.1:66497286-66497305 | None:intergenic | 40.0% | |
| ATGTACCAAAGGAGGTCATT+TGG | - | chr8.1:66496037-66496056 | MS.gene23185:CDS | 40.0% | |
| CAACAAATCCTCAAGAACGA+GGG | - | chr8.1:66497704-66497723 | MS.gene23185:CDS | 40.0% | |
| CAAGGGAGTAGACAAAGAAA+AGG | + | chr8.1:66496805-66496824 | None:intergenic | 40.0% | |
| CACAAGAGATGTTGAAACCA+CGG | + | chr8.1:66496955-66496974 | None:intergenic | 40.0% | |
| CAGGATGAGATGATTAAAGC+TGG | - | chr8.1:66496256-66496275 | MS.gene23185:intron | 40.0% | |
| CATTCAAGGACTACTTCAAG+AGG | - | chr8.1:66496693-66496712 | MS.gene23185:intron | 40.0% | |
| CCTTTGGTACATAGAAAGAC+CGG | + | chr8.1:66496029-66496048 | None:intergenic | 40.0% | |
| CTTACCCAATTGACACAGTT+AGG | - | chr8.1:66497621-66497640 | MS.gene23185:CDS | 40.0% | |
| CTTCTCCTAACTGTGTCAAT+TGG | + | chr8.1:66497629-66497648 | None:intergenic | 40.0% | |
| GGTTTCAACATCTCTTGTGT+CGG | - | chr8.1:66496956-66496975 | MS.gene23185:CDS | 40.0% | |
| GTCTTTCTATGTACCAAAGG+AGG | - | chr8.1:66496029-66496048 | MS.gene23185:CDS | 40.0% | |
| TAGGGAGACAATACCTTCAT+CGG | + | chr8.1:66496335-66496354 | None:intergenic | 40.0% | |
| TGATGTCTACAAGAAGACAC+TGG | - | chr8.1:66496904-66496923 | MS.gene23185:CDS | 40.0% | |
| TGTACCAAAGGAGGTCATTT+GGG | - | chr8.1:66496038-66496057 | MS.gene23185:CDS | 40.0% | |
| ! | CAGCTTTAATCATCTCATCC+TGG | + | chr8.1:66496258-66496277 | None:intergenic | 40.0% |
| ! | CCTTTGCATCATTTGCTAGA+CGG | + | chr8.1:66496841-66496860 | None:intergenic | 40.0% |
| ! | CTTTGCATCATTTGCTAGAC+GGG | + | chr8.1:66496840-66496859 | None:intergenic | 40.0% |
| ! | GGTGCTAAGTCCTTGTTTAA+GGG | - | chr8.1:66497725-66497744 | MS.gene23185:CDS | 40.0% |
| !! | ATGAAGGTATTGTCTCCCTA+TGG | - | chr8.1:66496335-66496354 | MS.gene23185:intron | 40.0% |
| !! | GAAATGGTTTGCTGGAAACT+TGG | - | chr8.1:66496751-66496770 | MS.gene23185:intron | 40.0% |
| !! | GAAGTGTTGTCAAATAGTGG+CGG | - | chr8.1:66496519-66496538 | MS.gene23185:intron | 40.0% |
| !! | GATTTGTTGGAATGCATCGA+AGG | + | chr8.1:66497693-66497712 | None:intergenic | 40.0% |
| !! | GGCTTTGAACTTTGCATTCA+AGG | - | chr8.1:66496679-66496698 | MS.gene23185:intron | 40.0% |
| !! | TTCTTTGCTAGCTTTGGTCT+TGG | - | chr8.1:66497566-66497585 | MS.gene23185:CDS | 40.0% |
| AACTCCCAAATGACCTCCTT+TGG | + | chr8.1:66496045-66496064 | None:intergenic | 45.0% | |
| AAGAAGACACTGGCAACTGA+TGG | - | chr8.1:66496914-66496933 | MS.gene23185:CDS | 45.0% | |
| AGAAGGACAAGGATGGTTAC+TGG | - | chr8.1:66496729-66496748 | MS.gene23185:intron | 45.0% | |
| AGACTTTCTGAGCCCTACAA+GGG | - | chr8.1:66496280-66496299 | MS.gene23185:intron | 45.0% | |
| AGAGATCCAGTAAGGAGAAC+TGG | + | chr8.1:66497031-66497050 | None:intergenic | 45.0% | |
| AGATGTTGAAACCACGGTAC+AGG | + | chr8.1:66496949-66496968 | None:intergenic | 45.0% | |
| CCAACAAATCCTCAAGAACG+AGG | - | chr8.1:66497703-66497722 | MS.gene23185:CDS | 45.0% | |
| CCGGTCTTTCTATGTACCAA+AGG | - | chr8.1:66496026-66496045 | MS.gene23185:CDS | 45.0% | |
| CCGTCTAGCAAATGATGCAA+AGG | - | chr8.1:66496838-66496857 | MS.gene23185:CDS | 45.0% | |
| CCTCGTTCTTGAGGATTTGT+TGG | + | chr8.1:66497706-66497725 | None:intergenic | 45.0% | |
| GATGCAAAGGCTGCAAAGAA+AGG | - | chr8.1:66496851-66496870 | MS.gene23185:CDS | 45.0% | |
| GCAGGAGGAAGACAATTTGA+TGG | - | chr8.1:66496875-66496894 | MS.gene23185:CDS | 45.0% | |
| GCATTACATGCTGGCATCAT+TGG | + | chr8.1:66496091-66496110 | None:intergenic | 45.0% | |
| GTCGGAATCATTGTGTATCG+TGG | - | chr8.1:66496974-66496993 | MS.gene23185:CDS | 45.0% | |
| GTGTATCGTGGTCTCTACTT+TGG | - | chr8.1:66496986-66497005 | MS.gene23185:CDS | 45.0% | |
| GTTGTTGCAGCATTACATGC+TGG | + | chr8.1:66496100-66496119 | None:intergenic | 45.0% | |
| TAGACTTTCTGAGCCCTACA+AGG | - | chr8.1:66496279-66496298 | MS.gene23185:intron | 45.0% | |
| TGGATACTGAAATGCAGGGT+TGG | + | chr8.1:66496071-66496090 | None:intergenic | 45.0% | |
| TTGAAGCCAGTTCTCCTTAC+TGG | - | chr8.1:66497022-66497041 | MS.gene23185:CDS | 45.0% | |
| ! | AAGTCCTTGTTTAAGGGAGC+TGG | - | chr8.1:66497731-66497750 | MS.gene23185:CDS | 45.0% |
| ! | AGTAAGGAGAACTGGCTTCA+AGG | + | chr8.1:66497023-66497042 | None:intergenic | 45.0% |
| ! | CATCCGTTATTTCCCTACTC+AGG | - | chr8.1:66496378-66496397 | MS.gene23185:intron | 45.0% |
| ! | GGGTGCTAAGTCCTTGTTTA+AGG | - | chr8.1:66497724-66497743 | MS.gene23185:CDS | 45.0% |
| ! | GGTTACTGGAAATGGTTTGC+TGG | - | chr8.1:66496743-66496762 | MS.gene23185:intron | 45.0% |
| !! | GTTGTTGACTTTCTCATGGG+TGG | - | chr8.1:66496166-66496185 | MS.gene23185:CDS | 45.0% |
| !! | TTGCTAGCTTTGGTCTTGGA+TGG | - | chr8.1:66497570-66497589 | MS.gene23185:CDS | 45.0% |
| ACGGGTACGAGCATAGTCAA+GGG | + | chr8.1:66496822-66496841 | None:intergenic | 50.0% | |
| ACTTAGCACCCTCGTTCTTG+AGG | + | chr8.1:66497715-66497734 | None:intergenic | 50.0% | |
| AGCACCAGCTCCCTTAAACA+AGG | + | chr8.1:66497738-66497757 | None:intergenic | 50.0% | |
| CGGGAGCTGCAACAAAGATA+GGG | + | chr8.1:66496129-66496148 | None:intergenic | 50.0% | |
| CTGGCAACTGATGGTATTGC+TGG | - | chr8.1:66496923-66496942 | MS.gene23185:CDS | 50.0% | |
| CTTGGATGGCTCATCACCAA+TGG | - | chr8.1:66497584-66497603 | MS.gene23185:CDS | 50.0% | |
| GAAAGTCGCCATGGTTGATC+AGG | - | chr8.1:66495964-66495983 | MS.gene23185:CDS | 50.0% | |
| GAACCTGCAGAGATCCAGTA+AGG | + | chr8.1:66497039-66497058 | None:intergenic | 50.0% | |
| GGGAGCTGCAACAAAGATAG+GGG | + | chr8.1:66496128-66496147 | None:intergenic | 50.0% | |
| GGTACATAGAAAGACCGGTC+TGG | + | chr8.1:66496024-66496043 | None:intergenic | 50.0% | |
| GGTATTGTCTCCCTATGGAG+AGG | - | chr8.1:66496340-66496359 | MS.gene23185:intron | 50.0% | |
| TCTCCTTACTGGATCTCTGC+AGG | - | chr8.1:66497033-66497052 | MS.gene23185:CDS | 50.0% | |
| TCTGAGCCCTACAAGGGAAT+CGG | - | chr8.1:66496286-66496305 | MS.gene23185:intron | 50.0% | |
| TGTCAAATAGTGGCGGCACT+GGG | - | chr8.1:66496526-66496545 | MS.gene23185:intron | 50.0% | |
| TTGTCAAATAGTGGCGGCAC+TGG | - | chr8.1:66496525-66496544 | MS.gene23185:intron | 50.0% | |
| TTTGCTGGAAACTTGGCCTC+AGG | - | chr8.1:66496758-66496777 | MS.gene23185:intron | 50.0% | |
| ! | AAGGCTGCAAAGAAAGGTGC+AGG | - | chr8.1:66496857-66496876 | MS.gene23185:CDS | 50.0% |
| ! | CGCTGGTTACGACAAGTTAC+AGG | - | chr8.1:66497793-66497812 | MS.gene23185:CDS | 50.0% |
| !! | ACAGTCACCGATTCCCTTGT+AGG | + | chr8.1:66496296-66496315 | None:intergenic | 50.0% |
| !! | CAGTCACCGATTCCCTTGTA+GGG | + | chr8.1:66496295-66496314 | None:intergenic | 50.0% |
| !! | TGCGGTGTTACCTCTCCATA+GGG | + | chr8.1:66496353-66496372 | None:intergenic | 50.0% |
| !! | TTGCGGTGTTACCTCTCCAT+AGG | + | chr8.1:66496354-66496373 | None:intergenic | 50.0% |
| AAGCGAACAACGGCCGATGA+AGG | - | chr8.1:66496319-66496338 | MS.gene23185:intron | 55.0% | |
| AGATGCTAGCCCTGCACCAT+TGG | + | chr8.1:66497603-66497622 | None:intergenic | 55.0% | |
| CAGAATGTTGCACGCCAGAC+CGG | - | chr8.1:66496007-66496026 | MS.gene23185:CDS | 55.0% | |
| GACGGGTACGAGCATAGTCA+AGG | + | chr8.1:66496823-66496842 | None:intergenic | 55.0% | |
| GCGCTGAACCTGATCAACCA+TGG | + | chr8.1:66495975-66495994 | None:intergenic | 55.0% | |
| GCGGGAGCTGCAACAAAGAT+AGG | + | chr8.1:66496130-66496149 | None:intergenic | 55.0% | |
| GGCTCATCACCAATGGTGCA+GGG | - | chr8.1:66497591-66497610 | MS.gene23185:CDS | 55.0% | |
| TCGTTCAATGGGAGCTGCAG+CGG | + | chr8.1:66496215-66496234 | None:intergenic | 55.0% | |
| TGGCTCATCACCAATGGTGC+AGG | - | chr8.1:66497590-66497609 | MS.gene23185:CDS | 55.0% | |
| ! | CTCGGCAAGAAGTACGGATC+CGG | - | chr8.1:66497824-66497843 | MS.gene23185:CDS | 55.0% |
| ! | GCTGCAAAGAAAGGTGCAGG+AGG | - | chr8.1:66496860-66496879 | MS.gene23185:CDS | 55.0% |
| GCTGGAAACTTGGCCTCAGG+AGG | - | chr8.1:66496761-66496780 | MS.gene23185:intron | 60.0% | |
| GTTGCAGCTCCCGCTGAGAA+AGG | - | chr8.1:66496136-66496155 | MS.gene23185:CDS | 60.0% | |
| ! | GGCAAGAAGTACGGATCCGG+TGG | - | chr8.1:66497827-66497846 | MS.gene23185:CDS | 60.0% |
| ! | GGTATTGCTGGCCTGTACCG+TGG | - | chr8.1:66496935-66496954 | MS.gene23185:CDS | 60.0% |
| AACATCCTCCGTGCCGTCGC+TGG | - | chr8.1:66497758-66497777 | MS.gene23185:CDS | 65.0% | |
| AGCACCAGCAGCACCTCCTG+AGG | + | chr8.1:66496777-66496796 | None:intergenic | 65.0% | |
| GAGCACACCAGCACCAGCGA+CGG | + | chr8.1:66497774-66497793 | None:intergenic | 65.0% | |
| !! | TTGGCCTCAGGAGGTGCTGC+TGG | - | chr8.1:66496770-66496789 | MS.gene23185:CDS | 65.0% |
| CACCAGCACCAGCGACGGCA+CGG | + | chr8.1:66497769-66497788 | None:intergenic | 70.0% | |
| !! | GCTGGTGCTGGTGTGCTCGC+TGG | - | chr8.1:66497776-66497795 | MS.gene23185:CDS | 70.0% |
| CAGCACCAGCGACGGCACGG+AGG | + | chr8.1:66497766-66497785 | None:intergenic | 75.0% | |
| CTCCGTGCCGTCGCTGGTGC+TGG | - | chr8.1:66497764-66497783 | MS.gene23185:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 66495964 | 66497856 | 66495964 | ID=MS.gene23185 |
| chr8.1 | mRNA | 66495964 | 66497856 | 66495964 | ID=MS.gene23185.t1;Parent=MS.gene23185 |
| chr8.1 | exon | 66497421 | 66497856 | 66497421 | ID=MS.gene23185.t1.exon1;Parent=MS.gene23185.t1 |
| chr8.1 | CDS | 66497421 | 66497856 | 66497421 | ID=cds.MS.gene23185.t1;Parent=MS.gene23185.t1 |
| chr8.1 | exon | 66496766 | 66497140 | 66496766 | ID=MS.gene23185.t1.exon2;Parent=MS.gene23185.t1 |
| chr8.1 | CDS | 66496766 | 66497140 | 66496766 | ID=cds.MS.gene23185.t1;Parent=MS.gene23185.t1 |
| chr8.1 | exon | 66495964 | 66496260 | 66495964 | ID=MS.gene23185.t1.exon3;Parent=MS.gene23185.t1 |
| chr8.1 | CDS | 66495964 | 66496260 | 66495964 | ID=cds.MS.gene23185.t1;Parent=MS.gene23185.t1 |
| Gene Sequence |
| Protein sequence |
