Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23404.t1 | AET02191.1 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.80E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23404.t1 | P40941 | 74.8 | 385 | 77 | 3 | 4 | 368 | 1 | 385 | 1.9e-158 | 560.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23404.t1 | G7LDP4 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.3e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049400 | MS.gene23404 | 0.828307 | 9.67E-55 | -1.69E-46 |
| MS.gene049757 | MS.gene23404 | -0.824124 | 9.56E-54 | -1.69E-46 |
| MS.gene050133 | MS.gene23404 | 0.881243 | 2.82E-70 | -1.69E-46 |
| MS.gene050315 | MS.gene23404 | -0.806021 | 1.01E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene23404 | 0.821316 | 4.31E-53 | -1.69E-46 |
| MS.gene050553 | MS.gene23404 | -0.816168 | 6.35E-52 | -1.69E-46 |
| MS.gene050874 | MS.gene23404 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene23404 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene051552 | MS.gene23404 | 0.829829 | 4.13E-55 | -1.69E-46 |
| MS.gene052100 | MS.gene23404 | -0.800424 | 1.45E-48 | -1.69E-46 |
| MS.gene052469 | MS.gene23404 | -0.820226 | 7.67E-53 | -1.69E-46 |
| MS.gene052540 | MS.gene23404 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene054107 | MS.gene23404 | -0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene055159 | MS.gene23404 | 0.804868 | 1.76E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene23404 | -0.812872 | 3.41E-51 | -1.69E-46 |
| MS.gene057081 | MS.gene23404 | 0.830869 | 2.30E-55 | -1.69E-46 |
| MS.gene057494 | MS.gene23404 | 0.82201 | 2.98E-53 | -1.69E-46 |
| MS.gene058235 | MS.gene23404 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene23404 | 0.828482 | 8.77E-55 | -1.69E-46 |
| MS.gene059717 | MS.gene23404 | -0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene059868 | MS.gene23404 | -0.84928 | 3.58E-60 | -1.69E-46 |
| MS.gene060087 | MS.gene23404 | 0.820799 | 5.67E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGCTAAGTCCTTGTTTA+AGG | 0.144348 | 8.1:-66480791 | MS.gene23404:CDS |
| TAATCATCTCATCCTGGTTT+TGG | 0.193782 | 8.1:+66482266 | None:intergenic |
| TTGAAGCCAGTTCTCCTTAC+TGG | 0.211857 | 8.1:-66481493 | MS.gene23404:CDS |
| TTCTTTGCTAGCTTTGGTCT+TGG | 0.283922 | 8.1:-66480949 | MS.gene23404:CDS |
| GGCTTTGAACTTTGCATTCA+AGG | 0.320951 | 8.1:-66481836 | MS.gene23404:CDS |
| GCGGGAGCTGCAACAAAGAT+AGG | 0.324862 | 8.1:+66482388 | None:intergenic |
| CTTCTCCTAACTGTGTCAAT+TGG | 0.336850 | 8.1:+66480889 | None:intergenic |
| CCTCGTTCTTGAGGATTTGT+TGG | 0.337740 | 8.1:+66480812 | None:intergenic |
| GATAGTTTCTTTGCTAGCTT+TGG | 0.347055 | 8.1:-66480955 | MS.gene23404:CDS |
| GCATTACATGCTGGCATCAT+TGG | 0.360534 | 8.1:+66482427 | None:intergenic |
| GCAACATTCTGAACAAGATT+AGG | 0.362542 | 8.1:+66482520 | None:intergenic |
| ACAAGGATGGTTACTGGAAA+TGG | 0.366913 | 8.1:-66481780 | MS.gene23404:CDS |
| AGAAGGACAAGGATGGTTAC+TGG | 0.382727 | 8.1:-66481786 | MS.gene23404:CDS |
| CTTTGTTGTTGACTTTCTCA+TGG | 0.384159 | 8.1:-66482353 | MS.gene23404:CDS |
| CAAAAGCTTAATTCGTTCAA+TGG | 0.387505 | 8.1:+66482291 | None:intergenic |
| CTGGCAACTGATGGTATTGC+TGG | 0.388315 | 8.1:-66481592 | MS.gene23404:CDS |
| ATGTACCAAAGGAGGTCATT+TGG | 0.389033 | 8.1:-66482478 | MS.gene23404:CDS |
| CTCCGTGCCGTCGCTGGTGC+TGG | 0.395301 | 8.1:-66480751 | MS.gene23404:CDS |
| TTGGCCTCAGGAGGTGCTGC+TGG | 0.402435 | 8.1:-66481745 | MS.gene23404:CDS |
| ACAGTCACCGATTCCCTTGT+AGG | 0.403293 | 8.1:+66482222 | None:intergenic |
| CGCTGGTTACGACAAGTTAC+AGG | 0.404370 | 8.1:-66480722 | MS.gene23404:CDS |
| AACATCCTCCGTGCCGTCGC+TGG | 0.404618 | 8.1:-66480757 | MS.gene23404:CDS |
| TGTACCAAAGGAGGTCATTT+GGG | 0.407077 | 8.1:-66482477 | MS.gene23404:CDS |
| GGTGCTAAGTCCTTGTTTAA+GGG | 0.416541 | 8.1:-66480790 | MS.gene23404:CDS |
| CTTACCCAATTGACACAGTT+AGG | 0.421944 | 8.1:-66480894 | MS.gene23404:CDS |
| CAACATTCTGAACAAGATTA+GGG | 0.422674 | 8.1:+66482521 | None:intergenic |
| GAAAGTCGCCATGGTTGATC+AGG | 0.424580 | 8.1:-66482551 | MS.gene23404:CDS |
| TTGCTAGCTTTGGTCTTGGA+TGG | 0.425017 | 8.1:-66480945 | MS.gene23404:CDS |
| TGGCTCATCACCAATGGTGC+AGG | 0.431380 | 8.1:-66480925 | MS.gene23404:CDS |
| TTCTCCTAACTGTGTCAATT+GGG | 0.432018 | 8.1:+66480890 | None:intergenic |
| GAAATGGTTTGCTGGAAACT+TGG | 0.433799 | 8.1:-66481764 | MS.gene23404:CDS |
| CAAGGGAGTAGACAAAGAAA+AGG | 0.433806 | 8.1:+66481713 | None:intergenic |
| AACTCCCAAATGACCTCCTT+TGG | 0.434011 | 8.1:+66482473 | None:intergenic |
| AAAAGCTTAATTCGTTCAAT+GGG | 0.436520 | 8.1:+66482292 | None:intergenic |
| AAGTCCTTGTTTAAGGGAGC+TGG | 0.439974 | 8.1:-66480784 | MS.gene23404:CDS |
| CTTTGCATCATTTGCTAGAC+GGG | 0.443087 | 8.1:+66481678 | None:intergenic |
| GGTTACTGGAAATGGTTTGC+TGG | 0.444417 | 8.1:-66481772 | MS.gene23404:CDS |
| ATCATTGGATACTGAAATGC+AGG | 0.450957 | 8.1:+66482442 | None:intergenic |
| AGAAGAATGATGATGACATC+TGG | 0.454405 | 8.1:-66480871 | MS.gene23404:CDS |
| AGAGATCCAGTAAGGAGAAC+TGG | 0.459442 | 8.1:+66481487 | None:intergenic |
| AAGCGAACAACGGCCGATGA+AGG | 0.465896 | 8.1:-66482196 | MS.gene23404:CDS |
| TCTCCTTACTGGATCTCTGC+AGG | 0.476142 | 8.1:-66481482 | MS.gene23404:intron |
| AGATGCTAGCCCTGCACCAT+TGG | 0.477482 | 8.1:+66480915 | None:intergenic |
| GTTGCAGCTCCCGCTGAGAA+AGG | 0.477911 | 8.1:-66482379 | MS.gene23404:CDS |
| CGGGAGCTGCAACAAAGATA+GGG | 0.484005 | 8.1:+66482389 | None:intergenic |
| TTGCGGTGTTACCTCTCCAT+AGG | 0.487772 | 8.1:+66482164 | None:intergenic |
| GTGTATCGTGGTCTCTACTT+TGG | 0.490767 | 8.1:-66481529 | MS.gene23404:CDS |
| CAGCTTTAATCATCTCATCC+TGG | 0.491287 | 8.1:+66482260 | None:intergenic |
| TTTGCTGGAAACTTGGCCTC+AGG | 0.497193 | 8.1:-66481757 | MS.gene23404:CDS |
| AGTAAGGAGAACTGGCTTCA+AGG | 0.497841 | 8.1:+66481495 | None:intergenic |
| GTTGTTGACTTTCTCATGGG+TGG | 0.497881 | 8.1:-66482349 | MS.gene23404:CDS |
| ATAACTCAACTAACCTGAGT+AGG | 0.498897 | 8.1:+66482124 | None:intergenic |
| TTTGTTGTTGACTTTCTCAT+GGG | 0.500591 | 8.1:-66482352 | MS.gene23404:CDS |
| GATGCAAAGGCTGCAAAGAA+AGG | 0.508474 | 8.1:-66481664 | MS.gene23404:CDS |
| CATCCGTTATTTCCCTACTC+AGG | 0.512437 | 8.1:-66482137 | MS.gene23404:intron |
| GCTGGTGCTGGTGTGCTCGC+TGG | 0.514183 | 8.1:-66480739 | MS.gene23404:CDS |
| ACAAAGTTTCCTTTCTCAGC+GGG | 0.514560 | 8.1:+66482370 | None:intergenic |
| CTCGGCAAGAAGTACGGATC+CGG | 0.520238 | 8.1:-66480691 | MS.gene23404:CDS |
| CAGAATGTTGCACGCCAGAC+CGG | 0.522629 | 8.1:-66482508 | MS.gene23404:CDS |
| TAACCTGAGTAGGGAAATAA+CGG | 0.524143 | 8.1:+66482134 | None:intergenic |
| CCTTTGCATCATTTGCTAGA+CGG | 0.524216 | 8.1:+66481677 | None:intergenic |
| TCTGAGCCCTACAAGGGAAT+CGG | 0.525862 | 8.1:-66482229 | MS.gene23404:CDS |
| GCTGGAAACTTGGCCTCAGG+AGG | 0.526095 | 8.1:-66481754 | MS.gene23404:CDS |
| AGATGTTGAAACCACGGTAC+AGG | 0.527359 | 8.1:+66481569 | None:intergenic |
| GTTGTTGCAGCATTACATGC+TGG | 0.527648 | 8.1:+66482418 | None:intergenic |
| TGGATACTGAAATGCAGGGT+TGG | 0.528389 | 8.1:+66482447 | None:intergenic |
| TAGACTTTCTGAGCCCTACA+AGG | 0.529188 | 8.1:-66482236 | MS.gene23404:CDS |
| ATGAAGGTATTGTCTCCCTA+TGG | 0.529311 | 8.1:-66482180 | MS.gene23404:CDS |
| GCAGGAGGAAGACAATTTGA+TGG | 0.533866 | 8.1:-66481640 | MS.gene23404:CDS |
| ATAATGCTCGGCAAGAAGTA+CGG | 0.537875 | 8.1:-66480697 | MS.gene23404:CDS |
| TGCGGTGTTACCTCTCCATA+GGG | 0.537902 | 8.1:+66482165 | None:intergenic |
| AAGGCTGCAAAGAAAGGTGC+AGG | 0.538988 | 8.1:-66481658 | MS.gene23404:CDS |
| CAGTCACCGATTCCCTTGTA+GGG | 0.546422 | 8.1:+66482223 | None:intergenic |
| ACTTAGCACCCTCGTTCTTG+AGG | 0.547097 | 8.1:+66480803 | None:intergenic |
| TAGGGAGACAATACCTTCAT+CGG | 0.549059 | 8.1:+66482183 | None:intergenic |
| GGTTTCAACATCTCTTGTGT+CGG | 0.553553 | 8.1:-66481559 | MS.gene23404:CDS |
| AAGGGAGTAGACAAAGAAAA+GGG | 0.554552 | 8.1:+66481714 | None:intergenic |
| TCGTTCAATGGGAGCTGCAG+CGG | 0.558742 | 8.1:+66482303 | None:intergenic |
| TAACTCAACTAACCTGAGTA+GGG | 0.561724 | 8.1:+66482125 | None:intergenic |
| GAAATAACGGATGACATTTG+CGG | 0.563798 | 8.1:+66482147 | None:intergenic |
| CAGGATGAGATGATTAAAGC+TGG | 0.564426 | 8.1:-66482259 | MS.gene23404:CDS |
| AACAAAGTTTCCTTTCTCAG+CGG | 0.567621 | 8.1:+66482369 | None:intergenic |
| CACCAGCACCAGCGACGGCA+CGG | 0.568903 | 8.1:+66480749 | None:intergenic |
| GAGCACACCAGCACCAGCGA+CGG | 0.570287 | 8.1:+66480744 | None:intergenic |
| GACGGGTACGAGCATAGTCA+AGG | 0.572808 | 8.1:+66481695 | None:intergenic |
| CTTGGATGGCTCATCACCAA+TGG | 0.573594 | 8.1:-66480931 | MS.gene23404:CDS |
| GGTACATAGAAAGACCGGTC+TGG | 0.575870 | 8.1:+66482494 | None:intergenic |
| AAGTTACAGGTCATAATGCT+CGG | 0.582137 | 8.1:-66480709 | MS.gene23404:CDS |
| GATTTGTTGGAATGCATCGA+AGG | 0.585302 | 8.1:+66480825 | None:intergenic |
| CATTCAAGGACTACTTCAAG+AGG | 0.587339 | 8.1:-66481822 | MS.gene23404:CDS |
| CCGGTCTTTCTATGTACCAA+AGG | 0.601233 | 8.1:-66482489 | MS.gene23404:CDS |
| CCGTCTAGCAAATGATGCAA+AGG | 0.603443 | 8.1:-66481677 | MS.gene23404:CDS |
| GGCTCATCACCAATGGTGCA+GGG | 0.604403 | 8.1:-66480924 | MS.gene23404:CDS |
| GAACCTGCAGAGATCCAGTA+AGG | 0.606430 | 8.1:+66481479 | None:intergenic |
| GGCAAGAAGTACGGATCCGG+TGG | 0.611623 | 8.1:-66480688 | MS.gene23404:CDS |
| AAGAAGACACTGGCAACTGA+TGG | 0.618722 | 8.1:-66481601 | MS.gene23404:CDS |
| AATTTCAAGAAGGACAAGGA+TGG | 0.620049 | 8.1:-66481793 | MS.gene23404:CDS |
| AGCACCAGCAGCACCTCCTG+AGG | 0.623751 | 8.1:+66481741 | None:intergenic |
| TTTCAATTTCAAGAAGGACA+AGG | 0.627092 | 8.1:-66481797 | MS.gene23404:CDS |
| CCTTTGGTACATAGAAAGAC+CGG | 0.627821 | 8.1:+66482489 | None:intergenic |
| ATTGTTCAGGAAAGTCGCCA+TGG | 0.629939 | 8.1:-66482560 | None:intergenic |
| CACAAGAGATGTTGAAACCA+CGG | 0.637635 | 8.1:+66481563 | None:intergenic |
| GGGAGCTGCAACAAAGATAG+GGG | 0.642711 | 8.1:+66482390 | None:intergenic |
| CCAACAAATCCTCAAGAACG+AGG | 0.645399 | 8.1:-66480812 | MS.gene23404:CDS |
| GCTGCAAAGAAAGGTGCAGG+AGG | 0.645640 | 8.1:-66481655 | MS.gene23404:CDS |
| GGTATTGCTGGCCTGTACCG+TGG | 0.650837 | 8.1:-66481580 | MS.gene23404:CDS |
| AGACTTTCTGAGCCCTACAA+GGG | 0.654879 | 8.1:-66482235 | MS.gene23404:CDS |
| AGCACCAGCTCCCTTAAACA+AGG | 0.655144 | 8.1:+66480780 | None:intergenic |
| GTCGGAATCATTGTGTATCG+TGG | 0.657764 | 8.1:-66481541 | MS.gene23404:CDS |
| GGTATTGTCTCCCTATGGAG+AGG | 0.663367 | 8.1:-66482175 | MS.gene23404:CDS |
| ACGGGTACGAGCATAGTCAA+GGG | 0.668625 | 8.1:+66481696 | None:intergenic |
| GCGCTGAACCTGATCAACCA+TGG | 0.672127 | 8.1:+66482543 | None:intergenic |
| GTCTTTCTATGTACCAAAGG+AGG | 0.674751 | 8.1:-66482486 | MS.gene23404:CDS |
| CAACAAATCCTCAAGAACGA+GGG | 0.686427 | 8.1:-66480811 | MS.gene23404:CDS |
| CAGCACCAGCGACGGCACGG+AGG | 0.687741 | 8.1:+66480752 | None:intergenic |
| TGATGTCTACAAGAAGACAC+TGG | 0.694165 | 8.1:-66481611 | MS.gene23404:CDS |
| TCATTGGATACTGAAATGCA+GGG | 0.721142 | 8.1:+66482443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACTAAAAAATCAAAA+GGG | + | chr8.1:66481143-66481162 | None:intergenic | 15.0% |
| !! | GAAAGAACTAAAAAATCAAA+AGG | + | chr8.1:66481144-66481163 | None:intergenic | 20.0% |
| !! | TATAGAAATAGCTTATTCAT+AGG | - | chr8.1:66482083-66482102 | MS.gene23404:intron | 20.0% |
| !!! | TTTTTAGTTCTTTCAAATAG+AGG | - | chr8.1:66481150-66481169 | MS.gene23404:intron | 20.0% |
| ! | AAAAGCTTAATTCGTTCAAT+GGG | + | chr8.1:66480943-66480962 | None:intergenic | 25.0% |
| ! | ATAAAATGACACAAGAGATA+AGG | + | chr8.1:66481784-66481803 | None:intergenic | 25.0% |
| ! | TTTGTGATTCAAATTCTTCT+AGG | - | chr8.1:66481375-66481394 | MS.gene23404:intron | 25.0% |
| !!! | ATTCTAGTTCATATCAGTAT+TGG | - | chr8.1:66481849-66481868 | MS.gene23404:intron | 25.0% |
| !!! | CAACTTTTCTTGCTTTATTT+TGG | + | chr8.1:66482176-66482195 | None:intergenic | 25.0% |
| !!! | TCTTGCTTTATTTTGGTTTA+TGG | + | chr8.1:66482169-66482188 | None:intergenic | 25.0% |
| CAAAAGCTTAATTCGTTCAA+TGG | + | chr8.1:66480944-66480963 | None:intergenic | 30.0% | |
| CAACATTCTGAACAAGATTA+GGG | + | chr8.1:66480714-66480733 | None:intergenic | 30.0% | |
| CAAGCTTATAGACATGTTAT+CGG | + | chr8.1:66481966-66481985 | None:intergenic | 30.0% | |
| GAATACATATCAGCAAAGTT+AGG | + | chr8.1:66481833-66481852 | None:intergenic | 30.0% | |
| GTTAGTCGAACTAAAGAATT+TGG | + | chr8.1:66481811-66481830 | None:intergenic | 30.0% | |
| TTTCAATTTCAAGAAGGACA+AGG | - | chr8.1:66481435-66481454 | MS.gene23404:intron | 30.0% | |
| !! | ATCAGTATTGGTGTTATTGA+AGG | - | chr8.1:66481861-66481880 | MS.gene23404:intron | 30.0% |
| !! | CTTGTTTTCACAAAGAATCA+TGG | + | chr8.1:66482019-66482038 | None:intergenic | 30.0% |
| !! | TATGAAGTGTTGTCAAATAG+TGG | - | chr8.1:66481233-66481252 | MS.gene23404:intron | 30.0% |
| !! | TTTGTTGTTGACTTTCTCAT+GGG | - | chr8.1:66480880-66480899 | MS.gene23404:CDS | 30.0% |
| AAAAGTTTGAACTCAGACTC+GGG | + | chr8.1:66482214-66482233 | None:intergenic | 35.0% | |
| AAAGAATCATGGAGAGCTTA+TGG | + | chr8.1:66482008-66482027 | None:intergenic | 35.0% | |
| AACAAAGTTTCCTTTCTCAG+CGG | + | chr8.1:66480866-66480885 | None:intergenic | 35.0% | |
| AAGGGAGTAGACAAAGAAAA+GGG | + | chr8.1:66481521-66481540 | None:intergenic | 35.0% | |
| AAGTTACAGGTCATAATGCT+CGG | - | chr8.1:66482523-66482542 | MS.gene23404:CDS | 35.0% | |
| AATTTCAAGAAGGACAAGGA+TGG | - | chr8.1:66481439-66481458 | MS.gene23404:intron | 35.0% | |
| ATAACTCAACTAACCTGAGT+AGG | + | chr8.1:66481111-66481130 | None:intergenic | 35.0% | |
| ATCATTGGATACTGAAATGC+AGG | + | chr8.1:66480793-66480812 | None:intergenic | 35.0% | |
| CAAAAGTTTGAACTCAGACT+CGG | + | chr8.1:66482215-66482234 | None:intergenic | 35.0% | |
| CGATCTACAATTGACAACAA+TGG | - | chr8.1:66481298-66481317 | MS.gene23404:intron | 35.0% | |
| GCAACATTCTGAACAAGATT+AGG | + | chr8.1:66480715-66480734 | None:intergenic | 35.0% | |
| TAACCTGAGTAGGGAAATAA+CGG | + | chr8.1:66481101-66481120 | None:intergenic | 35.0% | |
| TAACTCAACTAACCTGAGTA+GGG | + | chr8.1:66481110-66481129 | None:intergenic | 35.0% | |
| TATTGTCTCTTGATCATTGC+AGG | - | chr8.1:66482255-66482274 | MS.gene23404:CDS | 35.0% | |
| TCATTGGATACTGAAATGCA+GGG | + | chr8.1:66480792-66480811 | None:intergenic | 35.0% | |
| TTCAGCTGTTTATCCAAACA+TGG | - | chr8.1:66482143-66482162 | MS.gene23404:CDS | 35.0% | |
| TTCTCCTAACTGTGTCAATT+GGG | + | chr8.1:66482345-66482364 | None:intergenic | 35.0% | |
| ! | AAGCACTTGTGAGACTATTT+TGG | - | chr8.1:66481923-66481942 | MS.gene23404:intron | 35.0% |
| ! | AGAAGAATGATGATGACATC+TGG | - | chr8.1:66482361-66482380 | MS.gene23404:CDS | 35.0% |
| ! | GAGGCTTTTCAATTTCAAGA+AGG | - | chr8.1:66481429-66481448 | MS.gene23404:intron | 35.0% |
| ! | GATAGTTTCTTTGCTAGCTT+TGG | - | chr8.1:66482277-66482296 | MS.gene23404:CDS | 35.0% |
| ! | TAAGCTTTTGATCCAAAACC+AGG | - | chr8.1:66480954-66480973 | MS.gene23404:CDS | 35.0% |
| ! | TAATCATCTCATCCTGGTTT+TGG | + | chr8.1:66480969-66480988 | None:intergenic | 35.0% |
| ! | TGTCTCTTCACAACTCTTTT+TGG | - | chr8.1:66481331-66481350 | MS.gene23404:intron | 35.0% |
| !! | CTTTGTTGTTGACTTTCTCA+TGG | - | chr8.1:66480879-66480898 | MS.gene23404:CDS | 35.0% |
| !! | GAAATAACGGATGACATTTG+CGG | + | chr8.1:66481088-66481107 | None:intergenic | 35.0% |
| !! | TGACTGTTTTAAGCGAACAA+CGG | - | chr8.1:66481026-66481045 | MS.gene23404:intron | 35.0% |
| !!! | TTTTGGTTTATGGCCATGTT+TGG | + | chr8.1:66482159-66482178 | None:intergenic | 35.0% |
| ACAAAGTTTCCTTTCTCAGC+GGG | + | chr8.1:66480865-66480884 | None:intergenic | 40.0% | |
| ACAAGGATGGTTACTGGAAA+TGG | - | chr8.1:66481452-66481471 | MS.gene23404:intron | 40.0% | |
| ATAATGCTCGGCAAGAAGTA+CGG | - | chr8.1:66482535-66482554 | MS.gene23404:CDS | 40.0% | |
| ATCATGGAGAGCTTATGGAA+TGG | + | chr8.1:66482003-66482022 | None:intergenic | 40.0% | |
| ATGTACCAAAGGAGGTCATT+TGG | - | chr8.1:66480754-66480773 | MS.gene23404:CDS | 40.0% | |
| CAACAAATCCTCAAGAACGA+GGG | - | chr8.1:66482421-66482440 | MS.gene23404:CDS | 40.0% | |
| CAAGGGAGTAGACAAAGAAA+AGG | + | chr8.1:66481522-66481541 | None:intergenic | 40.0% | |
| CACAAGAGATGTTGAAACCA+CGG | + | chr8.1:66481672-66481691 | None:intergenic | 40.0% | |
| CAGGATGAGATGATTAAAGC+TGG | - | chr8.1:66480973-66480992 | MS.gene23404:intron | 40.0% | |
| CATTCAAGGACTACTTCAAG+AGG | - | chr8.1:66481410-66481429 | MS.gene23404:intron | 40.0% | |
| CCTTTGGTACATAGAAAGAC+CGG | + | chr8.1:66480746-66480765 | None:intergenic | 40.0% | |
| CTTACCCAATTGACACAGTT+AGG | - | chr8.1:66482338-66482357 | MS.gene23404:CDS | 40.0% | |
| CTTCTCCTAACTGTGTCAAT+TGG | + | chr8.1:66482346-66482365 | None:intergenic | 40.0% | |
| GGTTTCAACATCTCTTGTGT+CGG | - | chr8.1:66481673-66481692 | MS.gene23404:CDS | 40.0% | |
| GTCTTTCTATGTACCAAAGG+AGG | - | chr8.1:66480746-66480765 | MS.gene23404:CDS | 40.0% | |
| TAGGGAGACAATACCTTCAT+CGG | + | chr8.1:66481052-66481071 | None:intergenic | 40.0% | |
| TGATGTCTACAAGAAGACAC+TGG | - | chr8.1:66481621-66481640 | MS.gene23404:CDS | 40.0% | |
| TGTACCAAAGGAGGTCATTT+GGG | - | chr8.1:66480755-66480774 | MS.gene23404:CDS | 40.0% | |
| ! | CAGCTTTAATCATCTCATCC+TGG | + | chr8.1:66480975-66480994 | None:intergenic | 40.0% |
| ! | CCTTTGCATCATTTGCTAGA+CGG | + | chr8.1:66481558-66481577 | None:intergenic | 40.0% |
| ! | CTTTGCATCATTTGCTAGAC+GGG | + | chr8.1:66481557-66481576 | None:intergenic | 40.0% |
| ! | GGTGCTAAGTCCTTGTTTAA+GGG | - | chr8.1:66482442-66482461 | MS.gene23404:CDS | 40.0% |
| !! | ATGAAGGTATTGTCTCCCTA+TGG | - | chr8.1:66481052-66481071 | MS.gene23404:intron | 40.0% |
| !! | GAAATGGTTTGCTGGAAACT+TGG | - | chr8.1:66481468-66481487 | MS.gene23404:intron | 40.0% |
| !! | GAAGTGTTGTCAAATAGTGG+CGG | - | chr8.1:66481236-66481255 | MS.gene23404:intron | 40.0% |
| !! | GATTTGTTGGAATGCATCGA+AGG | + | chr8.1:66482410-66482429 | None:intergenic | 40.0% |
| !! | GGCTTTGAACTTTGCATTCA+AGG | - | chr8.1:66481396-66481415 | MS.gene23404:intron | 40.0% |
| !! | TTCTTTGCTAGCTTTGGTCT+TGG | - | chr8.1:66482283-66482302 | MS.gene23404:CDS | 40.0% |
| AACTCCCAAATGACCTCCTT+TGG | + | chr8.1:66480762-66480781 | None:intergenic | 45.0% | |
| AAGAAGACACTGGCAACTGA+TGG | - | chr8.1:66481631-66481650 | MS.gene23404:CDS | 45.0% | |
| AGAAGGACAAGGATGGTTAC+TGG | - | chr8.1:66481446-66481465 | MS.gene23404:intron | 45.0% | |
| AGACTTTCTGAGCCCTACAA+GGG | - | chr8.1:66480997-66481016 | MS.gene23404:intron | 45.0% | |
| AGAGATCCAGTAAGGAGAAC+TGG | + | chr8.1:66481748-66481767 | None:intergenic | 45.0% | |
| AGATGTTGAAACCACGGTAC+AGG | + | chr8.1:66481666-66481685 | None:intergenic | 45.0% | |
| CCAACAAATCCTCAAGAACG+AGG | - | chr8.1:66482420-66482439 | MS.gene23404:CDS | 45.0% | |
| CCGGTCTTTCTATGTACCAA+AGG | - | chr8.1:66480743-66480762 | MS.gene23404:CDS | 45.0% | |
| CCGTCTAGCAAATGATGCAA+AGG | - | chr8.1:66481555-66481574 | MS.gene23404:CDS | 45.0% | |
| CCTCGTTCTTGAGGATTTGT+TGG | + | chr8.1:66482423-66482442 | None:intergenic | 45.0% | |
| GATGCAAAGGCTGCAAAGAA+AGG | - | chr8.1:66481568-66481587 | MS.gene23404:CDS | 45.0% | |
| GCAGGAGGAAGACAATTTGA+TGG | - | chr8.1:66481592-66481611 | MS.gene23404:CDS | 45.0% | |
| GCATTACATGCTGGCATCAT+TGG | + | chr8.1:66480808-66480827 | None:intergenic | 45.0% | |
| GTCGGAATCATTGTGTATCG+TGG | - | chr8.1:66481691-66481710 | MS.gene23404:CDS | 45.0% | |
| GTGTATCGTGGTCTCTACTT+TGG | - | chr8.1:66481703-66481722 | MS.gene23404:CDS | 45.0% | |
| GTTGTTGCAGCATTACATGC+TGG | + | chr8.1:66480817-66480836 | None:intergenic | 45.0% | |
| TAGACTTTCTGAGCCCTACA+AGG | - | chr8.1:66480996-66481015 | MS.gene23404:intron | 45.0% | |
| TGGATACTGAAATGCAGGGT+TGG | + | chr8.1:66480788-66480807 | None:intergenic | 45.0% | |
| TTGAAGCCAGTTCTCCTTAC+TGG | - | chr8.1:66481739-66481758 | MS.gene23404:CDS | 45.0% | |
| ! | AAGTCCTTGTTTAAGGGAGC+TGG | - | chr8.1:66482448-66482467 | MS.gene23404:CDS | 45.0% |
| ! | AGTAAGGAGAACTGGCTTCA+AGG | + | chr8.1:66481740-66481759 | None:intergenic | 45.0% |
| ! | CATCCGTTATTTCCCTACTC+AGG | - | chr8.1:66481095-66481114 | MS.gene23404:intron | 45.0% |
| ! | GGGTGCTAAGTCCTTGTTTA+AGG | - | chr8.1:66482441-66482460 | MS.gene23404:CDS | 45.0% |
| ! | GGTTACTGGAAATGGTTTGC+TGG | - | chr8.1:66481460-66481479 | MS.gene23404:intron | 45.0% |
| !! | GTTGTTGACTTTCTCATGGG+TGG | - | chr8.1:66480883-66480902 | MS.gene23404:CDS | 45.0% |
| !! | TTGCTAGCTTTGGTCTTGGA+TGG | - | chr8.1:66482287-66482306 | MS.gene23404:CDS | 45.0% |
| ACGGGTACGAGCATAGTCAA+GGG | + | chr8.1:66481539-66481558 | None:intergenic | 50.0% | |
| ACTTAGCACCCTCGTTCTTG+AGG | + | chr8.1:66482432-66482451 | None:intergenic | 50.0% | |
| AGCACCAGCTCCCTTAAACA+AGG | + | chr8.1:66482455-66482474 | None:intergenic | 50.0% | |
| CGGGAGCTGCAACAAAGATA+GGG | + | chr8.1:66480846-66480865 | None:intergenic | 50.0% | |
| CTGGCAACTGATGGTATTGC+TGG | - | chr8.1:66481640-66481659 | MS.gene23404:CDS | 50.0% | |
| CTTGGATGGCTCATCACCAA+TGG | - | chr8.1:66482301-66482320 | MS.gene23404:CDS | 50.0% | |
| GAAAGTCGCCATGGTTGATC+AGG | - | chr8.1:66480681-66480700 | MS.gene23404:CDS | 50.0% | |
| GAACCTGCAGAGATCCAGTA+AGG | + | chr8.1:66481756-66481775 | None:intergenic | 50.0% | |
| GGGAGCTGCAACAAAGATAG+GGG | + | chr8.1:66480845-66480864 | None:intergenic | 50.0% | |
| GGTACATAGAAAGACCGGTC+TGG | + | chr8.1:66480741-66480760 | None:intergenic | 50.0% | |
| GGTATTGTCTCCCTATGGAG+AGG | - | chr8.1:66481057-66481076 | MS.gene23404:intron | 50.0% | |
| TCTCCTTACTGGATCTCTGC+AGG | - | chr8.1:66481750-66481769 | MS.gene23404:CDS | 50.0% | |
| TCTGAGCCCTACAAGGGAAT+CGG | - | chr8.1:66481003-66481022 | MS.gene23404:intron | 50.0% | |
| TGTCAAATAGTGGCGGCACT+GGG | - | chr8.1:66481243-66481262 | MS.gene23404:intron | 50.0% | |
| TTGTCAAATAGTGGCGGCAC+TGG | - | chr8.1:66481242-66481261 | MS.gene23404:intron | 50.0% | |
| TTTGCTGGAAACTTGGCCTC+AGG | - | chr8.1:66481475-66481494 | MS.gene23404:intron | 50.0% | |
| ! | AAGGCTGCAAAGAAAGGTGC+AGG | - | chr8.1:66481574-66481593 | MS.gene23404:CDS | 50.0% |
| ! | CGCTGGTTACGACAAGTTAC+AGG | - | chr8.1:66482510-66482529 | MS.gene23404:CDS | 50.0% |
| !! | ACAGTCACCGATTCCCTTGT+AGG | + | chr8.1:66481013-66481032 | None:intergenic | 50.0% |
| !! | CAGTCACCGATTCCCTTGTA+GGG | + | chr8.1:66481012-66481031 | None:intergenic | 50.0% |
| !! | TGCGGTGTTACCTCTCCATA+GGG | + | chr8.1:66481070-66481089 | None:intergenic | 50.0% |
| !! | TTGCGGTGTTACCTCTCCAT+AGG | + | chr8.1:66481071-66481090 | None:intergenic | 50.0% |
| AAGCGAACAACGGCCGATGA+AGG | - | chr8.1:66481036-66481055 | MS.gene23404:intron | 55.0% | |
| AGATGCTAGCCCTGCACCAT+TGG | + | chr8.1:66482320-66482339 | None:intergenic | 55.0% | |
| CAGAATGTTGCACGCCAGAC+CGG | - | chr8.1:66480724-66480743 | MS.gene23404:CDS | 55.0% | |
| GACGGGTACGAGCATAGTCA+AGG | + | chr8.1:66481540-66481559 | None:intergenic | 55.0% | |
| GCGCTGAACCTGATCAACCA+TGG | + | chr8.1:66480692-66480711 | None:intergenic | 55.0% | |
| GCGGGAGCTGCAACAAAGAT+AGG | + | chr8.1:66480847-66480866 | None:intergenic | 55.0% | |
| GGCTCATCACCAATGGTGCA+GGG | - | chr8.1:66482308-66482327 | MS.gene23404:CDS | 55.0% | |
| TCGTTCAATGGGAGCTGCAG+CGG | + | chr8.1:66480932-66480951 | None:intergenic | 55.0% | |
| TGGCTCATCACCAATGGTGC+AGG | - | chr8.1:66482307-66482326 | MS.gene23404:CDS | 55.0% | |
| ! | CTCGGCAAGAAGTACGGATC+CGG | - | chr8.1:66482541-66482560 | MS.gene23404:CDS | 55.0% |
| ! | GCTGCAAAGAAAGGTGCAGG+AGG | - | chr8.1:66481577-66481596 | MS.gene23404:CDS | 55.0% |
| GCTGGAAACTTGGCCTCAGG+AGG | - | chr8.1:66481478-66481497 | MS.gene23404:intron | 60.0% | |
| GTTGCAGCTCCCGCTGAGAA+AGG | - | chr8.1:66480853-66480872 | MS.gene23404:CDS | 60.0% | |
| ! | GGCAAGAAGTACGGATCCGG+TGG | - | chr8.1:66482544-66482563 | MS.gene23404:CDS | 60.0% |
| ! | GGTATTGCTGGCCTGTACCG+TGG | - | chr8.1:66481652-66481671 | MS.gene23404:CDS | 60.0% |
| AACATCCTCCGTGCCGTCGC+TGG | - | chr8.1:66482475-66482494 | MS.gene23404:CDS | 65.0% | |
| AGCACCAGCAGCACCTCCTG+AGG | + | chr8.1:66481494-66481513 | None:intergenic | 65.0% | |
| GAGCACACCAGCACCAGCGA+CGG | + | chr8.1:66482491-66482510 | None:intergenic | 65.0% | |
| !! | TTGGCCTCAGGAGGTGCTGC+TGG | - | chr8.1:66481487-66481506 | MS.gene23404:CDS | 65.0% |
| CACCAGCACCAGCGACGGCA+CGG | + | chr8.1:66482486-66482505 | None:intergenic | 70.0% | |
| !! | GCTGGTGCTGGTGTGCTCGC+TGG | - | chr8.1:66482493-66482512 | MS.gene23404:CDS | 70.0% |
| CAGCACCAGCGACGGCACGG+AGG | + | chr8.1:66482483-66482502 | None:intergenic | 75.0% | |
| CTCCGTGCCGTCGCTGGTGC+TGG | - | chr8.1:66482481-66482500 | MS.gene23404:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 66480681 | 66482573 | 66480681 | ID=MS.gene23404 |
| chr8.1 | mRNA | 66480681 | 66482573 | 66480681 | ID=MS.gene23404.t1;Parent=MS.gene23404 |
| chr8.1 | exon | 66482138 | 66482573 | 66482138 | ID=MS.gene23404.t1.exon1;Parent=MS.gene23404.t1 |
| chr8.1 | CDS | 66482138 | 66482573 | 66482138 | ID=cds.MS.gene23404.t1;Parent=MS.gene23404.t1 |
| chr8.1 | exon | 66481483 | 66481857 | 66481483 | ID=MS.gene23404.t1.exon2;Parent=MS.gene23404.t1 |
| chr8.1 | CDS | 66481483 | 66481857 | 66481483 | ID=cds.MS.gene23404.t1;Parent=MS.gene23404.t1 |
| chr8.1 | exon | 66480681 | 66480977 | 66480681 | ID=MS.gene23404.t1.exon3;Parent=MS.gene23404.t1 |
| chr8.1 | CDS | 66480681 | 66480977 | 66480681 | ID=cds.MS.gene23404.t1;Parent=MS.gene23404.t1 |
| Gene Sequence |
| Protein sequence |
